Your job contains 1 sequence.
>033320
MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV
CSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGSDK
NI
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033320
(122 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2101170 - symbol:AT3G48440 species:3702 "Arabi... 403 1.5e-37 1
TAIR|locus:1006230718 - symbol:AT1G48195 species:3702 "Ar... 346 1.6e-31 1
TAIR|locus:2171407 - symbol:ZFN3 "zinc finger nuclease 3"... 331 6.2e-30 1
TAIR|locus:2075477 - symbol:ZFN1 "zinc finger protein 1" ... 318 1.5e-28 1
TAIR|locus:2043368 - symbol:AT2G47850 species:3702 "Arabi... 296 6.3e-26 1
TAIR|locus:2081066 - symbol:AT3G06410 species:3702 "Arabi... 294 9.8e-26 1
TAIR|locus:2182988 - symbol:AT5G18550 species:3702 "Arabi... 276 1.1e-23 1
TAIR|locus:2010562 - symbol:AT1G04990 species:3702 "Arabi... 262 1.8e-22 1
TAIR|locus:2087775 - symbol:HUA1 "ENHANCER OF AG-4 1" spe... 229 2.6e-18 1
TAIR|locus:2013763 - symbol:AT1G29570 species:3702 "Arabi... 113 1.0e-07 2
WB|WBGene00003228 - symbol:mex-1 species:6239 "Caenorhabd... 112 4.2e-07 2
ASPGD|ASPL0000062209 - symbol:AN0298 species:162425 "Emer... 117 8.4e-07 1
DICTYBASE|DDB_G0270148 - symbol:cpsf4 "cleavage and polya... 95 1.9e-05 2
CGD|CAL0005897 - symbol:YTH1 species:5476 "Candida albica... 103 2.0e-05 1
UNIPROTKB|Q59T36 - symbol:YTH1 "mRNA 3'-end-processing pr... 103 2.0e-05 1
ASPGD|ASPL0000000121 - symbol:AN6331 species:162425 "Emer... 98 3.3e-05 2
POMBASE|SPAC227.08c - symbol:yth1 "mRNA cleavage and poly... 97 4.4e-05 1
CGD|CAL0004295 - symbol:orf19.5334 species:5476 "Candida ... 98 6.4e-05 1
SGD|S000006311 - symbol:YTH1 "Essential RNA-binding compo... 96 0.00011 1
DICTYBASE|DDB_G0270816 - symbol:DDB_G0270816 "Zinc finger... 102 0.00011 1
UNIPROTKB|E1BV31 - symbol:CPSF4 "Uncharacterized protein"... 97 0.00013 1
FB|FBgn0029152 - symbol:Mkrn1 "Makorin 1" species:7227 "D... 100 0.00014 1
WB|WBGene00009532 - symbol:ccch-1 species:6239 "Caenorhab... 89 0.00015 2
SGD|S000004126 - symbol:TIS11 "mRNA-binding protein expre... 97 0.00018 1
TAIR|locus:2013758 - symbol:AT1G29560 species:3702 "Arabi... 101 0.00019 1
UNIPROTKB|H9KVA5 - symbol:CPSF4L "Putative cleavage and p... 90 0.00021 1
UNIPROTKB|D4A905 - symbol:Cpsf4 "Cleavage and polyadenyla... 95 0.00022 1
UNIPROTKB|C9JEV9 - symbol:CPSF4 "Cleavage and polyadenyla... 93 0.00026 1
MGI|MGI:1861602 - symbol:Cpsf4 "cleavage and polyadenylat... 93 0.00026 1
UNIPROTKB|E2RBK7 - symbol:CPSF4 "Uncharacterized protein"... 93 0.00026 1
UNIPROTKB|G3V789 - symbol:Mkrn1 "Protein Mkrn1" species:1... 75 0.00033 2
UNIPROTKB|B7Z7B0 - symbol:CPSF4 "Cleavage and polyadenyla... 91 0.00034 1
UNIPROTKB|C9K0K2 - symbol:CPSF4 "Cleavage and polyadenyla... 88 0.00035 1
UNIPROTKB|A6NMK7 - symbol:CPSF4L "Putative cleavage and p... 89 0.00048 1
UNIPROTKB|O19137 - symbol:CPSF4 "Cleavage and polyadenyla... 91 0.00060 1
UNIPROTKB|I3LCK9 - symbol:LOC100738395 "Uncharacterized p... 91 0.00060 1
RGD|620440 - symbol:Cpsf4 "cleavage and polyadenylation s... 91 0.00060 1
UNIPROTKB|J9P398 - symbol:CPSF4 "Uncharacterized protein"... 91 0.00073 1
UNIPROTKB|O95639 - symbol:CPSF4 "Cleavage and polyadenyla... 91 0.00073 1
UNIPROTKB|F1NHU3 - symbol:ZC3H3 "Uncharacterized protein"... 93 0.00077 1
UNIPROTKB|E2RBM0 - symbol:CPSF4 "Uncharacterized protein"... 88 0.00092 1
>TAIR|locus:2101170 [details] [associations]
symbol:AT3G48440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AL049659
HOGENOM:HOG000237733 EMBL:BT033139 IPI:IPI00517303 PIR:T06698
RefSeq:NP_190414.1 UniGene:At.50258 ProteinModelPortal:Q9STM4
SMR:Q9STM4 PaxDb:Q9STM4 PRIDE:Q9STM4 EnsemblPlants:AT3G48440.1
GeneID:824003 KEGG:ath:AT3G48440 TAIR:At3g48440 eggNOG:NOG288127
InParanoid:Q9STM4 OMA:PEWNGYQ PhylomeDB:Q9STM4
ProtClustDB:CLSN2719348 Genevestigator:Q9STM4 GermOnline:AT3G48440
Uniprot:Q9STM4
Length = 448
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 66/98 (67%), Positives = 80/98 (81%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
M +EFPERP QPECSY+++TGDCK+K NCKYHHPKNR+PK PP L+DKGLPLRP QN+
Sbjct: 338 MPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNI 397
Query: 61 CSYYSRYGICKFGPACKYDHPIHPDASAEYG---LDPP 95
C+YYSRYGICKFGPAC++DH + P S E ++PP
Sbjct: 398 CTYYSRYGICKFGPACRFDHSVQPPYSTESSQAIVEPP 435
Score = 200 (75.5 bits), Expect = 2.5e-15, P = 2.5e-15
Identities = 39/93 (41%), Positives = 55/93 (59%)
Query: 11 GQPECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYG 68
G +C Y+ RTG CKY C+++H PK+ + +P L+ GLPLRPG+ C YY R G
Sbjct: 160 GLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAPE--LNFLGLPLRPGEVECPYYMRNG 217
Query: 69 ICKFGPACKYDHPIHPDASAEYGLDPPPSFGDS 101
CK+G CK++HP D + G D P G++
Sbjct: 218 SCKYGAECKFNHP---DPTTIGGTDSPSFRGNN 247
Score = 166 (63.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 33/81 (40%), Positives = 48/81 (59%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHP---KNRIPKSPPCT-LSDKGLPLRPGQNVC 61
