Query 033318
Match_columns 122
No_of_seqs 106 out of 831
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:27:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033318.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033318hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3385 V-SNARE [Intracellular 100.0 6.3E-29 1.4E-33 170.9 10.0 115 8-122 1-118 (118)
2 KOG3202 SNARE protein TLG1/Syn 99.8 5E-19 1.1E-23 135.9 12.3 91 30-120 142-233 (235)
3 PF05739 SNARE: SNARE domain; 99.5 3.1E-13 6.7E-18 83.6 8.9 61 37-97 1-61 (63)
4 cd00193 t_SNARE Soluble NSF (N 99.2 3.5E-11 7.5E-16 72.8 6.9 58 36-93 2-59 (60)
5 smart00397 t_SNARE Helical reg 99.2 1.9E-10 4.1E-15 70.6 8.2 62 32-93 4-65 (66)
6 KOG3065 SNAP-25 (synaptosome-a 99.2 6.9E-11 1.5E-15 92.8 7.6 69 27-95 205-273 (273)
7 PF09753 Use1: Membrane fusion 99.1 1E-09 2.2E-14 84.9 11.8 89 34-122 161-249 (251)
8 KOG0809 SNARE protein TLG2/Syn 98.7 1E-07 2.2E-12 75.3 9.3 85 36-120 214-299 (305)
9 KOG0810 SNARE protein Syntaxin 98.6 3.3E-07 7.1E-12 73.0 9.6 78 40-117 206-286 (297)
10 KOG0812 SNARE protein SED5/Syn 98.6 1E-06 2.2E-11 69.6 11.5 82 40-121 227-309 (311)
11 COG5325 t-SNARE complex subuni 98.6 1.2E-06 2.5E-11 68.9 11.2 85 32-116 187-274 (283)
12 KOG0811 SNARE protein PEP12/VA 98.5 4E-06 8.8E-11 65.9 11.7 80 32-111 172-253 (269)
13 COG5074 t-SNARE complex subuni 98.2 1.5E-05 3.3E-10 61.6 9.7 80 39-118 184-267 (280)
14 KOG2678 Predicted membrane pro 98.0 6.3E-05 1.4E-09 57.7 9.8 84 38-121 153-237 (244)
15 PF03908 Sec20: Sec20; InterP 97.9 0.00054 1.2E-08 45.4 10.9 83 40-122 8-90 (92)
16 PF00957 Synaptobrevin: Synapt 97.5 0.0012 2.7E-08 43.2 8.7 57 39-96 2-62 (89)
17 KOG3208 SNARE protein GS28 [In 97.4 0.0023 4.9E-08 49.1 9.7 88 32-120 142-230 (231)
18 KOG3894 SNARE protein Syntaxin 96.7 0.033 7.2E-07 44.8 11.0 85 31-115 213-307 (316)
19 PF12352 V-SNARE_C: Snare regi 96.5 0.063 1.4E-06 33.0 8.8 59 39-97 7-65 (66)
20 KOG3251 Golgi SNAP receptor co 96.4 0.047 1E-06 41.8 9.7 86 9-97 100-186 (213)
21 KOG0860 Synaptobrevin/VAMP-lik 96.3 0.062 1.3E-06 37.5 9.1 37 58-95 48-87 (116)
22 KOG1666 V-SNARE [Intracellular 96.1 0.097 2.1E-06 40.1 9.7 67 54-120 149-218 (220)
23 PF10779 XhlA: Haemolysin XhlA 95.6 0.15 3.2E-06 32.2 7.8 61 59-122 11-71 (71)
24 KOG0860 Synaptobrevin/VAMP-lik 95.2 0.33 7.1E-06 33.9 9.0 56 32-88 32-87 (116)
25 PF05957 DUF883: Bacterial pro 94.5 0.83 1.8E-05 30.0 10.8 56 33-88 2-58 (94)
26 PRK00846 hypothetical protein; 91.7 2.1 4.6E-05 27.7 7.6 54 34-87 7-60 (77)
27 PRK10884 SH3 domain-containing 91.7 3.9 8.5E-05 31.0 10.3 60 36-95 96-159 (206)
28 KOG0862 Synaptobrevin/VAMP-lik 91.6 1.7 3.6E-05 33.5 8.1 79 41-120 135-214 (216)
29 PF09753 Use1: Membrane fusion 91.2 5.6 0.00012 30.6 12.2 87 32-121 155-245 (251)
30 PF15188 CCDC-167: Coiled-coil 90.9 3.3 7.1E-05 27.4 8.1 76 41-118 6-84 (85)
31 PF01519 DUF16: Protein of unk 90.6 2.3 4.9E-05 29.1 7.2 49 37-85 50-98 (102)
32 PF04102 SlyX: SlyX; InterPro 90.3 2.7 6E-05 26.3 7.0 51 38-88 2-52 (69)
33 COG4575 ElaB Uncharacterized c 90.3 4.3 9.4E-05 27.8 10.5 90 32-121 11-102 (104)
34 PF07889 DUF1664: Protein of u 90.2 3.6 7.9E-05 29.0 8.2 61 35-95 63-123 (126)
35 PF11166 DUF2951: Protein of u 90.0 4.3 9.4E-05 27.4 9.5 46 36-81 7-52 (98)
36 PF05531 NPV_P10: Nucleopolyhe 89.7 1.3 2.8E-05 28.6 5.2 50 36-85 14-66 (75)
37 KOG0811 SNARE protein PEP12/VA 89.4 9.1 0.0002 30.4 10.8 86 35-121 182-267 (269)
38 PRK00736 hypothetical protein; 88.9 3.8 8.2E-05 25.7 6.8 48 39-86 4-51 (68)
39 PF07798 DUF1640: Protein of u 88.7 7.6 0.00017 28.4 10.7 52 35-86 86-145 (177)
40 TIGR00383 corA magnesium Mg(2+ 88.6 8.6 0.00019 30.1 10.3 15 80-94 250-264 (318)
41 PRK04325 hypothetical protein; 88.3 4.8 0.0001 25.6 7.2 49 38-86 7-55 (74)
42 PRK00295 hypothetical protein; 87.1 5.5 0.00012 24.9 6.9 48 39-86 4-51 (68)
43 PRK02119 hypothetical protein; 86.9 6 0.00013 25.1 7.4 51 36-86 5-55 (73)
44 PRK04406 hypothetical protein; 86.1 6.9 0.00015 25.1 7.4 49 37-85 8-56 (75)
45 COG5074 t-SNARE complex subuni 85.8 14 0.0003 29.1 9.6 74 35-115 194-268 (280)
46 PRK02793 phi X174 lysis protei 85.7 6.9 0.00015 24.8 7.2 50 37-86 5-54 (72)
47 KOG1666 V-SNARE [Intracellular 81.4 8.2 0.00018 29.7 6.7 30 68-97 153-185 (220)
48 PRK10132 hypothetical protein; 80.8 15 0.00033 25.1 10.6 54 32-85 8-62 (108)
49 KOG0812 SNARE protein SED5/Syn 78.4 26 0.00056 28.3 8.9 43 41-90 242-284 (311)
50 PF15106 TMEM156: TMEM156 prot 78.2 1.9 4.1E-05 33.2 2.4 20 103-122 177-196 (226)
51 PF05568 ASFV_J13L: African sw 78.0 2.3 5E-05 31.1 2.7 19 102-120 30-48 (189)
52 PF00957 Synaptobrevin: Synapt 77.4 16 0.00035 23.4 8.7 56 33-89 7-62 (89)
53 PRK11637 AmiB activator; Provi 77.1 40 0.00087 27.8 10.3 55 42-96 77-131 (428)
54 cd00179 SynN Syntaxin N-termin 75.3 20 0.00043 24.8 6.9 61 36-96 9-69 (151)
55 PHA03386 P10 fibrous body prot 74.5 10 0.00022 25.4 4.9 46 36-85 15-60 (94)
56 PF08614 ATG16: Autophagy prot 73.8 33 0.00072 25.3 8.5 64 35-98 111-174 (194)
57 PF04210 MtrG: Tetrahydrometha 73.1 17 0.00037 23.1 5.4 46 67-119 18-65 (70)
58 COG2900 SlyX Uncharacterized p 72.3 23 0.00049 22.7 7.0 49 36-84 4-52 (72)
59 PF03904 DUF334: Domain of unk 72.2 44 0.00096 26.0 10.6 46 35-80 63-109 (230)
60 PF11190 DUF2976: Protein of u 71.4 8.4 0.00018 25.5 3.9 35 87-121 46-82 (87)
61 PF01544 CorA: CorA-like Mg2+ 71.4 41 0.0009 25.3 10.4 16 80-95 226-241 (292)
62 KOG1690 emp24/gp25L/p24 family 71.2 44 0.00096 25.6 8.2 37 30-66 129-165 (215)
63 PRK04654 sec-independent trans 71.1 38 0.00082 26.1 7.8 44 40-84 27-70 (214)
64 PF14523 Syntaxin_2: Syntaxin- 70.8 22 0.00048 23.0 5.9 57 40-97 3-59 (102)
65 PF12495 Vip3A_N: Vegetative i 70.7 15 0.00032 26.3 5.3 63 33-95 45-114 (177)
66 PHA03395 p10 fibrous body prot 70.1 16 0.00035 24.2 5.0 50 36-85 14-66 (87)
67 PF11902 DUF3422: Protein of u 70.0 66 0.0014 27.1 10.5 56 39-95 311-368 (420)
68 PHA03054 IMV membrane protein; 68.7 4.5 9.7E-05 25.9 2.0 12 74-85 17-28 (72)
69 PRK14472 F0F1 ATP synthase sub 68.7 4.7 0.0001 29.3 2.5 21 102-122 21-41 (175)
70 PF01102 Glycophorin_A: Glycop 68.2 4.7 0.0001 28.3 2.3 12 110-121 77-88 (122)
71 KOG3251 Golgi SNAP receptor co 67.6 54 0.0012 25.2 8.8 18 82-99 157-174 (213)
72 KOG0810 SNARE protein Syntaxin 67.5 64 0.0014 25.9 9.8 78 37-114 210-287 (297)
73 KOG3894 SNARE protein Syntaxin 67.2 28 0.00061 28.3 6.7 56 64-119 259-314 (316)
74 PHA02819 hypothetical protein; 66.8 6.7 0.00014 25.0 2.5 17 74-90 17-33 (71)
75 PF15183 MRAP: Melanocortin-2 65.7 8 0.00017 25.6 2.8 20 103-122 43-62 (90)
76 PF05478 Prominin: Prominin; 65.7 65 0.0014 29.1 9.5 16 51-66 361-376 (806)
77 PRK09973 putative outer membra 65.6 36 0.00079 22.4 6.3 32 41-72 39-70 (85)
78 PRK13453 F0F1 ATP synthase sub 65.4 6 0.00013 28.8 2.5 20 103-122 22-41 (173)
79 PRK13454 F0F1 ATP synthase sub 65.0 6.4 0.00014 29.0 2.6 18 104-121 36-53 (181)
80 PF03908 Sec20: Sec20; InterP 65.0 35 0.00077 22.1 8.8 17 102-118 73-89 (92)
81 PF04912 Dynamitin: Dynamitin 64.3 56 0.0012 26.8 8.2 50 44-93 333-382 (388)
82 PHA03240 envelope glycoprotein 63.9 7.2 0.00016 30.3 2.7 17 103-119 214-230 (258)
83 PF08650 DASH_Dad4: DASH compl 63.9 36 0.00077 21.8 5.6 37 31-67 2-38 (72)
84 PF02646 RmuC: RmuC family; I 63.8 71 0.0015 25.3 8.5 64 35-102 8-71 (304)
85 TIGR01149 mtrG N5-methyltetrah 62.7 37 0.00081 21.6 5.6 23 62-84 13-35 (70)
86 PF09451 ATG27: Autophagy-rela 62.4 7.7 0.00017 30.3 2.7 21 101-121 200-220 (268)
87 PF03904 DUF334: Domain of unk 62.1 73 0.0016 24.8 10.6 25 31-55 66-90 (230)
88 PF04639 Baculo_E56: Baculovir 61.6 5.1 0.00011 32.2 1.6 20 103-122 280-299 (305)
89 PF00523 Fusion_gly: Fusion gl 60.8 4.5 9.8E-05 34.7 1.2 26 70-95 440-465 (490)
90 PF13747 DUF4164: Domain of un 60.5 45 0.00098 21.9 7.6 51 45-95 37-87 (89)
91 smart00503 SynN Syntaxin N-ter 60.3 45 0.00098 21.8 6.9 60 36-95 11-70 (117)
92 PF07195 FliD_C: Flagellar hoo 60.3 54 0.0012 24.9 7.1 66 32-97 170-236 (239)
93 PHA02967 hypothetical protein; 60.2 9.5 0.00021 27.0 2.6 23 100-122 25-47 (128)
94 PF14715 FixP_N: N-terminal do 59.8 15 0.00033 21.8 3.1 20 101-120 21-40 (51)
95 PRK11637 AmiB activator; Provi 59.6 94 0.002 25.7 8.8 35 61-95 89-123 (428)
96 PRK10884 SH3 domain-containing 59.4 75 0.0016 24.1 10.5 50 37-93 115-164 (206)
97 PF06143 Baculo_11_kDa: Baculo 59.0 27 0.00059 23.0 4.4 7 90-96 21-27 (84)
98 PHA02689 ORF051 putative membr 59.0 10 0.00022 26.9 2.5 23 100-122 28-50 (128)
99 PF11688 DUF3285: Protein of u 58.1 30 0.00065 20.1 4.0 32 90-121 11-44 (45)
100 PF06024 DUF912: Nucleopolyhed 57.8 10 0.00022 25.4 2.4 9 111-119 76-84 (101)
101 PF05545 FixQ: Cbb3-type cytoc 57.7 15 0.00032 21.2 2.8 16 106-121 15-30 (49)
102 PF10805 DUF2730: Protein of u 57.0 57 0.0012 21.9 6.7 46 35-80 44-91 (106)
103 PF07889 DUF1664: Protein of u 57.0 66 0.0014 22.6 6.8 60 36-95 46-109 (126)
104 PRK13454 F0F1 ATP synthase sub 56.7 9.2 0.0002 28.1 2.2 16 106-121 33-48 (181)
105 PRK01026 tetrahydromethanopter 56.6 52 0.0011 21.3 5.6 21 64-84 18-38 (77)
106 TIGR01478 STEVOR variant surfa 56.3 10 0.00022 30.4 2.5 15 108-122 270-284 (295)
107 PRK13455 F0F1 ATP synthase sub 56.2 12 0.00026 27.4 2.7 18 103-120 30-47 (184)
108 PF07798 DUF1640: Protein of u 55.7 77 0.0017 23.0 10.0 30 69-98 121-150 (177)
109 PF08135 EPV_E5: Major transfo 55.7 15 0.00033 21.1 2.5 9 111-119 24-32 (44)
110 PTZ00370 STEVOR; Provisional 55.6 11 0.00023 30.4 2.5 15 108-122 266-280 (296)
111 smart00502 BBC B-Box C-termina 55.4 55 0.0012 21.3 7.7 41 57-97 49-90 (127)
112 COG4736 CcoQ Cbb3-type cytochr 55.4 17 0.00036 22.5 2.8 18 105-122 14-31 (60)
113 PF13800 Sigma_reg_N: Sigma fa 54.7 9 0.00019 25.1 1.7 7 93-99 3-9 (96)
114 PF06738 DUF1212: Protein of u 54.3 72 0.0016 23.0 6.6 33 69-101 69-101 (193)
115 COG4942 Membrane-bound metallo 54.3 1.4E+02 0.0029 25.4 9.0 61 35-95 40-100 (420)
116 PF02970 TBCA: Tubulin binding 54.2 60 0.0013 21.3 6.1 53 45-98 26-78 (90)
117 PF06692 MNSV_P7B: Melon necro 53.7 15 0.00033 22.5 2.4 18 103-120 15-32 (61)
118 PF05791 Bacillus_HBL: Bacillu 53.5 88 0.0019 23.0 8.5 62 38-99 101-162 (184)
119 PF05366 Sarcolipin: Sarcolipi 53.2 30 0.00066 18.2 3.2 21 102-122 7-27 (31)
120 PF00015 MCPsignal: Methyl-acc 52.0 85 0.0018 22.4 8.0 29 49-77 144-172 (213)
121 PF02009 Rifin_STEVOR: Rifin/s 52.0 12 0.00026 30.1 2.2 15 108-122 266-280 (299)
122 PRK09546 zntB zinc transporter 51.9 1.2E+02 0.0026 24.0 11.1 13 82-94 258-270 (324)
123 COG0598 CorA Mg2+ and Co2+ tra 51.7 1.2E+02 0.0026 24.1 10.2 12 82-93 256-267 (322)
124 PF03302 VSP: Giardia variant- 51.7 9.3 0.0002 31.6 1.7 15 108-122 380-394 (397)
125 PF11395 DUF2873: Protein of u 51.4 24 0.00052 19.9 2.8 18 103-120 11-30 (43)
126 PF09577 Spore_YpjB: Sporulati 51.4 73 0.0016 24.7 6.4 19 103-121 200-219 (232)
127 PF08372 PRT_C: Plant phosphor 51.4 93 0.002 22.7 7.0 30 32-61 39-73 (156)
128 PTZ00382 Variant-specific surf 51.3 7.3 0.00016 26.0 0.8 7 114-120 85-91 (96)
129 TIGR00782 ccoP cytochrome c ox 51.1 18 0.00038 28.4 3.1 21 101-121 27-47 (285)
130 PF04728 LPP: Lipoprotein leuc 50.7 56 0.0012 19.9 7.4 22 41-62 4-25 (56)
131 PF03670 UPF0184: Uncharacteri 50.6 52 0.0011 21.6 4.7 20 36-55 29-48 (83)
132 KOG4331 Polytopic membrane pro 50.3 62 0.0013 29.7 6.6 94 4-97 315-417 (865)
133 PF05393 Hum_adeno_E3A: Human 49.5 21 0.00045 23.9 2.7 17 103-119 36-52 (94)
134 PRK07352 F0F1 ATP synthase sub 49.4 16 0.00035 26.4 2.5 19 104-122 24-42 (174)
135 PF01034 Syndecan: Syndecan do 49.0 5.7 0.00012 24.9 0.0 13 109-121 22-34 (64)
136 KOG0859 Synaptobrevin/VAMP-lik 48.6 1.2E+02 0.0027 23.3 7.2 10 45-54 130-139 (217)
137 PRK05585 yajC preprotein trans 48.4 20 0.00044 24.3 2.7 13 108-120 22-34 (106)
138 PRK15396 murein lipoprotein; P 48.4 73 0.0016 20.6 6.3 20 41-60 33-52 (78)
139 PRK01770 sec-independent trans 48.2 1.1E+02 0.0024 22.7 7.6 39 40-79 27-65 (171)
140 PF10831 DUF2556: Protein of u 47.9 17 0.00037 21.5 1.9 15 102-116 4-18 (53)
141 PRK09174 F0F1 ATP synthase sub 47.9 15 0.00033 27.6 2.2 12 105-116 59-70 (204)
142 PRK06664 fliD flagellar hook-a 47.3 86 0.0019 28.0 7.0 64 34-97 580-643 (661)
143 PF10183 ESSS: ESSS subunit of 47.3 23 0.0005 23.9 2.8 20 103-122 62-81 (105)
144 PRK08475 F0F1 ATP synthase sub 47.2 17 0.00038 26.3 2.3 19 103-121 26-44 (167)
145 PF08172 CASP_C: CASP C termin 47.1 18 0.00039 28.3 2.5 18 103-120 223-240 (248)
146 PF09548 Spore_III_AB: Stage I 46.3 66 0.0014 23.2 5.3 27 49-75 107-134 (170)
147 PRK04098 sec-independent trans 46.0 1.2E+02 0.0025 22.3 7.2 52 40-92 27-78 (158)
148 PF07097 DUF1359: Protein of u 46.0 75 0.0016 21.3 4.9 39 39-77 8-46 (102)
149 COG4064 MtrG Tetrahydromethano 45.8 79 0.0017 20.2 5.6 24 61-84 15-38 (75)
150 TIGR01010 BexC_CtrB_KpsE polys 45.7 1.6E+02 0.0034 23.6 9.4 32 64-95 274-305 (362)
151 PF10498 IFT57: Intra-flagella 45.3 1.1E+02 0.0024 25.2 6.9 52 44-95 291-344 (359)
152 PF05335 DUF745: Protein of un 44.8 1.3E+02 0.0029 22.5 7.8 59 37-95 113-171 (188)
153 PF06103 DUF948: Bacterial pro 44.8 81 0.0018 20.1 7.6 26 57-82 47-72 (90)
154 CHL00019 atpF ATP synthase CF0 44.0 20 0.00044 26.2 2.3 17 106-122 31-47 (184)
155 PF10661 EssA: WXG100 protein 43.9 22 0.00047 25.6 2.4 13 110-122 129-141 (145)
156 PF05791 Bacillus_HBL: Bacillu 43.9 1.3E+02 0.0028 22.1 7.0 52 35-86 130-181 (184)
157 PF14257 DUF4349: Domain of un 43.9 1.4E+02 0.0029 22.9 7.0 18 37-54 136-153 (262)
158 PF10198 Ada3: Histone acetylt 43.8 1.1E+02 0.0024 21.5 9.2 59 35-93 43-103 (131)
159 PHA02955 hypothetical protein; 43.6 26 0.00057 26.9 2.9 12 111-122 190-201 (213)
160 PHA03164 hypothetical protein; 43.5 24 0.00053 23.0 2.3 13 107-119 68-80 (88)
161 PF05103 DivIVA: DivIVA protei 43.5 25 0.00054 23.8 2.6 52 36-87 21-72 (131)
162 PF04420 CHD5: CHD5-like prote 43.4 24 0.00052 25.5 2.6 30 67-96 72-101 (161)
163 PRK13729 conjugal transfer pil 43.4 1.3E+02 0.0029 25.9 7.3 54 31-84 67-120 (475)
164 PRK06231 F0F1 ATP synthase sub 43.0 23 0.0005 26.6 2.5 18 105-122 54-71 (205)
165 PF11932 DUF3450: Protein of u 43.0 1.5E+02 0.0032 22.6 9.0 41 42-82 58-98 (251)
166 PRK09174 F0F1 ATP synthase sub 42.7 23 0.00051 26.7 2.5 18 104-121 53-70 (204)
167 PF00261 Tropomyosin: Tropomyo 42.5 1.5E+02 0.0033 22.5 7.5 60 39-98 14-73 (237)
168 COG2900 SlyX Uncharacterized p 42.5 90 0.002 20.0 5.6 37 60-96 14-50 (72)
169 PRK01919 tatB sec-independent 42.4 1.4E+02 0.003 22.2 8.0 29 40-68 27-55 (169)
170 PF09125 COX2-transmemb: Cytoc 42.2 39 0.00084 18.9 2.7 13 108-120 23-35 (38)
171 CHL00118 atpG ATP synthase CF0 42.0 25 0.00055 25.0 2.5 19 103-121 26-44 (156)
172 PF04568 IATP: Mitochondrial A 41.8 68 0.0015 21.7 4.4 28 51-78 73-100 (100)
173 PF01105 EMP24_GP25L: emp24/gp 41.8 8.6 0.00019 26.9 0.0 16 70-85 114-129 (183)
174 PF11945 WASH_WAHD: WAHD domai 41.5 1.9E+02 0.004 23.3 7.7 56 38-96 16-71 (297)
175 PRK00708 sec-independent trans 41.4 1.6E+02 0.0035 22.5 8.0 40 40-79 27-68 (209)
176 PF05568 ASFV_J13L: African sw 41.2 31 0.00066 25.4 2.8 19 103-121 35-53 (189)
177 PRK09039 hypothetical protein; 41.2 1.9E+02 0.0042 23.4 9.0 60 31-90 128-187 (343)
178 PF04740 LXG: LXG domain of WX 41.1 1.4E+02 0.003 21.7 6.7 67 30-96 96-166 (204)
179 PF05546 She9_MDM33: She9 / Md 41.0 1.6E+02 0.0035 22.5 10.6 23 98-120 150-172 (207)
180 PRK15048 methyl-accepting chem 40.9 2.2E+02 0.0048 24.0 9.4 54 41-94 271-324 (553)
181 KOG2825 Putative arsenite-tran 40.5 59 0.0013 26.2 4.5 73 46-118 167-239 (323)
182 COG3905 Predicted transcriptio 40.2 1.1E+02 0.0023 20.2 5.8 61 35-95 10-73 (83)
183 PF06682 DUF1183: Protein of u 40.0 27 0.00058 28.4 2.6 18 103-120 158-175 (318)
184 PF05266 DUF724: Protein of un 39.6 1.6E+02 0.0035 22.0 8.7 60 36-95 127-186 (190)
185 PRK02793 phi X174 lysis protei 39.2 98 0.0021 19.4 5.6 36 59-94 13-48 (72)
186 PF11027 DUF2615: Protein of u 39.2 92 0.002 21.2 4.7 11 86-96 16-26 (103)
187 PF11239 DUF3040: Protein of u 39.1 1E+02 0.0022 19.6 5.0 24 67-90 8-31 (82)
188 PF14316 DUF4381: Domain of un 39.1 27 0.00059 24.6 2.3 18 103-120 23-41 (146)
189 KOG0946 ER-Golgi vesicle-tethe 39.0 1.5E+02 0.0033 27.5 7.2 63 34-96 665-727 (970)
190 PF05377 FlaC_arch: Flagella a 38.9 90 0.0019 18.9 6.8 29 37-65 4-32 (55)
191 PF05440 MtrB: Tetrahydrometha 38.3 25 0.00054 23.8 1.8 28 59-86 35-62 (97)
192 PF08651 DASH_Duo1: DASH compl 38.2 1E+02 0.0022 19.8 4.6 30 68-97 8-37 (78)
193 PHA03072 putative viral membra 38.2 55 0.0012 24.6 3.8 36 84-119 13-48 (190)
194 PF15030 DUF4527: Protein of u 37.9 2.1E+02 0.0045 22.8 7.6 55 44-98 13-67 (277)
195 PF00429 TLV_coat: ENV polypro 37.6 2.1E+02 0.0045 25.0 7.7 46 50-95 424-469 (561)
196 smart00283 MA Methyl-accepting 37.5 1.6E+02 0.0035 21.4 8.2 57 37-93 29-85 (262)
197 PRK10600 nitrate/nitrite senso 37.4 1.1E+02 0.0024 25.8 6.0 8 113-120 138-145 (569)
198 PF02346 Vac_Fusion: Chordopox 37.2 62 0.0013 19.7 3.3 30 37-66 26-55 (57)
199 TIGR03745 conj_TIGR03745 integ 36.7 50 0.0011 22.6 3.1 36 87-122 62-99 (104)
200 TIGR01477 RIFIN variant surfac 36.7 32 0.00069 28.4 2.5 15 108-122 320-334 (353)
201 PF08650 DASH_Dad4: DASH compl 36.6 1.1E+02 0.0023 19.6 4.4 37 64-100 7-43 (72)
202 COG2857 CYT1 Cytochrome c1 [En 36.4 51 0.0011 25.6 3.6 44 72-115 186-237 (250)
203 KOG4603 TBP-1 interacting prot 36.3 1.9E+02 0.0041 21.8 8.2 62 35-96 81-144 (201)
204 PRK01371 sec-independent trans 36.0 1.3E+02 0.0029 21.5 5.4 27 40-66 27-53 (137)
205 PF01601 Corona_S2: Coronaviru 35.8 17 0.00038 32.0 0.9 76 34-120 482-568 (610)
206 PF11119 DUF2633: Protein of u 35.6 51 0.0011 20.3 2.7 15 102-116 8-22 (59)
207 PF00015 MCPsignal: Methyl-acc 35.5 1.6E+02 0.0035 20.9 9.2 57 37-93 97-153 (213)
208 PF14712 Snapin_Pallidin: Snap 35.4 1.2E+02 0.0026 19.3 8.2 59 35-94 27-90 (92)
209 PRK08032 fliD flagellar cappin 35.3 1.6E+02 0.0034 24.8 6.6 48 50-97 402-449 (462)
210 PF14018 DUF4234: Domain of un 35.2 99 0.0021 19.0 4.2 11 88-98 26-36 (75)
211 PTZ00046 rifin; Provisional 35.2 35 0.00076 28.2 2.5 15 108-122 325-339 (358)
212 COG3883 Uncharacterized protei 35.0 2.3E+02 0.005 22.5 8.7 27 60-86 72-98 (265)
213 TIGR02848 spore_III_AC stage I 34.8 89 0.0019 19.5 3.8 31 89-119 17-50 (64)
214 PF06679 DUF1180: Protein of u 34.6 34 0.00073 25.2 2.2 9 113-121 106-114 (163)
215 PRK14750 kdpF potassium-transp 34.5 66 0.0014 17.0 2.7 6 114-119 14-19 (29)
216 PF05082 Rop-like: Rop-like; 34.3 1.2E+02 0.0026 19.0 4.4 26 40-65 2-27 (66)
217 PF04111 APG6: Autophagy prote 34.1 2.5E+02 0.0053 22.5 8.4 58 41-98 79-136 (314)
218 PF06916 DUF1279: Protein of u 34.1 49 0.0011 21.5 2.7 33 89-121 1-33 (91)
219 PRK07737 fliD flagellar cappin 34.0 3E+02 0.0065 23.5 8.1 64 34-97 415-484 (501)
220 PRK00295 hypothetical protein; 34.0 1.2E+02 0.0025 18.8 5.6 24 61-84 12-35 (68)
221 PRK00846 hypothetical protein; 34.0 1.3E+02 0.0028 19.3 5.6 36 60-95 19-54 (77)
222 PF00261 Tropomyosin: Tropomyo 33.9 2.1E+02 0.0046 21.7 7.8 61 35-95 87-147 (237)
223 PF03356 Pox_LP_H2: Viral late 33.2 77 0.0017 23.8 3.8 36 84-119 13-48 (189)
224 PF06013 WXG100: Proteins of 1 33.1 1.1E+02 0.0024 18.2 7.9 32 43-74 7-38 (86)
225 PF00804 Syntaxin: Syntaxin; 32.8 1.3E+02 0.0027 18.8 6.3 59 36-94 10-71 (103)
226 PF11044 TMEMspv1-c74-12: Plec 32.3 68 0.0015 18.7 2.7 9 103-111 4-12 (49)
227 COG4640 Predicted membrane pro 32.1 65 0.0014 27.3 3.6 19 103-121 54-72 (465)
228 PRK00736 hypothetical protein; 32.0 1.3E+02 0.0028 18.6 5.6 29 62-90 13-41 (68)
229 PRK09731 putative general secr 31.9 73 0.0016 23.7 3.6 20 102-121 37-56 (178)
230 PF09527 ATPase_gene1: Putativ 31.8 70 0.0015 18.6 2.9 23 99-121 29-51 (55)
231 PF04880 NUDE_C: NUDE protein, 31.7 34 0.00075 25.2 1.8 39 32-71 17-55 (166)
232 PF06084 Cytomega_TRL10: Cytom 31.7 23 0.0005 24.9 0.8 12 107-118 69-80 (150)
233 PRK02119 hypothetical protein; 31.6 1.4E+02 0.0029 18.8 5.6 35 59-93 14-48 (73)
234 PF07240 Turandot: Stress-indu 31.6 16 0.00035 24.1 0.1 19 5-24 41-60 (85)
235 PF05565 Sipho_Gp157: Siphovir 30.7 2E+02 0.0044 20.6 8.1 60 32-91 32-91 (162)
236 TIGR01410 tatB twin arginine-t 30.6 1.5E+02 0.0032 19.0 5.2 38 40-78 26-63 (80)
237 PF01519 DUF16: Protein of unk 30.6 1.8E+02 0.0039 19.8 7.9 60 26-86 20-85 (102)
238 PF13807 GNVR: G-rich domain o 30.5 84 0.0018 19.7 3.3 18 59-76 9-26 (82)
239 PRK10697 DNA-binding transcrip 29.8 1.5E+02 0.0032 20.6 4.7 17 1-17 4-20 (118)
240 KOG3202 SNARE protein TLG1/Syn 29.8 2.7E+02 0.0058 21.7 10.1 39 80-118 185-227 (235)
241 PF06387 Calcyon: D1 dopamine 29.8 46 0.00099 25.0 2.2 17 103-119 89-105 (186)
242 PRK08147 flgK flagellar hook-a 29.7 3.6E+02 0.0078 23.1 8.0 56 31-86 130-185 (547)
243 COG2976 Uncharacterized protei 29.6 1.1E+02 0.0023 23.5 4.2 32 88-119 11-42 (207)
