Query 033318
Match_columns 122
No_of_seqs 106 out of 831
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:46:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sfc_D Protein (SNAP-25B), pro 99.8 6.6E-19 2.3E-23 115.9 8.7 78 18-97 9-86 (87)
2 2nps_D Syntaxin-6; vesicle fus 99.8 6.9E-19 2.4E-23 114.6 7.1 73 30-102 9-81 (82)
3 1n7s_D SNAP-25A; neuronal snar 99.7 4.3E-18 1.5E-22 106.6 7.4 64 32-95 2-65 (66)
4 1gl2_D Syntaxin 8, vesicle tra 99.7 4.9E-18 1.7E-22 106.0 6.5 64 33-96 2-65 (65)
5 1l4a_D S-SNAP25 fusion protein 99.7 9.8E-18 3.3E-22 110.4 7.6 77 18-96 10-86 (87)
6 3b5n_D Protein transport prote 99.6 3.2E-15 1.1E-19 93.2 7.7 62 32-93 2-63 (64)
7 3hd7_B Syntaxin-1A; membrane p 99.2 2.2E-10 7.4E-15 77.9 10.5 63 34-96 15-77 (109)
8 1jth_B Syntaxin 1A; coiled-coi 98.2 1.7E-05 5.7E-10 50.3 9.3 63 35-97 5-67 (77)
9 2nps_B Syntaxin 13, vesicle-as 98.0 4.3E-05 1.5E-09 47.7 8.2 61 37-97 3-63 (71)
10 3b5n_B Protein SSO1; snare com 97.9 0.00021 7.1E-09 44.3 9.5 62 35-96 5-66 (69)
11 1sfc_B Protein (syntaxin 1A), 97.8 0.00026 9E-09 45.3 9.7 66 33-98 14-79 (83)
12 1gl2_B Syntaxin 7; membrane pr 97.8 0.00011 3.8E-09 45.1 7.3 59 36-94 5-63 (65)
13 1n7s_B Syntaxin 1A; neuronal s 97.8 0.00026 8.9E-09 43.7 8.6 60 35-94 7-66 (68)
14 3hd7_A Vesicle-associated memb 96.9 0.013 4.4E-07 38.0 9.3 55 40-95 5-63 (91)
15 1dn1_B Syntaxin 1A, syntaxin b 95.8 0.0043 1.5E-07 47.4 2.6 63 35-97 195-257 (267)
16 2kog_A Vesicle-associated memb 94.7 0.0053 1.8E-07 41.9 0.0 41 41-82 34-75 (119)
17 2xhe_B Syntaxin1; exocytosis, 93.9 0.011 3.7E-07 45.1 0.2 61 36-96 213-273 (279)
18 3c98_B Syntaxin-1A; protein co 93.7 0.031 1.1E-06 41.1 2.3 63 35-97 207-269 (279)
19 1n7s_C SNAP-25A; neuronal snar 92.9 1.1 3.6E-05 28.1 9.4 57 39-95 19-78 (79)
20 1nhl_A Synaptosomal-associated 92.3 0.29 9.8E-06 28.5 4.7 43 50-92 10-52 (54)
21 2kog_A Vesicle-associated memb 92.2 0.029 1E-06 38.1 0.3 56 32-95 36-91 (119)
22 2nps_C Vesicle transport throu 89.7 2.5 8.6E-05 26.4 9.0 49 49-97 28-76 (81)
23 1gl2_C VTI1B, vesicle transpor 88.5 2.7 9.1E-05 25.1 7.2 55 41-95 10-64 (65)
24 3efg_A Protein SLYX homolog; x 87.3 3.3 0.00011 25.8 6.9 53 36-88 10-62 (78)
25 4ev6_A Magnesium transport pro 83.9 13 0.00043 28.5 10.7 16 80-95 271-286 (339)
26 1gmj_A ATPase inhibitor; coile 80.9 5.6 0.00019 25.3 5.9 28 59-86 49-76 (84)
27 1l4a_C S-SNAP25 fusion protein 79.7 5 0.00017 25.3 5.4 38 55-92 42-79 (83)
28 3b5n_C Protein transport prote 77.0 10 0.00034 23.1 9.1 57 39-95 8-67 (70)
29 3hd7_B Syntaxin-1A; membrane p 76.4 13 0.00045 24.2 10.0 57 36-92 24-80 (109)
30 3a7p_A Autophagy protein 16; c 71.9 23 0.00078 24.8 9.0 61 37-97 65-125 (152)
31 1ic2_A Tropomyosin alpha chain 71.1 15 0.00053 22.5 8.4 66 33-98 10-78 (81)
32 2rdd_B UPF0092 membrane protei 70.3 3.9 0.00013 21.7 2.6 11 110-120 9-19 (37)
33 2kwh_A RAla-binding protein 1; 68.3 4.1 0.00014 24.0 2.6 22 57-78 6-27 (56)
34 2iub_A CORA, divalent cation t 68.0 39 0.0013 26.0 10.8 15 80-94 295-309 (363)
35 4i0x_B ESAT-6-like protein MAB 65.8 22 0.00075 22.3 8.5 55 42-96 13-77 (103)
36 3hd7_A Vesicle-associated memb 65.7 22 0.00076 22.3 9.3 56 32-88 8-63 (91)
37 2pjw_V Vacuolar protein sortin 65.5 17 0.00057 23.3 5.4 42 38-80 31-73 (91)
38 2v71_A Nuclear distribution pr 65.5 36 0.0012 24.6 9.8 53 32-84 41-93 (189)
39 1jdm_A Sarcolipin; helix, memb 61.4 13 0.00045 18.9 3.4 20 103-122 8-27 (31)
40 3na7_A HP0958; flagellar bioge 61.0 38 0.0013 24.9 7.4 55 39-93 31-85 (256)
41 1ezj_A Nucleocapsid phosphopro 56.8 38 0.0013 22.2 5.9 35 36-70 69-103 (115)
42 3p8c_F ABL interactor 2; actin 56.5 49 0.0017 23.3 9.3 60 31-90 45-104 (159)
43 1deb_A APC protein, adenomatou 56.4 26 0.0009 20.1 5.7 38 43-80 6-43 (54)
44 3u1c_A Tropomyosin alpha-1 cha 55.3 38 0.0013 21.6 7.9 56 41-96 24-79 (101)
45 3din_D Preprotein translocase 55.1 26 0.00089 20.7 4.6 17 80-96 4-20 (65)
46 3zrx_A AF1503 protein, osmolar 50.7 36 0.0012 20.0 8.8 64 33-96 41-108 (115)
47 1h7c_A Tubulin-specific chaper 47.3 50 0.0017 21.5 5.5 51 46-97 34-84 (108)
48 3u59_A Tropomyosin beta chain; 47.2 52 0.0018 20.8 7.9 54 42-95 25-78 (101)
49 1l4a_A Synaptobrevin; snare, s 45.9 49 0.0017 20.1 5.4 28 65-92 40-70 (80)
50 3oja_B Anopheles plasmodium-re 44.9 1.2E+02 0.0041 24.3 9.7 44 54-97 537-580 (597)
51 1jcd_A Major outer membrane li 44.2 44 0.0015 19.1 6.8 18 37-54 8-25 (52)
52 1m1j_B Fibrinogen beta chain; 42.5 1.4E+02 0.0047 24.4 9.4 15 40-54 100-114 (464)
53 3mk7_C Cytochrome C oxidase, C 41.1 18 0.00061 27.4 2.8 20 102-121 56-75 (311)
54 3nmd_A CGMP dependent protein 40.5 62 0.0021 19.8 5.8 46 49-94 21-66 (72)
55 3oja_A Leucine-rich immune mol 38.3 1.4E+02 0.0049 23.4 9.7 60 36-95 424-483 (487)
56 3dl8_C SECE; RECA-type ATPase 38.2 29 0.00098 20.5 2.9 15 82-96 6-20 (65)
57 1qsd_A Protein (beta-tubulin b 37.8 82 0.0028 20.4 5.8 51 46-97 31-82 (106)
58 1oxj_A RNA-binding protein sma 37.6 34 0.0012 24.4 3.7 65 32-97 32-96 (173)
59 3efg_A Protein SLYX homolog; x 37.6 70 0.0024 19.6 5.6 39 58-96 18-56 (78)
60 1a93_B MAX protein, coiled coi 37.0 22 0.00076 18.7 1.9 12 61-72 17-28 (34)
61 3h6p_C ESAT-6-like protein ESX 36.2 63 0.0021 19.6 4.5 55 42-96 8-70 (96)
62 3fym_A Putative uncharacterize 35.8 6.8 0.00023 25.9 -0.3 25 52-79 54-78 (130)
63 3kqg_A Langerin, C-type lectin 34.9 84 0.0029 21.0 5.3 31 41-71 17-47 (182)
64 2d4y_A HAP1, flagellar HOOK-as 33.1 1.8E+02 0.0062 23.0 8.1 58 30-87 65-122 (463)
65 3gwk_C SAG1039, putative uncha 32.9 82 0.0028 18.9 8.0 29 45-73 13-41 (98)
66 2dnx_A Syntaxin-12; snare, HAB 32.3 81 0.0028 20.8 4.8 65 32-97 13-77 (130)
67 3zx6_A HAMP, methyl-accepting 31.1 1.7E+02 0.0059 22.1 9.0 58 37-94 224-281 (341)
68 2l34_A TYRO protein tyrosine k 30.8 43 0.0015 17.3 2.5 14 109-122 19-32 (33)
69 3fav_B ESAT-6, 6 kDa early sec 30.7 88 0.003 18.6 6.8 54 43-96 8-69 (94)
70 1qu7_A Methyl-accepting chemot 30.5 1.5E+02 0.0052 21.3 6.9 58 37-94 144-201 (227)
71 2qyw_A Vesicle transport throu 29.6 1.1E+02 0.0038 19.4 8.4 55 32-86 18-81 (102)
72 1s94_A S-syntaxin; three helix 29.2 1.3E+02 0.0045 20.5 5.6 59 37-95 47-108 (180)
73 3mxz_A Tubulin-specific chaper 28.9 1.3E+02 0.0043 19.9 6.0 50 47-97 36-85 (116)
74 2ieq_A S glycoprotein, spike g 28.9 84 0.0029 20.7 4.2 34 37-70 73-106 (109)
75 1ic2_A Tropomyosin alpha chain 28.9 99 0.0034 18.7 6.6 51 43-93 2-52 (81)
76 1z65_A PRPLP, prion-like prote 28.2 36 0.0012 17.3 1.8 12 103-114 7-18 (30)
