Query 033319
Match_columns 122
No_of_seqs 104 out of 186
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 20:47:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033319.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033319hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 43.5 15 0.0011 19.2 3.4 22 58-79 6-27 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 41.3 14 0.001 20.1 3.2 22 58-79 5-26 (45)
3 d2e74e1 f.23.24.1 (E:1-32) Pet 25.0 21 0.0015 17.6 1.9 14 40-53 10-23 (32)
4 d1nekc_ f.21.2.2 (C:) Succinat 20.2 40 0.0029 21.1 3.1 18 96-113 66-83 (129)
5 d1q90g_ f.23.26.1 (G:) PetG su 19.7 18 0.0013 17.9 0.9 15 43-57 4-18 (30)
6 d1rh5b_ f.23.28.1 (B:) Preprot 18.2 81 0.0059 17.5 4.6 33 36-73 22-54 (56)
7 d1rh1a2 f.1.1.1 (A:313-511) Co 13.8 74 0.0054 22.1 3.4 30 41-70 151-181 (199)
8 d2h8pc1 f.14.1.1 (C:22-78) Pot 13.1 1.1E+02 0.0081 16.7 3.6 19 71-89 22-40 (57)
9 d1he1a_ a.24.11.1 (A:) ExoS to 9.9 90 0.0066 20.3 2.6 35 17-51 26-64 (135)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.2 1.8E+02 0.013 17.2 3.9 29 21-49 17-45 (107)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=43.47 E-value=15 Score=19.18 Aligned_cols=22 Identities=9% Similarity=0.300 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 033319 58 LMGFVFYFLIMAITSVCLMAKA 79 (122)
Q Consensus 58 ~~GFlfy~~~~~~~sll~~~k~ 79 (122)
+.|.+.|+++.++.-.++..|.
T Consensus 6 v~gl~~F~~~v~laQi~lVlKK 27 (37)
T d1vf5c3 6 VKWMIAFICLVMLAQLMLILKK 27 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888777777754
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=41.32 E-value=14 Score=20.09 Aligned_cols=22 Identities=27% Similarity=0.581 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 033319 58 LMGFVFYFLIMAITSVCLMAKA 79 (122)
Q Consensus 58 ~~GFlfy~~~~~~~sll~~~k~ 79 (122)
+.|+++|+++.++.-.++..|.
T Consensus 5 v~gll~F~~~v~laQi~LVLKK 26 (45)
T d1q90a3 5 IQGLLVFFSFVLLTQVLLVLKK 26 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888777777776653
No 3
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=25.02 E-value=21 Score=17.61 Aligned_cols=14 Identities=29% Similarity=0.759 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhhh
Q 033319 40 TFLSIIGGVIAGIL 53 (122)
Q Consensus 40 ~~~s~l~Gi~AGIL 53 (122)
.+.++.+|++.||+
T Consensus 10 vfialffgiavgii 23 (32)
T d2e74e1 10 VFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhe
Confidence 46788889888874
No 4
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=20.20 E-value=40 Score=21.07 Aligned_cols=18 Identities=6% Similarity=0.165 Sum_probs=12.2
Q ss_pred cccccchhhhhhHhhhhc
Q 033319 96 DGFLGGLMSFVLFWTYPS 113 (122)
Q Consensus 96 ~g~~~~l~~FvL~Wtl~Y 113 (122)
+.....+.-|.+.|.+.|
T Consensus 66 ~~~~~~~~~~~~~~~~~y 83 (129)
T d1nekc_ 66 GSFFVKFIMWGILTALAY 83 (129)
T ss_dssp TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566677777777766
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=19.73 E-value=18 Score=17.87 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=11.4
Q ss_pred HHHHHHHhhhhcccc
Q 033319 43 SIIGGVIAGILGFTG 57 (122)
Q Consensus 43 s~l~Gi~AGILGLtg 57 (122)
.+++|++-|.++.|-
T Consensus 4 ~ll~GivlGlipiTl 18 (30)
T d1q90g_ 4 PLLCGIVLGLVPVTI 18 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHhHHHhhHHHHH
Confidence 467888888888763
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=18.18 E-value=81 Score=17.53 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHH
Q 033319 36 YYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSV 73 (122)
Q Consensus 36 ~~~r~~~s~l~Gi~AGILGLtg~~GFlfy~~~~~~~sl 73 (122)
++.+...+...|+. +-|.-||+.|++...+-+.