244 PF06120 Phage_HK97_TLTM: Tail 29.4 1.7E+02 0.0036 23.6 5.5 47 40-86 55-106 (301)
245 PF05283 MGC-24: Multi-glycosy 29.1 53 0.0011 24.7 2.4 16 107-122 170-185 (186)
246 PF05781 MRVI1: MRVI1 protein; 29.1 1.1E+02 0.0023 26.8 4.6 9 83-91 468-476 (538)
247 PRK10404 hypothetical protein; 29.0 1.8E+02 0.0039 19.5 10.8 16 71-86 41-56 (101)
248 COG0690 SecE Preprotein transl 29.0 65 0.0014 20.3 2.5 14 83-96 23-36 (73)
249 KOG0809 SNARE protein TLG2/Syn 28.9 3.2E+02 0.0069 22.2 7.2 75 41-118 226-300 (305)
250 PHA03231 glycoprotein BALF4; P 28.9 2.9E+02 0.0063 25.6 7.4 10 32-41 633-642 (829)
251 PF12718 Tropomyosin_1: Tropom 28.8 2.1E+02 0.0046 20.2 7.6 63 37-99 46-111 (143)
252 PRK10299 PhoPQ regulatory prot 28.8 75 0.0016 18.6 2.5 17 103-120 6-22 (47)
253 PF13314 DUF4083: Domain of un 28.6 62 0.0013 19.9 2.3 7 109-115 14-20 (58)
254 COG4420 Predicted membrane pro 28.6 2.4E+02 0.0053 21.3 5.9 23 53-75 27-49 (191)
255 PF04102 SlyX: SlyX; InterPro 28.6 1.5E+02 0.0032 18.3 5.6 30 63-92 13-42 (69)
256 PF05957 DUF883: Bacterial pro 28.5 1.7E+02 0.0036 18.8 11.0 20 69-88 32-51 (94)
257 PRK04598 tatA twin arginine tr 28.4 47 0.001 21.7 1.8 7 105-111 10-16 (81)
258 PRK15041 methyl-accepting chem 28.3 3.7E+02 0.0081 22.8 9.2 53 36-88 436-488 (554)
259 PRK07521 flgK flagellar hook-a 28.3 3.7E+02 0.008 22.7 7.8 56 31-86 124-179 (483)
260 PRK10803 tol-pal system protei 28.2 2.9E+02 0.0062 21.5 8.5 43 52-94 59-101 (263)
261 PRK10715 flk flagella biosynth 27.9 66 0.0014 26.3 3.0 31 50-80 228-260 (335)
262 PRK05683 flgK flagellar hook-a 27.9 3.7E+02 0.0081 24.1 7.9 57 30-86 128-184 (676)
263 PF13179 DUF4006: Family of un 27.9 72 0.0016 20.1 2.5 19 103-121 17-35 (66)
264 PTZ00234 variable surface prot 27.9 36 0.00079 28.8 1.5 20 100-119 364-383 (433)
265 KOG2196 Nuclear porin [Nuclear 27.8 3.1E+02 0.0067 21.7 6.5 42 37-78 110-151 (254)
266 PF10392 COG5: Golgi transport 27.7 2.1E+02 0.0045 19.7 7.0 47 45-95 60-106 (132)
267 PRK07739 flgK flagellar hook-a 27.7 3.9E+02 0.0084 22.8 7.9 56 31-86 141-196 (507)
268 PF10256 Erf4: Golgin subfamil 27.6 1.9E+02 0.004 19.3 4.8 19 82-100 33-51 (118)
269 PF06936 Selenoprotein_S: Sele 27.5 20 0.00044 26.9 0.0 13 104-116 38-50 (190)
270 PRK10856 cytoskeletal protein 27.5 59 0.0013 26.3 2.7 17 104-120 117-133 (331)
271 PF12718 Tropomyosin_1: Tropom 27.4 2.3E+02 0.0049 20.1 8.4 53 42-94 16-68 (143)
272 PRK15048 methyl-accepting chem 27.2 3.8E+02 0.0082 22.6 9.2 58 36-93 434-491 (553)
273 PF07432 Hc1: Histone H1-like 27.0 2.3E+02 0.0049 19.9 5.6 45 45-96 2-46 (123)
274 PF06363 Picorna_P3A: Picornav 26.8 2.1E+02 0.0044 19.3 5.0 43 78-122 48-93 (100)
275 PF12420 DUF3671: Protein of u 26.7 73 0.0016 21.5 2.6 19 77-95 23-41 (104)
276 PF10854 DUF2649: Protein of u 26.6 90 0.0019 19.4 2.7 16 104-119 39-54 (67)
277 PF15361 RIC3: Resistance to i 26.5 56 0.0012 23.6 2.1 14 109-122 90-103 (152)
278 PF02096 60KD_IMP: 60Kd inner 26.4 2.5E+02 0.0055 20.3 7.1 36 86-121 52-89 (198)
279 TIGR02132 phaR_Bmeg polyhydrox 26.3 2.9E+02 0.0062 20.9 7.3 60 37-96 76-135 (189)
280 PRK06665 flgK flagellar hook-a 26.0 4.5E+02 0.0097 23.2 8.0 56 31-86 141-196 (627)
281 TIGR02492 flgK_ends flagellar 25.8 3.4E+02 0.0074 21.5 7.8 56 31-86 129-184 (322)
282 PRK15041 methyl-accepting chem 25.8 4.2E+02 0.0091 22.6 9.2 53 42-94 274-326 (554)
283 PF11466 Doppel: Prion-like pr 25.7 67 0.0014 17.1 1.8 12 103-114 7-18 (30)
284 PRK06945 flgK flagellar hook-a 25.6 4.5E+02 0.0097 23.4 7.9 58 30-87 129-186 (651)
285 PRK04325 hypothetical protein; 25.4 1.8E+02 0.0039 18.3 6.1 33 59-91 14-46 (74)
286 PF04740 LXG: LXG domain of WX 25.4 2.7E+02 0.0058 20.1 6.9 15 47-61 106-120 (204)
287 TIGR00964 secE_bact preprotein 25.1 73 0.0016 18.7 2.1 13 84-96 5-17 (55)
288 KOG4025 Putative apoptosis rel 25.0 2.4E+02 0.0052 21.2 5.2 47 32-78 85-131 (207)
289 TIGR00847 ccoS cytochrome oxid 25.0 84 0.0018 18.7 2.4 9 114-122 19-27 (51)
290 PF10168 Nup88: Nuclear pore c 24.9 5.2E+02 0.011 23.4 9.6 62 35-96 553-621 (717)
291 PLN00174 predicted protein; Pr 24.9 91 0.002 22.9 3.0 20 102-121 117-137 (160)
292 PF03408 Foamy_virus_ENV: Foam 24.8 1.1E+02 0.0023 28.4 3.9 27 90-116 46-75 (981)
293 PRK09793 methyl-accepting prot 24.7 4.3E+02 0.0093 22.3 9.2 47 46-92 274-320 (533)
294 PF13967 RSN1_TM: Late exocyto 24.7 76 0.0016 22.4 2.6 24 99-122 133-156 (157)
295 PHA02902 putative IMV membrane 24.5 91 0.002 19.6 2.5 10 113-122 16-25 (70)
296 PF11189 DUF2973: Protein of u 24.5 94 0.002 19.3 2.6 18 103-120 4-21 (65)
297 smart00283 MA Methyl-accepting 24.4 2.8E+02 0.0061 20.1 9.0 38 40-77 39-76 (262)
298 PF10267 Tmemb_cc2: Predicted 24.4 4.3E+02 0.0093 22.2 11.6 54 34-87 263-317 (395)
299 PHA02855 anti-apoptotic membra 24.2 2E+02 0.0043 21.5 4.7 15 108-122 159-173 (180)
300 PRK08471 flgK flagellar hook-a 24.2 4.9E+02 0.011 22.9 7.8 56 31-86 134-189 (613)
301 PF11346 DUF3149: Protein of u 24.1 94 0.002 17.7 2.4 7 114-120 28-34 (42)
302 PF06422 PDR_CDR: CDR ABC tran 23.7 98 0.0021 20.6 2.8 9 103-111 52-60 (103)
303 PRK06798 fliD flagellar cappin 23.7 2.2E+02 0.0048 23.9 5.5 46 52-97 377-422 (440)
304 PF07225 NDUF_B4: NADH-ubiquin 23.6 89 0.0019 22.0 2.6 20 103-122 83-102 (125)
305 PF11853 DUF3373: Protein of u 23.5 1.1E+02 0.0023 26.5 3.5 14 41-54 32-45 (489)
306 PF06009 Laminin_II: Laminin D 23.4 27 0.00058 24.5 0.0 44 41-84 25-68 (138)
307 TIGR00540 hemY_coli hemY prote 23.3 69 0.0015 26.0 2.4 19 103-121 41-59 (409)
308 PRK07191 flgK flagellar hook-a 23.2 4.5E+02 0.0098 22.0 7.8 56 31-86 129-184 (456)
309 KOG2861 Uncharacterized conser 23.1 1.8E+02 0.004 24.4 4.8 16 103-118 373-388 (399)
310 PF03597 CcoS: Cytochrome oxid 23.1 99 0.0021 17.8 2.4 6 116-121 20-25 (45)
311 PRK10803 tol-pal system protei 23.0 3.6E+02 0.0079 20.9 7.8 27 37-63 58-84 (263)
312 cd01324 cbb3_Oxidase_CcoQ Cyto 22.9 1.2E+02 0.0026 17.5 2.8 11 108-118 19-29 (48)
313 PF13150 DUF3989: Protein of u 22.9 1.3E+02 0.0028 19.7 3.1 33 89-121 13-47 (85)
314 TIGR00513 accA acetyl-CoA carb 22.8 3.2E+02 0.0068 22.2 6.0 61 37-100 7-67 (316)
315 PRK04406 hypothetical protein; 22.8 2.1E+02 0.0046 18.1 7.1 37 58-94 15-51 (75)
316 KOG2546 Abl interactor ABI-1, 22.6 4.6E+02 0.01 22.6 7.0 60 31-90 46-105 (483)
317 PF00509 Hemagglutinin: Haemag 22.4 4.2E+02 0.0092 23.3 6.9 41 57-97 414-456 (550)
318 PRK08871 flgK flagellar hook-a 22.4 5.1E+02 0.011 23.0 7.6 57 30-86 131-187 (626)
319 PF11057 Cortexin: Cortexin of 22.3 90 0.002 20.3 2.2 15 103-117 31-45 (81)
320 COG3898 Uncharacterized membra 22.1 68 0.0015 27.5 2.1 16 107-122 48-63 (531)
321 TIGR02120 GspF general secreti 22.0 2E+02 0.0043 23.3 4.8 17 80-96 137-153 (399)
322 PF13874 Nup54: Nucleoporin co 22.0 2.5E+02 0.0053 19.6 4.7 16 37-52 48-63 (141)
323 PF14942 Muted: Organelle biog 21.9 3.1E+02 0.0067 19.6 6.6 31 67-97 58-88 (145)
324 PF11031 Phage_holin_T: Bacter 21.8 1.7E+02 0.0036 22.5 4.0 23 84-106 9-31 (216)
325 KOG1092 Ypt/Rab-specific GTPas 21.8 1E+02 0.0022 26.4 3.1 31 67-97 337-367 (484)
326 KOG2991 Splicing regulator [RN 21.8 4.3E+02 0.0093 21.3 7.9 65 32-96 220-299 (330)
327 TIGR02878 spore_ypjB sporulati 21.7 3.8E+02 0.0083 20.9 6.0 61 62-122 152-221 (233)
328 PRK10573 type IV pilin biogene 21.6 3.3E+02 0.007 22.1 6.0 15 52-66 94-108 (399)
329 COG1422 Predicted membrane pro 21.6 3.7E+02 0.0081 20.5 9.2 22 100-121 122-143 (201)
330 PF07835 COX4_pro_2: Bacterial 21.5 62 0.0013 18.5 1.3 12 104-115 28-39 (44)
331 PF04156 IncA: IncA protein; 21.4 3.2E+02 0.0069 19.6 9.0 60 36-95 91-150 (191)
332 PF09548 Spore_III_AB: Stage I 21.3 3.2E+02 0.0069 19.6 6.0 17 102-118 152-168 (170)
333 KOG3065 SNAP-25 (synaptosome-a 21.2 2.7E+02 0.0057 22.2 5.2 52 45-96 78-135 (273)
334 COG1256 FlgK Flagellar hook-as 21.2 5.6E+02 0.012 22.4 7.7 56 32-87 134-189 (552)
335 PF00584 SecE: SecE/Sec61-gamm 21.2 1.7E+02 0.0038 16.9 3.3 13 84-96 6-18 (57)
336 PF10046 BLOC1_2: Biogenesis o 21.2 2.5E+02 0.0055 18.4 8.3 44 37-84 39-82 (99)
337 PRK13895 conjugal transfer pro 21.1 3.3E+02 0.0072 19.7 10.3 10 55-64 58-67 (144)
338 PF01213 CAP_N: Adenylate cycl 21.0 4.5E+02 0.0097 21.2 7.1 36 35-73 46-81 (312)
339 PRK06799 flgK flagellar hook-a 21.0 5E+02 0.011 21.7 7.8 55 32-86 135-189 (431)
340 PF00429 TLV_coat: ENV polypro 20.9 5.7E+02 0.012 22.3 8.1 37 32-69 427-463 (561)
341 COG1766 fliF Flagellar basal b 20.8 73 0.0016 27.8 2.1 19 103-121 444-462 (545)
342 PRK09793 methyl-accepting prot 20.8 5.2E+02 0.011 21.8 9.4 58 37-94 433-490 (533)
343 COG5522 Predicted integral mem 20.8 1.1E+02 0.0024 23.7 2.9 16 107-122 208-223 (236)
344 PRK10617 cytochrome c-type pro 20.7 1.3E+02 0.0029 22.7 3.3 12 88-99 11-22 (200)
345 PRK10747 putative protoheme IX 20.6 84 0.0018 25.5 2.4 19 103-121 41-59 (398)
346 PRK08724 fliD flagellar cappin 20.6 4.3E+02 0.0093 23.9 6.8 48 50-97 613-660 (673)
347 PRK09973 putative outer membra 20.5 2.6E+02 0.0057 18.3 6.0 45 41-85 25-69 (85)
348 PF06638 Strabismus: Strabismu 20.5 93 0.002 27.0 2.6 10 111-120 174-183 (505)
349 PHA02414 hypothetical protein 20.4 2.9E+02 0.0064 18.8 6.8 23 45-67 34-56 (111)
350 PF08372 PRT_C: Plant phosphor 20.3 3.5E+02 0.0076 19.7 5.5 16 31-46 34-49 (156)
351 PF15222 KAR: Kidney androgen- 20.2 1.3E+02 0.0028 20.1 2.7 21 58-80 8-28 (103)
352 PRK06007 fliF flagellar MS-rin 20.2 2.2E+02 0.0047 24.7 4.9 18 83-100 4-21 (542)
353 PRK02251 putative septation in 20.1 1.5E+02 0.0031 19.7 3.0 7 114-120 48-54 (87)
354 PF04100 Vps53_N: Vps53-like, 20.1 4.1E+02 0.0088 21.9 6.3 28 37-67 22-49 (383)
355 COG5325 t-SNARE complex subuni 20.0 4.7E+02 0.01 21.0 9.9 76 45-120 193-275 (283)
No 1
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.3e-29 Score=170.94 Aligned_cols=115 Identities=38% Similarity=0.536 Sum_probs=106.1
Q ss_pred ccccccccCCcc---CCCccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 8 RNSKVALFDGIE---EGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 8 ~~~r~~l~~g~~---~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
+++|.++|+|-| ++.|+++++..++.+|.|||+.++.|.++|..||.++.+|++||+.||++||+|+++||+|...|
T Consensus 1 r~~R~g~~dg~~~l~~~~~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L 80 (118)
T KOG3385|consen 1 RGSRFGLFDGSNGLEDGVSRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFL 80 (118)
T ss_pred CCcccCcccCCCcccccccccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHH
Confidence 578999999943 68888888888999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhC
Q 033318 85 SGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 85 ~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~l~k 122 (122)
.+++.|++.+.++++.+.+||++++++|.|||+||.++
T Consensus 81 ~gtm~r~~~~ar~sg~~l~~~m~~f~lV~~fi~~~~lt 118 (118)
T KOG3385|consen 81 SGTMGRLKTMARRSGISLLCWMAVFSLVAFFILWVWLT 118 (118)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhheeeC
Confidence 99999999999997777799999999888888888764
No 2
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=5e-19 Score=135.93 Aligned_cols=91 Identities=21% Similarity=0.365 Sum_probs=80.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcc-hhHHHH
Q 033318 30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRR-MFTLVA 108 (122)
Q Consensus 30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~-~~~iv~ 108 (122)
.++++.+|||+.||.|+++|+++|++|..||+|+++|+.+||++++.||.|..+|.++++++.+|.+.++.+. ||+|++
T Consensus 142 ~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~ 221 (235)
T KOG3202|consen 142 LQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILL 221 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHH
Confidence 4688999999999999999999999999999999999999999999999999999999999999999777775 666666
Q ss_pred HHHHHHHHHHHH
Q 033318 109 SFVVIFLIVYYL 120 (122)
Q Consensus 109 l~v~lf~il~~l 120 (122)
+++++++++.++
T Consensus 222 l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 222 LVGLLLLVVIIF 233 (235)
T ss_pred HHHHHHHHHHHh
Confidence 665555444443
No 3
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.49 E-value=3.1e-13 Score=83.62 Aligned_cols=61 Identities=28% Similarity=0.489 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
|+|+.|+.|+++|..||+++.+|++||++|+.+||+|+++|+.+...+.++++++.++.+.
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999999999999999999999875
No 4
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.25 E-value=3.5e-11 Score=72.83 Aligned_cols=58 Identities=21% Similarity=0.412 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
+++++.++.|+.+|..|+.++.+|+.||.+|+.+||.++++++.+...++.+.+++.+
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k 59 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK 59 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999999976
No 5
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.19 E-value=1.9e-10 Score=70.60 Aligned_cols=62 Identities=21% Similarity=0.373 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
..+++++|+.++.|+..+..+++++.+|+.||.+|+.+||.++++++.+...++.+.+++.+
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~ 65 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK 65 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 56789999999999999999999999999999999999999999999999999999999876
No 6
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=6.9e-11 Score=92.84 Aligned_cols=69 Identities=17% Similarity=0.291 Sum_probs=65.4
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 27 SSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 27 ~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.+..++..+.|+|+.|+.|+.-+++||++|.+||.||+.||..||+|++.+|+...+|..+.+|+++++
T Consensus 205 ~~q~~~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 205 AYQTEPAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hhccCChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 555788889999999999999999999999999999999999999999999999999999999999874
No 7
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=99.13 E-value=1e-09 Score=84.86 Aligned_cols=89 Identities=15% Similarity=0.226 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHH
Q 033318 34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVI 113 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~l 113 (122)
-+..||+..++|.+-++.||+.+..+++-|++-+..|+.....+++....++.+.+|++...+++.+|+.|+++++++++
T Consensus 161 ~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~ 240 (251)
T PF09753_consen 161 HRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIV 240 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999998877666566666777778
Q ss_pred HHHHHHHhC
Q 033318 114 FLIVYYLTR 122 (122)
Q Consensus 114 f~il~~l~k 122 (122)
|+++++++|
T Consensus 241 Fi~mvl~ir 249 (251)
T PF09753_consen 241 FIMMVLFIR 249 (251)
T ss_pred HHHHHHHhe
Confidence 888888876
No 8
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=1e-07 Score=75.35 Aligned_cols=85 Identities=12% Similarity=0.276 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh-cCCcchhHHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET-KSSRRMFTLVASFVVIF 114 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~-~~~~~~~~iv~l~v~lf 114 (122)
.|-|+.+-.+..+|..|.++..+++.-|-+|...+|+++.++++|...++.+.+.+.|.-.. +.++++|+|.++++++|
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii 293 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLII 293 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHH
Confidence 34577788999999999999999999999999999999999999999999999999999863 44455555544444444
Q ss_pred HHHHHH
Q 033318 115 LIVYYL 120 (122)
Q Consensus 115 ~il~~l 120 (122)
+++.++
T Consensus 294 ~llvll 299 (305)
T KOG0809|consen 294 ALLVLL 299 (305)
T ss_pred HHHHHH
Confidence 444443
No 9
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=3.3e-07 Score=72.97 Aligned_cols=78 Identities=15% Similarity=0.365 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH---hcCCcchhHHHHHHHHHHHH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE---TKSSRRMFTLVASFVVIFLI 116 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~---~~~~~~~~~iv~l~v~lf~i 116 (122)
+.+-.|..++..|+++..+|.-.|+.|..++|.++.++.++..-+..+...+++..+ ++..|++|++++++++++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~ 285 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVL 285 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHH
Confidence 345669999999999999999999999999999999999999999999999997764 23333344444444333333
Q ss_pred H
Q 033318 117 V 117 (122)
Q Consensus 117 l 117 (122)
+
T Consensus 286 v 286 (297)
T KOG0810|consen 286 V 286 (297)
T ss_pred h
Confidence 3
No 10
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.59 E-value=1e-06 Score=69.58 Aligned_cols=82 Identities=16% Similarity=0.393 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc-CCcchhHHHHHHHHHHHHHH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK-SSRRMFTLVASFVVIFLIVY 118 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~-~~~~~~~iv~l~v~lf~il~ 118 (122)
..+..|++++.-|..+...+-.-|.+|.+++-++++.|+.+...+..+...|-|.++.= ++|++++=||+++++||++|
T Consensus 227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvf 306 (311)
T KOG0812|consen 227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVF 306 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 34556999999999999999999999999999999999999999999999999999874 45554444777777888888
Q ss_pred HHh
Q 033318 119 YLT 121 (122)
Q Consensus 119 ~l~ 121 (122)
|++
T Consensus 307 vlf 309 (311)
T KOG0812|consen 307 VLF 309 (311)
T ss_pred HHh
Confidence 875
No 11
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.56 E-value=1.2e-06 Score=68.85 Aligned_cols=85 Identities=13% Similarity=0.298 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH---hcCCcchhHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE---TKSSRRMFTLVA 108 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~---~~~~~~~~~iv~ 108 (122)
+.+..|-|+.+..|+.+|.-|..+..+++.=|.+|..+.|.++.++++|+.-++.|.+.|.+.-. +.+.|++|++++
T Consensus 187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli 266 (283)
T COG5325 187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI 266 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence 33455669999999999999999999999999999999999999999999999999999999985 233445666666
Q ss_pred HHHHHHHH
Q 033318 109 SFVVIFLI 116 (122)
Q Consensus 109 l~v~lf~i 116 (122)
++|++.|+
T Consensus 267 l~vv~lfv 274 (283)
T COG5325 267 LLVVLLFV 274 (283)
T ss_pred HHHHHHHH
Confidence 55555443
No 12
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=4e-06 Score=65.94 Aligned_cols=80 Identities=10% Similarity=0.137 Sum_probs=66.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh--cCCcchhHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET--KSSRRMFTLVAS 109 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~--~~~~~~~~iv~l 109 (122)
..+.+|-++.+..|+..+.-+..|..+++.=|.+|..+.|.++.+++++..-+..+++.|.+..+. +..++.|+++++
T Consensus 172 ~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v 251 (269)
T KOG0811|consen 172 LDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLV 251 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHH
Confidence 344566778888999999999999999999999999999999999999999999999999999963 223334555444
Q ss_pred HH
Q 033318 110 FV 111 (122)
Q Consensus 110 ~v 111 (122)
++
T Consensus 252 ~~ 253 (269)
T KOG0811|consen 252 GG 253 (269)
T ss_pred HH
Confidence 33
No 13
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=98.22 E-value=1.5e-05 Score=61.62 Aligned_cols=80 Identities=9% Similarity=0.219 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh----cCCcchhHHHHHHHHHH
Q 033318 39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET----KSSRRMFTLVASFVVIF 114 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~----~~~~~~~~iv~l~v~lf 114 (122)
-+.+-.|..++..|-++..+|..+|.+|..+.|-++.++..++..+..+...+.+.++. +..++.||.+|+++++|
T Consensus 184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~v 263 (280)
T COG5074 184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999988888763 23445888888877665
Q ss_pred HHHH
Q 033318 115 LIVY 118 (122)
Q Consensus 115 ~il~ 118 (122)
++.+
T Consensus 264 iv~v 267 (280)
T COG5074 264 IVVV 267 (280)
T ss_pred HHHH
Confidence 5443
No 14
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=98.03 E-value=6.3e-05 Score=57.70 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcc-hhHHHHHHHHHHHH
Q 033318 38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRR-MFTLVASFVVIFLI 116 (122)
Q Consensus 38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~-~~~iv~l~v~lf~i 116 (122)
|++..+.|.+-++.||..+.+-++=+++-|..+..+...+|.....|..+..++.+-.++.+..+ .|.+++++|+.|+.