77 2cly_C ATP synthase coupling f 28.0 48 0.0017 20.5 2.7 34 5-48 17-50 (77)
78 3ghg_B Fibrinogen beta chain; 27.3 2.5E+02 0.0087 22.9 8.0 26 36-61 98-123 (461)
79 1rh5_B Preprotein translocase 27.0 78 0.0027 19.3 3.6 25 74-98 2-26 (74)
80 1vcs_A Vesicle transport throu 26.7 1.2E+02 0.0042 19.1 6.3 53 34-86 10-70 (102)
81 2l9u_A Receptor tyrosine-prote 26.5 52 0.0018 17.5 2.3 10 106-115 12-21 (40)
82 1qoy_A Hemolysin E; toxin, mem 24.4 2.5E+02 0.0086 21.8 7.0 60 36-96 19-82 (318)
83 1ez3_A Syntaxin-1A; three heli 24.3 1.4E+02 0.0048 18.9 5.2 22 37-58 16-37 (127)
84 3cx5_D Cytochrome C1, heme pro 23.7 42 0.0014 25.2 2.2 17 80-96 179-195 (248)
85 4h22_A Leucine-rich repeat fli 23.5 1.6E+02 0.0054 19.2 6.7 46 40-85 37-82 (103)
86 1lwu_C Fibrinogen gamma chain; 23.5 2.6E+02 0.0088 21.6 7.3 50 36-85 8-57 (323)
87 3zx6_A HAMP, methyl-accepting 23.1 2.4E+02 0.0083 21.2 9.7 50 41-90 60-109 (341)
88 3thf_A Protein shroom; coiled- 22.9 2.2E+02 0.0074 20.5 7.2 49 32-80 11-59 (190)
89 3v86_A De novo design helix; c 22.7 77 0.0026 15.3 3.8 21 45-65 5-25 (27)
90 3iyk_A VP5; icosahedral virus; 22.7 3.3E+02 0.011 22.6 8.6 64 32-96 110-174 (526)
91 3g67_A Methyl-accepting chemot 22.6 2.2E+02 0.0075 20.4 9.7 45 42-86 27-71 (213)
92 2yiu_B Cytochrome C1, heme pro 22.1 47 0.0016 25.2 2.2 17 80-96 201-217 (263)
93 2vs0_A Virulence factor ESXA; 22.0 1.3E+02 0.0045 17.7 8.0 16 49-64 15-30 (97)
94 1fio_A SSO1 protein; four heli 21.5 2E+02 0.0068 19.6 5.5 23 36-58 12-34 (196)
95 3oja_B Anopheles plasmodium-re 21.1 3.2E+02 0.011 21.8 9.5 31 65-95 534-564 (597)
96 4i0x_A ESAT-6-like protein MAB 21.0 1.5E+02 0.0051 17.9 7.6 52 44-95 4-63 (94)
97 3mtu_E Head morphogenesis prot 20.8 1.6E+02 0.0054 18.2 4.6 27 38-64 42-68 (77)
98 1s0p_A CAP, adenylyl cyclase-a 20.2 2.3E+02 0.008 19.9 5.7 28 44-71 8-35 (176)
99 2kse_A Sensor protein QSEC; me 20.2 82 0.0028 20.3 3.0 14 109-122 171-184 (186)
No 1
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.78 E-value=6.6e-19 Score=115.93 Aligned_cols=78 Identities=18% Similarity=0.365 Sum_probs=70.5
Q ss_pred ccCCCccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 18 IEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 18 ~~~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.|.++|.... +++.+++|||+.|+.|+..|++||++|.+|++||+.||.+||+|+.++|++..+|..+++|+++++++
T Consensus 9 ~~s~~yi~~~--~~d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 9 AISGGFIRRV--TNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp ---CCCSCCS--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCchhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 5778888854 57999999999999999999999999999999999999999999999999999999999999998764
No 2
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=6.9e-19 Score=114.61 Aligned_cols=73 Identities=23% Similarity=0.357 Sum_probs=61.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhcCCcc
Q 033318 30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRR 102 (122)
Q Consensus 30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~~~~~ 102 (122)
.++.+++|||+.||.|+++|++||++|.+||+||++||.+||+|+++||++..+|+.+++|+.++++++++++
T Consensus 9 ~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 9 GGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp ---------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 4567788999999999999999999999999999999999999999999999999999999999999887763
No 3
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.74 E-value=4.3e-18 Score=106.56 Aligned_cols=64 Identities=19% Similarity=0.379 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
+.+|.|||+.|+.|+++|++||++|.+||+||+.||.+||+++++||++..+|+.+++|+.+++
T Consensus 2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999999999999999999999999999999875
No 4
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.73 E-value=4.9e-18 Score=105.98 Aligned_cols=64 Identities=16% Similarity=0.334 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 33 IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 33 ~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
.+++|||+.||.|+++|++||++|.+||+||+.||.+||+|+++||++..+|+.+++|+.++.+
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999999999999999999999999999999999998864
No 5
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.73 E-value=9.8e-18 Score=110.42 Aligned_cols=77 Identities=14% Similarity=0.303 Sum_probs=70.3
Q ss_pred ccCCCccCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 18 IEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 18 ~~~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
.|.|+|.... +.+.++.|||+.|+.|+..|++||++|.+|++||+.||.+||++++++|++..+|..+++|++++++
T Consensus 10 ~~~~~~i~~~--~~d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~ 86 (87)
T 1l4a_D 10 GPSSGYVTRI--TNDAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK 86 (87)
T ss_dssp -CCSSSSCCS--SCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred CCCchHHhcc--chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4677877655 5678999999999999999999999999999999999999999999999999999999999999875
No 6
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.60 E-value=3.2e-15 Score=93.22 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=60.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
+.+|.|+|+.|+.|++.+++||++|.+||+||+.||.+||+++.+++++..++..+++|+.+
T Consensus 2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999999999999999999999999999999999999999999999999999999976
No 7
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.19 E-value=2.2e-10 Score=77.87 Aligned_cols=63 Identities=11% Similarity=0.237 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 34 DEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
..++-++.+..|+.++..|+++..++...|.+|..++|.++++++++...+..+.+.+++..+
T Consensus 15 ~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (109)
T 3hd7_B 15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888899999999999999999999999999999999999999999999999999999864
No 8
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=98.21 E-value=1.7e-05 Score=50.28 Aligned_cols=63 Identities=11% Similarity=0.213 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.++-.+.+..|..++..|+.+..++..-|.+|..+||.++.+++.+...+..+.+.+.+..+.
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~ 67 (77)
T 1jth_B 5 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999999874
No 9