T Consensus 22 Ef~~ia~v~~iG~~-----i~G~IGf~I~li~~~i~~i 54 (56)
T d1rh5b_ 22 EYLAVAKVTALGIS-----LLGIIGYIIHVPATYIKGI 54 (56)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhh
Confidence 45555555555543 3456777777776665443
No 7
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.77 E-value=74 Score=22.08 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhhccc-chhHHHHHHHHHHH
Q 033319 41 FLSIIGGVIAGILGFT-GLMGFVFYFLIMAI 70 (122)
Q Consensus 41 ~~s~l~Gi~AGILGLt-g~~GFlfy~~~~~~ 70 (122)
..|.+.|...|++|+. ..-|++-.++..++
T Consensus 151 ~fs~~~g~~~~~~g~~~t~vgi~giii~~~v 181 (199)
T d1rh1a2 151 LFSLTLGSALIAFGLSATVVGFVGVVIAGAI 181 (199)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4566777778888886 34455443333333
No 8
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.09 E-value=1.1e+02 Score=16.68 Aligned_cols=19 Identities=5% Similarity=-0.141 Sum_probs=8.4
Q ss_pred HHHHHHHHhCCcccccccc
Q 033319 71 TSVCLMAKAKFSVHSYFDS 89 (122)
Q Consensus 71 ~sll~~~k~~~~~~~yF~s 89 (122)
.|.+.|.--+..+..-|.|
T Consensus 22 ~s~~~y~~E~~~~~~~f~s 40 (57)
T d2h8pc1 22 GSYLAVLAERGAPGAQLIT 40 (57)
T ss_dssp HHHHHHHHHTTSTTCCCCS
T ss_pred HHHHHHHHhcCCCCccccc
Confidence 3444444233334444666
No 9
>d1he1a_ a.24.11.1 (A:) ExoS toxin {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.95 E-value=90 Score=20.34 Aligned_cols=35 Identities=20% Similarity=0.370 Sum_probs=27.9
Q ss_pred CCCccccChHHHHhhHHHHH----HHHHHHHHHHHHHhh
Q 033319 17 SNDLQIFNAENLQSNMKVIY----YSRTFLSIIGGVIAG 51 (122)
Q Consensus 17 ~~~~~~~~~~~v~~N~~~l~----~~r~~~s~l~Gi~AG 51 (122)
..+++-++.|++++|-+.+- -+|+++.-+-|+..|
T Consensus 26 a~qL~~ldae~L~knh~~lAtGnG~LRsl~T~Lqgi~~g 64 (135)
T d1he1a_ 26 ASELATLTPEGLAREHSRLASGDGALRSLSTALAGIRAG 64 (135)
T ss_dssp TGGGGGCCHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred hHHHhccCHHHHhhhhHHHhcCCccHHHHHHHhhhhhcc
Confidence 35788899999999988754 478888888887755
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.18 E-value=1.8e+02 Score=17.21 Aligned_cols=29 Identities=7% Similarity=-0.087 Sum_probs=19.3
Q ss_pred cccChHHHHhhHHHHHHHHHHHHHHHHHH
Q 033319 21 QIFNAENLQSNMKVIYYSRTFLSIIGGVI 49 (122)
Q Consensus 21 ~~~~~~~v~~N~~~l~~~r~~~s~l~Gi~ 49 (122)
+..-||......+.+...++.+-.+..++
T Consensus 17 ql~fqd~~Sp~ae~i~~lh~~v~~i~~~I 45 (107)
T d3ehbb2 17 GMNFQPASSPLAHDQQWLDHFVLYIITAV 45 (107)
T ss_dssp CCSCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45556666677777888877776655443
Done!