Query 033318
Match_columns 122
No_of_seqs 106 out of 831
Neff 6.7
Searched_HMMs 13730
Date Mon Mar 25 20:46:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033318.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033318hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1wa8b1 a.25.3.1 (B:602-695) E 66.5 9.5 0.00069 22.1 8.1 55 42-96 7-69 (94)
2 d1wa8a1 a.25.3.1 (A:1-99) ESAT 54.5 16 0.0012 21.0 8.1 54 43-96 8-69 (99)
3 d1h7ca_ a.7.5.1 (A:) Tubulin c 44.8 27 0.002 21.1 5.4 54 44-98 29-82 (103)
4 d2axti1 f.23.37.1 (I:1-35) Pho 39.2 15 0.0011 18.0 2.8 7 110-116 10-16 (35)
5 d1ykhb1 a.252.1.1 (B:2-130) RN 29.1 61 0.0044 20.1 7.6 67 31-97 51-120 (129)
6 d2iuba2 f.17.3.1 (A:286-349) M 26.0 22 0.0016 19.2 2.3 19 103-121 42-60 (64)
7 d1ppjd2 f.23.11.1 (D:196-241) 21.1 32 0.0023 17.8 2.2 8 112-119 19-26 (46)
8 d1s0pa_ a.192.1.1 (A:) N-termi 20.9 60 0.0044 21.3 4.2 30 44-73 8-37 (176)
9 d1vcsa1 a.47.2.1 (A:8-96) Vesi 19.6 80 0.0058 18.1 6.2 58 32-89 1-66 (89)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 18.9 32 0.0024 20.5 2.3 20 103-122 40-59 (107)
No 1
>d1wa8b1 a.25.3.1 (B:602-695) ESAT-6, EsxA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=66.48 E-value=9.5 Score=22.14 Aligned_cols=55 Identities=9% Similarity=0.222 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhHHhhhhhhhhHHHHHHHHHH
Q 033318 42 LEGLQDRVNLLKRLSGDINEEVDTHNRMLERMG--------NDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 42 Ld~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~--------~~~d~t~~~L~~~~krl~kv~~ 96 (122)
...|...+..++..+..|..++++-...++.|. ..|.....+-+.+..+|..++.
T Consensus 7 ~~~l~~~a~~i~~~~~~i~~~l~~L~~~~~~l~~~W~G~A~~af~~~~~~W~~~~~~l~~~L~ 69 (94)
T d1wa8b1 7 FAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQ 69 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888889999999999999999999998884 4577777777777777777765
No 2
>d1wa8a1 a.25.3.1 (A:1-99) ESAT-6 like protein EsxB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=54.49 E-value=16 Score=20.99 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhHHhhhhhhhhHHHHHHHHHH
Q 033318 43 EGLQDRVNLLKRLSGDINEEVDTHNRMLERMG--------NDMDASRGVLSGTMDKFKMVFE 96 (122)
Q Consensus 43 d~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~--------~~~d~t~~~L~~~~krl~kv~~ 96 (122)
+.|......++..+.+|.+.+..=...++.|. ..|............+|...+.
T Consensus 8 ~~l~~~A~~~~~~~~~l~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~ 69 (99)
T d1wa8a1 8 ATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELD 69 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777773 4555556666666666655554
No 3
>d1h7ca_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Human (Homo sapiens) [TaxId: 9606]}
Probab=44.79 E-value=27 Score=21.11 Aligned_cols=54 Identities=9% Similarity=0.261 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHhc
Q 033318 44 GLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETK 98 (122)
Q Consensus 44 ~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~~ 98 (122)
.-..++..+|.-+.+ --+|..|..+|.+-..-+-....+|..+...|..++...
T Consensus 29 ~q~~k~ek~k~~~~d-ey~iKkq~~vl~Es~~mipd~~~Rl~~a~~~L~~~l~~e 82 (103)
T d1h7ca_ 29 QQEEKIEKMRAEDGE-NYDIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILENE 82 (103)
T ss_dssp HHHHHHHHHHHHHCS-CTHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHC
Confidence 334455555544332 227999999999999999999999999999999998753
No 4
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=39.16 E-value=15 Score=18.02 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 033318 110 FVVIFLI 116 (122)
Q Consensus 110 ~v~lf~i 116 (122)
++++||+
T Consensus 10 ~vV~fFv 16 (35)
T d2axti1 10 IVVTFFV 16 (35)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3333333
No 5
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.11 E-value=61 Score=20.06 Aligned_cols=67 Identities=6% Similarity=0.077 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHh
Q 033318 31 HEIDEHDNERALEGLQDRVNLLKRLSGDI---NEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFET 97 (122)
Q Consensus 31 ~~~l~~eqD~~Ld~L~~~v~~Lk~~a~~I---~~El~~Qn~lLD~l~~~~d~t~~~L~~~~krl~kv~~~ 97 (122)
.+.++..+++.--.|..+.+.+-.+-..+ +.--+.|.+.|.+|+.....+...+..+.++-+.+++.
T Consensus 51 ~e~f~~~~~elA~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~~el~~~v~e~e~ll~~ 120 (129)
T d1ykhb1 51 PEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666666666655554443 23346789999999999999999999999988888763
No 6
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=25.96 E-value=22 Score=19.21 Aligned_cols=19 Identities=21% Similarity=0.132 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033318 103 MFTLVASFVVIFLIVYYLT 121 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~ 121 (122)
+++++.+.+++.+++|+..
T Consensus 42 ~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 42 YPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=21.08 E-value=32 Score=17.82 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 033318 112 VIFLIVYY 119 (122)
Q Consensus 112 ~lf~il~~ 119 (122)
+++.++||
T Consensus 19 ~l~~l~yy 26 (46)
T d1ppjd2 19 LLLPLVYA 26 (46)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334443
No 8
>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase associated protein, CAP {Dictyostelium discoideum [TaxId: 44689]}
Probab=20.85 E-value=60 Score=21.30 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033318 44 GLQDRVNLLKRLSGDINEEVDTHNRMLERM 73 (122)
Q Consensus 44 ~L~~~v~~Lk~~a~~I~~El~~Qn~lLD~l 73 (122)
-|.+.|...-..+..|+.+|.+|..++.+.
T Consensus 8 ~i~~~v~~~~~~s~~Igg~V~~~a~~v~~a 37 (176)
T d1s0pa_ 8 LVDQHITPFVALSKKLAPEVGNQVEQLVKA 37 (176)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 477889999999999999999998877653
No 9
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.65 E-value=80 Score=18.09 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHH
Q 033318 32 EIDEHDNERALEGLQDRVNLLKR--------LSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMD 89 (122)
Q Consensus 32 ~~l~~eqD~~Ld~L~~~v~~Lk~--------~a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~~~k 89 (122)
+.+|++--.....|..++.++.. .-.+|...+++=..+|+.|+-.+-+.-...+..+.
T Consensus 1 E~YE~~y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~ 66 (89)
T d1vcsa1 1 EGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYS 66 (89)
T ss_dssp CCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHH
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=18.92 E-value=32 Score=20.47 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033318 103 MFTLVASFVVIFLIVYYLTR 122 (122)
Q Consensus 103 ~~~iv~l~v~lf~il~~l~k 122 (122)
+.++++++++..+++|.++|
T Consensus 40 ~i~~~I~~~V~~~~~~~~~~ 59 (107)
T d3ehbb2 40 YIITAVTIFVCLLLLICIVR 59 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Done!