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=98.01 E-value=4.3e-05 Score=47.67 Aligned_cols=61 Identities=10% Similarity=0.191 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+-.+.+..|..++..|+.+..+|..-|.+|..+||.++.+++.+...+..+...+.+..+.
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467789999999999999999999999999999999999999999999999999998864
No 10
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=97.87 E-value=0.00021 Score=44.27 Aligned_cols=62 Identities=11% Similarity=0.160 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
.++-.+.+..|..++..|+.+..++..-|.+|..+||.++.+++.+...+..+.+.+.+..+
T Consensus 5 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 5 VQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999998765
No 11
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=97.83 E-value=0.00026 Score=45.33 Aligned_cols=66 Identities=11% Similarity=0.215 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 33 IDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 33 ~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
...++-.+.+..|..++..|+.+..++..-|.+|..+||.++.+++.+...+..+.+.+.+..+..
T Consensus 14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677888999999999999999999999999999999999999999999999999999988744
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=97.81 E-value=0.00011 Score=45.08 Aligned_cols=59 Identities=7% Similarity=0.248 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
++-.+.+..|..++..|+.+..++..-|.+|..+||.++.+++.+...+..+.+.+.+.
T Consensus 5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA 63 (65)
T 1gl2_B 5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA 63 (65)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999999999999998874
No 13
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=97.76 E-value=0.00026 Score=43.67 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
.++-.+.+..|..++..|+.+..++..=|.+|..+||.++.+++.+...+..+.+.+.+.
T Consensus 7 i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 7 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999875
No 14
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=96.89 E-value=0.013 Score=38.04 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHh---hhhhhhhHHHHHHHHH
Q 033318 40 RALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGNDMDA---SRGVLSGTMDKFKMVF 95 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~~~d~---t~~~L~~~~krl~kv~ 95 (122)
+.+..+...|...+. |..+|..=++... -||.|.+.-+. ......++.+++++-.
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~Rge-kL~~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQ-KLSELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555 4555555444443 35555554443 4444555555555443
No 15
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=95.82 E-value=0.0043 Score=47.35 Aligned_cols=63 Identities=11% Similarity=0.213 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.++-.+.+..|..++..|+.+..+|..-|.+|..+||.++.+++.+...+..+...+.+..+-
T Consensus 195 i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~ 257 (267)
T 1dn1_B 195 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 257 (267)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677899999999999999999999999999999999999999999999999999988763
No 16
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.75 E-value=0.0053 Score=41.86 Aligned_cols=41 Identities=17% Similarity=0.288 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhhhh
Q 033318 41 ALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGNDMDASRG 82 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~~~d~t~~ 82 (122)
.+..+...|...+. |..+|. .+-+-.+-||.|.+.-+....
T Consensus 34 ~l~~vq~evdeVk~IM~~NId-kvLeRGEkLd~L~~KTe~L~~ 75 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVD-KVLERDQKLSELDDRADALQA 75 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHH-HHHCCCCSSCCCCSCCSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHH
Confidence 34445555555555 444444 333444457777766555444
No 17
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=93.93 E-value=0.011 Score=45.07 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
++=++.+..|..++..|+.+..+|..-|.+|..+||.++.+++.+...+..+.+.+.+..+
T Consensus 213 ~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~ 273 (279)
T 2xhe_B 213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARH 273 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557789999999999999999999999999999999999999999999999999988765
No 18
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=93.66 E-value=0.031 Score=41.08 Aligned_cols=63 Identities=11% Similarity=0.213 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 35 EHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 35 ~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.++-.+.+..|...+..+..+..+|..-+++|...+|+++.+++.+...+..+...+.+..+.
T Consensus 207 i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~ 269 (279)
T 3c98_B 207 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269 (279)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999999999999999999999887754
No 19
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=92.87 E-value=1.1 Score=28.11 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 39 ERALEGLQDRVNLL---KRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 39 D~~Ld~L~~~v~~L---k~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
++.++.+..+++.. ..+|..+-.++..|...|+..+..++.+..-++.+-+.|..+.
T Consensus 19 ~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 19 DESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 33344444443333 3477788899999999999999999999999999999888764
No 20
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=92.35 E-value=0.29 Score=28.52 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHH
Q 033318 50 NLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK 92 (122)
Q Consensus 50 ~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~ 92 (122)
..-..++..+-.++..|...|+.++..++.....++.+-+.+.
T Consensus 10 ~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 10 IESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3445688888999999999999999999999999999988765
No 21
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=92.25 E-value=0.029 Score=38.11 Aligned_cols=56 Identities=9% Similarity=0.180 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
+.+..|-|+--+.+...+..+-.-+..+ ..|++-.+++........+..+++++-.