+P RPG +CS+++RTG CK+ S+CK++HP K +I + D G L G C
Sbjct: 107 YPVRPGAEDCSFYMRTGSCKFGSSCKFNHPLARKFQIARDNKVREKEDDGGKL--GLIDC 164
Query: 62 SYYSRYGICKFGPACKYDHPI 82
YY R G CK+G C+++H I
Sbjct: 165 KYYFRTGGCKYGETCRFNHTI 185
Score = 114 (45.2 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 48 SDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPI 82
S+ P+RPG CS+Y R G CKFG +CK++HP+
Sbjct: 103 SENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPL 137
Score = 111 (44.1 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 7 PERPGQPECSYFLRTGDCKYKSNCKYHHP 35
P RPG+ EC Y++R G CKY + CK++HP
Sbjct: 202 PLRPGEVECPYYMRNGSCKYGAECKFNHP 230
>TAIR|locus:1006230718 [details] [associations]
symbol:AT1G48195 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC023673 EMBL:BX818039 IPI:IPI00522286
RefSeq:NP_973988.1 UniGene:At.38465 UniGene:At.63148
ProteinModelPortal:Q3ECU8 SMR:Q3ECU8 EnsemblPlants:AT1G48195.1
GeneID:2745816 KEGG:ath:AT1G48195 TAIR:At1g48195 eggNOG:NOG304278
HOGENOM:HOG000107451 InParanoid:Q3ECU8 OMA:AICPHYS PhylomeDB:Q3ECU8
ProtClustDB:CLSN2681286 Genevestigator:Q3ECU8 Uniprot:Q3ECU8
Length = 82
Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
Identities = 55/80 (68%), Positives = 66/80 (82%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
M ++FPERPG+PECSY+LRTG+C K NCKYHHPKN P P CTL+DKGLPLRPGQ +
Sbjct: 1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAI 60
Query: 61 CSYYSRYGICKFGPACKYDH 80
C +YSR+GIC+ GP CK+DH
Sbjct: 61 CPHYSRFGICRSGPTCKFDH 80
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 47 LSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
+S++ P RPG+ CSYY R G C CKY HP
Sbjct: 1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHP 35
>TAIR|locus:2171407 [details] [associations]
symbol:ZFN3 "zinc finger nuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AB005242 GO:GO:0004518
HOGENOM:HOG000237733 EMBL:AF138872 EMBL:AY084634 EMBL:AY128342
EMBL:BT000014 EMBL:BX831982 IPI:IPI00516322 IPI:IPI00528450
IPI:IPI00528912 RefSeq:NP_568332.2 RefSeq:NP_851041.1
RefSeq:NP_974790.1 UniGene:At.21711 ProteinModelPortal:Q8L7N8
SMR:Q8L7N8 EnsemblPlants:AT5G16540.1 GeneID:831516
KEGG:ath:AT5G16540 GeneFarm:4900 TAIR:At5g16540 eggNOG:NOG281021
InParanoid:Q8L7N8 OMA:SAGNQGM PhylomeDB:Q8L7N8
ProtClustDB:CLSN2690167 Genevestigator:Q8L7N8 Uniprot:Q8L7N8
Length = 375
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 56/104 (53%), Positives = 73/104 (70%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FPERPGQPEC ++++TGDCK+ + CK+HHP++R P C LS GLPLRPG+ +C +YS
Sbjct: 240 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVFYS 299
Query: 66 RYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGM 109
RYGICKFGP+CK+DHP+ P PS S+ QET +
Sbjct: 300 RYGICKFGPSCKFDHPMRVFTYNNNTASPSPS---SSLHQETAI 340
Score = 234 (87.4 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
E+PER GQPEC ++L+TG CK+ CK+HHP+N+ +++ PLRP ++ CSY+
Sbjct: 83 EYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYF 142
Query: 65 SRYGICKFGPACKYDHP 81
R G CKFG CK++HP
Sbjct: 143 LRIGQCKFGGTCKFNHP 159
Score = 200 (75.5 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 38/83 (45%), Positives = 53/83 (63%)
Query: 1 MLVD-EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-LPLRPGQ 58
M VD +PER G+P+C+Y++RTG C++ S C+++HP +R K T KG P R GQ
Sbjct: 33 MGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDR--KLVIATARIKGEYPERIGQ 90
Query: 59 NVCSYYSRYGICKFGPACKYDHP 81
C +Y + G CKFG CK+ HP
Sbjct: 91 PECEFYLKTGTCKFGVTCKFHHP 113
Score = 114 (45.2 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL 54
+P RP + +CSYFLR G CK+ CK++HP+ + S +S +G P+
Sbjct: 130 YPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQTQ---STNLMVSVRGSPV 175
Score = 105 (42.0 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 34 HPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
H N +P + P RPGQ C +Y + G CKFG CK+ HP
Sbjct: 222 HSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHP 269
>TAIR|locus:2075477 [details] [associations]
symbol:ZFN1 "zinc finger protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0004518 "nuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0010313 "phytochrome
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IMP] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IPI] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0017148 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0048027 GO:GO:0004518 HOGENOM:HOG000237733
EMBL:AF138743 EMBL:AC018363 EMBL:AK117978 EMBL:BT025966
IPI:IPI00539955 PIR:T48874 RefSeq:NP_566183.1 UniGene:At.23706
ProteinModelPortal:Q8GXX7 SMR:Q8GXX7 STRING:Q8GXX7 PaxDb:Q8GXX7
PRIDE:Q8GXX7 EnsemblPlants:AT3G02830.1 GeneID:821230
KEGG:ath:AT3G02830 GeneFarm:4898 TAIR:At3g02830 eggNOG:NOG329662
