Query 033319
Match_columns 122
No_of_seqs 104 out of 186
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 20:47:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1afo_A Glycophorin A; integral 42.3 13 0.00045 21.1 1.7 15 41-55 12-26 (40)
2 2l2t_A Receptor tyrosine-prote 36.0 23 0.0008 20.4 2.1 13 42-54 10-22 (44)
3 4ev6_A Magnesium transport pro 26.3 2E+02 0.007 22.0 6.8 32 45-76 291-330 (339)
4 2ks1_B Epidermal growth factor 26.2 16 0.00054 21.1 0.2 12 43-54 12-23 (44)
5 2knc_B Integrin beta-3; transm 21.1 1.5E+02 0.0053 18.6 4.3 12 42-53 11-22 (79)
6 3e1r_A Centrosomal protein of 20.6 1.3E+02 0.0046 18.2 3.6 36 21-56 12-47 (58)
7 2k9j_B Integrin beta-3; transm 20.1 64 0.0022 18.1 2.0 13 41-53 9-21 (43)
8 2iub_A CORA, divalent cation t 19.8 2E+02 0.0067 22.4 5.5 32 45-76 315-354 (363)
9 2lx0_A Membrane fusion protein 15.0 99 0.0034 16.3 1.8 17 48-64 8-24 (32)
10 1q90_G Cytochrome B6F complex 14.4 61 0.0021 18.0 0.9 14 43-56 4-17 (37)
No 1
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=42.29 E-value=13 Score=21.13 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhcc
Q 033319 41 FLSIIGGVIAGILGF 55 (122)
Q Consensus 41 ~~s~l~Gi~AGILGL 55 (122)
++.++.|+.|||+|.
T Consensus 12 i~lII~~vmaGiIG~ 26 (40)
T 1afo_A 12 ITLIIFGVMAGVIGT 26 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 467889999998863
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=36.04 E-value=23 Score=20.38 Aligned_cols=13 Identities=38% Similarity=0.531 Sum_probs=8.2
Q ss_pred HHHHHHHHhhhhc
Q 033319 42 LSIIGGVIAGILG 54 (122)
Q Consensus 42 ~s~l~Gi~AGILG 54 (122)
.++.+|++.|+++
T Consensus 10 ~aIA~gVVgGv~~ 22 (44)
T 2l2t_A 10 PLIAAGVIGGLFI 22 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHH
Confidence 4566677776654
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=26.29 E-value=2e+02 Score=21.99 Aligned_cols=32 Identities=22% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHhhhhccc--------chhHHHHHHHHHHHHHHHHH
Q 033319 45 IGGVIAGILGFT--------GLMGFVFYFLIMAITSVCLM 76 (122)
Q Consensus 45 l~Gi~AGILGLt--------g~~GFlfy~~~~~~~sll~~ 76 (122)
....+||+.|.- .-+||.+.++.+++++++.+
T Consensus 291 P~T~IaGiyGMNf~~mPel~~~~gy~~~l~~m~~~~~~~~ 330 (339)
T 4ev6_A 291 VPMWITGIYGMNFSYLPLANNPQGFWLVMALMVVIIMIFV 330 (339)
T ss_dssp HHHHHHHHTTCCCSCCTTSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCcCCCCCCccCchHHHHHHHHHHHHHHHHH
Confidence 357788988752 33577777666666665444
No 4
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=26.21 E-value=16 Score=21.06 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=6.4
Q ss_pred HHHHHHHhhhhc
Q 033319 43 SIIGGVIAGILG 54 (122)
Q Consensus 43 s~l~Gi~AGILG 54 (122)
++.+|++.|+++
T Consensus 12 ~IA~gVVgGv~~ 23 (44)
T 2ks1_B 12 SIATGMVGALLL 23 (44)
T ss_dssp SSTHHHHHHHHH
T ss_pred eEEeehhHHHHH
Confidence 445566665543
No 5
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=21.15 E-value=1.5e+02 Score=18.58 Aligned_cols=12 Identities=33% Similarity=0.551 Sum_probs=9.0
Q ss_pred HHHHHHHHhhhh
Q 033319 42 LSIIGGVIAGIL 53 (122)
Q Consensus 42 ~s~l~Gi~AGIL 53 (122)
.+++.|+++||+
T Consensus 11 ~~Iv~gvi~gil 22 (79)
T 2knc_B 11 LVVLLSVMGAIL 22 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 567788888876
No 6
>3e1r_A Centrosomal protein of 55 kDa; CEP55, ALIX, cytokinesis, ESCRT, alternative splicing, cell cycle, cell division, coiled coil, mitosis; 2.00A {Homo sapiens}
Probab=20.55 E-value=1.3e+02 Score=18.19 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=30.5
Q ss_pred cccChHHHHhhHHHHHHHHHHHHHHHHHHhhhhccc
Q 033319 21 QIFNAENLQSNMKVIYYSRTFLSIIGGVIAGILGFT 56 (122)
Q Consensus 21 ~~~~~~~v~~N~~~l~~~r~~~s~l~Gi~AGILGLt 56 (122)
+.--.++..+|.+=+-|-+|=-+-+=|+.|+|+-|+
T Consensus 12 e~qLkDaleknqqWlvydqqReayV~gll~~i~ele 47 (58)
T 3e1r_A 12 EIQLKDALEKNQQWLVYDQQREVYVKGLLAKIFELE 47 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344467899999999999999999999999998765
No 7
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=20.09 E-value=64 Score=18.14 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=9.6
Q ss_pred HHHHHHHHHhhhh
Q 033319 41 FLSIIGGVIAGIL 53 (122)
Q Consensus 41 ~~s~l~Gi~AGIL 53 (122)
..+++.|+++||+
T Consensus 9 ~~~Iv~gvi~~iv 21 (43)
T 2k9j_B 9 ILVVLLSVMGAIL 21 (43)
T ss_dssp HHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHH
Confidence 4567788888776
No 8
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=19.75 E-value=2e+02 Score=22.38 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=17.0
Q ss_pred HHHHHhhhhccc--------chhHHHHHHHHHHHHHHHHH
Q 033319 45 IGGVIAGILGFT--------GLMGFVFYFLIMAITSVCLM 76 (122)
Q Consensus 45 l~Gi~AGILGLt--------g~~GFlfy~~~~~~~sll~~ 76 (122)
..-.+|||.|.- .-+||...++.+++++++.+
T Consensus 315 P~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~ 354 (363)
T 2iub_A 315 PLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMV 354 (363)
T ss_dssp HHHHHTTSCC--------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 346788887752 33577666666666665444
No 9
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=14.96 E-value=99 Score=16.26 Aligned_cols=17 Identities=35% Similarity=0.807 Sum_probs=8.0
Q ss_pred HHhhhhcccchhHHHHH
Q 033319 48 VIAGILGFTGLMGFVFY 64 (122)
Q Consensus 48 i~AGILGLtg~~GFlfy 64 (122)
++||.+.|--+..|.|.
T Consensus 8 viaglvalltflafgfw 24 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFW 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555444444444444
No 10
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=14.41 E-value=61 Score=18.04 Aligned_cols=14 Identities=21% Similarity=0.662 Sum_probs=10.5
Q ss_pred HHHHHHHhhhhccc
Q 033319 43 SIIGGVIAGILGFT 56 (122)
Q Consensus 43 s~l~Gi~AGILGLt 56 (122)
.+++|++-|.++.|
T Consensus 4 ~lL~GIVlGlipvt 17 (37)
T 1q90_G 4 PLLCGIVLGLVPVT 17 (37)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHhhHHHH
Confidence 46788888887765
Done!