T Consensus 36 ~~vq~evdeVk~IM~~NIdkvLeRGEkL--------d~L~~KTe~L~~~S~~F~k~A~kl~rkm 91 (119)
T 2kog_A 36 QQTQAQVDEVVDIMRVNVDKVLERDQKL--------SELDDRADALQAGASQFETSAAKLKRKY 91 (119)
T ss_dssp HHSSHHHHHHHHHHHHHHHHHHCCCCSS--------CCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666777666665544333 2466667777777777777777776554
No 22
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=89.65 E-value=2.5 Score=26.39 Aligned_cols=49 Identities=6% Similarity=0.140 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 49 VNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 49 v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+..-..+|..|-.|+..|-..|......++.+..-+..+.+-++.+.++
T Consensus 28 ~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr 76 (81)
T 2nps_C 28 AVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence 3344458999999999999999999999999999999999999988765
No 23
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=88.48 E-value=2.7 Score=25.14 Aligned_cols=55 Identities=16% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.|..-...+.--..+|..|-.++..|-..|......++.+...|.++.+-++.+.
T Consensus 10 ~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 10 SIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 3344444444556699999999999999999999999999999999998877653
No 24
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=87.33 E-value=3.3 Score=25.79 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTM 88 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~ 88 (122)
.+.++.++.|..++.-+-..-..+++.|-.|...||.|...+.....++....
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567899999999999999999999999999999999998888888776544
No 25
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=83.93 E-value=13 Score=28.53 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=8.9
Q ss_pred hhhhhhhHHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMVF 95 (122)
Q Consensus 80 t~~~L~~~~krl~kv~ 95 (122)
.+.+++..++.+.-+.
T Consensus 271 is~~~N~~mk~LTiit 286 (339)
T 4ev6_A 271 ENIKMNQIMKILTMVT 286 (339)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445666666665543
No 26
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=80.94 E-value=5.6 Score=25.30 Aligned_cols=28 Identities=14% Similarity=0.433 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 59 INEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 59 I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
|-+||+.|..-|++++..+++...+|+.
T Consensus 49 l~~el~~h~~ei~~le~~i~rhk~~i~~ 76 (84)
T 1gmj_A 49 KENEISHHAKEIERLQKEIERHKQSIKK 76 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999888776555543
No 27
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=79.66 E-value=5 Score=25.34 Aligned_cols=38 Identities=11% Similarity=0.146 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHH
Q 033318 55 LSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK 92 (122)
Q Consensus 55 ~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~ 92 (122)
.|..--.++..|...|++++.++|.....++.+-+.+.
T Consensus 42 ~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~ 79 (83)
T 1l4a_C 42 AGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56666778999999999999999999998888766554
No 28
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=76.97 E-value=10 Score=23.08 Aligned_cols=57 Identities=5% Similarity=0.072 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 39 ERALEGLQDRVNLLKR---LSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~---~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
++.++.-...++.... .|..--.++..|...|++++..+|.....++.+-+++..+-
T Consensus 8 ~esl~STrr~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk 67 (70)
T 3b5n_C 8 QSSVASTRNTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELK 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444433 67777789999999999999999999999999999988763
No 29
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=76.44 E-value=13 Score=24.16 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFK 92 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~ 92 (122)
.+-+..+.+|++-...+..+-.+=++-++.=..-.+.....++.....|..+.+-=+
T Consensus 24 ~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk 80 (109)
T 3hd7_B 24 IKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQS 80 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466667777777777666666666666666666677888888888888887765433
No 30
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=71.91 E-value=23 Score=24.84 Aligned_cols=61 Identities=13% Similarity=0.043 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
...+.+..|..-...++.=-.+...|+...++.++.+.+.+...+..++..-.++.++-+-
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~E 125 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKE 125 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355888899999999999999999999999999999999999999999999888888653
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=71.08 E-value=15 Score=22.52 Aligned_cols=66 Identities=15% Similarity=0.234 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 33 IDEHDNERALEG---LQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 33 ~l~~eqD~~Ld~---L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
.+..+-|...+. +...+.....-......||..=++-+-.+.++++.+..++..+..++...-+..
T Consensus 10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455554444 445555555577788999999999999999999999999999999998766544
No 32
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=70.31 E-value=3.9 Score=21.71 Aligned_cols=11 Identities=45% Similarity=0.860 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 033318 110 FVVIFLIVYYL 120 (122)
Q Consensus 110 ~v~lf~il~~l 120 (122)
++++|.++|++
T Consensus 9 ~v~~~~ifYFl 19 (37)
T 2rdd_B 9 LVVFGLIFYFM 19 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444555554
No 33
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=68.27 E-value=4.1 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhHH
Q 033318 57 GDINEEVDTHNRMLERMGNDMD 78 (122)
Q Consensus 57 ~~I~~El~~Qn~lLD~l~~~~d 78 (122)
-.|..|+..|..+|+.|+..+.
T Consensus 6 e~I~~El~kQe~lL~~LH~e~~ 27 (56)
T 2kwh_A 6 AGIKEEIRRQEFLLNSLHRDLQ 27 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999999985
No 34
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=68.04 E-value=39 Score=26.00 Aligned_cols=15 Identities=7% Similarity=0.160 Sum_probs=8.2
Q ss_pred hhhhhhhHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMV 94 (122)
Q Consensus 80 t~~~L~~~~krl~kv 94 (122)
.+.+++..||.+.-+
T Consensus 295 is~~~N~imk~LTii 309 (363)
T 2iub_A 295 VSNKTNEVMKVLTII 309 (363)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666665544
No 35
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=65.75 E-value=22 Score=22.28 Aligned_cols=55 Identities=5% Similarity=0.094 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----------HHhhhhhhhhHHHHHHHHHH
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGND----------MDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~----------~d~t~~~L~~~~krl~kv~~ 96 (122)
.+.|...+..+...+..|.++|++=...++.|... |.......+.+.++|...+.
T Consensus 13 ~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~ 77 (103)
T 4i0x_B 13 LDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLS 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777777666 66666666666666666554
No 36
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=65.68 E-value=22 Score=22.34 Aligned_cols=56 Identities=11% Similarity=0.186 Sum_probs=36.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTM 88 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~ 88 (122)
+.+.+|-|+--+.+.+.+..+-.-+..+. ++.+...-|..-...|.+...++++.+
T Consensus 8 ~~vq~ev~evk~iM~~NI~kvL~RgekL~-~L~~kt~~L~~~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 8 QQTQAQVDEVVDIMRVNVDKVLERDQKLS-ELDDRADALQAGASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666667777777666666664 344445556667777888877777753
No 37
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=65.51 E-value=17 Score=23.29 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHhh
Q 033318 38 NERALEGLQDRVNLLKR-LSGDINEEVDTHNRMLERMGNDMDAS 80 (122)
Q Consensus 38 qD~~Ld~L~~~v~~Lk~-~a~~I~~El~~Qn~lLD~l~~~~d~t 80 (122)
.|..|.+|.++|..+|- ++..|++.+..++. |-+|++.+..+
T Consensus 31 ~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~-L~~mn~Kls~a 73 (91)
T 2pjw_V 31 EDSKLQNLAQRVFASKARLNYALNDKAQKYNT-LIEMNGKISEI 73 (91)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 45778899999999997 99999999999995 55566665554
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=65.45 E-value=36 Score=24.60 Aligned_cols=53 Identities=21% Similarity=0.097 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhh
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVL 84 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L 84 (122)
..++.|.+..|+.+....+.|+.-...+..|++.-..-++........+.+.|
T Consensus 41 rELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~L 93 (189)
T 2v71_A 41 RELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVL 93 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998776555555544443333333
No 39
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=61.39 E-value=13 Score=18.94 Aligned_cols=20 Identities=15% Similarity=0.482 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033318 103 MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~k 122 (122)
+|.=+.++++..+++|+++|
T Consensus 8 Lf~NFt~vLI~vlLi~llVr 27 (31)
T 1jdm_A 8 LFLNFTIVLITVILMWLLVR 27 (31)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555666676654
No 40
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.00 E-value=38 Score=24.92 Aligned_cols=55 Identities=7% Similarity=0.097 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 39 ERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 39 D~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
-..++.|...+..++.-...+..++++-..-+..++.+++.+..++.+..+++..