InParanoid:Q8GXX7 OMA:SSDDQQR PhylomeDB:Q8GXX7
ProtClustDB:CLSN2917075 Genevestigator:Q8GXX7 GermOnline:AT3G02830
Uniprot:Q8GXX7
Length = 397
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 59/123 (47%), Positives = 81/123 (65%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FPERPGQPEC ++++TGDCK+ + CK+HHP++R P C LS GLPLRPG+ +C +Y+
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330
Query: 66 RYGICKFGPACKYDHPI----HPDASAEYGLDPPPSFGDST--TRQETGMAGTGNGNGSD 119
RYGICKFGP+CK+DHP+ + + ++E S G S + ET A T +G D
Sbjct: 331 RYGICKFGPSCKFDHPMRVFTYDNTASETDEVVETSTGKSRRLSVSETRQAAT-TSSGKD 389
Query: 120 KNI 122
I
Sbjct: 390 TTI 392
Score = 231 (86.4 bits), Expect = 6.1e-19, P = 6.1e-19
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
E+PER GQPEC Y+L+TG CK+ CK+HHP+N+ + +L+ G PLR + C+Y+
Sbjct: 81 EYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYF 140
Query: 65 SRYGICKFGPACKYDHP 81
R G CKFG CK++HP
Sbjct: 141 LRTGHCKFGGTCKFNHP 157
Score = 211 (79.3 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 37/82 (45%), Positives = 53/82 (64%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-LPLRPGQN 59
M +PERPG+P+CSY++RTG C++ S C+++HP++R + T +G P R GQ
Sbjct: 32 METGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDR--ELVIATARMRGEYPERIGQP 89
Query: 60 VCSYYSRYGICKFGPACKYDHP 81
C YY + G CKFG CK+ HP
Sbjct: 90 ECEYYLKTGTCKFGVTCKFHHP 111
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 46 TLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
T+ P RPG+ CSYY R G+C+FG C+++HP
Sbjct: 31 TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHP 66
Score = 104 (41.7 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPK 36
+P R + +C+YFLRTG CK+ CK++HP+
Sbjct: 128 YPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQ 158
>TAIR|locus:2043368 [details] [associations]
symbol:AT2G47850 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 EMBL:AC005309 EMBL:BT030391
EMBL:BT004106 IPI:IPI00519400 PIR:C84920 RefSeq:NP_001078078.1
RefSeq:NP_182306.2 UniGene:At.21006 ProteinModelPortal:Q84W91
SMR:Q84W91 PaxDb:Q84W91 PRIDE:Q84W91 EnsemblPlants:AT2G47850.1
EnsemblPlants:AT2G47850.3 GeneID:819397 KEGG:ath:AT2G47850
TAIR:At2g47850 eggNOG:NOG312935 HOGENOM:HOG000237733
InParanoid:Q84W91 OMA:RYGVACK PhylomeDB:Q84W91
ProtClustDB:CLSN2680305 Genevestigator:Q84W91 GermOnline:AT2G47850
Uniprot:Q84W91
Length = 468
Score = 296 (109.3 bits), Expect = 6.3e-26, P = 6.3e-26
Identities = 45/77 (58%), Positives = 60/77 (77%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FPERPG+PEC Y+L+TGDCK+ ++CK+HHP++R+P C LS GLPLRPG C++Y
Sbjct: 286 FPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTFYV 345
Query: 66 RYGICKFGPACKYDHPI 82
+ G CKFG CK+DHP+
Sbjct: 346 QNGFCKFGSTCKFDHPM 362
Score = 233 (87.1 bits), Expect = 6.9e-19, P = 6.9e-19
Identities = 41/93 (44%), Positives = 58/93 (62%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
++PER G+P C ++L+TG CK+ ++CK+HHPKN L+ G P+R G N CSYY
Sbjct: 86 QYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYY 145
Query: 65 SRYGICKFGPACKYDHPIHPDASAEYGLDPPPS 97
+ G CKFG CK+ HP P + + PPP+
Sbjct: 146 LKTGQCKFGITCKFHHP-QPAGTT---VPPPPA 174
Score = 213 (80.0 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 37/88 (42%), Positives = 55/88 (62%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-LPLRPGQNVCS 62
D +PERPG P+C+Y++RTG C Y + C+Y+HP++R S T+ G P R G+ C
Sbjct: 40 DSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDRA--SVEATVRATGQYPERFGEPPCQ 97
Query: 63 YYSRYGICKFGPACKYDHPIHPDASAEY 90
+Y + G CKFG +CK+ HP + S +
Sbjct: 98 FYLKTGTCKFGASCKFHHPKNAGGSMSH 125
Score = 104 (41.7 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 49 DKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
++ P RPG+ C YY + G CKFG +CK+ HP
Sbjct: 283 EQAFPERPGEPECQYYLKTGDCKFGTSCKFHHP 315
Score = 101 (40.6 bits), Expect = 0.00015, P = 0.00015
Identities = 19/43 (44%), Positives = 24/43 (55%)
Query: 47 LSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASAE 89
L P RPG C+YY R G+C +G C+Y+HP AS E
Sbjct: 37 LGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHP-RDRASVE 78
Score = 100 (40.3 bits), Expect = 0.00019, P = 0.00019
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCT-LSDKGLPLRP 56
P RPG C+++++ G CK+ S CK+ HP I +P + L+D P+ P
Sbjct: 333 PLRPGVQRCTFYVQNGFCKFGSTCKFDHPMGTIRYNPSASSLADA--PVAP 381
>TAIR|locus:2081066 [details] [associations]
symbol:AT3G06410 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:AC011623
eggNOG:NOG312935 HOGENOM:HOG000237733 EMBL:AK230312 EMBL:AK230438
IPI:IPI00535086 RefSeq:NP_187292.2 UniGene:At.27771
ProteinModelPortal:Q9SQU4 SMR:Q9SQU4 EnsemblPlants:AT3G06410.1
GeneID:819815 KEGG:ath:AT3G06410 TAIR:At3g06410 InParanoid:Q9SQU4
OMA:SSQQYGL PhylomeDB:Q9SQU4 ProtClustDB:CLSN2681554
Genevestigator:Q9SQU4 GermOnline:AT3G06410 Uniprot:Q9SQU4
Length = 462
Score = 294 (108.6 bits), Expect = 9.8e-26, P = 9.8e-26