T Consensus 153 QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVs 232 (244)
T KOG2678|consen 153 QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVS 232 (244)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 45666778888899999999999999999999999999999999999999999999998776433 44445555666666
Q ss_pred HHHHh
Q 033318 117 VYYLT 121 (122)
Q Consensus 117 l~~l~ 121 (122)
+++++
T Consensus 233 Milii 237 (244)
T KOG2678|consen 233 MILII 237 (244)
T ss_pred HHHHH
Confidence 66655
No 15
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.86 E-value=0.00054 Score=45.44 Aligned_cols=83 Identities=13% Similarity=0.220 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~ 119 (122)
+.|......++.--..+..--+++.+|+..|..+++.++.....++.+.+-++++-++...=++++.+.|++++..++|+
T Consensus 8 ~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI 87 (92)
T PF03908_consen 8 ESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYI 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444444444566667788999999999999999999999999999999998765543444444444444555555
Q ss_pred HhC
Q 033318 120 LTR 122 (122)
Q Consensus 120 l~k 122 (122)
+.|
T Consensus 88 ~~r 90 (92)
T PF03908_consen 88 LWR 90 (92)
T ss_pred hhh
Confidence 543
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.54 E-value=0.0012 Score=43.19 Aligned_cols=57 Identities=18% Similarity=0.314 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh---hHHhhhhhhhhHHHHHHHHHH
Q 033318 39 ERALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGN---DMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~---~~d~t~~~L~~~~krl~kv~~ 96 (122)
++.+..+.+.|...++ +..+|..-++..+ -|+.|.+ ++........+..+++++-..
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge-~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGE-KLEELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3556677777777777 5556654444443 4555554 445555566666666665554
No 17
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0023 Score=49.15 Aligned_cols=88 Identities=13% Similarity=0.234 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcC-CcchhHHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKS-SRRMFTLVASF 110 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~-~~~~~~iv~l~ 110 (122)
+.+..|.+ .++.=...|..+=.+|.+-.+-+..|..+|..+++.+..+..++=....=+.++-.++. ..-++..|+.+
T Consensus 142 e~~lkE~~-~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~ 220 (231)
T KOG3208|consen 142 EMYLKEHD-HINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISV 220 (231)
T ss_pred HHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 44444443 45555566677778899999999999999999999999999998888777777754332 33466677888
Q ss_pred HHHHHHHHHH
Q 033318 111 VVIFLIVYYL 120 (122)
Q Consensus 111 v~lf~il~~l 120 (122)
|++|+++||+
T Consensus 221 C~llllfy~~ 230 (231)
T KOG3208|consen 221 CTLLLLFYWI 230 (231)
T ss_pred HHHHHHHHHh
Confidence 8889999987
No 18
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.033 Score=44.79 Aligned_cols=85 Identities=16% Similarity=0.239 Sum_probs=58.3
Q ss_pred hhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCC
Q 033318 31 HEIDEHDNERALEGLQ----------DRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSS 100 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~----------~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~ 100 (122)
.++++.|+-..+..+. .++--+-.+-..+-+-|-.|..-+|.|.+..+.+..-++.++..+.+..+.++.
T Consensus 213 ~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~ 292 (316)
T KOG3894|consen 213 VQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGG 292 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhccc
Confidence 3556666655544444 333333344455667788899999999999999999999999999999987766
Q ss_pred cchhHHHHHHHHHHH
Q 033318 101 RRMFTLVASFVVIFL 115 (122)
Q Consensus 101 ~~~~~iv~l~v~lf~ 115 (122)
-+-|++++++|.-|+
T Consensus 293 ~r~~~lf~llvlsf~ 307 (316)
T KOG3894|consen 293 LRVFLLFFLLVLSFS 307 (316)
T ss_pred chhHHHHHHHHHHHH
Confidence 544444444443333
No 19
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=96.45 E-value=0.063 Score=33.01 Aligned_cols=59 Identities=12% Similarity=0.195 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.+.|+.=...+...-.+|.++..++..|...|......++.+...+..+.+-++++.++
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 33667777778888889999999999999999999999999999999998888887653
No 20
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.047 Score=41.77 Aligned_cols=86 Identities=14% Similarity=0.190 Sum_probs=58.1
Q ss_pred cccccccCC-ccCCCccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 033318 9 NSKVALFDG-IEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGT 87 (122)
Q Consensus 9 ~~r~~l~~g-~~~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~ 87 (122)
.+|..|.++ .|.+.-.-+.++.++ .+-+..+..=+..+..+=..|.+|=+-+.+|+..|-.....|-...+.|.=+
T Consensus 100 ~er~~lL~~~~~~~~~~~~~~~D~e---l~~~d~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlS 176 (213)
T KOG3251|consen 100 RERVELLDRRFTNGATGTSIPFDEE---LQENDSLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLS 176 (213)
T ss_pred HHHHHHhcCCCCCCCccCCCcchHH---HHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 347777777 232222223322221 2334456666777777788899999999999999999999999988888766
Q ss_pred HHHHHHHHHh
Q 033318 88 MDKFKMVFET 97 (122)
Q Consensus 88 ~krl~kv~~~ 97 (122)
..=|.-+-++
T Consensus 177 n~ti~lIeRR 186 (213)
T KOG3251|consen 177 NQTIRLIERR 186 (213)
T ss_pred HHHHHHHHHH
Confidence 6555555444
No 21
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=0.062 Score=37.48 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhh---hhhhHHHHHHHHH
Q 033318 58 DINEEVDTHNRMLERMGNDMDASRG---VLSGTMDKFKMVF 95 (122)
Q Consensus 58 ~I~~El~~Qn~lLD~l~~~~d~t~~---~L~~~~krl~kv~ 95 (122)
++..=++.+.+ ||+|++..|..+. ..+++..++++-.
T Consensus 48 NV~KVlER~ek-L~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 48 NVEKVLERGEK-LDELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred hHHHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 6666665555443 4555555665444
No 22
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.097 Score=40.13 Aligned_cols=67 Identities=16% Similarity=0.295 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcC-CcchhHHHHHH--HHHHHHHHHH
Q 033318 54 RLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKS-SRRMFTLVASF--VVIFLIVYYL 120 (122)
Q Consensus 54 ~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~-~~~~~~iv~l~--v~lf~il~~l 120 (122)
++|..|-.++..|-..|..-....-.+++-|.++.+-+.-+.++.- ++..|++|+++ +++++++|+-
T Consensus 149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~k 218 (220)
T KOG1666|consen 149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677888899999999999999999999999999999999987643 44555554333 3444445543
No 23
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=95.63 E-value=0.15 Score=32.24 Aligned_cols=61 Identities=11% Similarity=0.327 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHhC
Q 033318 59 INEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 59 I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~l~k 122 (122)
+...++.+.+-++.++..-+.....+.+..+++.++-... ++.|.+++..+ +.+++++++|
T Consensus 11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~--kW~~r~iiGai-I~~i~~~i~K 71 (71)
T PF10779_consen 11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT--KWIWRTIIGAI-ITAIIYLIIK 71 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHhC
Confidence 3444455555666666666666667777777777774422 23333333333 4444566554
No 24
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.23 E-value=0.33 Score=33.88 Aligned_cols=56 Identities=11% Similarity=0.216 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTM 88 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~ 88 (122)
+...+|-|+-.+-+...|...-.=+..+ +||++--+-|..-.+.|.++..+|++-+
T Consensus 32 ~~tq~QvdeVv~IMr~NV~KVlER~ekL-~~L~drad~L~~~as~F~~~A~klkrk~ 87 (116)
T KOG0860|consen 32 QQTQAQVDEVVDIMRENVEKVLERGEKL-DELDDRADQLQAGASQFEKTAVKLKRKM 87 (116)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888888888777666555 6788888889999999999999998855
No 25
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=94.51 E-value=0.83 Score=30.00 Aligned_cols=56 Identities=13% Similarity=0.136 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHhhhhhhhhHH
Q 033318 33 IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH-NRMLERMGNDMDASRGVLSGTM 88 (122)
Q Consensus 33 ~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~~~ 88 (122)
.+.++-++..+.+..-+..++..+....+++.+. ...++............+....
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~ 58 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQA 58 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888777777777766 3355555555544444443333
No 26
>PRK00846 hypothetical protein; Provisional
Probab=91.73 E-value=2.1 Score=27.72 Aligned_cols=54 Identities=13% Similarity=0.102 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 033318 34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGT 87 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~ 87 (122)
..++.++.|+.|..++.-.-..--.+|+.|-.|...+|.|...+.....+|+..
T Consensus 7 ~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 7 RDQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677899999999999999999999999999999999988887777766554
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=91.71 E-value=3.9 Score=31.03 Aligned_cols=60 Identities=13% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 36 HDNERALEGLQDRV----NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v----~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.+.++++..+...+ ...++....+.+++.+.+..+.+|...-++....+..+.++...+-
T Consensus 96 p~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~ 159 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAAN 159 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 4445566777777777788888888888888888877777776543
No 28
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=1.7 Score=33.45 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~ 119 (122)
.++.+..-+..++. ++.+|++ |-.-+..|+.+...-+.....-+.-.+..+.+....-...++.++++.++++|++++
T Consensus 135 n~~~~n~el~~v~~im~~nied-vl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~~l~f~~~f 213 (216)
T KOG0862|consen 135 NLLKLNQELQDVQRIMVENLED-VLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFVLLLFYVRF 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH-HHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555 4455544 444444566666555554444444444444444444444455666666666666555
Q ss_pred H
Q 033318 120 L 120 (122)
Q Consensus 120 l 120 (122)
+
T Consensus 214 ~ 214 (216)
T KOG0862|consen 214 I 214 (216)
T ss_pred h
Confidence 4
No 29
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=91.23 E-value=5.6 Score=30.63 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh----cCCcchhHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET----KSSRRMFTLV 107 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~----~~~~~~~~iv 107 (122)
+...+.++..-+.|.+.+ -.+|..+..-...=+..|.+=...++.+...+.++...|+....+ .+.++.|+..
T Consensus 155 e~~l~~~~~~QE~L~~em---~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~ 231 (251)
T PF09753_consen 155 EKILQHHRNLQEDLTEEM---LSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTW 231 (251)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 333456666677777664 456778888777778888888999999999999999999877753 2333467777
Q ss_pred HHHHHHHHHHHHHh
Q 033318 108 ASFVVIFLIVYYLT 121 (122)
Q Consensus 108 ~l~v~lf~il~~l~ 121 (122)
+++++++++|+++|
T Consensus 232 ~~i~~v~~~Fi~mv 245 (251)
T PF09753_consen 232 LMIFVVIIVFIMMV 245 (251)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666554
No 30
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=90.90 E-value=3.3 Score=27.36 Aligned_cols=76 Identities=12% Similarity=0.361 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHN---RMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIV 117 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn---~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il 117 (122)
++|.+..++.+.+.-=..|..-+..-. .-=..++..+......+..-=++++.+-+ .+++-+.+...+++++|++
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk--ENrK~~~ls~~l~~v~~Lv 83 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK--ENRKSMLLSVALFFVCFLV 83 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH--hhhhhHHHHHHHHHHHHHH
Confidence 345555555555544434333332210 11134557777888888888888887765 3334344444434444444
Q ss_pred H
Q 033318 118 Y 118 (122)
Q Consensus 118 ~ 118 (122)
|
T Consensus 84 Y 84 (85)
T PF15188_consen 84 Y 84 (85)
T ss_pred c
Confidence 4
No 31
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=90.58 E-value=2.3 Score=29.05 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 85 (122)
.|.++++.|.+.|..+-..=.....|++.|...|+-+...+...+.+|.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666667777777777666666665555543
No 32
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.32 E-value=2.7 Score=26.27 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 033318 38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTM 88 (122)
Q Consensus 38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~ 88 (122)
.++.++.|..++.-+-..-..+++.|-.|...||.|...+.....+|+...
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999988888888777643
No 33
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=90.31 E-value=4.3 Score=27.78 Aligned_cols=90 Identities=12% Similarity=0.111 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc-CCcchhHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH-NRMLERMGNDMDASRGVLSGTMDKFKMVFETK-SSRRMFTLVAS 109 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~-~~~~~~~iv~l 109 (122)
+.++.|..+.++.+.+-++.=-..|.+=.+|++.. +..|.+..+.+..+...+....+..-...... ..+.||.|-+.
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~PWq~VGva 90 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENPWQGVGVA 90 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence 45566666666666666655556667777777777 66899999999888877766666555554432 23357877665
Q ss_pred HHHHHHHHHHHh
Q 033318 110 FVVIFLIVYYLT 121 (122)
Q Consensus 110 ~v~lf~il~~l~ 121 (122)
..+-||+=.++.
T Consensus 91 AaVGlllGlLls 102 (104)
T COG4575 91 AAVGLLLGLLLS 102 (104)
T ss_pred HHHHHHHHHHHh
Confidence 555555544443
No 34
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=90.16 E-value=3.6 Score=29.02 Aligned_cols=61 Identities=18% Similarity=0.375 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
-.+.-+.||.+..++...+.++..|.+||.+=..-++.+..+++..+..+..--.++..+-
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466678888999999999999999999988888888888888888888877777766553
No 35
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=90.03 E-value=4.3 Score=27.37 Aligned_cols=46 Identities=11% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhh
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASR 81 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~ 81 (122)
.|+|..+-.|...-...++--..|.+-+..|+...+.|+-.+|+..
T Consensus 7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~ 52 (98)
T PF11166_consen 7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN 52 (98)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence 4788889999999989998888999999999999999999998843
No 36
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=89.71 E-value=1.3 Score=28.65 Aligned_cols=50 Identities=18% Similarity=0.361 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318 36 HDNERALEGLQDRVNLLKRLSGD---INEEVDTHNRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~---I~~El~~Qn~lLD~l~~~~d~t~~~L~ 85 (122)
.+-|+..+.|...|..++.--.+ |++-++.|..-|+.++..++..+..|+
T Consensus 14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~ 66 (75)
T PF05531_consen 14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 56788899999999988886555 889999999999999998888777664
No 37
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.40 E-value=9.1 Score=30.35 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIF 114 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf 114 (122)
.++.+..+-++..-...|..+-.+=|+-|+.=..-++....++......|.+|.+-=.+..+.. -...|++++++++++
T Consensus 182 I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~-~~ll~v~~~v~lii~ 260 (269)
T KOG0811|consen 182 IEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK-CILLLVGGPVGLIIG 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhHHHHHHHHHHH
Confidence 4566777777777777777777777777777777788888888888888888777666555544 224666666666666
Q ss_pred HHHHHHh
Q 033318 115 LIVYYLT 121 (122)
Q Consensus 115 ~il~~l~ 121 (122)
+++|.+.
T Consensus 261 l~i~~~~ 267 (269)
T KOG0811|consen 261 LIIAGIA 267 (269)
T ss_pred HHHHHhh
Confidence 6666553
No 38
>PRK00736 hypothetical protein; Provisional
Probab=88.91 E-value=3.8 Score=25.71 Aligned_cols=48 Identities=19% Similarity=0.282 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
++.++.|..++.-+-..--.+++.|-.|.+.||.|...+.....+++.
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999888777766666644
No 39
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=88.71 E-value=7.6 Score=28.40 Aligned_cols=52 Identities=21% Similarity=0.354 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 35 EHDNERALEGLQDRVNLLKR-LSGD-------INEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~-~a~~-------I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
..+-|..=+.|..-+..++. +-.+ +.+|...++.-+.++++.++.--+.|+.
T Consensus 86 ~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~ 145 (177)
T PF07798_consen 86 QREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444 3333 3444444444444444444444333333
No 40
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=88.58 E-value=8.6 Score=30.10 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=8.2
Q ss_pred hhhhhhhHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMV 94 (122)
Q Consensus 80 t~~~L~~~~krl~kv 94 (122)
.+.++++.+|.+.-+
T Consensus 250 ~s~~~N~~mk~LTvv 264 (318)
T TIGR00383 250 VNNKMNEIMKILTVV 264 (318)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344666666665543
No 41
>PRK04325 hypothetical protein; Provisional
Probab=88.33 E-value=4.8 Score=25.63 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.++.++.|..++.-+-..-..+++.|-.|.+.|+.|...+.....+++.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466999999999999999999999999999998888776666555544
No 42
>PRK00295 hypothetical protein; Provisional
Probab=87.06 E-value=5.5 Score=24.93 Aligned_cols=48 Identities=19% Similarity=0.220 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
++.++.|..++.-+-..-..+++.|-.|.+.||.|...+.....+++.
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999999888777776665554
No 43
>PRK02119 hypothetical protein; Provisional
Probab=86.85 E-value=6 Score=25.14 Aligned_cols=51 Identities=12% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
...++.++.|..++.-+-..-..+|+.|-.|.+.||.|...+.....+++.
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999998888777666555544
No 44
>PRK04406 hypothetical protein; Provisional
Probab=86.09 E-value=6.9 Score=25.06 Aligned_cols=49 Identities=12% Similarity=0.306 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 85 (122)
..++.++.|..++.-+-..-..+|+.|-.|...||.|...+.....+++
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999888877766655554
No 45
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=85.81 E-value=14 Score=29.10 Aligned_cols=74 Identities=8% Similarity=0.121 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCc-chhHHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSR-RMFTLVASFVVI 113 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~-~~~~iv~l~v~l 113 (122)
++|.-+.+..++.-|.....+--.|.+ -+.+...++.....-+.++.+-..+.-++.-.+ .+|++++.+++.
T Consensus 194 ~ael~qLfndm~~~V~eq~e~Vd~I~~-------~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~ 266 (280)
T COG5074 194 MAELTQLFNDMEELVIEQQENVDVIDK-------NVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVV 266 (280)
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHh-------hHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHH
Confidence 445555555555555555444444444 455566777777778888888888888877766 477776655554
Q ss_pred HH
Q 033318 114 FL 115 (122)
Q Consensus 114 f~ 115 (122)
|+
T Consensus 267 vv 268 (280)
T COG5074 267 VV 268 (280)
T ss_pred HH
Confidence 44
No 46
>PRK02793 phi X174 lysis protein; Provisional
Probab=85.75 E-value=6.9 Score=24.77 Aligned_cols=50 Identities=16% Similarity=0.244 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
+.++.++.|..++.-+-..-..+++.|-.|...||.+...+.....+++.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999898888776666555543
No 47
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.36 E-value=8.2 Score=29.73 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=20.4
Q ss_pred HHHHhhhh---hHHhhhhhhhhHHHHHHHHHHh
Q 033318 68 RMLERMGN---DMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 68 ~lLD~l~~---~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.+|.+|+. ...++..+|..+...+.+-.+.
T Consensus 153 ~IL~dL~~QRe~L~rar~rL~~td~~lgkS~ki 185 (220)
T KOG1666|consen 153 EILEDLHGQREQLERARERLRETDANLGKSRKI 185 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHH
Confidence 36777775 4556667777777777776654
No 48
>PRK10132 hypothetical protein; Provisional
Probab=80.85 E-value=15 Score=25.10 Aligned_cols=54 Identities=4% Similarity=0.047 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHhhhhhhh
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH-NRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~ 85 (122)
..++.+.++..++|..-+..+..+-..-.++..++ ..+=+.++...+.+..++.
T Consensus 8 ~~~~~q~e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~ 62 (108)
T PRK10132 8 NDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMH 62 (108)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666666666644433333333222 2233444445555554444
No 49
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.36 E-value=26 Score=28.28 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDK 90 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~kr 90 (122)
-...|+..|+....+..-|-+-++ +.+-+++.+...|-+...+
T Consensus 242 IF~QLA~mVseQ~E~i~RID~nv~-------ds~lnI~gA~~ellKy~e~ 284 (311)
T KOG0812|consen 242 IFQQLASMVSEQEETIQRIDDNVD-------DSDLNIEGAHSELLKYFER 284 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcch-------hhhhhhHHHHHHHHHHHHH
Confidence 333444445544555555544444 4444444444444443333
No 50
>PF15106 TMEM156: TMEM156 protein family
Probab=78.24 E-value=1.9 Score=33.18 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033318 103 MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~k 122 (122)
.||+.+++|++|++++.++|
T Consensus 177 TWYvLVllVfiflii~iI~K 196 (226)
T PF15106_consen 177 TWYVLVLLVFIFLIILIIYK 196 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888877765
No 51
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=78.00 E-value=2.3 Score=31.12 Aligned_cols=19 Identities=32% Similarity=0.721 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 033318 102 RMFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 102 ~~~~iv~l~v~lf~il~~l 120 (122)
++|+|++.+++++.++|++
T Consensus 30 hm~tILiaIvVliiiiivl 48 (189)
T PF05568_consen 30 HMYTILIAIVVLIIIIIVL 48 (189)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5788776666555555544
No 52
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=77.44 E-value=16 Score=23.38 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHH
Q 033318 33 IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMD 89 (122)
Q Consensus 33 ~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~k 89 (122)
.+.++-++--+.+.+.+..+-.-+..+. ++++...-|.+-...|.+...++++.+-
T Consensus 7 ~i~~~v~~v~~im~~Ni~~ll~Rge~L~-~L~~kt~~L~~~a~~F~k~a~~l~r~~~ 62 (89)
T PF00957_consen 7 QIQEQVEEVKNIMRENIDKLLERGEKLE-ELEDKTEELSDNAKQFKKNAKKLKRKMW 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4456666777777777777777766664 5666666788888888888888887763
No 53
>PRK11637 AmiB activator; Provisional
Probab=77.11 E-value=40 Score=27.82 Aligned_cols=55 Identities=5% Similarity=0.153 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
++.+...+..+..--..+..+++.-+.-|+.++...+.+...+....+.+.+.+.
T Consensus 77 l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 77 LKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444445555555555666666666666666666555655554
No 54
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=75.31 E-value=20 Score=24.82 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
++-...|..|...|..|..+-..++...+....+=+.|+.-++.+....+.+..+++.+-.
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~ 69 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEE 69 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888888777633346666777777777766666666666543
No 55
>PHA03386 P10 fibrous body protein; Provisional
Probab=74.46 E-value=10 Score=25.43 Aligned_cols=46 Identities=15% Similarity=0.303 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 85 (122)
++-|..++.|...|..++.- ++-++.|...|+.++..++..++.|+
T Consensus 15 kavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 15 QEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 56677788888888877765 45588888889988888888777665
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=73.84 E-value=33 Score=25.29 Aligned_cols=64 Identities=22% Similarity=0.293 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
..+.+..|..|...+..|+.--.+...|+.+.+..++.+.+.+...+-.++..-.++.++-.-+
T Consensus 111 ~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En 174 (194)
T PF08614_consen 111 LSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEEN 174 (194)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999999999999999999999999999999999999999888888876543
No 57
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=73.09 E-value=17 Score=23.10 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=22.1
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCc--chhHHHHHHHHHHHHHHH
Q 033318 67 NRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSR--RMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 67 n~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~--~~~~iv~l~v~lf~il~~ 119 (122)
++-||+++..++-+..-+.. -..++-.| .++|-+++.+++|+++..
T Consensus 18 ~~rLd~iEeKvEf~~~Ei~Q-------r~GkkiGRDiGIlYG~v~Glii~~~~~~ 65 (70)
T PF04210_consen 18 MKRLDEIEEKVEFTNAEIAQ-------RAGKKIGRDIGILYGLVIGLIIFIIYIV 65 (70)
T ss_pred HHHHHHHHHHHHhHHHHHHH-------HHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666665554432 22222222 366665555555544433
No 58
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.30 E-value=23 Score=22.70 Aligned_cols=49 Identities=10% Similarity=0.228 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
.+-++.|..|..++.-.-..=..+++-|-+|...+|.+...+.....++
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl 52 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKL 52 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888877776666777777777776666655554444433
No 59
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=72.19 E-value=44 Score=25.97 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHhh
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGD-INEEVDTHNRMLERMGNDMDAS 80 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~-I~~El~~Qn~lLD~l~~~~d~t 80 (122)
++++|..-..+..-...|+..+.+ +..+...|++.++-+.+..+.+
T Consensus 63 ~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V 109 (230)
T PF03904_consen 63 EEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDV 109 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333344443333 2234555666655555544443
No 60
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=71.45 E-value=8.4 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.389 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHHHHHh
Q 033318 87 TMDKFKMVFETKSSRR--MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 87 ~~krl~kv~~~~~~~~--~~~iv~l~v~lf~il~~l~ 121 (122)
+....+++.+.+.++. -.++++.+++++|++|++.
T Consensus 46 ~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl~ 82 (87)
T PF11190_consen 46 AISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLLT 82 (87)
T ss_pred HHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3444445544444443 4455666777777777764
No 61
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=71.37 E-value=41 Score=25.32 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=8.9
Q ss_pred hhhhhhhHHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMVF 95 (122)
Q Consensus 80 t~~~L~~~~krl~kv~ 95 (122)
.+.+.+.+++++.-+.
T Consensus 226 ~~~~~n~~m~~LT~~t 241 (292)
T PF01544_consen 226 LSNRQNRVMKVLTIVT 241 (292)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666665443
No 62
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.25 E-value=44 Score=25.61 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTH 66 (122)
Q Consensus 30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q 66 (122)
.+..+..+-.+..+.++.+|+.|.+--..|..|=+.|
T Consensus 129 ~~a~l~a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~ 165 (215)
T KOG1690|consen 129 DHANLDAQIKETDKLLEGRVRQLNSRLESIRKEQNLQ 165 (215)
T ss_pred chhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888899999988888777776654433
No 63
>PRK04654 sec-independent translocase; Provisional
Probab=71.07 E-value=38 Score=26.05 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
+..-.++..++.+|+...++.+|+++.-. ++++...+......+
T Consensus 27 e~aRtlGk~irk~R~~~~~vk~El~~El~-~~ELrk~l~~~~~~i 70 (214)
T PRK04654 27 KAARFAGLWVRRARMQWDSVKQELERELE-AEELKRSLQDVQASL 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Confidence 34556788888888888888888866644 344444444333333
No 64
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=70.80 E-value=22 Score=23.03 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
..|-.|.+.|..|+.+...||.. .+-..+-+.++.-...+...++.+...++++...
T Consensus 3 ~~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~ 59 (102)
T PF14523_consen 3 SNLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNSL 59 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888888888866 4444577888888888888888888777777654
No 65
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=70.72 E-value=15 Score=26.31 Aligned_cols=63 Identities=21% Similarity=0.319 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 33 IDEHDNERALEGLQDRVNLLK-------RLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 33 ~l~~eqD~~Ld~L~~~v~~Lk-------~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.+..+....+|.+.+.+..|- .++.+|-.=..+||.+|++++...+.....++.-.-++.-++
T Consensus 45 ~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ylpkitsml 114 (177)
T PF12495_consen 45 QLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNTYLPKITSML 114 (177)
T ss_pred HHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 334444555565555555543 245555555689999999999999999988887666655444
No 66
>PHA03395 p10 fibrous body protein; Provisional
Probab=70.14 E-value=16 Score=24.19 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318 36 HDNERALEGLQDRVNLLKRLS---GDINEEVDTHNRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a---~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 85 (122)
.+-|+.++.|...|..++.-- ..|++.++.|...|+.++..++..+.-|+
T Consensus 14 kavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~diLn 66 (87)
T PHA03395 14 KAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDILN 66 (87)
T ss_pred HHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHccC
Confidence 466777888888888877543 36777788888888888888877665543
No 67
>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.