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~ 85 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSE 85 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677777777888888888888888888888888888888888888888754
No 41
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=56.83 E-value=38 Score=22.23 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRML 70 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lL 70 (122)
+|||..|..|...+..+|..-...-+--++|+.++
T Consensus 69 ~en~~~L~QIQ~ei~s~rd~hkR~~E~QkEQ~SL~ 103 (115)
T 1ezj_A 69 DENKQLLKQIQESVESFRDIYKRFSEYQKEQNSLL 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45666666677777666665555555555555554
No 42
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=56.47 E-value=49 Score=23.26 Aligned_cols=60 Identities=15% Similarity=0.222 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHH
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDK 90 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~kr 90 (122)
...+++-.+=....|++-+-.+..+|.++.+=++.|..-++.|+..+...+..+.-=..|
T Consensus 45 ~~aleeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~EK 104 (159)
T 3p8c_F 45 QRALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEK 104 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666667889999999999999999999999999999999999888776543333
No 43
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=56.41 E-value=26 Score=20.11 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 033318 43 EGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDAS 80 (122)
Q Consensus 43 d~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t 80 (122)
|.|...|..||.=...+..|+++-...|..++......
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~m 43 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNM 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhH
Confidence 56777888899888899999999888888888765543
No 44
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.29 E-value=38 Score=21.64 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
..+.+...+.....-+.....||..-++-+-.+.+++|.+...|..+..++..--+
T Consensus 24 rae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 24 RAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446667777777888899999998888999999999999999988888775543
No 45
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=55.05 E-value=26 Score=20.65 Aligned_cols=17 Identities=12% Similarity=0.032 Sum_probs=8.8
Q ss_pred hhhhhhhHHHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 80 t~~~L~~~~krl~kv~~ 96 (122)
...=++.+...++|+..
T Consensus 4 ~~~f~~~v~~ElkKV~W 20 (65)
T 3din_D 4 LRKFFREVIAEAKKISW 20 (65)
T ss_dssp ------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccC
Confidence 33445677788888885
No 46
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=50.67 E-value=36 Score=20.03 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 33 IDEHDNERALEGLQDRVNL----LKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 33 ~l~~eqD~~Ld~L~~~v~~----Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
.+-...+...+.|...+.. +..++.++..-+..=...++.+..........+..+..++..+..
T Consensus 41 ~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 108 (115)
T 3zrx_A 41 ILAKSIERLRRSLKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIE 108 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666 333444444444333444555544444444555555556655543
No 47
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=47.28 E-value=50 Score=21.49 Aligned_cols=51 Identities=10% Similarity=0.285 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 46 QDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 46 ~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
..++..+|.-+.+ .-+|..|...|++-..-+-.+..+|..+..+|..++..
T Consensus 34 ~~riek~k~e~~D-ey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~ 84 (108)
T 1h7c_A 34 EEKIEKMRAEDGE-NYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILEN 84 (108)
T ss_dssp HHHHHHHHHHHCS-CTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 3444555554444 23799999999999999999999999999999999973
No 48
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=47.24 E-value=52 Score=20.85 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
.+.+...+.....-+....+|+..-++-+-.+.++++.+...+..+..++..--
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666677777777888888888888888888888888888888887776543
No 49
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=45.92 E-value=49 Score=20.15 Aligned_cols=28 Identities=14% Similarity=0.311 Sum_probs=13.1
Q ss_pred HHHHHHHhhhhhHHhhh---hhhhhHHHHHH
Q 033318 65 THNRMLERMGNDMDASR---GVLSGTMDKFK 92 (122)
Q Consensus 65 ~Qn~lLD~l~~~~d~t~---~~L~~~~krl~ 92 (122)
+-..-||.|.+.-+... ....+..++++
T Consensus 40 eRGekLd~L~~kt~~L~~~s~~F~k~A~~l~ 70 (80)
T 1l4a_A 40 ERDSKISELDDRADALQAGASQFEASAGKLK 70 (80)
T ss_dssp HHHHHHHHHHHHHHTTTTTSTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555544433 34444444443
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.88 E-value=1.2e+02 Score=24.32 Aligned_cols=44 Identities=16% Similarity=0.094 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 54 RLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 54 ~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.....+..|++.-...++........+...+....++++++.+.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455555555555555555666666666653
No 51
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=44.22 E-value=44 Score=19.11 Aligned_cols=18 Identities=0% Similarity=0.030 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKR 54 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~ 54 (122)
+....++.|..+|..|+.
T Consensus 8 ~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 8 QASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555555544
No 52
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.53 E-value=1.4e+02 Score=24.40 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 033318 40 RALEGLQDRVNLLKR 54 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~ 54 (122)
..|+.|...|..|.+
T Consensus 100 ~~LqeLe~~l~~lsn 114 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSD 114 (464)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhh
Confidence 445555555555544
No 53
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=41.07 E-value=18 Score=27.39 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=14.2
Q ss_pred chhHHHHHHHHHHHHHHHHh
Q 033318 102 RMFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 102 ~~~~iv~l~v~lf~il~~l~ 121 (122)
+||++.+++.++|.++|+++
T Consensus 56 ~ww~~~f~~~iv~~~~y~~~ 75 (311)
T 3mk7_C 56 RWWFLLFIGTLVFGILYLVL 75 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 47777777777777777763
No 54
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=40.50 E-value=62 Score=19.78 Aligned_cols=46 Identities=9% Similarity=0.185 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 49 VNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 49 v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
|..|+..-..=.+|+..+...+++++...+.-...+..-...+.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555545555566666666666666666555555554444443
No 55
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=38.30 E-value=1.4e+02 Score=23.35 Aligned_cols=60 Identities=5% Similarity=0.055 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
++.+...+.+..-......-...+..|-+.+.+.+++++...+.+...++.+..+-..+.
T Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 424 VEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 333333334444444444444445555556666777777777777777777766655544
No 56
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=38.20 E-value=29 Score=20.46 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHH
Q 033318 82 GVLSGTMDKFKMVFE 96 (122)
Q Consensus 82 ~~L~~~~krl~kv~~ 96 (122)
.=++.+...++|+..