Identities = 47/83 (56%), Positives = 62/83 (74%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
EFP+RP QPEC YF+RTGDCK+ S+C+YHHP + +P LS GLPLRPG C+++
Sbjct: 303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHF 362
Query: 65 SRYGICKFGPACKYDHPIHPDAS 87
+++GICKFGPACK+DH + S
Sbjct: 363 AQHGICKFGPACKFDHSMSSSLS 385
Score = 232 (86.7 bits), Expect = 8.5e-19, P = 8.5e-19
Identities = 40/78 (51%), Positives = 52/78 (66%)
Query: 7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSP--PCTLSDKGLPLRPGQNVCSYY 64
PER G P C +F+RTG CK+ ++CKYHHP+ P +LS G PLRPG+ CSYY
Sbjct: 98 PERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSYY 157
Query: 65 SRYGICKFGPACKYDHPI 82
R G CKFG C+++HP+
Sbjct: 158 LRTGQCKFGLTCRFNHPV 175
Score = 205 (77.2 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 35/78 (44%), Positives = 48/78 (61%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+ +PERP +P+C Y+LRTG C Y S C+++HP++R LP R G VC +
Sbjct: 49 ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQH 108
Query: 64 YSRYGICKFGPACKYDHP 81
+ R G CKFG +CKY HP
Sbjct: 109 FMRTGTCKFGASCKYHHP 126
Score = 123 (48.4 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPP 44
+P RPG+ ECSY+LRTG CK+ C+++HP + PP
Sbjct: 145 YPLRPGEKECSYYLRTGQCKFGLTCRFNHPVPLAVQGPP 183
Score = 109 (43.4 bits), Expect = 4.0e-16, Sum P(2) = 4.0e-16
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 43 PPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPI 82
P + K P RP Q C Y+ R G CKFG +C+Y HP+
Sbjct: 295 PSSNSTSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPV 334
>TAIR|locus:2182988 [details] [associations]
symbol:AT5G18550 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 eggNOG:NOG312935
HOGENOM:HOG000237733 ProtClustDB:CLSN2681554 EMBL:AC069328
EMBL:BT010886 EMBL:AK230175 IPI:IPI00533261 RefSeq:NP_197356.2
UniGene:At.22535 ProteinModelPortal:Q6NPN3 SMR:Q6NPN3 STRING:Q6NPN3
PaxDb:Q6NPN3 PRIDE:Q6NPN3 EnsemblPlants:AT5G18550.1 GeneID:831973
KEGG:ath:AT5G18550 TAIR:At5g18550 InParanoid:Q6NPN3 OMA:GSQPCAY
PhylomeDB:Q6NPN3 Genevestigator:Q6NPN3 GermOnline:AT5G18550
Uniprot:Q6NPN3
Length = 465
Score = 276 (102.2 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 49/93 (52%), Positives = 65/93 (69%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPC-TLSDKGLPLRPGQNVCSYY 64
FP+RP QPEC YF+RTGDCK+ ++C++HHP SP TLS GLPLRPG C+++
Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAA--SPEASTLSHIGLPLRPGAVPCTHF 354
Query: 65 SRYGICKFGPACKYDHPIHPDASAEYGLDPPPS 97
+++GICKFGPACK+DH + S+ P PS
Sbjct: 355 AQHGICKFGPACKFDHSL---GSSSLSYSPSPS 384
Score = 257 (95.5 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 44/86 (51%), Positives = 56/86 (65%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRI--PKSPPCTLSDKGLPLRPGQNVCS 62
EFPER GQP C +F+RTG CK+ ++CKYHHP+ P +L+ G PLRPG+ CS
Sbjct: 93 EFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECS 152
Query: 63 YYSRYGICKFGPACKYDHPIHPDASA 88
Y+ R G CKFG C+Y HP+ P A
Sbjct: 153 YFMRTGQCKFGSTCRYHHPVPPGVQA 178
Score = 225 (84.3 bits), Expect = 5.1e-18, P = 5.1e-18
Identities = 38/78 (48%), Positives = 49/78 (62%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+ FPERP +P+C Y+LRTG C Y S C+++HP+NR P P R GQ VC +
Sbjct: 46 ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQH 105
Query: 64 YSRYGICKFGPACKYDHP 81
+ R G CKFG +CKY HP
Sbjct: 106 FMRTGTCKFGASCKYHHP 123
Score = 106 (42.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 40 PKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIH---PDAS--AEYGLDP 94
P S + ++ P RP Q C Y+ R G CKFG +C++ HP+ P+AS + GL
Sbjct: 285 PSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEASTLSHIGLPL 344
Query: 95 PPSFGDSTTRQETGMAGTG 113
P T + G+ G
Sbjct: 345 RPGAVPCTHFAQHGICKFG 363
>TAIR|locus:2010562 [details] [associations]
symbol:AT1G04990 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=RCA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003723 GO:GO:0090305 EMBL:AC004809
GO:GO:0004518 HOGENOM:HOG000237733 EMBL:AY048253 EMBL:AY113065
IPI:IPI00522113 PIR:F86183 RefSeq:NP_563725.1 RefSeq:NP_973759.1
UniGene:At.21743 ProteinModelPortal:Q94AD9 SMR:Q94AD9 PaxDb:Q94AD9
PRIDE:Q94AD9 EnsemblPlants:AT1G04990.1 EnsemblPlants:AT1G04990.2
GeneID:839351 KEGG:ath:AT1G04990 TAIR:At1g04990 eggNOG:NOG290936
InParanoid:Q94AD9 OMA:THQRISP PhylomeDB:Q94AD9
ProtClustDB:CLSN2687681 Genevestigator:Q94AD9 GermOnline:AT1G04990
Uniprot:Q94AD9
Length = 404
Score = 262 (97.3 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 52/108 (48%), Positives = 66/108 (61%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+E PER GQP+C YFL+TG CKY CKYHHPK+R + P + GLP+R G+ C Y
Sbjct: 85 EELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDR-NGAQPVMFNVIGLPMRLGEKPCPY 143
Query: 64 YSRYGICKFGPACKYDHPIHPDA--SAEYGLDPPPSFGDSTTRQETGM 109
Y R G C+FG ACK+ HP PD S YG+ SF + R +G+