Probab=69.97 E-value=66 Score=27.09 Aligned_cols=56 Identities=25% Similarity=0.329 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 39 ERALEGLQDRVNLLKR-LSGDINEEVDTHNR-MLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~-lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.+.++.|+..+.+.-. +-..+.-+++.||. +|..|+.. .+.+-+|..+...+.-+.
T Consensus 311 ~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rR-a~lQLrLQqtVEGLSVvA 368 (420)
T PF11902_consen 311 ERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRR-ARLQLRLQQTVEGLSVVA 368 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHH
Confidence 3455556666655555 44567788888987 77777654 456778888777766543
No 68
>PHA03054 IMV membrane protein; Provisional
Probab=68.68 E-value=4.5 Score=25.85 Aligned_cols=12 Identities=8% Similarity=0.213 Sum_probs=4.5
Q ss_pred hhhHHhhhhhhh
Q 033318 74 GNDMDASRGVLS 85 (122)
Q Consensus 74 ~~~~d~t~~~L~ 85 (122)
+++|+.--+-++
T Consensus 17 d~Df~~Fi~vV~ 28 (72)
T PHA03054 17 EDDLTDFIEIVK 28 (72)
T ss_pred hHHHHHHHHHHH
Confidence 334433333333
No 69
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=68.67 E-value=4.7 Score=29.31 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHHHhC
Q 033318 102 RMFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 102 ~~~~iv~l~v~lf~il~~l~k 122 (122)
-+|.++.|++++|++.+|++|
T Consensus 21 ~~~~~i~Flil~~lL~~~l~k 41 (175)
T PRK14472 21 IFWTAVTFVIVLLILKKIAWG 41 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 456667777777777777653
No 70
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=68.23 E-value=4.7 Score=28.31 Aligned_cols=12 Identities=25% Similarity=0.517 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHh
Q 033318 110 FVVIFLIVYYLT 121 (122)
Q Consensus 110 ~v~lf~il~~l~ 121 (122)
+++++++++|++
T Consensus 77 vIg~Illi~y~i 88 (122)
T PF01102_consen 77 VIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 71
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.61 E-value=54 Score=25.20 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHhcC
Q 033318 82 GVLSGTMDKFKMVFETKS 99 (122)
Q Consensus 82 ~~L~~~~krl~kv~~~~~ 99 (122)
..|+.+.+|+..+.++=|
T Consensus 157 ~~L~~~~~ki~~~~ntLG 174 (213)
T KOG3251|consen 157 LTLKGTQKKILDILNTLG 174 (213)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 456777788877777543
No 72
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.47 E-value=64 Score=25.93 Aligned_cols=78 Identities=14% Similarity=0.088 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIF 114 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf 114 (122)
+.+..+.+|++---.+..+-..=++-|+.=..-...-.+.+++..+.+++|.+--++.-+..--..+|++++++|+++
T Consensus 210 ~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~ 287 (297)
T KOG0810|consen 210 KLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVV 287 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhh
Confidence 455555555554444444433333333333333444455566666666666555444444333334444444444333
No 73
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.20 E-value=28 Score=28.28 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=30.9
Q ss_pred HHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 033318 64 DTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 64 ~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~ 119 (122)
+.+-.+|-++..+.+..-..-+...+++.+.......+.+..+++...++.|+-||
T Consensus 259 ~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~lLFldwy 314 (316)
T KOG3894|consen 259 DQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSLLFLDWY 314 (316)
T ss_pred HHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhc
Confidence 33334444444444444455566666677777777777655555555555554443
No 74
>PHA02819 hypothetical protein; Provisional
Probab=66.82 E-value=6.7 Score=25.04 Aligned_cols=17 Identities=12% Similarity=0.339 Sum_probs=7.9
Q ss_pred hhhHHhhhhhhhhHHHH
Q 033318 74 GNDMDASRGVLSGTMDK 90 (122)
Q Consensus 74 ~~~~d~t~~~L~~~~kr 90 (122)
+++|+.--+-++.+...
T Consensus 17 DdDFnnFI~VVksVLtd 33 (71)
T PHA02819 17 DDDFNNFINVVKSVLNN 33 (71)
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 44444444444444444
No 75
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=65.69 E-value=8 Score=25.61 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033318 103 MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~k 122 (122)
|.-++.|++++||++.++.+
T Consensus 43 Wv~LA~FV~~lF~iL~~ms~ 62 (90)
T PF15183_consen 43 WVSLAAFVVFLFLILLYMSW 62 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33445666777777766643
No 76
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=65.66 E-value=65 Score=29.11 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 033318 51 LLKRLSGDINEEVDTH 66 (122)
Q Consensus 51 ~Lk~~a~~I~~El~~Q 66 (122)
.+|..-..+++++..+
T Consensus 361 ~ik~~l~~~~~~i~~~ 376 (806)
T PF05478_consen 361 PIKRDLDSIGKQIRSQ 376 (806)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333444444433
No 77
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=65.55 E-value=36 Score=22.43 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLER 72 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~ 72 (122)
..+.+...++.++.-+..-.+|...=|.=||.
T Consensus 39 kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN 70 (85)
T PRK09973 39 KIARLEQDMKALRPQIYAAKSEANRANTRLDA 70 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33334444444444444444444444444443
No 78
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=65.44 E-value=6 Score=28.80 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033318 103 MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~k 122 (122)
+|.+|.|++++|++.+|++|
T Consensus 22 ~~~iInFliL~~lL~~~l~~ 41 (173)
T PRK13453 22 IVTVLTFIVLLALLKKFAWG 41 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666653
No 79
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=65.01 E-value=6.4 Score=28.98 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 033318 104 FTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 104 ~~iv~l~v~lf~il~~l~ 121 (122)
|++|+|++++|++-+|++
T Consensus 36 ~~lI~F~iL~~ll~k~l~ 53 (181)
T PRK13454 36 WLLVTLVAIYFVLTRVAL 53 (181)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444443
No 80
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=64.96 E-value=35 Score=22.11 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=7.4
Q ss_pred chhHHHHHHHHHHHHHH
Q 033318 102 RMFTLVASFVVIFLIVY 118 (122)
Q Consensus 102 ~~~~iv~l~v~lf~il~ 118 (122)
-++.+.+|++++++|+|
T Consensus 73 i~~~~~~f~~~v~yI~~ 89 (92)
T PF03908_consen 73 IFFAFLFFLLVVLYILW 89 (92)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33444444444444443
No 81
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=64.32 E-value=56 Score=26.76 Aligned_cols=50 Identities=8% Similarity=0.275 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 44 GLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 44 ~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
.....+..|...-.+|..+++.-+.+|+.++..|......+....+.+..
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~ 382 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEE 382 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666677777777777777777777777776666666654
No 82
>PHA03240 envelope glycoprotein M; Provisional
Probab=63.90 E-value=7.2 Score=30.28 Aligned_cols=17 Identities=18% Similarity=0.747 Sum_probs=7.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYY 119 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~ 119 (122)
.|+|+++++++++|+++
T Consensus 214 ~WIiilIIiIiIIIL~c 230 (258)
T PHA03240 214 AWIFIAIIIIIVIILFF 230 (258)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45554444444444433
No 83
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=63.88 E-value=36 Score=21.77 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHN 67 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn 67 (122)
+.+.+++|...|..+-+.|.+|...-..++.++++=|
T Consensus 2 eNPhEe~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn 38 (72)
T PF08650_consen 2 ENPHEEQQSNLLSRIIGNVEKLNESVAELNQELEEIN 38 (72)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999888888887766543
No 84
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=63.83 E-value=71 Score=25.34 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcc
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRR 102 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~ 102 (122)
.+--++.|+.+...|..+..-...=...+.++-.-|.+.+..+ ..|......|.++++.+..++
T Consensus 8 ~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~----~~l~~~~~~L~~aL~~~k~rG 71 (304)
T PF02646_consen 8 LKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEI----QQLSQEASNLTSALKNSKTRG 71 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HHHHHHHHHHHHHHhCCCchh
Confidence 3444555555555555554443333344444444444444333 456666677777776444443
No 85
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=62.67 E-value=37 Score=21.58 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhhHHhhhhhh
Q 033318 62 EVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 62 El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
|.++=.+-||+++..++-+..-+
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~ 35 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEV 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333445677777666665544
No 86
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=62.36 E-value=7.7 Score=30.25 Aligned_cols=21 Identities=24% Similarity=0.475 Sum_probs=12.8
Q ss_pred cchhHHHHHHHHHHHHHHHHh
Q 033318 101 RRMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 101 ~~~~~iv~l~v~lf~il~~l~ 121 (122)
+.|...+++++++++++|+++
T Consensus 200 ~g~f~wl~i~~~l~~~~Y~i~ 220 (268)
T PF09451_consen 200 WGFFTWLFIILFLFLAAYLIF 220 (268)
T ss_pred ccHHHHHHHHHHHHHHHHhhh
Confidence 345555555566666777765
No 87
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=62.14 E-value=73 Score=24.78 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRL 55 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~ 55 (122)
++.++.++++..-.|..+......-
T Consensus 66 qd~reK~~~~I~ssL~eTtkdf~~~ 90 (230)
T PF03904_consen 66 QDIREKNLKEIKSSLEETTKDFIDK 90 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666666666655444433
No 88
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=61.57 E-value=5.1 Score=32.17 Aligned_cols=20 Identities=15% Similarity=0.595 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033318 103 MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~k 122 (122)
+++++.++++++|+.|+++|
T Consensus 280 iil~IG~vl~i~~Ig~~ifK 299 (305)
T PF04639_consen 280 IILIIGGVLLIVFIGYFIFK 299 (305)
T ss_pred HHHHHHHHHHHHHhhheeeE
Confidence 45556666777788888876
No 89
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=60.77 E-value=4.5 Score=34.65 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=14.0
Q ss_pred HHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 70 LERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 70 LD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
|..++++.+++.+.|.++.+-++.+-
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v~ 465 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSVN 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455555555555555555555443
No 90
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=60.53 E-value=45 Score=21.86 Aligned_cols=51 Identities=14% Similarity=0.275 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 45 LQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 45 L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
+...++.|..-=..+..|++....=.+.+...-..+..+|..++..++-++
T Consensus 37 ~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 37 LEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333335555555555555555555555556666665555554
No 91
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=60.30 E-value=45 Score=21.79 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
++-...|..|...|..|+.+-..+....+.-..+=++|+...+.+....+....+++.+-
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~ 70 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELE 70 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777777766542223334455555555555555555554443
No 92
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=60.26 E-value=54 Score=24.86 Aligned_cols=66 Identities=6% Similarity=0.142 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 32 EIDEHDNERALEGLQDRV-NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v-~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.-+-...++.++.....- +.+...-..+.++++.-+.-++.++..++.-..++.....+|..++.+
T Consensus 170 ~Gi~~~l~~~l~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~~ 236 (239)
T PF07195_consen 170 SGIATRLNDYLDSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLISQ 236 (239)
T ss_pred ccHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777788777776 888888899999999999999999999999999999999999888754
No 93
>PHA02967 hypothetical protein; Provisional
Probab=60.22 E-value=9.5 Score=26.99 Aligned_cols=23 Identities=17% Similarity=0.538 Sum_probs=15.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHhC
Q 033318 100 SRRMFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 100 ~~~~~~iv~l~v~lf~il~~l~k 122 (122)
.++.+++++=+++.++++||++|
T Consensus 25 ~kY~~Iv~FEi~val~L~~~FFk 47 (128)
T PHA02967 25 NKYFYILVFEVIVALIIINFFFK 47 (128)
T ss_pred ccchhHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777654
No 94
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=59.80 E-value=15 Score=21.78 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=13.7
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 033318 101 RRMFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 101 ~~~~~iv~l~v~lf~il~~l 120 (122)
.++|.+++.+.++|-+.|++
T Consensus 21 P~ww~~~f~~tivfa~~Y~~ 40 (51)
T PF14715_consen 21 PRWWLWLFYGTIVFAVGYLV 40 (51)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 35777777777777777765
No 95
>PRK11637 AmiB activator; Provisional
Probab=59.60 E-value=94 Score=25.67 Aligned_cols=35 Identities=6% Similarity=0.117 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 61 EEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 61 ~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.+++.-+.-|+.++..++.+...+....+++...-
T Consensus 89 ~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 89 RKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555544444444443
No 96
>PRK10884 SH3 domain-containing protein; Provisional
Probab=59.45 E-value=75 Score=24.05 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
+.++...++.+++...+....+ ++.+|.-| ......++..+.....+...
T Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~----L~~~n~~L---~~~l~~~~~~~~~l~~~~~~ 164 (206)
T PRK10884 115 TWNQRTAEMQQKVAQSDSVING----LKEENQKL---KNQLIVAQKKVDAANLQLDD 164 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666655554444 44444322 33444444444444333333
No 97
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=59.02 E-value=27 Score=22.99 Aligned_cols=7 Identities=0% Similarity=0.278 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 033318 90 KFKMVFE 96 (122)
Q Consensus 90 rl~kv~~ 96 (122)
++.++..
T Consensus 21 QL~qlVs 27 (84)
T PF06143_consen 21 QLEQLVS 27 (84)
T ss_pred HHHHHHH
Confidence 3444443
No 98
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=58.96 E-value=10 Score=26.87 Aligned_cols=23 Identities=9% Similarity=0.164 Sum_probs=15.8
Q ss_pred CcchhHHHHHHHHHHHHHHHHhC
Q 033318 100 SRRMFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 100 ~~~~~~iv~l~v~lf~il~~l~k 122 (122)
.++.+++++=++++++++||++|
T Consensus 28 ~kY~~Iv~FEi~va~~L~~~FFk 50 (128)
T PHA02689 28 ESYLAIAVLELLLALALALVFFR 50 (128)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777654
No 99
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=58.09 E-value=30 Score=20.06 Aligned_cols=32 Identities=9% Similarity=0.150 Sum_probs=16.7
Q ss_pred HHHHHHHhcCCc--chhHHHHHHHHHHHHHHHHh
Q 033318 90 KFKMVFETKSSR--RMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 90 rl~kv~~~~~~~--~~~~iv~l~v~lf~il~~l~ 121 (122)
.|+.+.++.+.. ++..-.+.++.+++.+-|+.
T Consensus 11 AMRNMVRKg~~SL~HF~LT~~gll~~lv~la~l~ 44 (45)
T PF11688_consen 11 AMRNMVRKGGTSLFHFGLTAVGLLGFLVGLAYLT 44 (45)
T ss_pred HHHHHHHccCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 345566655543 55544455555555555554
No 100
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=57.79 E-value=10 Score=25.40 Aligned_cols=9 Identities=33% Similarity=1.073 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 033318 111 VVIFLIVYY 119 (122)
Q Consensus 111 v~lf~il~~ 119 (122)
|+++++.||
T Consensus 76 Vily~IyYF 84 (101)
T PF06024_consen 76 VILYAIYYF 84 (101)
T ss_pred HHHhhheEE
Confidence 333444444
No 101
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=57.72 E-value=15 Score=21.21 Aligned_cols=16 Identities=31% Similarity=0.291 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 033318 106 LVASFVVIFLIVYYLT 121 (122)
Q Consensus 106 iv~l~v~lf~il~~l~ 121 (122)
+++++++++.+++|.+
T Consensus 15 ~v~~~~~F~gi~~w~~ 30 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAY 30 (49)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334444443
No 102
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=57.04 E-value=57 Score=21.92 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 033318 35 EHDNERALEGLQDRVNLL--KRLSGDINEEVDTHNRMLERMGNDMDAS 80 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~L--k~~a~~I~~El~~Qn~lLD~l~~~~d~t 80 (122)
..++|..++.+...+..| +.=-.++.-++.+.+.-++.|+..++..
T Consensus 44 ~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 44 LDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345566677777766666 5555555555555555555554444443
No 103
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=57.04 E-value=66 Score=22.64 Aligned_cols=60 Identities=17% Similarity=0.304 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKR-LSGD---INEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~-~a~~---I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.---.+|+.++++++.-|. ++.. +...+++|..+...+.+++..+...+...-..+..+-
T Consensus 46 ~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445566666666666554 4443 4567888888888888888888887777766666554
No 104
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=56.74 E-value=9.2 Score=28.14 Aligned_cols=16 Identities=13% Similarity=0.459 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHh
Q 033318 106 LVASFVVIFLIVYYLT 121 (122)
Q Consensus 106 iv~l~v~lf~il~~l~ 121 (122)
.++.+++.|+++||++
T Consensus 33 q~~~~lI~F~iL~~ll 48 (181)
T PRK13454 33 QIFWLLVTLVAIYFVL 48 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555566777777775
No 105
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=56.57 E-value=52 Score=21.32 Aligned_cols=21 Identities=5% Similarity=0.245 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhhhHHhhhhhh
Q 033318 64 DTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 64 ~~Qn~lLD~l~~~~d~t~~~L 84 (122)
++=++-||+++..++-|..-+
T Consensus 18 ~~i~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 18 KEIQKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333445666666666665544
No 106
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=56.26 E-value=10 Score=30.43 Aligned_cols=15 Identities=27% Similarity=0.450 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhC
Q 033318 108 ASFVVIFLIVYYLTR 122 (122)
Q Consensus 108 ~l~v~lf~il~~l~k 122 (122)
+++|+++++..|++|
T Consensus 270 il~vvliiLYiWlyr 284 (295)
T TIGR01478 270 ILTVVLIILYIWLYR 284 (295)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555666667765
No 107
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=56.19 E-value=12 Score=27.41 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l 120 (122)
+|.+|.|++++|++.||+
T Consensus 30 ~~~~inflil~~iL~~f~ 47 (184)
T PRK13455 30 FVVTLAFLLFIGILVYFK 47 (184)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455566666666666654
No 108
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=55.73 E-value=77 Score=23.03 Aligned_cols=30 Identities=3% Similarity=0.073 Sum_probs=19.2
Q ss_pred HHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 69 MLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 69 lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
....++..+..+..++......++.-+++.
T Consensus 121 e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~ 150 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDTEIANLRTEIESL 150 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666667777777776766666543
No 109
>PF08135 EPV_E5: Major transforming protein E5 family; InterPro: IPR012555 This family consists of the major transforming proteins (E5) of the bovine papilloma virus (BPV). The equine sarcoid is one of the most common dermatological lesion in equids. It is a benign, locally invasive dermal fibroblastic lesion and studies have shown an association of the lesions with BPV. E5 is a short hydrophobic membrane protein localising to the Golgi apparatus and other intracellular membranes. It binds to and constitutively activates the platelet-derived growth factor-beta in transformed cells. This stimulation activates a receptor signalling cascade which results in an intracellular growth stimulatory signal [].
Probab=55.72 E-value=15 Score=21.06 Aligned_cols=9 Identities=33% Similarity=1.172 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 033318 111 VVIFLIVYY 119 (122)
Q Consensus 111 v~lf~il~~ 119 (122)
.++||++||
T Consensus 24 lL~fFLV~W 32 (44)
T PF08135_consen 24 LLFFFLVYW 32 (44)
T ss_pred HHHHHHHHH
Confidence 344555554
No 110
>PTZ00370 STEVOR; Provisional
Probab=55.61 E-value=11 Score=30.37 Aligned_cols=15 Identities=27% Similarity=0.447 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhC
Q 033318 108 ASFVVIFLIVYYLTR 122 (122)
Q Consensus 108 ~l~v~lf~il~~l~k 122 (122)
+++|+++++..|++|
T Consensus 266 il~vvliilYiwlyr 280 (296)
T PTZ00370 266 ILAVVLIILYIWLYR 280 (296)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555666667765
No 111
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=55.43 E-value=55 Score=21.28 Aligned_cols=41 Identities=12% Similarity=0.312 Sum_probs=24.8
Q ss_pred HHHHHHHHHH-HHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 57 GDINEEVDTH-NRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 57 ~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
..+..-|++. ..+|++++.........|.....++..-+..
T Consensus 49 ~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~ 90 (127)
T smart00502 49 DELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEK 90 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 4477777777777767777666666655543
No 112
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.37 E-value=17 Score=22.46 Aligned_cols=18 Identities=17% Similarity=0.399 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 033318 105 TLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 105 ~iv~l~v~lf~il~~l~k 122 (122)
.++.++++++.++||++|
T Consensus 14 ~t~~~~l~fiavi~~ayr 31 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYR 31 (60)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 334444444445555543
No 113
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=54.73 E-value=9 Score=25.08 Aligned_cols=7 Identities=0% Similarity=0.225 Sum_probs=2.7
Q ss_pred HHHHhcC
Q 033318 93 MVFETKS 99 (122)
Q Consensus 93 kv~~~~~ 99 (122)
++++++.
T Consensus 3 ~i~kK~K 9 (96)
T PF13800_consen 3 KILKKAK 9 (96)
T ss_pred hHHHHHH
Confidence 3344333
No 114
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=54.29 E-value=72 Score=23.02 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=24.3
Q ss_pred HHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCc
Q 033318 69 MLERMGNDMDASRGVLSGTMDKFKMVFETKSSR 101 (122)
Q Consensus 69 lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~ 101 (122)
.++++..++.+-.-.+..+.++++++.+.....
T Consensus 69 ~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y 101 (193)
T PF06738_consen 69 AVNRLSRRIVAGQLSLEEAIERLDEIDREPPRY 101 (193)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCC
Confidence 456666677777778888899999998776443
No 115
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.27 E-value=1.4e+02 Score=25.39 Aligned_cols=61 Identities=3% Similarity=0.110 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
..+....+..+..++...+.....+.++|.+++.-++.++...-.+...+....+++....
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 3567777888888888888888888888888888888888888777777777666665544
No 116
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=54.16 E-value=60 Score=21.25 Aligned_cols=53 Identities=13% Similarity=0.221 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 45 LQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 45 L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
-..++..++.-+.+- -+|..|...|++...-+-.+..+|..+...|..++...
T Consensus 26 q~~rle~~k~~~~de-~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~ 78 (90)
T PF02970_consen 26 QEARLEKMKAEGEDE-YDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEE 78 (90)
T ss_dssp HHHHHHHHHHCTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHC
Confidence 344555555555543 37899999999999999999999999999999998653
No 117
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=53.72 E-value=15 Score=22.46 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l 120 (122)
-..+++++.++|++++.+
T Consensus 15 ~~lLiliis~~f~lI~~l 32 (61)
T PF06692_consen 15 GPLLILIISFVFFLITSL 32 (61)
T ss_pred hHHHHHHHHHHHHHHhhh
Confidence 345566666666666654
No 118
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=53.46 E-value=88 Score=22.99 Aligned_cols=62 Identities=11% Similarity=0.229 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcC
Q 033318 38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKS 99 (122)
Q Consensus 38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~ 99 (122)
..+..+.+...+..|+.....+.++++.-...|.+....+..-...++.-..++..++...+
T Consensus 101 d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~ 162 (184)
T PF05791_consen 101 DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGEN 162 (184)
T ss_dssp HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Confidence 56667788888999999999999999999999999999999999999998888888887554
No 119
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=53.18 E-value=30 Score=18.23 Aligned_cols=21 Identities=14% Similarity=0.479 Sum_probs=10.7
Q ss_pred chhHHHHHHHHHHHHHHHHhC
Q 033318 102 RMFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 102 ~~~~iv~l~v~lf~il~~l~k 122 (122)
-+|.=+-++++-.+++|+++|
T Consensus 7 el~lnftvvlitvilmwllvr 27 (31)
T PF05366_consen 7 ELFLNFTVVLITVILMWLLVR 27 (31)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhHHHHHHHHHHHHHH
Confidence 345444444444555666654
No 120
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=52.01 E-value=85 Score=22.41 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 033318 49 VNLLKRLSGDINEEVDTHNRMLERMGNDM 77 (122)
Q Consensus 49 v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~ 77 (122)
+..+.....+|.+-+.+|...+.++...+
T Consensus 144 ~~~i~~~i~~i~~~~~~~~~~~~~i~~~i 172 (213)
T PF00015_consen 144 VEEISDSIEEISESAEEQSESIEQINESI 172 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhhHHHHhhHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 121
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=51.97 E-value=12 Score=30.10 Aligned_cols=15 Identities=33% Similarity=0.704 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhC
Q 033318 108 ASFVVIFLIVYYLTR 122 (122)
Q Consensus 108 ~l~v~lf~il~~l~k 122 (122)
+++|++++|+|++.|
T Consensus 266 liIVLIMvIIYLILR 280 (299)
T PF02009_consen 266 LIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455566666643
No 122
>PRK09546 zntB zinc transporter; Reviewed
Probab=51.87 E-value=1.2e+02 Score=23.99 Aligned_cols=13 Identities=0% Similarity=0.120 Sum_probs=6.0
Q ss_pred hhhhhHHHHHHHH
Q 033318 82 GVLSGTMDKFKMV 94 (122)
Q Consensus 82 ~~L~~~~krl~kv 94 (122)
+++++.++.|.-+
T Consensus 258 ~~~N~~m~~Ltil 270 (324)
T PRK09546 258 EAMNRRTYTMSLM 270 (324)
T ss_pred HHHHHHHHHHHHH
Confidence 3444544444443
No 123
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=51.71 E-value=1.2e+02 Score=24.05 Aligned_cols=12 Identities=8% Similarity=0.097 Sum_probs=5.2
Q ss_pred hhhhhHHHHHHH
Q 033318 82 GVLSGTMDKFKM 93 (122)
Q Consensus 82 ~~L~~~~krl~k 93 (122)
++++..+|.+.-
T Consensus 256 ~~~N~imk~LTi 267 (322)
T COG0598 256 NNQNEIMKILTI 267 (322)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 124
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=51.68 E-value=9.3 Score=31.62 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhC
Q 033318 108 ASFVVIFLIVYYLTR 122 (122)
Q Consensus 108 ~l~v~lf~il~~l~k 122 (122)
+..+|-||.||||-|
T Consensus 380 VgglvGfLcWwf~cr 394 (397)
T PF03302_consen 380 VGGLVGFLCWWFICR 394 (397)
T ss_pred HHHHHHHHhhheeec
Confidence 333444555555543
No 125
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=51.44 E-value=24 Score=19.89 Aligned_cols=18 Identities=28% Similarity=0.652 Sum_probs=8.0
Q ss_pred hhHHH--HHHHHHHHHHHHH
Q 033318 103 MFTLV--ASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv--~l~v~lf~il~~l 120 (122)
.|++. +++|++.++++|+
T Consensus 11 lc~l~~llflv~imliif~f 30 (43)
T PF11395_consen 11 LCFLSFLLFLVIIMLIIFWF 30 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45553 3334444444443
No 126
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=51.43 E-value=73 Score=24.70 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=10.0
Q ss_pred hhH-HHHHHHHHHHHHHHHh
Q 033318 103 MFT-LVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~-iv~l~v~lf~il~~l~ 121 (122)
+|. +.++.++++-+.|+-+
T Consensus 200 ~Wv~l~iG~iIi~tLtYvGw 219 (232)
T PF09577_consen 200 IWVMLSIGGIIIATLTYVGW 219 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 444 3354555666666543
No 127
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=51.35 E-value=93 Score=22.67 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=20.4
Q ss_pred hhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 033318 32 EIDEHDNE-----RALEGLQDRVNLLKRLSGDINE 61 (122)
Q Consensus 32 ~~l~~eqD-----~~Ld~L~~~v~~Lk~~a~~I~~ 61 (122)
+.+++|-| +..+.+.....+|+.++..+.+
T Consensus 39 deldEEfD~~ps~~~~~~lr~Rydrlr~va~rvQ~ 73 (156)
T PF08372_consen 39 DELDEEFDTFPSSRPPDSLRMRYDRLRSVAGRVQN 73 (156)
T ss_pred chhhhhhcccccccccHHHHHHHHHHHHHHHHHHH
Confidence 55555554 3556688888888888877654
No 128
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=51.29 E-value=7.3 Score=26.01 Aligned_cols=7 Identities=29% Similarity=0.871 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 033318 114 FLIVYYL 120 (122)
Q Consensus 114 f~il~~l 120 (122)
|+++||+
T Consensus 85 ~l~w~f~ 91 (96)
T PTZ00382 85 FLCWWFV 91 (96)
T ss_pred HHhheeE
Confidence 4433433
No 129
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=51.12 E-value=18 Score=28.40 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=15.4
Q ss_pred cchhHHHHHHHHHHHHHHHHh
Q 033318 101 RRMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 101 ~~~~~iv~l~v~lf~il~~l~ 121 (122)
.+||..+|++.++|-++||++
T Consensus 27 P~ww~~~f~~~i~~~~~y~~~ 47 (285)
T TIGR00782 27 PRWWLWTFYATIVWGFGYLVA 47 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 457777777777888777764
No 130
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.67 E-value=56 Score=19.89 Aligned_cols=22 Identities=14% Similarity=0.311 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEE 62 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~E 62 (122)
.+|.|+.-|+.|+.--..|..|
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433333333
No 131
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=50.61 E-value=52 Score=21.61 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRL 55 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~ 55 (122)
...+..||.|.+.+..|..=
T Consensus 29 ~~ins~LD~Lns~LD~LE~r 48 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQR 48 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444455554444444443
No 132
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=50.32 E-value=62 Score=29.75 Aligned_cols=94 Identities=13% Similarity=0.134 Sum_probs=50.7
Q ss_pred ccccccccccc-cCCccCCCccC----CCccch-hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhh
Q 033318 4 RRDYRNSKVAL-FDGIEEGGIRA----SSSYSH-EIDEHDNERALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGND 76 (122)
Q Consensus 4 ~~~~~~~r~~l-~~g~~~~g~~~----~~~~~~-~~l~~eqD~~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~~ 76 (122)
++|-.++|++- |+--|.....- .-+.+| ..+-++....++.|.++++..-. +..++...+.++-.-+|.+...