T Consensus 6 ~f~~~v~~ElkKV~W 20 (65)
T 3dl8_C 6 EFLKGVRDELKRVVW 20 (65)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHhcccC
Confidence 345566677777775
No 57
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=37.84 E-value=82 Score=20.41 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 46 QDRVNLLKRLSG-DINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 46 ~~~v~~Lk~~a~-~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
..++..+|.-+. + .-+|..|...|++-..-+-.+..+|..+..+|..++..
T Consensus 31 ~~riek~k~~~~~d-ey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~~ 82 (106)
T 1qsd_A 31 EAHVAKLKEDKSVD-PYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFLKT 82 (106)
T ss_dssp HHHHHHHHHCTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344444555443 3 35789999999999999999999999999999999963
No 58
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=37.59 E-value=34 Score=24.41 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=51.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+.+..=.|+.|+.++-+.+.=|.+...| +++.++...+-.++.++-.-...|..+...++.++.+
T Consensus 32 e~~~~LTdedL~~~GVT~GARrKIL~aI-q~Lrer~~~l~~le~~~~~g~~~l~~~l~el~~i~~t 96 (173)
T 1oxj_A 32 EEMLLITEDFLQSVGVTKGASHKLALCI-DKLKERANILNRVEQELLSGQMELSTAVEELTNIVLT 96 (173)
T ss_dssp HHHTTCCHHHHHHTTCCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTTS
T ss_pred HHHHhcCHHHHHHCCCchHHHHHHHHHH-HHHHHHhhHHHHHHHHhhccchHHHHHHHHHHHHHhC
Confidence 3444556677777776667777788877 5888888999999999998767899999999999874
No 59
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.58 E-value=70 Score=19.56 Aligned_cols=39 Identities=8% Similarity=0.235 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 58 DINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 58 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
++-.-+..|...|++|+..+..-+..+..-.+++..+.+
T Consensus 18 ~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~ 56 (78)
T 3efg_A 18 ELETRLSFQEQALTELSEALADARLTGARNAELIRHLLE 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777666666666666666666654
No 60
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=37.00 E-value=22 Score=18.72 Aligned_cols=12 Identities=25% Similarity=0.661 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHh
Q 033318 61 EEVDTHNRMLER 72 (122)
Q Consensus 61 ~El~~Qn~lLD~ 72 (122)
+|++.||.+|+.
T Consensus 17 ddlkrQN~~Le~ 28 (34)
T 1a93_B 17 DDLKRQNALLEQ 28 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 467778877764
No 61
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=36.17 E-value=63 Score=19.59 Aligned_cols=55 Identities=2% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hHHhhhhhhhhHHHHHHHHHH
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGN--------DMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~--------~~d~t~~~L~~~~krl~kv~~ 96 (122)
.+.|...+..++..+..|..++++=...+..|.. .|.....+.+.+..+|...+.
T Consensus 8 ~~~~~~~a~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~ 70 (96)
T 3h6p_C 8 YPAMMAHAGDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQ 70 (96)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777776666666666642 355555666666666665554
No 62
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=35.84 E-value=6.8 Score=25.92 Aligned_cols=25 Identities=8% Similarity=0.384 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHh
Q 033318 52 LKRLSGDINEEVDTHNRMLERMGNDMDA 79 (122)
Q Consensus 52 Lk~~a~~I~~El~~Qn~lLD~l~~~~d~ 79 (122)
++.+|...+-..+ .+++..+.....
T Consensus 54 l~~ia~~L~v~~~---~l~~~~~~~~~~ 78 (130)
T 3fym_A 54 IRKYASVVNIEPN---QLIQAHQDEIPS 78 (130)
T ss_dssp HHHHHHHTTCCHH---HHHHHTTTTSCC
T ss_pred HHHHHHHhCCCHH---HHHHHHHHhCCC
Confidence 5556665554332 244444444433
No 63
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=34.85 E-value=84 Score=20.99 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLE 71 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD 71 (122)
.+..|..+|..|+..-..+...+..|+.++.
T Consensus 17 ~~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~ 47 (182)
T 3kqg_A 17 KASALNTKIRALQGSLENMSKLLKRQNDILQ 47 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5556666666666665566666666665554
No 64
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=33.10 E-value=1.8e+02 Score=22.99 Aligned_cols=58 Identities=7% Similarity=0.100 Sum_probs=46.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 033318 30 SHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGT 87 (122)
Q Consensus 30 ~~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~ 87 (122)
..+.+.++=+...+.+...-..|..+-.+++.+|+.+-.-++.+-..+...+..|..+
T Consensus 65 ~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 65 ARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777778888888888888888888888888888888888888877777777543
No 65
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=32.91 E-value=82 Score=18.94 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033318 45 LQDRVNLLKRLSGDINEEVDTHNRMLERM 73 (122)
Q Consensus 45 L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l 73 (122)
|......+++.+.+|.+++..=...++.|
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l 41 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVI 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 66
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.30 E-value=81 Score=20.82 Aligned_cols=65 Identities=9% Similarity=0.108 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
+.+-+.-...|-.|...|..|+.+-..+|.-=+ -..+=+.++.-...+...++.+...++++-.-
T Consensus 13 ~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kD-t~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~ 77 (130)
T 2dnx_A 13 SSIIQTCSGNIQRISQATAQIKNLMSQLGTKQD-SSKLQENLQQLQHSTNQLAKETNELLKELGSL 77 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677778888888889999988888887433 23366778888888888888888888887763
No 67
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=31.08 E-value=1.7e+02 Score=22.09 Aligned_cols=58 Identities=12% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
+-.+.+..+...+..+......|..-.++|..-.+++...++........+...+..+
T Consensus 224 ~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 281 (341)
T 3zx6_A 224 SAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEES 281 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666667777777777777777777777777666666655555444444433
No 68
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=30.80 E-value=43 Score=17.27 Aligned_cols=14 Identities=50% Similarity=0.707 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHhC
Q 033318 109 SFVVIFLIVYYLTR 122 (122)
Q Consensus 109 l~v~lf~il~~l~k 122 (122)
.++++.+.+||+.|
T Consensus 19 ~t~~i~~~vy~~~r 32 (33)
T 2l34_A 19 LTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhheec
Confidence 33444555566544
No 69
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=30.67 E-value=88 Score=18.62 Aligned_cols=54 Identities=9% Similarity=0.214 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhHHhhhhhhhhHHHHHHHHHH
Q 033318 43 EGLQDRVNLLKRLSGDINEEVDTHNRMLERMG--------NDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 43 d~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~--------~~~d~t~~~L~~~~krl~kv~~ 96 (122)
+.|...+..++..+..|..++++=...++.|. ..|.......+.+..+|..++.
T Consensus 8 ~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~ 69 (94)
T 3fav_B 8 AGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQ 69 (94)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666664 2345555555555555555543
No 70
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=30.48 E-value=1.5e+02 Score=21.27 Aligned_cols=58 Identities=12% Similarity=0.214 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMV 94 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv 94 (122)
+-.+.++.+...+..+......|....++|..-.+++...++........+...+..+
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 201 (227)
T 1qu7_A 144 SAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEQS 201 (227)
T ss_dssp HHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777777777777777777777777766655555444444433
No 71
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=29.55 E-value=1.1e+02 Score=19.38 Aligned_cols=55 Identities=22% Similarity=0.185 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 32 EIDEHDNERALEGLQDRVNLLK---------RLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk---------~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
+.+|++-......|..++.++. ..-..|...+++=..+|+.|+-.+.++....+.