Sbjct: 144 YLRTGTCRFGVACKFHHP-QPDNGHSTAYGMS---SFPAADLRYASGL 187
Score = 246 (91.7 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 46/111 (41%), Positives = 59/111 (53%)
Query: 8 ERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRY 67
E QPEC +F+ TG CKY +CKY HP RI + PP ++ LP RPGQ C + Y
Sbjct: 260 ESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSY 319
Query: 68 GICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGS 118
G CKFGP CK+DHP+ P P F T + ++ T N + S
Sbjct: 320 GFCKFGPNCKFDHPMLPYPGLTMATSLPTPFASPVTTHQR-ISPTPNRSDS 369
Score = 202 (76.2 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 34/79 (43%), Positives = 52/79 (65%)
Query: 3 VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCS 62
++ +P+RPG+ +C ++LRTG C Y S+C+Y+HP + +P+ + LP R GQ C
Sbjct: 41 LNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTH-LPQD--VAYYKEELPERIGQPDCE 97
Query: 63 YYSRYGICKFGPACKYDHP 81
Y+ + G CK+GP CKY HP
Sbjct: 98 YFLKTGACKYGPTCKYHHP 116
Score = 113 (44.8 bits), Expect = 5.9e-06, P = 5.9e-06
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 53 PLRPGQNVCSYYSRYGICKFGPACKYDHPIH-PDASAEYGLDPPPSFG 99
P RPG+ C +Y R G+C +G +C+Y+HP H P A Y + P G
Sbjct: 45 PDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIG 92
Score = 99 (39.9 bits), Expect = 0.00019, P = 0.00019
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 2 LVDEF--PERPGQPECSYFLRTGDCKYKSNCKYHHP 35
L++ F P RPGQP C F G CK+ NCK+ HP
Sbjct: 298 LINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHP 333
>TAIR|locus:2087775 [details] [associations]
symbol:HUA1 "ENHANCER OF AG-4 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA;TAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0016607
GO:GO:0008270 GO:GO:0006397 GO:GO:0003723 GO:GO:0009908
EMBL:AB024033 GO:GO:0001709 EMBL:AY024357 EMBL:AC069474
EMBL:AK229145 IPI:IPI00536814 RefSeq:NP_187874.2 UniGene:At.5670
ProteinModelPortal:Q941Q3 SMR:Q941Q3 STRING:Q941Q3 PaxDb:Q941Q3
PRIDE:Q941Q3 EnsemblPlants:AT3G12680.1 GeneID:820448
KEGG:ath:AT3G12680 TAIR:At3g12680 eggNOG:NOG250655
HOGENOM:HOG000078745 InParanoid:Q941Q3 OMA:LGAHNTI PhylomeDB:Q941Q3
ProtClustDB:CLSN2690537 Genevestigator:Q941Q3 Uniprot:Q941Q3
Length = 524
Score = 229 (85.7 bits), Expect = 2.6e-18, P = 2.6e-18
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRI-------PKSPPCTLSDKGLPLRPGQ 58
+P+RPGQ EC Y+++TG+CK+ CK+HHP +R+ P+ P LS G P R G
Sbjct: 417 YPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYPRREGA 476
Query: 59 NVCSYYSRYGICKFGPACKYDHP 81
C YY + G CK+G CK+DHP
Sbjct: 477 LNCPYYMKTGTCKYGATCKFDHP 499
Score = 216 (81.1 bits), Expect = 6.6e-17, P = 6.6e-17
Identities = 38/91 (41%), Positives = 58/91 (63%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+E+PERPG+P+C Y+++T CKY S CK++HP+ S + LP RP + +C++
Sbjct: 220 EEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVSVE---TQDSLPERPSEPMCTF 276
Query: 64 YSRYGICKFGPACKYDHP--IH-PDASAEYG 91
Y + G CKFG +CK+ HP I P +S + G
Sbjct: 277 YMKTGKCKFGLSCKFHHPKDIQLPSSSQDIG 307
Score = 163 (62.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 38/117 (32%), Positives = 61/117 (52%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHP----KNRIP--KSPPCTLSDKGLPLRPGQN 59
+P+R G+ +C+++++T CK+ +C++ HP + IP K P +++ P RPG+
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEE-YPERPGEP 229
Query: 60 VCSYYSRYGICKFGPACKYDHPIHPDA-SAEY--GLDPPPSFGDSTTRQETGMAGTG 113
C YY + CK+G CK++HP A S E L PS T +TG G
Sbjct: 230 DCPYYIKTQRCKYGSKCKFNHPREEAAVSVETQDSLPERPSEPMCTFYMKTGKCKFG 286
Score = 107 (42.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 42 SPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
+P + KGLP+R G+ C +Y + G CK+G C+Y+HP
Sbjct: 327 TPALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHP 366
Score = 104 (41.7 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNR--IPKS 42
P R G+ +C ++L+TG CKY + C+Y+HP+ IP++
Sbjct: 338 PVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQA 375
>TAIR|locus:2013763 [details] [associations]
symbol:AT1G29570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0048445 "carpel morphogenesis" evidence=RCA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 EMBL:AC068667 IPI:IPI00519526 PIR:G86418
RefSeq:NP_174250.1 UniGene:At.51822 EnsemblPlants:AT1G29570.1
GeneID:839834 KEGG:ath:AT1G29570 TAIR:At1g29570 eggNOG:NOG325481
HOGENOM:HOG000107458 OMA:HIMDRNV PhylomeDB:Q9C7P4
ProtClustDB:CLSN2914472 Genevestigator:Q9C7P4 Uniprot:Q9C7P4
Length = 321
Score = 113 (44.8 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPP 44
+P RPG+ +C ++L+ G C+Y+S+C+++HP R P+ P
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR-PQELP 89
Score = 91 (37.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 53 PLRPGQNVCSYYSRYGICKFGPACKYDHP 81
P+RPG+ C +Y + G+C++ +C+++HP
Sbjct: 53 PVRPGKKDCQFYLKNGLCRYRSSCRFNHP 81
Score = 33 (16.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 97 SFGDSTTRQETGMAGTG 113