T Consensus 315 ~~~l~sl~~~~~~~qlp~vd~~~~gm~~V~~sei~~~~q~~~s~~n~l~~kvq~q~s~vv~~~~r~l~q~~~~l~~~a~~ 394 (865)
T KOG4331|consen 315 VKTLPSLRSTPFFDQLPNVDAFLSGMPNVVTSEILQSVQRGNSLFNVLPDKVQYQTSGVVDDVMRDLPQIPGDLDGLAEK 394 (865)
T ss_pred HHhhhhhccChhhhhCCCchHHHhccccchHHHHHHHHHhhhhhhhhhhHHHhhcccccchHHHHHHHhCCchHHHHHhh
Confidence 45666677776 44433221111 111122 66678889999999999775433 4555555555555556666555
Q ss_pred HHh--hhhhhhhHHHHHHHHHHh
Q 033318 77 MDA--SRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 77 ~d~--t~~~L~~~~krl~kv~~~ 97 (122)
+.. +.........+.......
T Consensus 395 l~~ql~~~~~s~~~~k~~~~s~~ 417 (865)
T KOG4331|consen 395 LPSQLANSVFSGVTLKVEASSLR 417 (865)
T ss_pred ccHHHHHHHHHHHHHHHHHhhcc
Confidence 554 223333344444444443
No 133
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=49.54 E-value=21 Score=23.87 Aligned_cols=17 Identities=12% Similarity=0.712 Sum_probs=8.3
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYY 119 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~ 119 (122)
+|.+|+++.++.+++|+
T Consensus 36 ~~lvI~~iFil~Vilwf 52 (94)
T PF05393_consen 36 WFLVICGIFILLVILWF 52 (94)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444445555554
No 134
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=49.36 E-value=16 Score=26.42 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHhC
Q 033318 104 FTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 104 ~~iv~l~v~lf~il~~l~k 122 (122)
+.++-|+|+++++.|+++|
T Consensus 24 ~~iinflIl~~lL~~fl~k 42 (174)
T PRK07352 24 TNLINLAIVIGLLYYFGRG 42 (174)
T ss_pred HHHHHHHHHHHHHHHHhHH
Confidence 4455566666666666553
No 135
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=49.02 E-value=5.7 Score=24.90 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHh
Q 033318 109 SFVVIFLIVYYLT 121 (122)
Q Consensus 109 l~v~lf~il~~l~ 121 (122)
+++++++++++++
T Consensus 22 ll~ailLIlf~iy 34 (64)
T PF01034_consen 22 LLFAILLILFLIY 34 (64)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 136
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.63 E-value=1.2e+02 Score=23.26 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 033318 45 LQDRVNLLKR 54 (122)
Q Consensus 45 L~~~v~~Lk~ 54 (122)
+.+.|..+|.
T Consensus 130 vkaqv~evk~ 139 (217)
T KOG0859|consen 130 VKAQVTEVKG 139 (217)
T ss_pred HHHHHHHHHH
Confidence 4444555555
No 137
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=48.39 E-value=20 Score=24.33 Aligned_cols=13 Identities=46% Similarity=0.917 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 033318 108 ASFVVIFLIVYYL 120 (122)
Q Consensus 108 ~l~v~lf~il~~l 120 (122)
+.++++|.++||+
T Consensus 22 l~lvii~~i~yf~ 34 (106)
T PRK05585 22 LPLVVFFAIFYFL 34 (106)
T ss_pred HHHHHHHHHHHHH
Confidence 3444455555554
No 138
>PRK15396 murein lipoprotein; Provisional
Probab=48.37 E-value=73 Score=20.58 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDIN 60 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~ 60 (122)
+++.|..++.+++.-..++.
T Consensus 33 qV~~L~~kvdql~~dv~~~~ 52 (78)
T PRK15396 33 DVQTLNAKVDQLSNDVNAMR 52 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444433333333
No 139
>PRK01770 sec-independent translocase; Provisional
Probab=48.23 E-value=1.1e+02 Score=22.66 Aligned_cols=39 Identities=13% Similarity=0.333 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDA 79 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~ 79 (122)
+.+-.++..++.+|.++.++.+|++..-. ++++...+..
T Consensus 27 ~~~r~lg~~i~~~R~~~~~~k~e~~~E~~-~~El~~~l~~ 65 (171)
T PRK01770 27 VAVKTVAGWIRALRSLATTVQNELTQELK-LQELQDSLKK 65 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHH
Confidence 34566889999999999999999888765 5666554443
No 140
>PF10831 DUF2556: Protein of unknown function (DUF2556); InterPro: IPR022540 This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Probab=47.93 E-value=17 Score=21.51 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=7.4
Q ss_pred chhHHHHHHHHHHHH
Q 033318 102 RMFTLVASFVVIFLI 116 (122)
Q Consensus 102 ~~~~iv~l~v~lf~i 116 (122)
+.|++|+|.+++|++
T Consensus 4 ky~wlvvfav~~flf 18 (53)
T PF10831_consen 4 KYWWLVVFAVFVFLF 18 (53)
T ss_pred eehhHHHHHHHHHHH
Confidence 344555555555543
No 141
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=47.87 E-value=15 Score=27.64 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 033318 105 TLVASFVVIFLI 116 (122)
Q Consensus 105 ~iv~l~v~lf~i 116 (122)
.+|.|++++|++
T Consensus 59 ~~I~FliL~~lL 70 (204)
T PRK09174 59 LAITFGLFYLFM 70 (204)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 142
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=47.35 E-value=86 Score=27.95 Aligned_cols=64 Identities=9% Similarity=0.135 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+-...++.++...+.=+.+..-...+++.++..++-+++++..++....++......|..++.+
T Consensus 580 la~~l~~~l~~~t~~~G~i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msq 643 (661)
T PRK06664 580 VAKMLLEYLSPYTQAGGIIYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKK 643 (661)
T ss_pred HHHHHHHHHHHHHcCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554433445555667788888888888888888888888888888888877754
No 143
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=47.34 E-value=23 Score=23.87 Aligned_cols=20 Identities=20% Similarity=0.100 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033318 103 MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~k 122 (122)
.|++.+.++++++.+++.+|
T Consensus 62 ~~f~~~~~~~v~~~~~~~y~ 81 (105)
T PF10183_consen 62 PFFFGFSGSLVFGGVFLAYK 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 66666666666666666554
No 144
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=47.23 E-value=17 Score=26.30 Aligned_cols=19 Identities=5% Similarity=0.273 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
+|.++-|+|+++++.+|++
T Consensus 26 ~~~~inflil~~lL~~fl~ 44 (167)
T PRK08475 26 IERTINFLIFVGILWYFAA 44 (167)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666665
No 145
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.10 E-value=18 Score=28.25 Aligned_cols=18 Identities=22% Similarity=0.820 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l 120 (122)
++|++++-+++|+++|++
T Consensus 223 ~~Y~l~LH~lvf~~l~~~ 240 (248)
T PF08172_consen 223 FFYCLGLHLLVFFVLYYM 240 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666677778888888874
No 146
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=46.26 E-value=66 Score=23.24 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=14.8
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhh
Q 033318 49 VNLLKRLSGDI-NEEVDTHNRMLERMGN 75 (122)
Q Consensus 49 v~~Lk~~a~~I-~~El~~Qn~lLD~l~~ 75 (122)
..-|++.+..+ ....+.|.+.|+-...
T Consensus 107 ~e~L~~lg~~LG~~D~~~Q~k~i~l~~~ 134 (170)
T PF09548_consen 107 KEILLELGKSLGYSDREMQEKHIELYLE 134 (170)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 34455566666 3456666665554433
No 147
>PRK04098 sec-independent translocase; Provisional
Probab=46.01 E-value=1.2e+02 Score=22.29 Aligned_cols=52 Identities=12% Similarity=0.233 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK 92 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~ 92 (122)
+.+-.++..++.+|..+.+..+++++.-. ++++...+......|..+...++
T Consensus 27 ~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~ 78 (158)
T PRK04098 27 QAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLK 78 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777777777777777666654 45555555555444444444443
No 148
>PF07097 DUF1359: Protein of unknown function (DUF1359); InterPro: IPR010772 This family consists of several hypothetical bacterial and phage proteins of around 100 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this species. The function of this family is unknown.
Probab=46.01 E-value=75 Score=21.26 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 033318 39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDM 77 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~ 77 (122)
.+++..+..++.+||++-.++.+.-+--.-++|++.++=
T Consensus 8 ~~~I~~~q~K~~RLk~~IH~vr~Q~~~~~i~~D~~k~~~ 46 (102)
T PF07097_consen 8 SEQIAKIQTKICRLKNVIHAVRRQTELVKIVLDDLKNNH 46 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCC
Confidence 567888999999999998887765555566777776543
No 149
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=45.78 E-value=79 Score=20.21 Aligned_cols=24 Identities=8% Similarity=0.357 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 61 EEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 61 ~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
+|.++=++=||+++..++-+...+
T Consensus 15 ~dfne~~kRLdeieekvef~~~Ev 38 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFVNGEV 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 344445556677766666555433
No 150
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.70 E-value=1.6e+02 Score=23.61 Aligned_cols=32 Identities=6% Similarity=0.115 Sum_probs=21.0
Q ss_pred HHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 64 DTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 64 ~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.....-+.+|..+.+-+.........+++..-
T Consensus 274 ~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 274 NEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344466777777777777777777777544
No 151
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.30 E-value=1.1e+02 Score=25.17 Aligned_cols=52 Identities=19% Similarity=0.276 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhh--hhhhHHHHHHHHH
Q 033318 44 GLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRG--VLSGTMDKFKMVF 95 (122)
Q Consensus 44 ~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~--~L~~~~krl~kv~ 95 (122)
..+++|..+.+.=..|.+|++....-+++=+..|+.+.- +++.+..+|+.=+
T Consensus 291 ~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI 344 (359)
T PF10498_consen 291 QASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEI 344 (359)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 344444444444445566666666566666666655555 5556666655433
No 152
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=44.81 E-value=1.3e+02 Score=22.51 Aligned_cols=59 Identities=12% Similarity=0.190 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
-....+......+.....++..-..|+.++..||+.-...++.....|..+...+.+.-
T Consensus 113 ~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk 171 (188)
T PF05335_consen 113 TLKAALKAAQANLANAEQVAEGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTK 171 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777788888888889999999999999999999999988888888777653
No 153
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=44.77 E-value=81 Score=20.08 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhh
Q 033318 57 GDINEEVDTHNRMLERMGNDMDASRG 82 (122)
Q Consensus 57 ~~I~~El~~Qn~lLD~l~~~~d~t~~ 82 (122)
.++.+=+++.|.++++++...++++.
T Consensus 47 ~e~~~ll~~~n~l~~dv~~k~~~v~~ 72 (90)
T PF06103_consen 47 KEINDLLHNTNELLEDVNEKLEKVDP 72 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33344445556666666665555443
No 154
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=44.01 E-value=20 Score=26.17 Aligned_cols=17 Identities=24% Similarity=0.424 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhC
Q 033318 106 LVASFVVIFLIVYYLTR 122 (122)
Q Consensus 106 iv~l~v~lf~il~~l~k 122 (122)
++-|+++++++.||++|
T Consensus 31 ~Inflill~lL~~fl~k 47 (184)
T CHL00019 31 LINLSVVLGVLIYFGKG 47 (184)
T ss_pred HHHHHHHHHHHHHHhHh
Confidence 56666777777777664
No 155
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=43.90 E-value=22 Score=25.55 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHhC
Q 033318 110 FVVIFLIVYYLTR 122 (122)
Q Consensus 110 ~v~lf~il~~l~k 122 (122)
++++++++|.++|
T Consensus 129 ll~i~~giy~~~r 141 (145)
T PF10661_consen 129 LLAICGGIYVVLR 141 (145)
T ss_pred HHHHHHHHHHHHH
Confidence 3455667777654
No 156
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=43.89 E-value=1.3e+02 Score=22.11 Aligned_cols=52 Identities=10% Similarity=0.099 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
..+..+.-+.|...++.|+.-+..+..-+..++.-|+.|...++.....++.
T Consensus 130 i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~~ 181 (184)
T PF05791_consen 130 INELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIKK 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-G
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHHh
Confidence 3445555555666777777777777777777777777777777777666654
No 157
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=43.85 E-value=1.4e+02 Score=22.89 Aligned_cols=18 Identities=28% Similarity=0.272 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKR 54 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~ 54 (122)
+.+..+..+.....+|..
T Consensus 136 D~~arl~~l~~~~~rl~~ 153 (262)
T PF14257_consen 136 DLEARLKNLEAEEERLLE 153 (262)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 158
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=43.83 E-value=1.1e+02 Score=21.46 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHN--RMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn--~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
-.=|.+.-......-.+.+.+..-..+++..|. ..|++++..++..=.++.++.++=++
T Consensus 43 R~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~~lD~~V~~aY~Kr~~~~~kkkk 103 (131)
T PF10198_consen 43 RRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILDDLDKQVEQAYKKRMRARKKKKK 103 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 344555556666777788888889999999997 78999999988887777666665444
No 159
>PHA02955 hypothetical protein; Provisional
Probab=43.57 E-value=26 Score=26.89 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=5.8
Q ss_pred HHHHHHHHHHhC
Q 033318 111 VVIFLIVYYLTR 122 (122)
Q Consensus 111 v~lf~il~~l~k 122 (122)
+++|+++|++.|
T Consensus 190 i~~~v~l~yikR 201 (213)
T PHA02955 190 LLILIILGYIYR 201 (213)
T ss_pred HHHHHHHHHHHH
Confidence 344444566543
No 160
>PHA03164 hypothetical protein; Provisional
Probab=43.54 E-value=24 Score=22.98 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 033318 107 VASFVVIFLIVYY 119 (122)
Q Consensus 107 v~l~v~lf~il~~ 119 (122)
+..+++++|++|+
T Consensus 68 IamILfiifvlyv 80 (88)
T PHA03164 68 IAMILFIIFVLYV 80 (88)
T ss_pred HHHHHHHHHHHHh
Confidence 3333444444544
No 161
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=43.51 E-value=25 Score=23.76 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGT 87 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~ 87 (122)
.|-|..|+.|...+..|..--.....++..-+.-|..+...-+.....|..+
T Consensus 21 ~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~a 72 (131)
T PF05103_consen 21 DEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQA 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhh
Confidence 4567777777777777776655666666555555555554444444444333
No 162
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=43.45 E-value=24 Score=25.49 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=18.1
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 67 NRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 67 n~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
++.+|.++.+.++....+.......++.+.
T Consensus 72 ~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~ 101 (161)
T PF04420_consen 72 NRKLDKLEEELEKLNKSLSSEKSSFDKSLS 101 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555555544
No 163
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=43.42 E-value=1.3e+02 Score=25.85 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
++.-..|+....++|..++..||+-...+....++....|++++.........+
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344456777788888888888876555555666666666777777777766666
No 164
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=43.03 E-value=23 Score=26.63 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhC
Q 033318 105 TLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 105 ~iv~l~v~lf~il~~l~k 122 (122)
.++.|++++|++.||++|
T Consensus 54 qlInFlIlv~lL~k~l~k 71 (205)
T PRK06231 54 HLIAFSILLLLGIFLFWK 71 (205)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334566666666666653
No 165
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=42.97 E-value=1.5e+02 Score=22.62 Aligned_cols=41 Identities=10% Similarity=0.267 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhh
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRG 82 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~ 82 (122)
+..+...+..|+..-..+...++.|+.-+++++...+....
T Consensus 58 ~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 58 YRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555666666666666555554443
No 166
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=42.75 E-value=23 Score=26.65 Aligned_cols=18 Identities=11% Similarity=0.264 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHh
Q 033318 104 FTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 104 ~~iv~l~v~lf~il~~l~ 121 (122)
+.-++..++.|++|||++
T Consensus 53 ~~~l~w~~I~FliL~~lL 70 (204)
T PRK09174 53 ASQLLWLAITFGLFYLFM 70 (204)
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 445566666777777765
No 167
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=42.45 E-value=1.5e+02 Score=22.50 Aligned_cols=60 Identities=13% Similarity=0.258 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
.+.+..+...+.....-....-.|+..-+.-|..++..++.+..+|..+..++..+-+..
T Consensus 14 ~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~ 73 (237)
T PF00261_consen 14 EERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRA 73 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666677888899999999999999999999999999999998887643
No 168
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.45 E-value=90 Score=19.96 Aligned_cols=37 Identities=8% Similarity=0.252 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 60 NEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 60 ~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
-.-+..|.+.|++|+..+...+..+.+...+|+.+.+
T Consensus 14 E~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~ 50 (72)
T COG2900 14 EIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTE 50 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677778888887776666666666666655554
No 169
>PRK01919 tatB sec-independent translocase; Provisional
Probab=42.37 E-value=1.4e+02 Score=22.15 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNR 68 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~ 68 (122)
+..-.++..+..+|.++.++.+|++++-.
T Consensus 27 ~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e 55 (169)
T PRK01919 27 RVARTAGALFGRAQRYINDVKAEVSREIE 55 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556778888888888888888887753
No 170
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=42.21 E-value=39 Score=18.89 Aligned_cols=13 Identities=46% Similarity=0.496 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 033318 108 ASFVVIFLIVYYL 120 (122)
Q Consensus 108 ~l~v~lf~il~~l 120 (122)
.++|++.++-|.+
T Consensus 23 mi~vFi~li~ytl 35 (38)
T PF09125_consen 23 MILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 171
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=41.96 E-value=25 Score=24.99 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
+|.++.|++++|++-+|++
T Consensus 26 ~~~~inFliL~~lL~k~l~ 44 (156)
T CHL00118 26 PLMALQFLLLMVLLNIILY 44 (156)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555556666666555554
No 172
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=41.79 E-value=68 Score=21.68 Aligned_cols=28 Identities=21% Similarity=0.592 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 033318 51 LLKRLSGDINEEVDTHNRMLERMGNDMD 78 (122)
Q Consensus 51 ~Lk~~a~~I~~El~~Qn~lLD~l~~~~d 78 (122)
+|+.+=..+.+|+..|.+-||+++..++
T Consensus 73 qL~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 73 QLKKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444445677888889999999987654
No 173
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=41.78 E-value=8.6 Score=26.85 Aligned_cols=16 Identities=13% Similarity=0.312 Sum_probs=0.0
Q ss_pred HHhhhhhHHhhhhhhh
Q 033318 70 LERMGNDMDASRGVLS 85 (122)
Q Consensus 70 LD~l~~~~d~t~~~L~ 85 (122)
++.++..++++...+.
T Consensus 114 ~~~~~~~l~~l~~~l~ 129 (183)
T PF01105_consen 114 LDPLEESLEKLESNLK 129 (183)
T ss_dssp ----------------
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3334444444333333
No 174
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=41.46 E-value=1.9e+02 Score=23.27 Aligned_cols=56 Identities=18% Similarity=0.285 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 38 NERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
.++.+..+.+++..|-.++.+|-+-|+.. +..-.+.++..+.++..+..|++++-.
T Consensus 16 ~eEti~qi~~aL~~L~~v~~diF~rI~~R---v~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 16 REETILQIADALEYLDKVSNDIFSRISAR---VERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35666777777888888888777776654 334556667777788888888887743
No 175
>PRK00708 sec-independent translocase; Provisional
Probab=41.41 E-value=1.6e+02 Score=22.55 Aligned_cols=40 Identities=13% Similarity=0.330 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhHHh
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRM--LERMGNDMDA 79 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~l--LD~l~~~~d~ 79 (122)
+.+-.++..|..+|.++.+..+++++.... ||++...+..
T Consensus 27 ~~~R~lGk~v~k~R~~a~e~r~~~~e~~~~~eldd~~k~~~~ 68 (209)
T PRK00708 27 PMLRAFGKMTARMRKMAGEFRRQFDEALREAELDDVRQTISD 68 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345568888888888888888888776542 5666554443
No 176
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=41.21 E-value=31 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.637 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
++-|+++++++++++||+.
T Consensus 35 LiaIvVliiiiivli~lcs 53 (189)
T PF05568_consen 35 LIAIVVLIIIIIVLIYLCS 53 (189)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777764
No 177
>PRK09039 hypothetical protein; Validated
Probab=41.17 E-value=1.9e+02 Score=23.40 Aligned_cols=60 Identities=10% Similarity=0.106 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHH
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDK 90 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~kr 90 (122)
+.....+...++..|..-+..||..=..+..+|+..+....+....++.....|+.+..+
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777888889999999999999999999999999999999999999999888743
No 178
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=41.11 E-value=1.4e+02 Score=21.69 Aligned_cols=67 Identities=13% Similarity=0.224 Sum_probs=39.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDT----HNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~----Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
.++.++.|-...++.+...+..+..-...+..++.+ +..-.+.+.+.+..+...+..+..+|..+-.
T Consensus 96 ~e~~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~ 166 (204)
T PF04740_consen 96 DEDFLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQ 166 (204)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666655555444332 2223566666666666666666666666654
No 179
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=41.02 E-value=1.6e+02 Score=22.51 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=14.4
Q ss_pred cCCcchhHHHHHHHHHHHHHHHH
Q 033318 98 KSSRRMFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 98 ~~~~~~~~iv~l~v~lf~il~~l 120 (122)
.++++.|.++++=|++|+++.++
T Consensus 150 ~STwgT~~lmgvNvllFl~~~~~ 172 (207)
T PF05546_consen 150 ASTWGTWGLMGVNVLLFLVAQLL 172 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666777766655
No 180
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=40.90 E-value=2.2e+02 Score=23.98 Aligned_cols=54 Identities=9% Similarity=0.166 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
..+.+......+...+..+...+++|...++++...++.....+.........+
T Consensus 271 ~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~ 324 (553)
T PRK15048 271 GSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQA 324 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555556666667777777777766666666655554444443
No 181
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=40.53 E-value=59 Score=26.22 Aligned_cols=73 Identities=19% Similarity=0.222 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 033318 46 QDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVY 118 (122)
Q Consensus 46 ~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~ 118 (122)
...+..|-.+...++--+.+=..++.-=+.+.+....+|......+.++-++=...-+...||+++.=|+-+|
T Consensus 167 ek~lgKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflsly 239 (323)
T KOG2825|consen 167 EKGLGKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLY 239 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHH
Confidence 3344444444444444444334455433445556666777777777777665443333333444444444444
No 182
>COG3905 Predicted transcriptional regulator [Transcription]
Probab=40.17 E-value=1.1e+02 Score=20.15 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHH-HHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKR--LSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDK-FKMVF 95 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~--~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~kr-l~kv~ 95 (122)
..+....||.|+....+=++ +...|-++++-|.-.++.+...+.....+.--+-.. +..+.
T Consensus 10 ~del~~rLd~lAe~~~rsrs~i~~~Aia~~v~re~~q~a~i~aGla~a~aGr~v~heEv~a~i~ 73 (83)
T COG3905 10 DDELKRRLDELAEATDRSRSYIAEQAIADFVDREEWQLAAIKAGLADAEAGRFVTHEEVIAWID 73 (83)
T ss_pred CHHHHHHHHHHHHHhccChhhhHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCcCCHHHHHHHHH
Confidence 35678889999999988887 788999999999999999999999888876666665 44444
No 183
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=40.05 E-value=27 Score=28.41 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l 120 (122)
+++.|++++|+++|+|-+
T Consensus 158 ~lf~ii~l~vla~ivY~~ 175 (318)
T PF06682_consen 158 WLFWIIFLLVLAFIVYSL 175 (318)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 555556666666666644
No 184
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=39.60 E-value=1.6e+02 Score=21.99 Aligned_cols=60 Identities=15% Similarity=0.315 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.+.|..+..|..++..|+..+..+..+-+.=..-+..+....+.....+.++--++..+.
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888877777766666666777777777777777777766666554
No 185
>PRK02793 phi X174 lysis protein; Provisional
Probab=39.23 E-value=98 Score=19.42 Aligned_cols=36 Identities=8% Similarity=0.221 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 59 INEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 59 I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
+-.-+..|...+++|+..+..-+..+..-.++++.+
T Consensus 13 LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 13 LESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455556666666666655554444433333333
No 186
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=39.16 E-value=92 Score=21.22 Aligned_cols=11 Identities=9% Similarity=0.175 Sum_probs=7.5
Q ss_pred hHHHHHHHHHH
Q 033318 86 GTMDKFKMVFE 96 (122)
Q Consensus 86 ~~~krl~kv~~ 96 (122)
.+|+||-.+++
T Consensus 16 ~AMrRLl~~LR 26 (103)
T PF11027_consen 16 MAMRRLLNLLR 26 (103)
T ss_pred HHHHHHHHHHH
Confidence 36777777776
No 187
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=39.08 E-value=1e+02 Score=19.55 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.0
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHH
Q 033318 67 NRMLERMGNDMDASRGVLSGTMDK 90 (122)
Q Consensus 67 n~lLD~l~~~~d~t~~~L~~~~kr 90 (122)
.+.|++|+......+=++.+.++.
T Consensus 8 ~r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 8 QRRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHHhcCcHHHHHhcc
Confidence 348999999999888888887776
No 188
>PF14316 DUF4381: Domain of unknown function (DUF4381)
Probab=39.08 E-value=27 Score=24.55 Aligned_cols=18 Identities=17% Similarity=0.521 Sum_probs=7.6
Q ss_pred hhHHH-HHHHHHHHHHHHH
Q 033318 103 MFTLV-ASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv-~l~v~lf~il~~l 120 (122)
|+.++ ++++++++++|+.
T Consensus 23 Wwll~~lll~~~~~~~~~~ 41 (146)
T PF14316_consen 23 WWLLLALLLLLLILLLWRL 41 (146)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 34443 3334444444443
No 189
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.03 E-value=1.5e+02 Score=27.45 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
+..++|-++..+.++...|+.--.....|+.+++.....|.+.++-....+.....+...+.+
T Consensus 665 lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~~~~~~~~~q 727 (970)
T KOG0946|consen 665 LIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGIISSKQRDLLQ 727 (970)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHh
Confidence 356778888888888888888888888888888888888888888888888766655555554
No 190
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.88 E-value=90 Score=18.90 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDT 65 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~ 65 (122)
|.+..+..+..++.++|.--.+|.++++.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~ 32 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEK 32 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555555544
No 191
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=38.26 E-value=25 Score=23.77 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 59 INEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 59 I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
|.+|+++=.+.-|++.++.|-...-++.