T Consensus 18 e~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~ 81 (102)
T 2qyw_A 18 EKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRN 81 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 5567777778888888887773 455678888999999999999998887655544
No 72
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=29.18 E-value=1.3e+02 Score=20.53 Aligned_cols=59 Identities=17% Similarity=0.341 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHN---RMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn---~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
+-...|+.|...|..|+..-..+-....... .-|+.+...+......++...+.|.+..
T Consensus 47 ~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 47 EIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544333222222211 2344444444444444555555555443
No 73
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis thaliana}
Probab=28.93 E-value=1.3e+02 Score=19.86 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 47 DRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 47 ~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.++..+|.-+.+ .-+|..|...|++-..-+-.+..+|..+...|..++..
T Consensus 36 ~kiekmk~e~~d-ey~iKkq~evL~Et~~mipd~~~RL~~a~~~L~~~l~~ 85 (116)
T 3mxz_A 36 AKTADMKDKGAD-PYDLKQQENVLGESRMMIPDCHKRLESALADLKSTLAE 85 (116)
T ss_dssp HHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 344455543333 35788999999999999999999999999999999874
No 74
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=28.93 E-value=84 Score=20.69 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGDINEEVDTHNRML 70 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lL 70 (122)
+--.+||.|+..+..|.+++.++..-++.=|+.|
T Consensus 73 ni~~elD~LEa~A~~l~~~~~elq~~idn~n~tl 106 (109)
T 2ieq_A 73 NLSSELKQLEAKTASLFQTTVELQGLIDQINSTY 106 (109)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4456788899999999999888877666655544
No 75
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.90 E-value=99 Score=18.67 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 033318 43 EGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKM 93 (122)
Q Consensus 43 d~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~k 93 (122)
+.|-.+++.|+.=.-+-.+.++.-+.-+.+.+........-+....+|+..
T Consensus 2 ~~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~ 52 (81)
T 1ic2_A 2 DAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKG 52 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345566666666555555555555555555555554444444444444443
No 76
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=28.19 E-value=36 Score=17.29 Aligned_cols=12 Identities=0% Similarity=0.047 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHH
Q 033318 103 MFTLVASFVVIF 114 (122)
Q Consensus 103 ~~~iv~l~v~lf 114 (122)
-|+++++++++|
T Consensus 7 ~~wlai~c~LLf 18 (30)
T 1z65_A 7 TWWVAILCMLLA 18 (30)
T ss_dssp SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 455555555444
No 77
>2cly_C ATP synthase coupling factor 6, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.45.1.1 PDB: 1vzs_A 2wss_V*
Probab=28.04 E-value=48 Score=20.55 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=19.8
Q ss_pred cccccccccccCCccCCCccCCCccchhhHHHHHHHHHHHHHHH
Q 033318 5 RDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDR 48 (122)
Q Consensus 5 ~~~~~~r~~l~~g~~~~g~~~~~~~~~~~l~~eqD~~Ld~L~~~ 48 (122)
|.|++..++. || -+..+ -.++++-++.|+.|+..
T Consensus 17 REYk~Ks~~~-G~-----lVD~~----Pe~~kel~~el~kL~~~ 50 (77)
T 2cly_C 17 REYRTKRQTS-GG-----PVDAG----PEYQQDLDRELFKLKQM 50 (77)
T ss_dssp HHHHHHHTCC-SS-----SSSCC----THHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccC-CC-----CCCCC----HHHHHHHHHHHHHHHHH
Confidence 7787766533 32 22233 35677777777777654
No 78
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=27.34 E-value=2.5e+02 Score=22.89 Aligned_cols=26 Identities=4% Similarity=0.008 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINE 61 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~ 61 (122)
++.+..|+.|+.+.+..++.-..|.+
T Consensus 98 ~~Le~~l~~isn~Ts~a~~~v~~ik~ 123 (461)
T 3ghg_B 98 DELNNNVEAVSQTSSSSFQYMYLLKD 123 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444554444444444444443
No 79
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=27.00 E-value=78 Score=19.31 Aligned_cols=25 Identities=12% Similarity=0.174 Sum_probs=10.9
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 74 GNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 74 ~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
++++++..+.++.-.+.-.++++..
T Consensus 2 ~~~~~~~~e~~~~f~kd~~rvlk~~ 26 (74)
T 1rh5_B 2 KTDFNQKIEQLKEFIEECRRVWLVL 26 (74)
T ss_dssp ----------CCHHHHHHHHHHHSE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777777888754
No 80
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=26.74 E-value=1.2e+02 Score=19.09 Aligned_cols=53 Identities=11% Similarity=0.248 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 34 DEHDNERALEGLQDRVNLLK--------RLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 34 l~~eqD~~Ld~L~~~v~~Lk--------~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
+|++-......|..++.++. ..-..|...+++=..+|+.|+-.+-.+....+.
T Consensus 10 YE~df~~l~~~i~~kl~~i~~~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~ 70 (102)
T 1vcs_A 10 YEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRG 70 (102)
T ss_dssp SHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHH
Confidence 45666666666666666654 356678889999999999999988877644443
No 81
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=26.46 E-value=52 Score=17.47 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 033318 106 LVASFVVIFL 115 (122)
Q Consensus 106 iv~l~v~lf~ 115 (122)
+|..++++|+
T Consensus 12 ~i~gl~vif~ 21 (40)
T 2l9u_A 12 VIAGLVVIFM 21 (40)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 82
>1qoy_A Hemolysin E; toxin, membrane pore former, cytolysin, pores; 2.0A {Escherichia coli} SCOP: h.4.4.1 PDB: 2wcd_A
Probab=24.38 E-value=2.5e+02 Score=21.80 Aligned_cols=60 Identities=5% Similarity=-0.022 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh----hHHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS----GTMDKFKMVFE 96 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~----~~~krl~kv~~ 96 (122)
---|+.++.+...+..|.++-...+.|++.+-+ +.+|+..+|.....+- .+.+++.++-.
T Consensus 19 ~~~~~~~e~vk~al~Sls~iv~kY~~elD~kvk-f~~LQ~aId~ID~~MlgY~G~AK~~LD~lRs 82 (318)
T 1qoy_A 19 IVADKTVEVVKNAIETADGALDLYNKYLDQVIP-WQTFDETIKELSRFKQEYSQAASVLVGDIKT 82 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSC-HHHHHHHHHHTTTTGGGSCHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHhhhcCCcHHHHhhHHHHH
Confidence 344778999999999999999999999999865 5666666665555442 35556665544
No 83
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=24.25 E-value=1.4e+02 Score=18.87 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033318 37 DNERALEGLQDRVNLLKRLSGD 58 (122)
Q Consensus 37 eqD~~Ld~L~~~v~~Lk~~a~~ 58 (122)
+-...|+.|...|..|+..=..
T Consensus 16 ~I~~~i~~i~~~v~~l~~~~~~ 37 (127)
T 1ez3_A 16 EIRGFIDKIAENVEEVKRKHSA 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544333
No 84
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=23.68 E-value=42 Score=25.22 Aligned_cols=17 Identities=6% Similarity=0.067 Sum_probs=10.7
Q ss_pred hhhhhhhHHHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 80 t~~~L~~~~krl~kv~~ 96 (122)
+-.......+.+..++.