+FGD T++ G+ +G
Sbjct: 125 TFGDERTQRRYGIEYSG 141
>WB|WBGene00003228 [details] [associations]
symbol:mex-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0001708 "cell fate specification" evidence=IMP]
[GO:0030010 "establishment of cell polarity" evidence=IMP]
[GO:0001704 "formation of primary germ layer" evidence=IMP]
[GO:0009880 "embryonic pattern specification" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] [GO:0003674 "molecular_function" evidence=NAS]
[GO:0003723 "RNA binding" evidence=ISS] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0001708
GO:GO:0009792 GO:GO:0002009 GO:GO:0008270 GO:GO:0000003
GO:GO:0003723 GO:GO:0009880 GO:GO:0030010 EMBL:AL023828 HSSP:P22893
GO:GO:0043186 GeneTree:ENSGT00530000063262 GO:GO:0001704 CTD:174836
EMBL:U81043 EMBL:Z66516 PIR:T26124 RefSeq:NP_001254325.1
UniGene:Cel.7263 ProteinModelPortal:G5ECB9 SMR:G5ECB9 IntAct:G5ECB9
EnsemblMetazoa:W03C9.7a.1 EnsemblMetazoa:W03C9.7a.2
EnsemblMetazoa:W03C9.7a.3 GeneID:174836 KEGG:cel:CELE_W03C9.7
WormBase:W03C9.7a OMA:HVERNQT NextBio:885712 Uniprot:G5ECB9
Length = 494
Score = 112 (44.5 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKN--RIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKF 72
C F R+G C Y C++ H +N R+P P K P Q +C +S +G C +
Sbjct: 144 CDAFKRSGSCPYGEACRFAHGENELRMPSQP----RGKAHPKYKTQ-LCDKFSNFGQCPY 198
Query: 73 GPACKYDHPI 82
GP C++ H +
Sbjct: 199 GPRCQFIHKL 208
Score = 34 (17.0 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 17/55 (30%), Positives = 21/55 (38%)
Query: 73 GPACKYDHPIHPDASAEYGLDPPPSFG--DSTTRQ---ETGMAGTGNGNGSDKNI 122
GP +H H + PPS G S Q E MA +G G +NI
Sbjct: 329 GPKRSDNHHYHHHHHQRRHIPAPPSTGPLSSLIDQADYEASMA-SGKMFGKPENI 382
>ASPGD|ASPL0000062209 [details] [associations]
symbol:AN0298 species:162425 "Emericella nidulans"
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 EMBL:AACD01000006 HOGENOM:HOG000212457 KO:K14404
RefSeq:XP_657902.1 ProteinModelPortal:Q5BGN2 STRING:Q5BGN2
EnsemblFungi:CADANIAT00002417 GeneID:2876077 KEGG:ani:AN0298.2
OMA:DPDRPVC OrthoDB:EOG4PG99D Uniprot:Q5BGN2
Length = 254
Score = 117 (46.2 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 28/77 (36%), Positives = 36/77 (46%)
Query: 13 PECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGL-PLRP-------GQNVCSYY 64
PEC F R+G C +C Y H + + + PPC D+G PL P + +C YY
Sbjct: 118 PECQSFSRSGYCPNGDDCLYQHVREQA-RLPPCEHYDQGFCPLGPLCAKRHVRRRLCPYY 176
Query: 65 SRYGICKFGPACKYDHP 81
G C GP C HP
Sbjct: 177 VA-GFCPEGPNCANAHP 192
>DICTYBASE|DDB_G0270148 [details] [associations]
symbol:cpsf4 "cleavage and polyadenylation
specificity factor 30 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 dictyBase:DDB_G0270148
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379
KO:K14404 RefSeq:XP_646578.1 ProteinModelPortal:Q55CA3 SMR:Q55CA3
STRING:Q55CA3 EnsemblProtists:DDB0233701 GeneID:8617548
KEGG:ddi:DDB_G0270148 InParanoid:Q55CA3 OMA:ECMYLHV
ProtClustDB:CLSZ2437480 Uniprot:Q55CA3
Length = 372
Score = 95 (38.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 25/77 (32%), Positives = 35/77 (45%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPP-----CTLSDKGLPLRPGQNVC-SYY 64
PEC +F + G+C C Y H P+ ++ + P C K + +C +YY
Sbjct: 91 PECYFFSKHGECN-NQECMYLHVNPEEKVRECPWYSRGFCKHGPKCRHKHIKKLLCENYY 149
Query: 65 SRYGICKFGPACKYDHP 81
G C GP CKY HP
Sbjct: 150 --LGFCPEGPKCKYGHP 164
Score = 32 (16.3 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 104 RQETGMAGTGNGN 116
+Q GM G N N
Sbjct: 206 QQFNGMGGNNNNN 218
>CGD|CAL0005897 [details] [associations]
symbol:YTH1 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 CGD:CAL0005897
GO:GO:0005634 GO:GO:0042493 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003723 eggNOG:COG5084 KO:K14404
EMBL:AACQ01000145 EMBL:AACQ01000144 RefSeq:XP_712810.1
RefSeq:XP_712839.1 ProteinModelPortal:Q59T36 SMR:Q59T36
STRING:Q59T36 GeneID:3645540 GeneID:3645572 KEGG:cal:CaO19.14170
KEGG:cal:CaO19.6881 Uniprot:Q59T36
Length = 215
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PLRPGQNV----CS 62
PEC ++ + G C S C Y H P+++IP+ C ++G P ++V C
Sbjct: 97 PECLFYSKNGYCTQTSECLYLHVDPQSKIPE---CLNYNQGFCSEGPNCKNRHVRRVLCP 153
Query: 63 YYSRYGICKFGPACKYDHP 81
Y YG C GP C++ HP
Sbjct: 154 LYL-YGFCPKGPECEFTHP 171
>UNIPROTKB|Q59T36 [details] [associations]
symbol:YTH1 "mRNA 3'-end-processing protein YTH1"
species:237561 "Candida albicans SC5314" [GO:0042493 "response to
drug" evidence=IMP] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 CGD:CAL0005897 GO:GO:0005634 GO:GO:0042493
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
eggNOG:COG5084 KO:K14404 EMBL:AACQ01000145 EMBL:AACQ01000144
RefSeq:XP_712810.1 RefSeq:XP_712839.1 ProteinModelPortal:Q59T36
SMR:Q59T36 STRING:Q59T36 GeneID:3645540 GeneID:3645572
KEGG:cal:CaO19.14170 KEGG:cal:CaO19.6881 Uniprot:Q59T36
Length = 215