T Consensus 35 i~eqi~kLe~~addl~nsLdP~~~~l~S 62 (97)
T PF05440_consen 35 INEQIDKLEKAADDLVNSLDPRTPPLNS 62 (97)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcccc
Confidence 4444444455556666666665555543
No 192
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=38.22 E-value=1e+02 Score=19.78 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=16.0
Q ss_pred HHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 68 RMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 68 ~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
..|+.++..++.....|+.+...|.++-++
T Consensus 8 ~~Lr~IN~~ie~~~~~L~~a~~~~~~v~~~ 37 (78)
T PF08651_consen 8 EQLRKINPVIEGLIETLRSAKSNMNRVQET 37 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555443
No 193
>PHA03072 putative viral membrane protein; Provisional
Probab=38.21 E-value=55 Score=24.60 Aligned_cols=36 Identities=11% Similarity=0.269 Sum_probs=20.7
Q ss_pred hhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 033318 84 LSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 84 L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~ 119 (122)
|.-+..+-.+.++-++....|+.++++++..+++|+
T Consensus 13 L~Y~Re~~~k~i~~a~~sTl~ff~l~L~iS~llf~~ 48 (190)
T PHA03072 13 LEYAREKATKSIRAAKTSTLIFFVIILAISVLLLWF 48 (190)
T ss_pred hHhHHhhHhhhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 445566666666655554566666555555555554
No 194
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=37.88 E-value=2.1e+02 Score=22.76 Aligned_cols=55 Identities=11% Similarity=0.119 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 44 GLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 44 ~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
++.-.|++|++...++.-.+.+|...--+|....+.+...=..-..++..+-++.
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~ 67 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQ 67 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556788899999999999999999888898888887766666667777776643
No 195
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=37.58 E-value=2.1e+02 Score=25.01 Aligned_cols=46 Identities=9% Similarity=0.232 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 50 NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 50 ~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
..++++...|...+++=.+-|+.++++++++..-+-.....+.-++
T Consensus 424 ~~~~~L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD~l~ 469 (561)
T PF00429_consen 424 QQYRQLSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALDLLT 469 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhh
Confidence 3344444444444444444445555555555444444444444444
No 196
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=37.54 E-value=1.6e+02 Score=21.40 Aligned_cols=57 Identities=12% Similarity=0.173 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
++-..+..+...+..+...+..+..-...-....+.+...+......+....+.+..
T Consensus 29 ~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 85 (262)
T smart00283 29 ELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEE 85 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433333344444443333333333333333
No 197
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=37.43 E-value=1.1e+02 Score=25.80 Aligned_cols=8 Identities=13% Similarity=0.617 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 033318 113 IFLIVYYL 120 (122)
Q Consensus 113 lf~il~~l 120 (122)
+++++||+
T Consensus 138 ~~~~~~~~ 145 (569)
T PRK10600 138 LVFTIIWL 145 (569)
T ss_pred HHHHHHHH
Confidence 33334444
No 198
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=37.19 E-value=62 Score=19.72 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTH 66 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q 66 (122)
.+++.++.|...+.+++.....+..-++-|
T Consensus 26 ~~~~~i~RLE~H~ETlRk~mv~L~kKiDvQ 55 (57)
T PF02346_consen 26 ENSEAIKRLEHHIETLRKYMVILAKKIDVQ 55 (57)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 444555555555555555555555444433
No 199
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=36.74 E-value=50 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.365 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHHHHHhC
Q 033318 87 TMDKFKMVFETKSSRR--MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 87 ~~krl~kv~~~~~~~~--~~~iv~l~v~lf~il~~l~k 122 (122)
+....+.+-+.+.++. -.++++.++++.+++|++.|
T Consensus 62 a~~ty~Ei~~Gk~~W~~fg~~v~VGviLLv~vIwLltk 99 (104)
T TIGR03745 62 ALGTYHEIRTGKATWGDFGATVVVGAILLVVIIWLLTK 99 (104)
T ss_pred HHHHHHHHHcchhhHHhCcchhhhHhHHHHHHHHHHHH
Confidence 3444444444444432 23445666667777777654
No 200
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=36.71 E-value=32 Score=28.39 Aligned_cols=15 Identities=33% Similarity=0.704 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhC
Q 033318 108 ASFVVIFLIVYYLTR 122 (122)
Q Consensus 108 ~l~v~lf~il~~l~k 122 (122)
+++|++.+++|++.|
T Consensus 320 vvIVLIMvIIYLILR 334 (353)
T TIGR01477 320 LIIVLIMVIIYLILR 334 (353)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445566777654
No 201
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=36.56 E-value=1.1e+02 Score=19.57 Aligned_cols=37 Identities=5% Similarity=0.204 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCC
Q 033318 64 DTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSS 100 (122)
Q Consensus 64 ~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~ 100 (122)
+.|..+|.++-.++++....+..-.+.+..+-..+..
T Consensus 7 e~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn~~N~~ 43 (72)
T PF08650_consen 7 EQQSNLLSRIIGNVEKLNESVAELNQELEEINRANKN 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5688899999999999888888888888887765543
No 202
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=36.42 E-value=51 Score=25.60 Aligned_cols=44 Identities=11% Similarity=0.171 Sum_probs=23.6
Q ss_pred hhhhhHHhhhhhhhhHHHHHHHHHHhcCC-----c---chhHHHHHHHHHHH
Q 033318 72 RMGNDMDASRGVLSGTMDKFKMVFETKSS-----R---RMFTLVASFVVIFL 115 (122)
Q Consensus 72 ~l~~~~d~t~~~L~~~~krl~kv~~~~~~-----~---~~~~iv~l~v~lf~ 115 (122)
.-.+.|+..........+.+-..++..+. | +++.|++|+++.+|
T Consensus 186 k~~~~m~~~~~~tdq~~~dlvaYL~~~~ep~~~~rk~~g~~v~~fl~~~~~l 237 (250)
T COG2857 186 KPGTYMPGNPALTDQEVKDLVAYLKWAAEPEKEERKRLGFKVMIFLVVFTIL 237 (250)
T ss_pred CCcCCCCCChhhHHHHHHHHHHHHHHccCccHHHhhcCCeeehhHHHHHHHH
Confidence 34444555555566666666666653322 1 36666666643333
No 203
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=36.31 E-value=1.9e+02 Score=21.83 Aligned_cols=62 Identities=13% Similarity=0.238 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNR--MLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~--lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
.+..|..+-.|..+++.|+.-+..+..||..=.. .+.+|.....+...-+..-.+|+.++-.
T Consensus 81 l~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 81 LQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888999999999999999999997655 4578888888888888888888877754
No 204
>PRK01371 sec-independent translocase; Provisional
Probab=36.00 E-value=1.3e+02 Score=21.46 Aligned_cols=27 Identities=7% Similarity=0.277 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTH 66 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Q 66 (122)
+..-.++..+..+|..+.+..+++++.
T Consensus 27 ~~ar~lg~~ir~~R~~~~~ak~~i~~E 53 (137)
T PRK01371 27 KAARDAGRTLRQLREMANNARNDLRSE 53 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888888777776666554
No 205
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=35.83 E-value=17 Score=31.96 Aligned_cols=76 Identities=9% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH-----hcCCcc
Q 033318 34 DEHDNERALEGLQDRVNLLK------RLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE-----TKSSRR 102 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v~~Lk------~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~-----~~~~~~ 102 (122)
..+|-++-+..+...+-.|. .--.++..|+ +..+.+-..|+.+.=.++++-+ +=..+-
T Consensus 482 fnkel~e~~~n~n~t~P~l~~l~~fN~T~LNLt~EI-----------~~Lq~~I~~LN~tlVdLe~Ln~~e~YiKWPWyV 550 (610)
T PF01601_consen 482 FNKELDEIFKNLNSTLPNLDDLDIFNQTYLNLTSEI-----------DELQEVIDNLNNTLVDLEWLNRYETYIKWPWYV 550 (610)
T ss_dssp -----------S------HHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHCCHHHCCHHTTCCCHH------
T ss_pred hHHHHHHHHHhcCCCCCCCCchhhcccceeccHHHH-----------HHHHHHHHHhhhhheeHHHhcceeEEeehHHHH
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l 120 (122)
|+.|++.++++.+++.|+
T Consensus 551 WL~i~~~li~~~~~l~~~ 568 (610)
T PF01601_consen 551 WLAIILALIAFALILLWC 568 (610)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
No 206
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=35.60 E-value=51 Score=20.28 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=8.3
Q ss_pred chhHHHHHHHHHHHH
Q 033318 102 RMFTLVASFVVIFLI 116 (122)
Q Consensus 102 ~~~~iv~l~v~lf~i 116 (122)
.+..+|+++-+++|+
T Consensus 8 ~mtriVLLISfiIlf 22 (59)
T PF11119_consen 8 RMTRIVLLISFIILF 22 (59)
T ss_pred hHHHHHHHHHHHHHH
Confidence 466666666555443
No 207
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=35.53 E-value=1.6e+02 Score=20.90 Aligned_cols=57 Identities=9% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
+-...++.+...+............+++.....++++...|......+......+..
T Consensus 97 ~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~ 153 (213)
T PF00015_consen 97 EISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEE 153 (213)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHH
Confidence 444445555555444444444444444444444444444444444444333333333
No 208
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=35.37 E-value=1.2e+02 Score=19.29 Aligned_cols=59 Identities=14% Similarity=0.086 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSG--D---INEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~--~---I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
.+.|+..++.|..-...|+.... + +=+... ...-|..+-..|..++.++.+..+|+.++
T Consensus 27 ~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 27 RQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34454444444444444443332 1 223334 55567888888888888888888887765
No 209
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=35.33 E-value=1.6e+02 Score=24.84 Aligned_cols=48 Identities=8% Similarity=0.293 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 50 NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 50 ~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+.++.-...+.++++.-++-++.++..++....++.+...+|+.++.+
T Consensus 402 G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~ 449 (462)
T PRK08032 402 GIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTS 449 (462)
T ss_pred ccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444456777888888888888888888888888888888887754
No 210
>PF14018 DUF4234: Domain of unknown function (DUF4234)
Probab=35.23 E-value=99 Score=18.98 Aligned_cols=11 Identities=0% Similarity=-0.028 Sum_probs=5.5
Q ss_pred HHHHHHHHHhc
Q 033318 88 MDKFKMVFETK 98 (122)
Q Consensus 88 ~krl~kv~~~~ 98 (122)
.+.++.+.++.
T Consensus 26 ~~~~~~~~~~~ 36 (75)
T PF14018_consen 26 WKELNQLTGRI 36 (75)
T ss_pred HHHHHHHhcCC
Confidence 44455554444
No 211
>PTZ00046 rifin; Provisional
Probab=35.19 E-value=35 Score=28.22 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHhC
Q 033318 108 ASFVVIFLIVYYLTR 122 (122)
Q Consensus 108 ~l~v~lf~il~~l~k 122 (122)
+++|++.+++|++.|
T Consensus 325 vVIVLIMvIIYLILR 339 (358)
T PTZ00046 325 VVIVLIMVIIYLILR 339 (358)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445566776654
No 212
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.97 E-value=2.3e+02 Score=22.49 Aligned_cols=27 Identities=7% Similarity=0.299 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 60 NEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 60 ~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
..|+++-+.-|..+...++.+...+..
T Consensus 72 ~~~i~~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 72 QKEIDQSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444433
No 213
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=34.85 E-value=89 Score=19.53 Aligned_cols=31 Identities=19% Similarity=0.445 Sum_probs=18.5
Q ss_pred HHHHHHHHhcCCc---chhHHHHHHHHHHHHHHH
Q 033318 89 DKFKMVFETKSSR---RMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 89 krl~kv~~~~~~~---~~~~iv~l~v~lf~il~~ 119 (122)
.=+.+++++++.. .|..++.++++++.++-+
T Consensus 17 avl~~vLk~sGkee~A~~~tLaG~iiVL~~Vi~~ 50 (64)
T TIGR02848 17 AVIHTILKQSGKEEQAQMVTLAGIVVVLFMVITL 50 (64)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778777654 266666666666555433
No 214
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=34.65 E-value=34 Score=25.18 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=4.1
Q ss_pred HHHHHHHHh
Q 033318 113 IFLIVYYLT 121 (122)
Q Consensus 113 lf~il~~l~ 121 (122)
.++++||++
T Consensus 106 ~l~i~yfvi 114 (163)
T PF06679_consen 106 ALAILYFVI 114 (163)
T ss_pred HHHHHHHHH
Confidence 344445544
No 215
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=34.49 E-value=66 Score=16.95 Aligned_cols=6 Identities=33% Similarity=0.739 Sum_probs=2.3
Q ss_pred HHHHHH
Q 033318 114 FLIVYY 119 (122)
Q Consensus 114 f~il~~ 119 (122)
+++.|+
T Consensus 14 lLl~YL 19 (29)
T PRK14750 14 LLLGYL 19 (29)
T ss_pred HHHHHH
Confidence 333333
No 216
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=34.29 E-value=1.2e+02 Score=19.02 Aligned_cols=26 Identities=19% Similarity=0.320 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDT 65 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~ 65 (122)
+.++.|...|..|+..|..+.-++.+
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHD 27 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHD 27 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999998888765
No 217
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=34.13 E-value=2.5e+02 Score=22.53 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
++..+......++..-...-.+......-+-++.+..+++...+..+..++.++-+++
T Consensus 79 el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktN 136 (314)
T PF04111_consen 79 ELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTN 136 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444444444333333344444444555666788888888888888888887743
No 218
>PF06916 DUF1279: Protein of unknown function (DUF1279); InterPro: IPR009688 This entry represents the C terminus (approx. 120 residues) of a number of eukaryotic proteins of unknown function.
Probab=34.08 E-value=49 Score=21.54 Aligned_cols=33 Identities=9% Similarity=0.108 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHh
Q 033318 89 DKFKMVFETKSSRRMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 89 krl~kv~~~~~~~~~~~iv~l~v~lf~il~~l~ 121 (122)
+|++.++++-|.....+=+.+.++-|..+|+++
T Consensus 1 qr~K~l~k~YG~~~l~vy~~~s~~~~~~~y~~v 33 (91)
T PF06916_consen 1 QRLKQLFKKYGYVALGVYLGLSFISLGSCYLAV 33 (91)
T ss_pred CcHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHH
Confidence 378888888886543333444445555555543
No 219
>PRK07737 fliD flagellar capping protein; Validated
Probab=34.02 E-value=3e+02 Score=23.52 Aligned_cols=64 Identities=5% Similarity=0.105 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 34 DEHDNERALEGLQDRV------NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v------~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+....++.++...+.+ ..++.-...|+++++..++-+++++..++....++.+....|+.++.+
T Consensus 415 ia~~l~~~l~~~~~~~~~~~g~g~~~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~ 484 (501)
T PRK07737 415 IARRLRDTLKETIKSIEQKAGNTTMTNQQFAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQK 484 (501)
T ss_pred HHHHHHHHHHHHHhhhhhhcCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544321 122223346888899999999999999999999998888888888764
No 220
>PRK00295 hypothetical protein; Provisional
Probab=34.01 E-value=1.2e+02 Score=18.82 Aligned_cols=24 Identities=4% Similarity=0.173 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 61 EEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 61 ~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
.-+..|...+++|+..+..-+..|
T Consensus 12 ~kla~qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 12 SRQAFQDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555444333
No 221
>PRK00846 hypothetical protein; Provisional
Probab=33.96 E-value=1.3e+02 Score=19.35 Aligned_cols=36 Identities=6% Similarity=0.170 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 60 NEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 60 ~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
-.-+..|..++++|+..+..-+..+..-..+++.+.
T Consensus 19 E~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 19 ETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666555555555444444433
No 222
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=33.89 E-value=2.1e+02 Score=21.69 Aligned_cols=61 Identities=16% Similarity=0.283 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
....|+.++.|...+...+..+.+...-.++-..-|.-+..+.+.+..++..+-.++..+-
T Consensus 87 ~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 87 EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 4466778888888888888888888777777777777777777777777777666666554
No 223
>PF03356 Pox_LP_H2: Viral late protein H2; InterPro: IPR005023 This entry represents the late protein H2 found in Vaccinia and other poxviruses. This protein is a highly conserved viral membrane protein found in all sequenced poxviruses, containing an N-terminal transmembrane domain and four conserved cysteines thought to be involved in the formation of intramolecular disulphide bonds []. H2 has been shown to be necessary for entry into the host cell and virus-induced cell-cell fusion, but is not required for virus morphogenesis or the attachment of virus particles to cells. It is part of an entry-fusion complex composed of eight viral membrane proteins [].
Probab=33.18 E-value=77 Score=23.82 Aligned_cols=36 Identities=11% Similarity=0.200 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 033318 84 LSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 84 L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~ 119 (122)
|.-+..+-.+..+-++....|+.++++++..+++|+
T Consensus 13 LeY~Re~~~~~i~~ak~sTl~ffvlil~iS~llf~f 48 (189)
T PF03356_consen 13 LEYAREKETKSIRYAKVSTLCFFVLILIISVLLFWF 48 (189)
T ss_pred hHhHHhhhhhhhhhhcchhHHHHHHHHHHHHHHHhh
Confidence 344555555666555544566666555555555554
No 224
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=33.07 E-value=1.1e+02 Score=18.15 Aligned_cols=32 Identities=9% Similarity=0.275 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033318 43 EGLQDRVNLLKRLSGDINEEVDTHNRMLERMG 74 (122)
Q Consensus 43 d~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~ 74 (122)
+.|...+..+...+..|.+.++.-...++.|.
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~ 38 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQ 38 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666667777777777777777666666664
No 225
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=32.80 E-value=1.3e+02 Score=18.82 Aligned_cols=59 Identities=12% Similarity=0.282 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDT---HNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~---Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
++-...++.|...|..|+..-..+-..... -..-||.+...+......+....+.|+..
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777777777777665555444431 22234444444444444444444444444
No 226
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=32.29 E-value=68 Score=18.75 Aligned_cols=9 Identities=33% Similarity=0.324 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 033318 103 MFTLVASFV 111 (122)
Q Consensus 103 ~~~iv~l~v 111 (122)
|++.+|-+|
T Consensus 4 wlt~iFsvv 12 (49)
T PF11044_consen 4 WLTTIFSVV 12 (49)
T ss_pred HHHHHHHHH
Confidence 333343333
No 227
>COG4640 Predicted membrane protein [Function unknown]
Probab=32.14 E-value=65 Score=27.30 Aligned_cols=19 Identities=11% Similarity=0.446 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
.|..+++++++++++|++.
T Consensus 54 ~was~a~~lIlii~~~~fg 72 (465)
T COG4640 54 PWASGAFILILIIILFFFG 72 (465)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 5555566666666666553
No 228
>PRK00736 hypothetical protein; Provisional
Probab=31.96 E-value=1.3e+02 Score=18.64 Aligned_cols=29 Identities=10% Similarity=0.267 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhhhhHHhhhhhhhhHHHH
Q 033318 62 EVDTHNRMLERMGNDMDASRGVLSGTMDK 90 (122)
Q Consensus 62 El~~Qn~lLD~l~~~~d~t~~~L~~~~kr 90 (122)
-+-.|...+++|+..+..-+..|..-.++
T Consensus 13 klafqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 13 RVAEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444333333333
No 229
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=31.87 E-value=73 Score=23.73 Aligned_cols=20 Identities=20% Similarity=0.193 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHHHh
Q 033318 102 RMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 102 ~~~~iv~l~v~lf~il~~l~ 121 (122)
+.+..++.++++++++||.+
T Consensus 37 q~ll~~~g~vL~l~i~Y~~i 56 (178)
T PRK09731 37 KGMLLAAVVFLFSVGYYVLI 56 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666667654
No 230
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=31.84 E-value=70 Score=18.56 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=13.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHh
Q 033318 99 SSRRMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 99 ~~~~~~~iv~l~v~lf~il~~l~ 121 (122)
++.++++++++++.++.-+|.++
T Consensus 29 ~t~p~~~~~g~llG~~~g~~~~~ 51 (55)
T PF09527_consen 29 GTSPWFTLIGLLLGIAAGFYNVY 51 (55)
T ss_pred CCChHHHHHHHHHHHHHHHHHHH
Confidence 33467777766665555555544
No 231
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=31.75 E-value=34 Score=25.22 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLE 71 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD 71 (122)
-.||.|.|+ =+.|-..+++||.=+.|+..|+.-|.++-+
T Consensus 17 alLE~ELdE-KE~L~~~~QRLkDE~RDLKqEl~V~ek~~~ 55 (166)
T PF04880_consen 17 ALLESELDE-KENLREEVQRLKDELRDLKQELIVQEKLRK 55 (166)
T ss_dssp HHHHHHHHH-HHHHHHCH----------------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 356777755 678999999999999999999977766543
No 232
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=31.66 E-value=23 Score=24.95 Aligned_cols=12 Identities=33% Similarity=0.927 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 033318 107 VASFVVIFLIVY 118 (122)
Q Consensus 107 v~l~v~lf~il~ 118 (122)
+++++++||++|
T Consensus 69 liillviffviy 80 (150)
T PF06084_consen 69 LIILLVIFFVIY 80 (150)
T ss_pred HHHHHHHhheeE
Confidence 334444555554
No 233
>PRK02119 hypothetical protein; Provisional
Probab=31.63 E-value=1.4e+02 Score=18.83 Aligned_cols=35 Identities=9% Similarity=0.220 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 59 INEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 59 I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
+-.-+..|...+++|+..+..-+..+..-.+.++.
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~ 48 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRY 48 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666444443333333
No 234
>PF07240 Turandot: Stress-inducible humoral factor Turandot; InterPro: IPR010825 This family consists of several Drosophila species specific Turandot proteins. The Turandot A (TotA) gene encodes a humoral factor, which is secreted from the fat body and accumulates in the body fluids. TotA is strongly induced upon bacterial challenge, as well as by other types of stress such as high temperature, mechanical pressure, dehydration, UV irradiation, and oxidative agents. It is also upregulated during metamorphosis and at high age. Flies that overexpress TotA show prolonged survival and retain normal activity at otherwise lethal temperatures. Although TotA is only induced by severe stress, it responds to a much wider range of stimuli than heat shock genes such as hsp70 or immune genes such as Cecropin A1 [].
Probab=31.61 E-value=16 Score=24.10 Aligned_cols=19 Identities=37% Similarity=0.823 Sum_probs=14.2
Q ss_pred cccccccccccCCcc-CCCcc
Q 033318 5 RDYRNSKVALFDGIE-EGGIR 24 (122)
Q Consensus 5 ~~~~~~r~~l~~g~~-~~g~~ 24 (122)
|+|+...+ +-||.| +||-.
T Consensus 41 ~~y~~~~~-lVDGvPaQGG~~ 60 (85)
T PF07240_consen 41 RRYKEENN-LVDGVPAQGGFW 60 (85)
T ss_pred HHHHHHhh-cccCcCCCCCch
Confidence 56777777 999988 67743
No 235
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=30.74 E-value=2e+02 Score=20.59 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKF 91 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl 91 (122)
+.++.+.++-++.+..-+..+..-+..+..|++.-...-....+..++...-|..+|...
T Consensus 32 e~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~ 91 (162)
T PF05565_consen 32 ESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAA 91 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 335667777888888888888888888888888877777777777777777777776654
No 236
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=30.61 E-value=1.5e+02 Score=18.98 Aligned_cols=38 Identities=16% Similarity=0.372 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMD 78 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d 78 (122)
+..-.++..++.+|..+.++.+|+++.-. ++++.....
T Consensus 26 ~~~r~~G~~i~~~r~~~~~~~~~~~~e~~-~~el~~~~~ 63 (80)
T TIGR01410 26 VAIRAVGKFVRRLRGMASDVKNELDEELK-AQELDEQLK 63 (80)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHhc-hHhHHHHHH
Confidence 34566888899999999999999877665 566655543
No 237
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=30.57 E-value=1.8e+02 Score=19.84 Aligned_cols=60 Identities=18% Similarity=0.296 Sum_probs=31.7
Q ss_pred CCccchhhH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 26 SSSYSHEID---EHDNERALEGLQDRVNLLKRLSGDIN---EEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 26 ~~~~~~~~l---~~eqD~~Ld~L~~~v~~Lk~~a~~I~---~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
..|.++.++ -.-+++.|..+..++..| ..+..|+ +.|+.|..-+..+...+......|..
T Consensus 20 ~~YVT~kef~efKd~~~q~L~kiE~~~~~l-~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~ 85 (102)
T PF01519_consen 20 TKYVTHKEFDEFKDSNNQRLTKIENKLDQL-AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQL 85 (102)
T ss_dssp TTB-BHHHHHHH---HTTB-BHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHhhccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455333 334677787788888755 3333333 56666766666666665544444433
No 238
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=30.51 E-value=84 Score=19.72 Aligned_cols=18 Identities=11% Similarity=0.342 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 033318 59 INEEVDTHNRMLERMGND 76 (122)
Q Consensus 59 I~~El~~Qn~lLD~l~~~ 76 (122)
+..|++....+-+.+-+.
T Consensus 9 L~R~~~~~~~~Y~~Ll~r 26 (82)
T PF13807_consen 9 LQRDVEIKRELYETLLQR 26 (82)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 239
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=29.84 E-value=1.5e+02 Score=20.63 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=11.3
Q ss_pred CCcccccccccccccCC
Q 033318 1 MNSRRDYRNSKVALFDG 17 (122)
Q Consensus 1 ~~~~~~~~~~r~~l~~g 17 (122)
|++||.||..+.....|
T Consensus 4 m~~~kLyR~~~~~~i~G 20 (118)
T PRK10697 4 NLNKKLYRIPQQGMVKG 20 (118)
T ss_pred CCCCceEECCCCCEEee
Confidence 56777777776655544
No 240
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.84 E-value=2.7e+02 Score=21.66 Aligned_cols=39 Identities=5% Similarity=0.106 Sum_probs=17.0
Q ss_pred hhhhhhhHHHHHHHHHHh----cCCcchhHHHHHHHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMVFET----KSSRRMFTLVASFVVIFLIVY 118 (122)
Q Consensus 80 t~~~L~~~~krl~kv~~~----~~~~~~~~iv~l~v~lf~il~ 118 (122)
..+.+..+-.|+....++ +....-|=..|.++++|.++.
T Consensus 185 l~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~ 227 (235)
T KOG3202|consen 185 LDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLL 227 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHH
Confidence 334444455555544433 221235554444444444433
No 241
>PF06387 Calcyon: D1 dopamine receptor-interacting protein (calcyon); InterPro: IPR009431 This family consists of several D1 dopamine receptor-interacting (calcyon) proteins. D1/D5 dopamine receptors in the basal ganglia, hippocampus, and cerebral cortex modulate motor, reward, and cognitive behaviour. D1-like dopamine receptors likely modulate neocortical and hippocampal neuronal excitability and synaptic function via Ca2+ as well as cAMP-dependent signalling []. Defective calcyon proteins have been implicated in both attention-deficit/hyperactivity disorder (ADHD) [] and schizophrenia.; GO: 0050780 dopamine receptor binding, 0007212 dopamine receptor signaling pathway, 0016021 integral to membrane
Probab=29.81 E-value=46 Score=24.97 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYY 119 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~ 119 (122)
.|.+.|+.+++|+++|=
T Consensus 89 ~~alAfl~Cv~~Lv~YK 105 (186)
T PF06387_consen 89 AFALAFLGCVVFLVMYK 105 (186)
T ss_pred HHHHHHHHHHHHHHhhe
Confidence 45556777777787773
No 242
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.66 E-value=3.6e+02 Score=23.10 Aligned_cols=56 Identities=5% Similarity=0.117 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.+.+..+=+...+.+...-..|..+-.+++++|+.+-.-++.+-..+...+.++..
T Consensus 130 r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 130 RQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777778888888888888888888888888877777777777777766654
No 243
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.56 E-value=1.1e+02 Score=23.52 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCcchhHHHHHHHHHHHHHHH
Q 033318 88 MDKFKMVFETKSSRRMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 88 ~krl~kv~~~~~~~~~~~iv~l~v~lf~il~~ 119 (122)
...++...+.++..-+|.+|+.+.++|.+=||
T Consensus 11 l~~ik~wwkeNGk~li~gviLg~~~lfGW~yw 42 (207)
T COG2976 11 LEAIKDWWKENGKALIVGVILGLGGLFGWRYW 42 (207)
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHHHHHHH
Confidence 35677788888865556666666666666555
No 244
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.44 E-value=1.7e+02 Score=23.64 Aligned_cols=47 Identities=15% Similarity=0.386 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 40 RALEGLQDRVN-----LLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 40 ~~Ld~L~~~v~-----~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
..||.+.+++. .|+......++.+..|++.|+++...++++...+..