T Consensus 179 tpa~~~q~a~Dvv~FL~ 195 (248)
T 3cx5_D 179 TPATTSQMAKDVTTFLN 195 (248)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHH
Confidence 55556666666666665
No 85
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=23.51 E-value=1.6e+02 Score=19.17 Aligned_cols=46 Identities=13% Similarity=0.175 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318 40 RALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 40 ~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 85 (122)
+.|+.+...+..++.-..+=..|++.+....+.+...++.....|+
T Consensus 37 D~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 37 DMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666667777777777777777777776655543
No 86
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=23.50 E-value=2.6e+02 Score=21.59 Aligned_cols=50 Identities=10% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 033318 36 HDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLS 85 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~ 85 (122)
+..-+++..++..|......-..+...++.+...|++|...+......+.
T Consensus 8 ~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 8 QKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 87
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=23.11 E-value=2.4e+02 Score=21.21 Aligned_cols=50 Identities=8% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHH
Q 033318 41 ALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDK 90 (122)
Q Consensus 41 ~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~kr 90 (122)
..+.|......+...+..+...+.+|..-++++...++.....+......
T Consensus 60 ~~~~l~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~~~el~~~~~~~~~~ 109 (341)
T 3zx6_A 60 GANAIYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAEN 109 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555566666666666666666665555554444333
No 88
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=22.93 E-value=2.2e+02 Score=20.53 Aligned_cols=49 Identities=16% Similarity=0.287 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDAS 80 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t 80 (122)
+.+.+.-++.++.|..++..|+.-=..|..|+..-+.+=+++...+..+
T Consensus 11 ~~i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~ 59 (190)
T 3thf_A 11 NLIKQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEK 59 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4567888999999999999999999999999998887777766655443
No 89
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.73 E-value=77 Score=15.30 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033318 45 LQDRVNLLKRLSGDINEEVDT 65 (122)
Q Consensus 45 L~~~v~~Lk~~a~~I~~El~~ 65 (122)
|.+-|..||.-..++.+|+.+
T Consensus 5 lkdevgelkgevralkdevkd 25 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhc
Confidence 334445555555555566543
No 90
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=22.67 E-value=3.3e+02 Score=22.60 Aligned_cols=64 Identities=8% Similarity=0.182 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKRLSG-DINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~~a~-~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~ 96 (122)
...+.-|+.-++..+..+..++.... ....|..++|. ++.|+..+++...-++.-.++|.++.+
T Consensus 110 ~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q-~~~LekAl~s~~~i~~~e~~~l~~L~~ 174 (526)
T 3iyk_A 110 LVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQ-FDILNKAVTSYNKILTEEDLQMRRLAT 174 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33444555566667777777777554 33444444443 555777777777777776666666654
No 91
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=22.57 E-value=2.2e+02 Score=20.44 Aligned_cols=45 Identities=11% Similarity=0.245 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhh
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSG 86 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~ 86 (122)
.+.+...+..+...+..+.+++..-..-++++...+..+...+..
T Consensus 27 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (213)
T 3g67_A 27 SDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEASSQIGE 71 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555555555555544444433
No 92
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=22.14 E-value=47 Score=25.20 Aligned_cols=17 Identities=0% Similarity=0.016 Sum_probs=9.8
Q ss_pred hhhhhhhHHHHHHHHHH
Q 033318 80 SRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 80 t~~~L~~~~krl~kv~~ 96 (122)
+-..+....+.+..++.
T Consensus 201 tpat~~q~a~DVvaFL~ 217 (263)
T 2yiu_B 201 TPATVDQMATDVAAFLM 217 (263)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CccchhHHHHHHHHHHH
Confidence 44455555666666664
No 93
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=21.95 E-value=1.3e+02 Score=17.66 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 033318 49 VNLLKRLSGDINEEVD 64 (122)
Q Consensus 49 v~~Lk~~a~~I~~El~ 64 (122)
..+++..+..|.+.++
T Consensus 15 A~~~~~~~~~l~~~l~ 30 (97)
T 2vs0_A 15 SQSYGQGSDQIRQILS 30 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 94
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.54 E-value=2e+02 Score=19.58 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 033318 36 HDNERALEGLQDRVNLLKRLSGD 58 (122)
Q Consensus 36 ~eqD~~Ld~L~~~v~~Lk~~a~~ 58 (122)
++-...+..|...+..|+.+-..
T Consensus 12 ~~i~~~i~~i~~~v~~L~~l~~~ 34 (196)
T 1fio_A 12 SQINRDLDKYDHTINQVDSLHKR 34 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666655444
No 95
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.10 E-value=3.2e+02 Score=21.76 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 033318 65 THNRMLERMGNDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 65 ~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~ 95 (122)
+.+..++.+....+.....+....+++..+-
T Consensus 534 ~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 534 AKQKETEDLEQENIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhhHHhhhHHHHHHHhhhhhHHHHHH
Confidence 3334444444455555554444444444433
No 96
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.00 E-value=1.5e+02 Score=17.91 Aligned_cols=52 Identities=6% Similarity=0.077 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhHHhhhhhhhhHHHHHHHHH
Q 033318 44 GLQDRVNLLKRLSGDINEEVDTHNRMLERMG--------NDMDASRGVLSGTMDKFKMVF 95 (122)
Q Consensus 44 ~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~--------~~~d~t~~~L~~~~krl~kv~ 95 (122)
.|.....++...+..|.++|+.=...++.|. ..|..+....+...++|...+
T Consensus 4 el~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L 63 (94)
T 4i0x_A 4 EVGALSKFAASLADQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNAL 63 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555444444442 234444444444444444443
No 97
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=20.84 E-value=1.6e+02 Score=18.17 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 38 NERALEGLQDRVNLLKRLSGDINEEVD 64 (122)
Q Consensus 38 qD~~Ld~L~~~v~~Lk~~a~~I~~El~ 64 (122)
-+..+|.|.+++...|.--..|.+|++
T Consensus 42 ~EKTIDDLEDkL~~eKEK~k~i~eeLD 68 (77)
T 3mtu_E 42 FVSEYNDLEEKVAHAKEENLNMHQMLD 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456778888888777777777777765
No 98
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=20.24 E-value=2.3e+02 Score=19.89 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033318 44 GLQDRVNLLKRLSGDINEEVDTHNRMLE 71 (122)
Q Consensus 44 ~L~~~v~~Lk~~a~~I~~El~~Qn~lLD 71 (122)
-|.+.|..+-..+..|+.+|.+|-.+..
T Consensus 8 ~i~~~l~~~~~~s~~iGg~v~~~a~~v~ 35 (176)
T 1s0p_A 8 LVDQHITPFVALSKKLAPEVGNQVEQLV 35 (176)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCHHHHHHHHHHH
Confidence 4788888999999999999999887654
No 99
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=20.15 E-value=82 Score=20.25 Aligned_cols=14 Identities=14% Similarity=0.422 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhC
Q 033318 109 SFVVIFLIVYYLTR 122 (122)
Q Consensus 109 l~v~lf~il~~l~k 122 (122)
+++++.++.||+++
T Consensus 171 ~~~~~~~~~~~~vr 184 (186)
T 2kse_A 171 ALPIMLIIMMVLLG 184 (186)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 33344555666653
Done!