Score = 103 (41.3 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PLRPGQNV----CS 62
PEC ++ + G C S C Y H P+++IP+ C ++G P ++V C
Sbjct: 97 PECLFYSKNGYCTQTSECLYLHVDPQSKIPE---CLNYNQGFCSEGPNCKNRHVRRVLCP 153
Query: 63 YYSRYGICKFGPACKYDHP 81
Y YG C GP C++ HP
Sbjct: 154 LYL-YGFCPKGPECEFTHP 171
>ASPGD|ASPL0000000121 [details] [associations]
symbol:AN6331 species:162425 "Emericella nidulans"
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR002483 InterPro:IPR012677
Pfam:PF01480 PROSITE:PS50102 PROSITE:PS50103 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000107 EMBL:BN001301
eggNOG:NOG280405 Gene3D:1.20.1390.10 SUPFAM:SSF101233
OrthoDB:EOG4BGD4C RefSeq:XP_663935.1 ProteinModelPortal:Q5AZE9
EnsemblFungi:CADANIAT00006655 GeneID:2871230 KEGG:ani:AN6331.2
HOGENOM:HOG000166860 OMA:SSRRRCK Uniprot:Q5AZE9
Length = 733
Score = 98 (39.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 31/96 (32%), Positives = 40/96 (41%)
Query: 38 RIPKSPPCTLSDKGLP-LRPGQ------NVCSYYSRYGICKFGPACKYDHPIHPDASAEY 90
++P PP + G P +P Q C +Y GIC G AC Y H A +
Sbjct: 207 QMPGMPPMPMPPGGGPGQQPDQMGPKSTEKCPFYETQGICYLGGACPYQHDTVAGAPKDD 266
Query: 91 GLDPPPS--FGDSTTRQETGMAGT----GNGNGSDK 120
DP S DS R + M G+ G G GSD+
Sbjct: 267 EYDPKTSGIVPDSRRRLDGSMRGSDRGRGRGRGSDR 302
Score = 34 (17.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 6 FPERPGQP 13
FP+ PG P
Sbjct: 205 FPQMPGMP 212
>POMBASE|SPAC227.08c [details] [associations]
symbol:yth1 "mRNA cleavage and polyadenylation
specificity factor complex Yth1" species:4896 "Schizosaccharomyces
pombe" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IDA] [GO:0006378 "mRNA polyadenylation"
evidence=IC] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
PomBase:SPAC227.08c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0008270 GO:GO:0006378
GO:GO:0003723 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
KO:K14404 OrthoDB:EOG4PG99D PIR:T50164 RefSeq:NP_592962.1
ProteinModelPortal:Q9UTD1 SMR:Q9UTD1 STRING:Q9UTD1
EnsemblFungi:SPAC227.08c.1 GeneID:2541506 KEGG:spo:SPAC227.08c
NextBio:20802605 Uniprot:Q9UTD1
Length = 170
Score = 97 (39.2 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 29/93 (31%), Positives = 42/93 (45%)
Query: 11 GQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTL-SDKG----------LPLRPGQN 59
G C ++LR G CK C + H N + K PPC +++G L L P +
Sbjct: 50 GSVVCKHWLR-GLCKKGEQCDFLHEYN-LKKMPPCHFYAERGWCSNGEECLYLHLDPSKQ 107
Query: 60 V--CSYYSRYGICKFGPACKYDHPIHPDASAEY 90
V C++Y+ G C GP C+ H P +Y
Sbjct: 108 VGVCAWYNM-GFCPLGPICRGKHVRKPRPCPKY 139
>CGD|CAL0004295 [details] [associations]
symbol:orf19.5334 species:5476 "Candida albicans" [GO:0003729
"mRNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006879 "cellular iron
ion homeostasis" evidence=IEA] [GO:0000956 "nuclear-transcribed
mRNA catabolic process" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 CGD:CAL0004295
GO:GO:0008270 GO:GO:0003676 EMBL:AACQ01000059 EMBL:AACQ01000058
eggNOG:COG5063 RefSeq:XP_717058.1 RefSeq:XP_717137.1
ProteinModelPortal:Q5A5R5 GeneID:3641257 GeneID:3641293
KEGG:cal:CaO19.12794 KEGG:cal:CaO19.5334 Uniprot:Q5A5R5
Length = 203
Score = 98 (39.6 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 20/68 (29%), Positives = 37/68 (54%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIP--KSPPCTLSDKGLPLRPGQNVCSYYSRYGICKF 72
C+ F++TG C Y + C++ H +N + + PP S +P C+ +++YG C++
Sbjct: 144 CASFMKTGVCPYANKCQFAHGENELKHVERPPKWRS------KP----CANWTKYGSCRY 193
Query: 73 GPACKYDH 80
G C + H
Sbjct: 194 GNRCCFKH 201
>SGD|S000006311 [details] [associations]
symbol:YTH1 "Essential RNA-binding component of cleavage and
polyadenylation factor" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006379 "mRNA
cleavage" evidence=IMP;IDA;TAS] [GO:0006378 "mRNA polyadenylation"
evidence=IDA;IMP;TAS] InterPro:IPR000571 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00356 SGD:S000006311 GO:GO:0046872
GO:GO:0008270 GO:GO:0006378 GO:GO:0003723 EMBL:BK006949
eggNOG:COG5084 GO:GO:0005847 GO:GO:0006379 EMBL:U32445
HOGENOM:HOG000212457 GeneTree:ENSGT00390000009627 KO:K14404
OMA:DPDRPVC OrthoDB:EOG4PG99D EMBL:AY558061 PIR:S59772
RefSeq:NP_015432.1 ProteinModelPortal:Q06102 SMR:Q06102
DIP:DIP-2028N IntAct:Q06102 MINT:MINT-375481 STRING:Q06102
PaxDb:Q06102 PeptideAtlas:Q06102 EnsemblFungi:YPR107C GeneID:856222
KEGG:sce:YPR107C CYGD:YPR107c NextBio:981453 Genevestigator:Q06102
GermOnline:YPR107C Uniprot:Q06102
Length = 208
Score = 96 (38.9 bits), Expect = 0.00011, P = 0.00011
Identities = 29/89 (32%), Positives = 43/89 (48%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL-PLR---PGQNVCSYY-S 65
PEC +F + G C +C+Y H P ++IPK C + G PL P +++ +
Sbjct: 93 PECVFFSKNGYCTQSPDCQYLHIDPASKIPK---CENYEMGFCPLGSSCPRRHIKKVFCQ 149
Query: 66 RY--GICKFGP-ACKYDHP--IHPDASAE 89
RY G C G C +HP I PD ++
Sbjct: 150 RYMTGFCPLGKDECDMEHPQFIIPDEGSK 178
>DICTYBASE|DDB_G0270816 [details] [associations]