T Consensus 55 ~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~ 106 (301)
T PF06120_consen 55 DSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKN 106 (301)
T ss_pred HhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555443 344455677888889999999999888888777764
No 245
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=29.10 E-value=53 Score=24.69 Aligned_cols=16 Identities=13% Similarity=0.436 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhC
Q 033318 107 VASFVVIFLIVYYLTR 122 (122)
Q Consensus 107 v~l~v~lf~il~~l~k 122 (122)
++++..|+||+|=++|
T Consensus 170 ~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 170 TLGVLAIIFFLYKFCK 185 (186)
T ss_pred HHHHHHHHHHHhhhcc
Confidence 3444444444444443
No 246
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=29.08 E-value=1.1e+02 Score=26.82 Aligned_cols=9 Identities=22% Similarity=0.194 Sum_probs=3.4
Q ss_pred hhhhHHHHH
Q 033318 83 VLSGTMDKF 91 (122)
Q Consensus 83 ~L~~~~krl 91 (122)
.|+....++
T Consensus 468 ~Lk~s~pKa 476 (538)
T PF05781_consen 468 YLKTSFPKA 476 (538)
T ss_pred HHHHHHHHH
Confidence 333333333
No 247
>PRK10404 hypothetical protein; Provisional
Probab=29.03 E-value=1.8e+02 Score=19.46 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=6.8
Q ss_pred HhhhhhHHhhhhhhhh
Q 033318 71 ERMGNDMDASRGVLSG 86 (122)
Q Consensus 71 D~l~~~~d~t~~~L~~ 86 (122)
+.++..++.+..++..
T Consensus 41 ~r~~~~L~~ar~~l~~ 56 (101)
T PRK10404 41 ARAEKALDDVKKRVSQ 56 (101)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 248
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=28.96 E-value=65 Score=20.30 Aligned_cols=14 Identities=14% Similarity=0.107 Sum_probs=7.5
Q ss_pred hhhhHHHHHHHHHH
Q 033318 83 VLSGTMDKFKMVFE 96 (122)
Q Consensus 83 ~L~~~~krl~kv~~ 96 (122)
-.+.+.+.++|+..
T Consensus 23 f~~~~~~E~~KV~W 36 (73)
T COG0690 23 FFKEVRKELKKVVW 36 (73)
T ss_pred HHHHHHHHHHhccC
Confidence 34455555666654
No 249
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.88 E-value=3.2e+02 Score=22.20 Aligned_cols=75 Identities=13% Similarity=0.127 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVY 118 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l~v~lf~il~ 118 (122)
.+-+|++-...|+.+-.+=|.=|+.=.--++.....++++...|.++-.-= -+...-+..|+++++++++++++.
T Consensus 226 sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQ---k~~~k~~~i~~L~l~ii~llvlli 300 (305)
T KOG0809|consen 226 SIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQ---KRNKKMKVILMLTLLIIALLVLLI 300 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHH---hcCCceEehHHHHHHHHHHHHHHH
Confidence 333344444444444444444455444455555555555555554443222 223444556666655555555543
No 250
>PHA03231 glycoprotein BALF4; Provisional
Probab=28.86 E-value=2.9e+02 Score=25.56 Aligned_cols=10 Identities=10% Similarity=-0.276 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 033318 32 EIDEHDNERA 41 (122)
Q Consensus 32 ~~l~~eqD~~ 41 (122)
+.+..|++-.
T Consensus 633 e~m~ReyN~y 642 (829)
T PHA03231 633 EEIFREYNLY 642 (829)
T ss_pred HHHHHHHHHH
Confidence 4444454433
No 251
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=28.83 E-value=2.1e+02 Score=20.19 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcC
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINE---EVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKS 99 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~---El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~ 99 (122)
..+..+|.+...+...+.....-.. .++.=++-+.-|+..++.+...|..++.++...-.+++
T Consensus 46 ~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 46 QLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344455555555555554433332 23333455666777777777777777777776655544
No 252
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=28.78 E-value=75 Score=18.65 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=7.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l 120 (122)
|..++.+++++.| +|.+
T Consensus 6 wiili~iv~~Cl~-lyl~ 22 (47)
T PRK10299 6 WVVLVVVVLACLL-LWAQ 22 (47)
T ss_pred ehHHHHHHHHHHH-HHHH
Confidence 3444444444333 5543
No 253
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=28.64 E-value=62 Score=19.86 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 033318 109 SFVVIFL 115 (122)
Q Consensus 109 l~v~lf~ 115 (122)
+++++|+
T Consensus 14 ~l~vl~~ 20 (58)
T PF13314_consen 14 ILIVLFG 20 (58)
T ss_pred HHHHHHH
Confidence 3333333
No 254
>COG4420 Predicted membrane protein [Function unknown]
Probab=28.61 E-value=2.4e+02 Score=21.31 Aligned_cols=23 Identities=22% Similarity=0.370 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 033318 53 KRLSGDINEEVDTHNRMLERMGN 75 (122)
Q Consensus 53 k~~a~~I~~El~~Qn~lLD~l~~ 75 (122)
..++.+.+.|...+....|++.+
T Consensus 27 ~~i~~~~~e~~~~~~t~gdR~ad 49 (191)
T COG4420 27 TPISSDRREEFEDGETFGDRVAD 49 (191)
T ss_pred chhhcchHHHHhcccchhhhHHH
Confidence 33455555555555555554443
No 255
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=28.57 E-value=1.5e+02 Score=18.27 Aligned_cols=30 Identities=3% Similarity=0.185 Sum_probs=12.1
Q ss_pred HHHHHHHHHhhhhhHHhhhhhhhhHHHHHH
Q 033318 63 VDTHNRMLERMGNDMDASRGVLSGTMDKFK 92 (122)
Q Consensus 63 l~~Qn~lLD~l~~~~d~t~~~L~~~~krl~ 92 (122)
+..|...++.|+..+..-+..+..-.+.++
T Consensus 13 la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~ 42 (69)
T PF04102_consen 13 LAFQEDTIEELNDVVTEQQRQIDRLQRQLR 42 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433333333333
No 256
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=28.47 E-value=1.7e+02 Score=18.82 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=9.6
Q ss_pred HHHhhhhhHHhhhhhhhhHH
Q 033318 69 MLERMGNDMDASRGVLSGTM 88 (122)
Q Consensus 69 lLD~l~~~~d~t~~~L~~~~ 88 (122)
+-+.+...++++..++....
T Consensus 32 ~r~~~~~~~~~a~~~~~~~~ 51 (94)
T PF05957_consen 32 ARDRAEEALDDARDRAEDAA 51 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555554433
No 257
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=28.45 E-value=47 Score=21.67 Aligned_cols=7 Identities=29% Similarity=0.496 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 033318 105 TLVASFV 111 (122)
Q Consensus 105 ~iv~l~v 111 (122)
+||++++
T Consensus 10 liIlviv 16 (81)
T PRK04598 10 LIIAVIV 16 (81)
T ss_pred HHHHHHH
Confidence 3333333
No 258
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=28.28 E-value=3.7e+02 Score=22.85 Aligned_cols=53 Identities=13% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTM 88 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~ 88 (122)
.+-.+.++.+...+.........|...+++|..-.+++...++........+.
T Consensus 436 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~~~ 488 (554)
T PRK15041 436 ESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA 488 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777788888888888888888888888888777766655444433
No 259
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.26 E-value=3.7e+02 Score=22.74 Aligned_cols=56 Identities=9% Similarity=0.174 Sum_probs=42.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.+.+..+=+...+.+...-..|..+-.++++|++.+-.-++.+-..+...+..+..
T Consensus 124 R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 179 (483)
T PRK07521 124 AQAAVDAAQDLANSLNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAVVS 179 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777788888888888888888888888877777777777666666644
No 260
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.22 E-value=2.9e+02 Score=21.47 Aligned_cols=43 Identities=7% Similarity=0.089 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 52 LKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 52 Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
|-+.=.++..||.+=...++++..+++++..+-+.-...+.+.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444433
No 261
>PRK10715 flk flagella biosynthesis regulator; Provisional
Probab=27.95 E-value=66 Score=26.34 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHhhhhhHHhh
Q 033318 50 NLLKRLSGDINE--EVDTHNRMLERMGNDMDAS 80 (122)
Q Consensus 50 ~~Lk~~a~~I~~--El~~Qn~lLD~l~~~~d~t 80 (122)
..|..+...+.. |-.+|..+.|-....|..+
T Consensus 228 ptL~~L~~lLkQp~~~~erQal~Dy~rq~Fg~t 260 (335)
T PRK10715 228 PTLESLQAALKQPLDAQEQQLLSDYAQQRFQAS 260 (335)
T ss_pred cHHHHHHHHhCCCCChhHHHHHHHHHHHHhCCC
Confidence 355556666665 3445566778777777654
No 262
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.93 E-value=3.7e+02 Score=24.06 Aligned_cols=57 Identities=5% Similarity=0.137 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
..+.+..+=+...+.+...-..|..+-.+++.||+.+-.-++.+-..+...+..|..
T Consensus 128 aRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~ 184 (676)
T PRK05683 128 ARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQ 184 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888888888888888888888888888888888877777777776654
No 263
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=27.91 E-value=72 Score=20.08 Aligned_cols=19 Identities=11% Similarity=0.453 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
+...++++.+++|+-|+.+
T Consensus 17 LIAvvLLLsIl~~lt~~ai 35 (66)
T PF13179_consen 17 LIAVVLLLSILAFLTYWAI 35 (66)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666654
No 264
>PTZ00234 variable surface protein Vir12; Provisional
Probab=27.85 E-value=36 Score=28.76 Aligned_cols=20 Identities=10% Similarity=0.272 Sum_probs=11.2
Q ss_pred CcchhHHHHHHHHHHHHHHH
Q 033318 100 SRRMFTLVASFVVIFLIVYY 119 (122)
Q Consensus 100 ~~~~~~iv~l~v~lf~il~~ 119 (122)
-|.+++-+.++-+|||++|+
T Consensus 364 ~rniim~~ailGtifFlfyy 383 (433)
T PTZ00234 364 FRHSIVGASIIGVLVFLFFF 383 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 34555555555556666665
No 265
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=27.76 E-value=3.1e+02 Score=21.68 Aligned_cols=42 Identities=17% Similarity=0.250 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMD 78 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d 78 (122)
+|.+.+-.|..-|..++..-.-|..||+.=....++|++-++
T Consensus 110 ~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~ 151 (254)
T KOG2196|consen 110 ENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLD 151 (254)
T ss_pred hCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888888888888888754444444443333
No 266
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=27.70 E-value=2.1e+02 Score=19.71 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 45 LQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 45 L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
|-..+...+..-. +-++++.+ ++.|+..+++....+-.=..++.+..
T Consensus 60 LL~q~~~~~~~~~-~l~~v~~~---v~~L~~s~~RL~~eV~~Py~~~~~~~ 106 (132)
T PF10392_consen 60 LLSQASSIEELES-VLQAVRSS---VESLQSSYERLRSEVIEPYEKIQKLT 106 (132)
T ss_pred HHHHHHhHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3344444444333 33444333 33444455555544444444444333
No 267
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.67 E-value=3.9e+02 Score=22.80 Aligned_cols=56 Identities=9% Similarity=0.201 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.+.+...=+...+.+...-..|..+-.++++|++.+-.-++.+-..+...+..+..
T Consensus 141 r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 196 (507)
T PRK07739 141 RSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQIAK 196 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777788888888888877777777666666666666544
No 268
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=27.60 E-value=1.9e+02 Score=19.33 Aligned_cols=19 Identities=0% Similarity=0.123 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHhcCC
Q 033318 82 GVLSGTMDKFKMVFETKSS 100 (122)
Q Consensus 82 ~~L~~~~krl~kv~~~~~~ 100 (122)
.......++++..++++-.
T Consensus 33 ~ef~~iI~~IN~~l~~a~~ 51 (118)
T PF10256_consen 33 EEFEEIINTINQILKEAFE 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3445566777777776633
No 269
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=27.51 E-value=20 Score=26.93 Aligned_cols=13 Identities=8% Similarity=0.595 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH
Q 033318 104 FTLVASFVVIFLI 116 (122)
Q Consensus 104 ~~iv~l~v~lf~i 116 (122)
|||++++|++.|+
T Consensus 38 Wyil~~~I~ly~l 50 (190)
T PF06936_consen 38 WYILFGCILLYLL 50 (190)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 6666555555444
No 270
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=27.47 E-value=59 Score=26.33 Aligned_cols=17 Identities=18% Similarity=0.073 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHHHHH
Q 033318 104 FTLVASFVVIFLIVYYL 120 (122)
Q Consensus 104 ~~iv~l~v~lf~il~~l 120 (122)
.++++++++.++++||.
T Consensus 117 ~~lv~~vvl~l~~~www 133 (331)
T PRK10856 117 TWLVLFVVIGLTGAWWW 133 (331)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444554
No 271
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.45 E-value=2.3e+02 Score=20.05 Aligned_cols=53 Identities=15% Similarity=0.275 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
.+.+...+..+..-......||..=+.-+..++..++.+...|..+..++...
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555555555555555555555555555555555555555555544443
No 272
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=27.23 E-value=3.8e+02 Score=22.56 Aligned_cols=58 Identities=10% Similarity=0.214 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
++-.+.+..+...+.........|..-+++|....+++...++........+......
T Consensus 434 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~ 491 (553)
T PRK15048 434 ESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQE 491 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777777777777777777776665555444433333
No 273
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=26.95 E-value=2.3e+02 Score=19.91 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 45 LQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 45 L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
|.+++..++++-..|..+++ ..+.+---++.+++.++..|+++++
T Consensus 2 lKdt~~kmkeL~e~~~~D~~-------K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAE-------KAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHH-------HHHccchHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555543 3455555667788888888887775
No 274
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=26.79 E-value=2.1e+02 Score=19.33 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=21.6
Q ss_pred HhhhhhhhhHHHHHHHHHHhcCCcchhHHHHH---HHHHHHHHHHHhC
Q 033318 78 DASRGVLSGTMDKFKMVFETKSSRRMFTLVAS---FVVIFLIVYYLTR 122 (122)
Q Consensus 78 d~t~~~L~~~~krl~kv~~~~~~~~~~~iv~l---~v~lf~il~~l~k 122 (122)
+.+-.-+++-++++..+..++.. |++++-. ++-+++++|.++|
T Consensus 48 ~kv~~W~~~k~k~~~~FV~RNk~--W~T~~S~~tS~isIL~LV~~~~K 93 (100)
T PF06363_consen 48 DKVKSWVKNKMKSMLSFVERNKA--WFTVVSAVTSFISILLLVTKIFK 93 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHcch--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666777777766554 4444311 2233444555543
No 275
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=26.69 E-value=73 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.224 Sum_probs=9.6
Q ss_pred HHhhhhhhhhHHHHHHHHH
Q 033318 77 MDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 77 ~d~t~~~L~~~~krl~kv~ 95 (122)
++......+...+.++++.
T Consensus 23 I~k~~~~~n~~kk~fkki~ 41 (104)
T PF12420_consen 23 IDKLKKDPNIDKKKFKKII 41 (104)
T ss_pred HHHHhhCCChhHHHHHHHH
Confidence 3444444555555666543
No 276
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=26.58 E-value=90 Score=19.43 Aligned_cols=16 Identities=13% Similarity=0.665 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 033318 104 FTLVASFVVIFLIVYY 119 (122)
Q Consensus 104 ~~iv~l~v~lf~il~~ 119 (122)
..++.+=++++|+.|+
T Consensus 39 t~MiGiWiVilFLtWf 54 (67)
T PF10854_consen 39 TIMIGIWIVILFLTWF 54 (67)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344333444444444
No 277
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=26.46 E-value=56 Score=23.58 Aligned_cols=14 Identities=21% Similarity=0.610 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHhC
Q 033318 109 SFVVIFLIVYYLTR 122 (122)
Q Consensus 109 l~v~lf~il~~l~k 122 (122)
.+.+++|++|.++|
T Consensus 90 tiGI~~f~lY~l~K 103 (152)
T PF15361_consen 90 TIGIVLFILYTLFK 103 (152)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666777765
No 278
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=26.45 E-value=2.5e+02 Score=20.27 Aligned_cols=36 Identities=6% Similarity=0.063 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhcCCcc--hhHHHHHHHHHHHHHHHHh
Q 033318 86 GTMDKFKMVFETKSSRR--MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 86 ~~~krl~kv~~~~~~~~--~~~iv~l~v~lf~il~~l~ 121 (122)
+..+++.++.++.+-+. .|...++=+-+|+.+|..+
T Consensus 52 ~~~~~~~~l~k~~~~~p~~~~~~~liq~Pif~~~~~~l 89 (198)
T PF02096_consen 52 KMQQEMQKLYKKHGVNPLKGCLPPLIQIPIFIGLFRAL 89 (198)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 36667778888777553 4555555556666666654
No 279
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=26.29 E-value=2.9e+02 Score=20.85 Aligned_cols=60 Identities=13% Similarity=0.279 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
+--..+-.|..+|.++-..--++-+++..|..---.+..++.....+|+..-.++.++++
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ 135 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILE 135 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666666666666666666655554455556666666666666666666664
No 280
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.98 E-value=4.5e+02 Score=23.18 Aligned_cols=56 Identities=13% Similarity=0.190 Sum_probs=41.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.+.+..+=+...+.+...-..|..+-.+++++|+.+-.-++.+-..+.+.+..+..
T Consensus 141 R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~ 196 (627)
T PRK06665 141 RQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVK 196 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777888888888888888888888777777777777666666654
No 281
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=25.83 E-value=3.4e+02 Score=21.54 Aligned_cols=56 Identities=11% Similarity=0.140 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.+.+.+.=+...+.+...-..|..+-.++++|++.+-.-++.+-..+...+..+..
T Consensus 129 r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~~ 184 (322)
T TIGR02492 129 RQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQQ 184 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777777777777777777788888887777777777777766666654
No 282
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=25.77 E-value=4.2e+02 Score=22.56 Aligned_cols=53 Identities=8% Similarity=0.162 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
.+.+......+...+.++....++|..-+.++...++.....+.........+
T Consensus 274 s~~v~~~s~els~~~~~ls~~~~~qa~~ieeiaas~eeis~s~~~~~~~~~~~ 326 (554)
T PRK15041 274 ANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQA 326 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555666666666666666666666555444444433
No 283
>PF11466 Doppel: Prion-like protein Doppel; InterPro: IPR021566 Dpl is a homologue related to the prion protein (PrP). Dpl is toxic to neurons and is expressed in the brains of mice that do not express PrP. In DHPC and SDS micelles, Dpl shoes about 40% alpha-helical structure however in aqueous solution it consists of a random coil. The alpha helical segment can adopt a transmembrane localisation also in a membrane. The unprocessed Dpl protein is thought to posses a possible channel formation mechanism which may be related to toxicity through direct interaction with cell membranes and damage to the cell membrane. ; PDB: 1Z65_A.
Probab=25.66 E-value=67 Score=17.06 Aligned_cols=12 Identities=25% Similarity=0.365 Sum_probs=6.8
Q ss_pred hhHHHHHHHHHH
Q 033318 103 MFTLVASFVVIF 114 (122)
Q Consensus 103 ~~~iv~l~v~lf 114 (122)
.|++.++++++|
T Consensus 7 ~~~lAi~c~LL~ 18 (30)
T PF11466_consen 7 GWWLAIVCVLLF 18 (30)
T ss_dssp SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 566666555544
No 284
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=25.65 E-value=4.5e+02 Score=23.39 Aligned_cols=58 Identities=5% Similarity=0.107 Sum_probs=44.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 033318 30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGT 87 (122)
Q Consensus 30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~ 87 (122)
..+.+..+=+...+.+...-..|..+-.+++.||+.+-.-++.+-..+...+..|..+
T Consensus 129 ~Rq~vl~~a~~La~~fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~~~ 186 (651)
T PRK06945 129 ARQTMLSNAQTLASQFNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIAKA 186 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466677777888888888888888888888888888887777777777777766543
No 285
>PRK04325 hypothetical protein; Provisional
Probab=25.44 E-value=1.8e+02 Score=18.26 Aligned_cols=33 Identities=3% Similarity=0.168 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHH
Q 033318 59 INEEVDTHNRMLERMGNDMDASRGVLSGTMDKF 91 (122)
Q Consensus 59 I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl 91 (122)
+-.-+..|...+++|+.-+..-+..+..-.+++
T Consensus 14 LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 14 LEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655553333333333
No 286
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=25.37 E-value=2.7e+02 Score=20.15 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 033318 47 DRVNLLKRLSGDINE 61 (122)
Q Consensus 47 ~~v~~Lk~~a~~I~~ 61 (122)
..+..+++....+.+
T Consensus 106 ~~l~~~~~~~~~~~~ 120 (204)
T PF04740_consen 106 KKLNQLKEQIEDLQD 120 (204)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 287
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=25.08 E-value=73 Score=18.73 Aligned_cols=13 Identities=15% Similarity=0.100 Sum_probs=7.3
Q ss_pred hhhHHHHHHHHHH
Q 033318 84 LSGTMDKFKMVFE 96 (122)
Q Consensus 84 L~~~~krl~kv~~ 96 (122)
++...+.++|+.-
T Consensus 5 ~~~~~~ElkkV~W 17 (55)
T TIGR00964 5 FKEVKAELKKVVW 17 (55)
T ss_pred HHHHHHHHhcCcC
Confidence 3445566666654
No 288
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=25.05 E-value=2.4e+02 Score=21.21 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMD 78 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d 78 (122)
+-+...-++...+|..+...||.+-..|-+|+.+-...|+-+-.=.+
T Consensus 85 ey~v~r~E~~fqeLn~ka~aLk~iLSriPdEinDR~~FLeTIK~IAS 131 (207)
T KOG4025|consen 85 EYIVSRYEQDFQELNKKAIALKRILSRIPDEINDRHAFLETIKLIAS 131 (207)
T ss_pred hHhhcCCCccHHHHHHHHHHHHHHHHhCcHhhhhHHHHHHHHHHHHH
Confidence 34444445567789999999999999999999999887776654333
No 289
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=25.04 E-value=84 Score=18.67 Aligned_cols=9 Identities=0% Similarity=0.242 Sum_probs=3.8
Q ss_pred HHHHHHHhC
Q 033318 114 FLIVYYLTR 122 (122)
Q Consensus 114 f~il~~l~k 122 (122)
+.+++|.+|
T Consensus 19 l~~f~Wavk 27 (51)
T TIGR00847 19 LVAFLWSLK 27 (51)
T ss_pred HHHHHHHHc
Confidence 333444443
No 290
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.91 E-value=5.2e+02 Score=23.36 Aligned_cols=62 Identities=18% Similarity=0.234 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hhHHhhhhhhhhHHHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMG-------NDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~-------~~~d~t~~~L~~~~krl~kv~~ 96 (122)
...++..-++|...+..|+.....=.+|+++=..-++.+. +.++.+..+=..-++|++++++
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~ 621 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788877777766654444443333344443 3334444443444455555544
No 291
>PLN00174 predicted protein; Provisional
Probab=24.86 E-value=91 Score=22.94 Aligned_cols=20 Identities=0% Similarity=0.187 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHH-HHh
Q 033318 102 RMFTLVASFVVIFLIVY-YLT 121 (122)
Q Consensus 102 ~~~~iv~l~v~lf~il~-~l~ 121 (122)
.|+.+.+.++.+|+.+| +++
T Consensus 117 ~~iKLaFYLl~FF~~ly~~mI 137 (160)
T PLN00174 117 IKAKSAFFIIIVIYTIWEWMI 137 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888888 665
No 292
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=24.79 E-value=1.1e+02 Score=28.42 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=15.8
Q ss_pred HHHHHHH---hcCCcchhHHHHHHHHHHHH
Q 033318 90 KFKMVFE---TKSSRRMFTLVASFVVIFLI 116 (122)
Q Consensus 90 rl~kv~~---~~~~~~~~~iv~l~v~lf~i 116 (122)
|++-+.= ..++|-||+|+|+++++.++
T Consensus 46 R~kY~~Y~~CATSTRim~Wilf~cvll~Iv 75 (981)
T PF03408_consen 46 RCKYLCYLCCATSTRIMAWILFVCVLLSIV 75 (981)
T ss_pred hHHHHHHHHHcchhHHHHHHHHHHHHHHHH
Confidence 5655443 35666688887666654433
No 293
>PRK09793 methyl-accepting protein IV; Provisional
Probab=24.70 E-value=4.3e+02 Score=22.30 Aligned_cols=47 Identities=9% Similarity=0.157 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHH
Q 033318 46 QDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK 92 (122)
Q Consensus 46 ~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~ 92 (122)
+..+..+...+.++....++|..-+.++...++.....+........
T Consensus 274 ~~~~~eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~~~~~~~~~ 320 (533)
T PRK09793 274 HIGIAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNAR 320 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555655555555555555555544443333
No 294
>PF13967 RSN1_TM: Late exocytosis, associated with Golgi transport
Probab=24.68 E-value=76 Score=22.39 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=15.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhC
Q 033318 99 SSRRMFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 99 ~~~~~~~iv~l~v~lf~il~~l~k 122 (122)
+++.|..+++..++.++++|++.|
T Consensus 133 s~~lw~h~v~~~i~~~~~~~~l~~ 156 (157)
T PF13967_consen 133 SSRLWAHVVFAYIFTFYVLYLLWR 156 (157)
T ss_pred CCeehHHHHHHHHHHHHHHhhhee
Confidence 344466666666777777777764
No 295
>PHA02902 putative IMV membrane protein; Provisional
Probab=24.55 E-value=91 Score=19.64 Aligned_cols=10 Identities=20% Similarity=0.511 Sum_probs=4.7
Q ss_pred HHHHHHHHhC
Q 033318 113 IFLIVYYLTR 122 (122)
Q Consensus 113 lf~il~~l~k 122 (122)
+.+++|.+||
T Consensus 16 vclliya~Yr 25 (70)
T PHA02902 16 FCLLIYAAYK 25 (70)
T ss_pred HHHHHHHHHH
Confidence 3444555543
No 296
>PF11189 DUF2973: Protein of unknown function (DUF2973); InterPro: IPR021355 This entry is represented by Bacteriophage Syn9, Gp224. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.
Probab=24.47 E-value=94 Score=19.28 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVYYL 120 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l 120 (122)
+.|+.+|+++++..+-.+
T Consensus 4 llY~~af~~L~~~a~~~m 21 (65)
T PF11189_consen 4 LLYILAFTILLFLAFRNM 21 (65)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 455555555555544333
No 297
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=24.41 E-value=2.8e+02 Score=20.08 Aligned_cols=38 Identities=5% Similarity=0.093 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDM 77 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~ 77 (122)
..++.+...+......+..+.+.+..-..........+
T Consensus 39 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (262)
T smart00283 39 ANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVV 76 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444333333333333
No 298
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=24.37 E-value=4.3e+02 Score=22.18 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHhhhhhhhhH
Q 033318 34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTH-NRMLERMGNDMDASRGVLSGT 87 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Q-n~lLD~l~~~~d~t~~~L~~~ 87 (122)
||++-++.++.-..-+..||+-=..|-+-++.| ..-.-++.+.|++.+++|.+-
T Consensus 263 LEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRiskl 317 (395)
T PF10267_consen 263 LEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKL 317 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444444444555666666666666666666 345667777777777766553
No 299
>PHA02855 anti-apoptotic membrane protein; Provisional
Probab=24.24 E-value=2e+02 Score=21.45 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhC
Q 033318 108 ASFVVIFLIVYYLTR 122 (122)
Q Consensus 108 ~l~v~lf~il~~l~k 122 (122)
+.++.++.++||+.|
T Consensus 159 f~i~~~i~~~yY~~K 173 (180)
T PHA02855 159 FVIVGIIILLYYLLK 173 (180)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444556676654
No 300
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=24.17 E-value=4.9e+02 Score=22.95 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.+.+.++=....+.+...-..|..+-.+++++++.+-.-++.+-..+...+..|..
T Consensus 134 R~~vl~~a~~L~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~~ 189 (613)
T PRK08471 134 KQALAQKTETLTNNIKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIKE 189 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677777777777777888888888888877777777666666666665543
No 301
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=24.10 E-value=94 Score=17.72 Aligned_cols=7 Identities=43% Similarity=1.269 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 033318 114 FLIVYYL 120 (122)
Q Consensus 114 f~il~~l 120 (122)
|+..|++
T Consensus 28 ~~~~~F~ 34 (42)
T PF11346_consen 28 FFIRYFI 34 (42)
T ss_pred HHHHHHH
Confidence 4433443
No 302
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=23.73 E-value=98 Score=20.59 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 033318 103 MFTLVASFV 111 (122)
Q Consensus 103 ~~~iv~l~v 111 (122)
+.+++.+++
T Consensus 52 ~GIli~f~i 60 (103)
T PF06422_consen 52 FGILIAFWI 60 (103)
T ss_pred HHHHHHHHH
Confidence 333333333
No 303
>PRK06798 fliD flagellar capping protein; Validated
Probab=23.67 E-value=2.2e+02 Score=23.92 Aligned_cols=46 Identities=9% Similarity=0.176 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 52 LKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 52 Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+..-...+.++++.-++-+++++..++....++.+....|...+.+
T Consensus 377 i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~ 422 (440)
T PRK06798 377 IGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAA 422 (440)
T ss_pred eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666666667777777777777777777777777777653
No 304
>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion
Probab=23.61 E-value=89 Score=21.99 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033318 103 MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~k 122 (122)
.++.++++++-++++|+++|
T Consensus 83 sllg~~~~v~P~i~~~~~~K 102 (125)
T PF07225_consen 83 SLLGLGFGVVPLIFYYYVLK 102 (125)
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 34444455556666777664
No 305
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=23.47 E-value=1.1e+02 Score=26.51 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKR 54 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~ 54 (122)
+|++|...+..||.
T Consensus 32 kie~L~kql~~Lk~ 45 (489)
T PF11853_consen 32 KIEALKKQLEELKA 45 (489)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445444444444
No 306
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=23.43 E-value=27 Score=24.49 Aligned_cols=44 Identities=14% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
.++.+...++.+..-...++..+.+=+..|++.+..+......+
T Consensus 25 ~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~ 68 (138)
T PF06009_consen 25 NLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLA 68 (138)
T ss_dssp --------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444443333333334444444444444444443333
No 307
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=23.28 E-value=69 Score=26.01 Aligned_cols=19 Identities=16% Similarity=0.436 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
+++.+++++++|+++|++.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~ 59 (409)
T TIGR00540 41 ITGLAIFFIIALAIIFAFE 59 (409)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666654
No 308
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.15 E-value=4.5e+02 Score=22.02 Aligned_cols=56 Identities=5% Similarity=0.065 Sum_probs=38.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.+.+...=+...+.+...-..|..+-.++++|++.+-.-++.+-..+...+..+..
T Consensus 129 r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 184 (456)
T PRK07191 129 RQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKILK 184 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666677777777777777777777777777666666666666666543
No 309
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.14 E-value=1.8e+02 Score=24.44 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIVY 118 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~ 118 (122)
||+|+++.+.+.|.+|
T Consensus 373 WiIIiLI~~eV~i~i~ 388 (399)
T KOG2861|consen 373 WIIIILIAFEVAIEIY 388 (399)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 7777666665555554
No 310
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=23.12 E-value=99 Score=17.79 Aligned_cols=6 Identities=0% Similarity=0.124 Sum_probs=2.5
Q ss_pred HHHHHh
Q 033318 116 IVYYLT 121 (122)
Q Consensus 116 il~~l~ 121 (122)
+++|.+
T Consensus 20 ~f~Wav 25 (45)
T PF03597_consen 20 AFLWAV 25 (45)
T ss_pred HHHHHH
Confidence 344443
No 311
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=23.00 E-value=3.6e+02 Score=20.88 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEV 63 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El 63 (122)
|.-.+|+.|..-|.+|+..-.....|+
T Consensus 58 ~l~~ql~~lq~ev~~LrG~~E~~~~~l 84 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQIQENQYQL 84 (263)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444455555555555554443333333
No 312
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=22.94 E-value=1.2e+02 Score=17.53 Aligned_cols=11 Identities=9% Similarity=0.368 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 033318 108 ASFVVIFLIVY 118 (122)
Q Consensus 108 ~l~v~lf~il~ 118 (122)
++++++.+++|
T Consensus 19 ~~~~Figiv~w 29 (48)
T cd01324 19 LALFFLGVVVW 29 (48)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 313
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=22.87 E-value=1.3e+02 Score=19.66 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=16.4
Q ss_pred HHHHHHHHhcC--CcchhHHHHHHHHHHHHHHHHh
Q 033318 89 DKFKMVFETKS--SRRMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 89 krl~kv~~~~~--~~~~~~iv~l~v~lf~il~~l~ 121 (122)
.+++...+.=+ .|..+++++|+++..+=+|++.
T Consensus 13 ~~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~~ 47 (85)
T PF13150_consen 13 DRLRRYCGRLSPKQRLRVVLVMLVLFAALCLYMTV 47 (85)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555554322 2335555555555555566543
No 314
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.84 E-value=3.2e+02 Score=22.21 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCC
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSS 100 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~ 100 (122)
+.++.+-+|..++..|+..+..-+.++.++ +..|+...+.....+-....-..++.-.+..
T Consensus 7 ~fe~~i~~l~~~~~~l~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~~~l~~w~~v~~ar~~ 67 (316)
T TIGR00513 7 DFEKPIAELEAKIESLRARSRDEDVDLSEE---IERLEKRSVELTKKIFSNLGAWQRLQLARHP 67 (316)
T ss_pred hhhHHHHHHHHHHHHHHhhhhcccccHHHH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHhCC
Confidence 567778899999999998776543333333 5556666666555555555555555544443
No 315
>PRK04406 hypothetical protein; Provisional
Probab=22.79 E-value=2.1e+02 Score=18.08 Aligned_cols=37 Identities=14% Similarity=0.355 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 58 DINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 58 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
++-.-+..|...+++|+..+..-+..+..-.++++.+
T Consensus 15 ~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 15 DLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777766666664444444444433
No 316
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=22.55 E-value=4.6e+02 Score=22.56 Aligned_cols=60 Identities=13% Similarity=0.134 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHH
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDK 90 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~kr 90 (122)
...+|+--......|++..=.+..++.+...-|+.|-..|..|+..|+.....+.--..+
T Consensus 46 k~aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ihkek 105 (483)
T KOG2546|consen 46 KAALEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVDIHKEK 105 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheecchh
Confidence 466677777777888888888888999999999999999999999999998877543333
No 317
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=22.39 E-value=4.2e+02 Score=23.30 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhhhh--hHHhhhhhhhhHHHHHHHHHHh
Q 033318 57 GDINEEVDTHNRMLERMGN--DMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 57 ~~I~~El~~Qn~lLD~l~~--~~d~t~~~L~~~~krl~kv~~~ 97 (122)
-.+.|-...|-+||.-|++ ..|-+...|++-..|+++.++.
T Consensus 414 d~~~d~wsynaELlVlleN~~tld~~Ds~~~~L~ekvk~qL~~ 456 (550)
T PF00509_consen 414 DKIADVWSYNAELLVLLENQRTLDLHDSNVNNLYEKVKRQLRE 456 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGT
T ss_pred ccchhhhcccHHHHHHhccccchhhhHHHHHHHHHHHHHHHhc
Confidence 3445667778888888876 4788888899999999998874
No 318
>PRK08871 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.37 E-value=5.1e+02 Score=22.97 Aligned_cols=57 Identities=7% Similarity=0.112 Sum_probs=42.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
..+.+..+=+...+.+...-.+|..+-..++.||+.+-.-++.+-..+...+..|..
T Consensus 131 aRq~vl~~A~~La~~fn~~~~~L~~~~~~vn~qi~~~V~~IN~l~~qIA~LN~qI~~ 187 (626)
T PRK08871 131 ARKVVLEKAKLISQTLNDFHETVRQQKDVTNKKLDLGVERINQIALEIRDIHRLMMR 187 (626)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346666777777777888888888888888888888877777777777777766654
No 319
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=22.27 E-value=90 Score=20.26 Aligned_cols=15 Identities=7% Similarity=0.022 Sum_probs=8.0
Q ss_pred hhHHHHHHHHHHHHH
Q 033318 103 MFTLVASFVVIFLIV 117 (122)
Q Consensus 103 ~~~iv~l~v~lf~il 117 (122)
+++++++++++.+++
T Consensus 31 faFV~~L~~fL~~li 45 (81)
T PF11057_consen 31 FAFVGLLCLFLGLLI 45 (81)
T ss_pred ehHHHHHHHHHHHHH
Confidence 555555555554443
No 320
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=22.10 E-value=68 Score=27.46 Aligned_cols=16 Identities=25% Similarity=0.721 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhC
Q 033318 107 VASFVVIFLIVYYLTR 122 (122)
Q Consensus 107 v~l~v~lf~il~~l~k 122 (122)
+++++..|+++||+++
T Consensus 48 iva~vaav~llwwlv~ 63 (531)
T COG3898 48 IVALVAAVLLLWWLVR 63 (531)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566778888764
No 321
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=22.02 E-value=2e+02 Score=23.30 Aligned_cols=17 Identities=18% Similarity=0.470 Sum_probs=10.8
Q ss_pred hhhhhhhHHHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 80 t~~~L~~~~krl~kv~~ 96 (122)
.+..|..+.+++.+..+
T Consensus 137 ~sG~L~~~L~~~a~~~~ 153 (399)
T TIGR02120 137 ASGALDAVLERLADYLE 153 (399)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 44566667777666665
No 322
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.95 E-value=2.5e+02 Score=19.64 Aligned_cols=16 Identities=19% Similarity=0.449 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLL 52 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~L 52 (122)
.....|+.|.+++..|
T Consensus 48 ~~~~~l~~i~~~l~~L 63 (141)
T PF13874_consen 48 QHRERLKEINDKLEEL 63 (141)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 323
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=21.89 E-value=3.1e+02 Score=19.62 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=24.2
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 67 NRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 67 n~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.+..+-+++.+.++...|..++..+.++..+
T Consensus 58 p~~~~~~~~~L~~l~~~l~~a~~~~~~l~~~ 88 (145)
T PF14942_consen 58 PRCIELMQQNLEQLLERLQAANSMCSRLQQK 88 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777888888888888888888888764
No 324
>PF11031 Phage_holin_T: Bacteriophage T holin; InterPro: IPR020982 One mechanism by which bacteriophages effect host lysis begins with the accumulation of a holin in the host membrane and an endolysin in the host cytoplasm during late gene expression. At an allele-specific time, the holin disrupts the membrane, thus allowing the endolysin to enter the periplasm and degrade the cell wall peptidoglycan. This entry represents a specific holin, known as T, which has an unusual C-terminal periplasmic domain thought to be involved in the transduction of environmental information for the real-time control of lysis timing [].
Probab=21.84 E-value=1.7e+02 Score=22.54 Aligned_cols=23 Identities=4% Similarity=0.095 Sum_probs=13.6
Q ss_pred hhhHHHHHHHHHHhcCCcchhHH
Q 033318 84 LSGTMDKFKMVFETKSSRRMFTL 106 (122)
Q Consensus 84 L~~~~krl~kv~~~~~~~~~~~i 106 (122)
...-..-+.++++...+++.++.
T Consensus 9 ~~~l~~lLdrlfkd~~tgk~L~~ 31 (216)
T PF11031_consen 9 SDILFGLLDRLFKDNKTGKVLFS 31 (216)
T ss_pred HHHHHHHHHHHHhccCcHHHHHH
Confidence 33445556777876766654444
No 325
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.81 E-value=1e+02 Score=26.36 Aligned_cols=31 Identities=6% Similarity=0.268 Sum_probs=27.8
Q ss_pred HHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 67 NRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 67 n~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.++||++.+++.-++-++.+-.+.++.++++
T Consensus 337 skLLD~IQDNYtfaQpGIq~kV~~L~eLv~R 367 (484)
T KOG1092|consen 337 SKLLDGIQDNYTFAQPGIQRKVKNLKELVQR 367 (484)
T ss_pred HHHHHHhhhhhhhcChhHHHHHHHHHHHHHH
Confidence 5799999999999999999999999988874
No 326
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=21.78 E-value=4.3e+02 Score=21.29 Aligned_cols=65 Identities=14% Similarity=0.252 Sum_probs=42.5
Q ss_pred hhHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhh-------hhhhHHHHHHHHHH
Q 033318 32 EIDEHDNERA--------LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRG-------VLSGTMDKFKMVFE 96 (122)
Q Consensus 32 ~~l~~eqD~~--------Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~-------~L~~~~krl~kv~~ 96 (122)
..+.+||++. +-.|+-.+...|..+..+..--++=++.+.+|+++++..+. .|+.+.+++.++-+
T Consensus 220 R~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 220 RTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred HHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4556666653 45566777777777766666555556777888888887654 45666666555543
No 327
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=21.71 E-value=3.8e+02 Score=20.90 Aligned_cols=61 Identities=20% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhhhhhH---HhhhhhhhhHHHHHHHHHHhc----CCc-chhHH-HHHHHHHHHHHHHHhC
Q 033318 62 EVDTHNRMLERMGNDM---DASRGVLSGTMDKFKMVFETK----SSR-RMFTL-VASFVVIFLIVYYLTR 122 (122)
Q Consensus 62 El~~Qn~lLD~l~~~~---d~t~~~L~~~~krl~kv~~~~----~~~-~~~~i-v~l~v~lf~il~~l~k 122 (122)
-|+.|-..|+.....+ +.....|..-...+++++.+. ..+ .+|.+ ..+.++++-+-|+-.|
T Consensus 152 ~v~~~i~~l~~~r~~~~~~~~~~~~L~~~~~dl~~lF~~vkkD~aDPSLiWvmistGg~IvltLTYVGwR 221 (233)
T TIGR02878 152 RVDSHLSYLENFRFQQRSEDEKEEQLSLMRGDLKALFDGVKEDEADPSLLWVMISTGGIIVATLTYVGWR 221 (233)
T ss_pred HHHHHHHHHHhhhhhccChHHHHHHHHHHHHHHHHHHcccccCCCCcHHHHHHHHhhHHHHHHHhhhhhh
Confidence 3455556666664443 333445556666677777532 123 34443 3455666666666543
No 328
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=21.61 E-value=3.3e+02 Score=22.05 Aligned_cols=15 Identities=13% Similarity=0.302 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHH
Q 033318 52 LKRLSGDINEEVDTH 66 (122)
Q Consensus 52 Lk~~a~~I~~El~~Q 66 (122)
++....+|.++++.-
T Consensus 94 ~~~~~~~i~~~l~~G 108 (399)
T PRK10573 94 WQALLQDLAHQLEQG 108 (399)
T ss_pred HHHHHHHHHHHHHCC
Confidence 344455555555443
No 329
>COG1422 Predicted membrane protein [Function unknown]
Probab=21.56 E-value=3.7e+02 Score=20.49 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=15.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHh
Q 033318 100 SRRMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 100 ~~~~~~iv~l~v~lf~il~~l~ 121 (122)
.+.+.++.++.+.+|..+++.+
T Consensus 122 fkPM~~~~v~tI~~F~Wl~~~~ 143 (201)
T COG1422 122 FKPMLYISVLTIPFFAWLRWFV 143 (201)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 3467777777777777777654
No 330
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=21.47 E-value=62 Score=18.55 Aligned_cols=12 Identities=33% Similarity=0.503 Sum_probs=4.5
Q ss_pred hHHHHHHHHHHH
Q 033318 104 FTLVASFVVIFL 115 (122)
Q Consensus 104 ~~iv~l~v~lf~ 115 (122)
..++++++++|+
T Consensus 28 ~~~~~~~~li~l 39 (44)
T PF07835_consen 28 GTIAIAAILIFL 39 (44)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 331
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=21.41 E-value=3.2e+02 Score=19.59 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.+.++.++.+...+..+..--....++...-...+......++..........+.+..+.
T Consensus 91 ~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 91 QQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444455555555555555555555555554
No 332
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=21.30 E-value=3.2e+02 Score=19.60 Aligned_cols=17 Identities=12% Similarity=0.491 Sum_probs=8.2
Q ss_pred chhHHHHHHHHHHHHHH
Q 033318 102 RMFTLVASFVVIFLIVY 118 (122)
Q Consensus 102 ~~~~iv~l~v~lf~il~ 118 (122)
++|--+.+++.+|+++.
T Consensus 152 Klyr~LGvl~G~~lvIl 168 (170)
T PF09548_consen 152 KLYRSLGVLGGLFLVIL 168 (170)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45555544444444443
No 333
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.24 E-value=2.7e+02 Score=22.18 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=40.7
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 45 LQDRVNLLK------RLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 45 L~~~v~~Lk------~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
+.++-..|+ ..|..--.++.+|...|+.++..+|.....++.+-+.+..+-.
T Consensus 78 l~St~~~L~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~ 135 (273)
T KOG3065|consen 78 LKSTRRMLKLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKG 135 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 445544443 3566667799999999999999999999999998888877644
No 334
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=21.24 E-value=5.6e+02 Score=22.40 Aligned_cols=56 Identities=11% Similarity=0.143 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGT 87 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~ 87 (122)
+.+...-....+.+...=..|+.+-.+++.||...-.-++.|-..+......+.++
T Consensus 134 ~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~ 189 (552)
T COG1256 134 QAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV 189 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555666666777777777777888888888888777777777777777666665
No 335
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=21.23 E-value=1.7e+02 Score=16.94 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=8.0
Q ss_pred hhhHHHHHHHHHH
Q 033318 84 LSGTMDKFKMVFE 96 (122)
Q Consensus 84 L~~~~krl~kv~~ 96 (122)
++...+.++++..
T Consensus 6 ~~~~~~Elkkv~W 18 (57)
T PF00584_consen 6 FREVKKELKKVTW 18 (57)
T ss_dssp HHCHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 3455666777765
No 336
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.17 E-value=2.5e+02 Score=18.39 Aligned_cols=44 Identities=11% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
+.++....|+..+..|+. ...+++.+-..||+++..++.....+
T Consensus 39 ~~~~~~~~l~~~~~~l~~----k~~~l~~~l~~Id~Ie~~V~~LE~~v 82 (99)
T PF10046_consen 39 KMKDIAAGLEKNLEDLNQ----KYEELQPYLQQIDQIEEQVTELEQTV 82 (99)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 34567777778888888877655543
No 337
>PRK13895 conjugal transfer protein TraM; Provisional
Probab=21.11 E-value=3.3e+02 Score=19.69 Aligned_cols=10 Identities=0% Similarity=0.288 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 033318 55 LSGDINEEVD 64 (122)
Q Consensus 55 ~a~~I~~El~ 64 (122)
++..=++..+
T Consensus 58 iasrW~~dak 67 (144)
T PRK13895 58 IASRWGDDAK 67 (144)
T ss_pred HHHHHhHHHH
Confidence 3333333333
No 338
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=21.04 E-value=4.5e+02 Score=21.22 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERM 73 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l 73 (122)
..+-|+ -|++.|..+-..+..|+.+|.+|..++.+.
T Consensus 46 V~afD~---~i~~~l~~f~~~S~~igg~V~~~a~~v~~a 81 (312)
T PF01213_consen 46 VEAFDE---LINGPLKPFVELSKKIGGDVAEQAQLVKKA 81 (312)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345554 378899999999999999999998877654
No 339
>PRK06799 flgK flagellar hook-associated protein FlgK; Validated
Probab=20.96 E-value=5e+02 Score=21.68 Aligned_cols=55 Identities=11% Similarity=0.216 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
+.+..+=....+.+...-..|..+-.+++++++.+-.-++.+-..+...+..+..
T Consensus 135 ~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~~ 189 (431)
T PRK06799 135 DTLISETGKFTSQLNRLAKGLDELEAQTTEDIEAHVNEFNRLAKSLAEANKKIGQ 189 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666677777777777777777888777777777776666666666654
No 340
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=20.85 E-value=5.7e+02 Score=22.32 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRM 69 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~l 69 (122)
..+..+.++.++++++++..|++.-..+ .|+--||++
T Consensus 427 ~~L~~~~~~d~~~~~~~i~~l~~~~~sl-~~~v~qnr~ 463 (561)
T PF00429_consen 427 RQLSNALEEDLQALEDSISALQEQLTSL-AEVVLQNRR 463 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCch
Confidence 5566788888888888888888755554 456667763
No 341
>COG1766 fliF Flagellar basal body M-ring protein [Cell motility and secretion]
Probab=20.81 E-value=73 Score=27.77 Aligned_cols=19 Identities=26% Similarity=0.665 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
+++.+.+.+++|+++|+++
T Consensus 444 ~~~~~~~~l~~~lv~~~~~ 462 (545)
T COG1766 444 SLIPVALYLVVFLVLFIIV 462 (545)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555544
No 342
>PRK09793 methyl-accepting protein IV; Provisional
Probab=20.78 E-value=5.2e+02 Score=21.81 Aligned_cols=58 Identities=10% Similarity=0.219 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
+-.+.++.+...+........+|..-+++|....+++...++........+......+
T Consensus 433 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 490 (533)
T PRK09793 433 NAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNASLVEEA 490 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344566666667777777777777777777777777766666655555444444433
No 343
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=20.75 E-value=1.1e+02 Score=23.69 Aligned_cols=16 Identities=25% Similarity=0.627 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhC
Q 033318 107 VASFVVIFLIVYYLTR 122 (122)
Q Consensus 107 v~l~v~lf~il~~l~k 122 (122)
+.+.|.++|++||++|
T Consensus 208 v~ilca~~f~lyllfr 223 (236)
T COG5522 208 VLILCAVWFLLYLLFR 223 (236)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4566788899999875
No 344
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=20.72 E-value=1.3e+02 Score=22.71 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=5.5
Q ss_pred HHHHHHHHHhcC
Q 033318 88 MDKFKMVFETKS 99 (122)
Q Consensus 88 ~krl~kv~~~~~ 99 (122)
++++-+.+.+.+
T Consensus 11 ~~~~~~~~~k~~ 22 (200)
T PRK10617 11 IKRLWKWWRTPS 22 (200)
T ss_pred HHHHHHHHHhhH
Confidence 345555554433
No 345
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=20.65 E-value=84 Score=25.48 Aligned_cols=19 Identities=5% Similarity=0.349 Sum_probs=10.4
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
++..+++++++|+++|++.
T Consensus 41 l~~~~~~~~~~~~~~~~~~ 59 (398)
T PRK10747 41 VTGLAIILILAMVVLFAIE 59 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555566566654
No 346
>PRK08724 fliD flagellar capping protein; Validated
Probab=20.56 E-value=4.3e+02 Score=23.86 Aligned_cols=48 Identities=6% Similarity=0.018 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 50 NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 50 ~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+.++.-...+++.++.-++-++.++..++....++......|..++.+
T Consensus 613 G~I~~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFtAMD~~msq 660 (673)
T PRK08724 613 GSIRTREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFAAMQDATGK 660 (673)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455666666666677788888888888888777777777653
No 347
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=20.54 E-value=2.6e+02 Score=18.35 Aligned_cols=45 Identities=9% Similarity=0.161 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 85 (122)
.++.|++.|+.|+.-...+..+++.=..-.+.--....+++.+|.
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiD 69 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLD 69 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 677888888888887777777776655555555555555544444
No 348
>PF06638 Strabismus: Strabismus protein; InterPro: IPR009539 This family consists of several strabismus (STB) or Van Gogh-like (VANGL) proteins 1 and 2. The exact function of this family is unknown. It is thought, however that STB1 gene and STB2 may be potent tumour suppressor gene candidates [].; GO: 0007275 multicellular organismal development, 0016021 integral to membrane
Probab=20.54 E-value=93 Score=26.96 Aligned_cols=10 Identities=50% Similarity=1.105 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 033318 111 VVIFLIVYYL 120 (122)
Q Consensus 111 v~lf~il~~l 120 (122)
+++|++.||+
T Consensus 174 vfl~~~syWL 183 (505)
T PF06638_consen 174 VFLFLFSYWL 183 (505)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 349
>PHA02414 hypothetical protein
Probab=20.38 E-value=2.9e+02 Score=18.81 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033318 45 LQDRVNLLKRLSGDINEEVDTHN 67 (122)
Q Consensus 45 L~~~v~~Lk~~a~~I~~El~~Qn 67 (122)
|...|..|+.+-..+...+.-|.
T Consensus 34 L~~av~ELRdivvslDKd~Av~s 56 (111)
T PHA02414 34 LEVAVAELRDIVVSLDKDVAVNS 56 (111)
T ss_pred HHHHHHHHHHHHHHhhhHhhhhH
Confidence 44455555555544444444333
No 350
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=20.29 E-value=3.5e+02 Score=19.66 Aligned_cols=16 Identities=0% Similarity=0.175 Sum_probs=10.2
Q ss_pred hhhHHHHHHHHHHHHH
Q 033318 31 HEIDEHDNERALEGLQ 46 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~ 46 (122)
|..-..|-||+.|..-
T Consensus 34 ~~~~~deldEEfD~~p 49 (156)
T PF08372_consen 34 DSAHPDELDEEFDTFP 49 (156)
T ss_pred ccCCcchhhhhhcccc
Confidence 4444567777777655
No 351
>PF15222 KAR: Kidney androgen-regulated
Probab=20.23 E-value=1.3e+02 Score=20.08 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhh
Q 033318 58 DINEEVDTHNRMLERMGNDMDAS 80 (122)
Q Consensus 58 ~I~~El~~Qn~lLD~l~~~~d~t 80 (122)
.|+.|+ |+.++|-|+..+|+.
T Consensus 8 sin~el--q~si~d~lns~~dql 28 (103)
T PF15222_consen 8 SINKEL--QNSIIDILNSVFDQL 28 (103)
T ss_pred HHHHHH--HHHHHHHHHHHHHHh
Confidence 356665 566777777777654
No 352
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=20.21 E-value=2.2e+02 Score=24.68 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=10.7
Q ss_pred hhhhHHHHHHHHHHhcCC
Q 033318 83 VLSGTMDKFKMVFETKSS 100 (122)
Q Consensus 83 ~L~~~~krl~kv~~~~~~ 100 (122)
.++...+++...+++-+.
T Consensus 4 ~~~~~~~~~~~~~~~l~~ 21 (542)
T PRK06007 4 KLKELMEKLKEFLQKLSK 21 (542)
T ss_pred hHHHHHHHHHHHHHhcCh
Confidence 345556677777765443
No 353
>PRK02251 putative septation inhibitor protein; Reviewed
Probab=20.14 E-value=1.5e+02 Score=19.66 Aligned_cols=7 Identities=71% Similarity=1.602 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 033318 114 FLIVYYL 120 (122)
Q Consensus 114 f~il~~l 120 (122)
.+++||+
T Consensus 48 WlvvyYl 54 (87)
T PRK02251 48 WLVVYYL 54 (87)
T ss_pred HHHHHhh
Confidence 3334443
No 354
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=20.06 E-value=4.1e+02 Score=21.89 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHN 67 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn 67 (122)
.-|+.+..+...+ +.+-.+|...++.|.
T Consensus 22 ~ld~~i~~l~~~i---~~ld~eI~~~v~~q~ 49 (383)
T PF04100_consen 22 NLDELIAKLRKEI---RELDEEIKELVREQS 49 (383)
T ss_pred hHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 4444444444333 334445555555554
No 355
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=20.05 E-value=4.7e+02 Score=21.03 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHH---HHHHhcCCc----chhHHHHHHHHHHHHH
Q 033318 45 LQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK---MVFETKSSR----RMFTLVASFVVIFLIV 117 (122)
Q Consensus 45 L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~---kv~~~~~~~----~~~~iv~l~v~lf~il 117 (122)
...-|.+|..--.+++.=..+=..+.-+=+.-+|+..--+.++.-.++ +=+.++... .-|-.+++++++++.+
T Consensus 193 r~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv~l 272 (283)
T COG5325 193 RDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVVLL 272 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHHHH
Confidence 333444444333333333333333444444455555555555544444 333344431 2788888888777777
Q ss_pred HHH
Q 033318 118 YYL 120 (122)
Q Consensus 118 ~~l 120 (122)
+++
T Consensus 273 fv~ 275 (283)
T COG5325 273 FVS 275 (283)
T ss_pred HHH
Confidence 765
Done!