symbol:DDB_G0270816 "Zinc finger CCCH
domain-containing protein 14" species:44689 "Dictyostelium
discoideum" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000571 InterPro:IPR002483
Pfam:PF01480 PROSITE:PS50103 dictyBase:DDB_G0270816
EMBL:AAFI02000005 GO:GO:0008270 GO:GO:0006397 GO:GO:0003676
eggNOG:NOG330419 RefSeq:XP_646803.1 ProteinModelPortal:Q55BM8
EnsemblProtists:DDB0202048 GeneID:8617776 KEGG:ddi:DDB_G0270816
InParanoid:Q55BM8 OMA:RKNINRD ProtClustDB:CLSZ2495641
Uniprot:Q55BM8
Length = 472
Score = 102 (41.0 bits), Expect = 0.00011, P = 0.00011
Identities = 26/80 (32%), Positives = 36/80 (45%)
Query: 7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSR 66
P++ + CSY+ C+ C YHHP + P CT DK L + P S +
Sbjct: 265 PKKSKKERCSYWPL---CRNAEACIYHHPTTQCLLFPNCTYGDKCLYIHP-----SIPCK 316
Query: 67 YGICKFGPACKYDHPIHPDA 86
+GI C Y+HP P A
Sbjct: 317 FGINCTNVDCVYNHPQRPTA 336
>UNIPROTKB|E1BV31 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AADN02023770 IPI:IPI00572429 RefSeq:XP_414800.1
UniGene:Gga.12217 Ensembl:ENSGALT00000007510 GeneID:416494
KEGG:gga:416494 NextBio:20819939 Uniprot:E1BV31
Length = 243
Score = 97 (39.2 bits), Expect = 0.00013, P = 0.00013
Identities = 36/121 (29%), Positives = 52/121 (42%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PL---RPGQNV-CS 62
PEC ++ + G+C K C + H P+++I C D+G PL R + V C
Sbjct: 94 PECYFYSKFGECSNKE-CPFLHIDPESKIKD---CPWYDRGFCKHGPLCRHRHTRRVICV 149
Query: 63 YYSRYGICKFGPACKYDHPIH--PDASAEYG-LDPPPSFGDSTTRQETGMAGTGNGNGSD 119
Y G C GP CK+ HP P + E L P T Q G+ + N N +
Sbjct: 150 NYL-VGFCPEGPTCKFMHPRFELPMGTTEQPPLPQPAQTQQKRTPQVIGVMQSQNNNTGN 208
Query: 120 K 120
+
Sbjct: 209 R 209
>FB|FBgn0029152 [details] [associations]
symbol:Mkrn1 "Makorin 1" species:7227 "Drosophila
melanogaster" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 InterPro:IPR017907 InterPro:IPR026290
PANTHER:PTHR11224 eggNOG:NOG268458 ChiTaRS:MKRN1 EMBL:AF192794
EMBL:AF192788 STRING:Q9TVX6 FlyBase:FBgn0029152 InParanoid:Q9TVX6
OrthoDB:EOG4CC2GZ Uniprot:Q9TVX6
Length = 386
Score = 100 (40.3 bits), Expect = 0.00014, P = 0.00014
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 51 GLPLRPGQNVCSYYSRYGICKFGPACKYDHPI---HPDASAEYGLD--PPPSFGDSTT 103
G+ L Q +C YY R GIC+FG C++ H + P+ + D P PS S+T
Sbjct: 13 GMALGRSQTICRYYVR-GICRFGELCRFSHDLSRGRPECEEQVATDVLPKPSTSSSST 69
>WB|WBGene00009532 [details] [associations]
symbol:ccch-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016529 "sarcoplasmic reticulum"
evidence=IDA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 GO:GO:0016529 HSSP:P22893
eggNOG:COG5063 GeneTree:ENSGT00530000063262 EMBL:Z74033 PIR:T21954
RefSeq:NP_505926.2 ProteinModelPortal:Q20155 SMR:Q20155
PaxDb:Q20155 EnsemblMetazoa:F38B7.1a GeneID:179584
KEGG:cel:CELE_F38B7.1 UCSC:F38B7.1a CTD:179584 WormBase:F38B7.1a
HOGENOM:HOG000022515 InParanoid:Q20155 OMA:PCSSNDS NextBio:906034
ArrayExpress:Q20155 Uniprot:Q20155
Length = 460
Score = 89 (36.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/78 (26%), Positives = 32/78 (41%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV--CSYYSRYGICKF 72
C ++ G C Y C+Y H + K P +P P C + + G C +
Sbjct: 204 CRSWMDHGRCNYGERCQYAH--GELEKRP--------VPRHPKYKTEACQSFHQSGYCPY 253
Query: 73 GPACKYDHPIHPDASAEY 90
GP C + H P A ++Y
Sbjct: 254 GPRCHFIHNEPPSAQSQY 271
Score = 32 (16.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 91 GLDPPPSFGDSTTRQETGMAGTG 113
G PP S DS + G G
Sbjct: 329 GESPPCSSNDSGSESPNGSFSPG 351
>SGD|S000004126 [details] [associations]
symbol:TIS11 "mRNA-binding protein expressed during iron
starvation" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0006879 "cellular iron
ion homeostasis" evidence=IMP] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 SGD:S000004126 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0003729
EMBL:BK006945 GO:GO:0006879 EMBL:X91258 EMBL:U53881 GO:GO:0000932
GO:GO:0000956 eggNOG:COG5063 GeneTree:ENSGT00530000063262
HOGENOM:HOG000001038 OrthoDB:EOG4W3WXK EMBL:S76619 EMBL:L42134
EMBL:Z73308 EMBL:AY558210 PIR:S59328 RefSeq:NP_013237.1
ProteinModelPortal:P47977 SMR:P47977 DIP:DIP-5614N IntAct:P47977
MINT:MINT-504800 STRING:P47977 EnsemblFungi:YLR136C GeneID:850827
KEGG:sce:YLR136C CYGD:YLR136c NextBio:967088 Genevestigator:P47977
GermOnline:YLR136C Uniprot:P47977
Length = 285
Score = 97 (39.2 bits), Expect = 0.00018, P = 0.00018
Identities = 31/121 (25%), Positives = 46/121 (38%)
Query: 3 VDEFPERPGQPE-CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVC 61
V E P++ + E C F G C Y S C++ H + C K +P C
Sbjct: 162 VQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSC----KNFRTKP----C 213
Query: 62 SYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGSDKN 121
+ + G C +G C + H D A Y ST++Q G G+ KN
Sbjct: 214 VNWEKLGYCPYGRRCCFKHGDDNDI-AVYVKAGTYCNVSSTSKQSDEKRSNGRGSAKKKN 272
Query: 122 I 122
+
Sbjct: 273 L 273
>TAIR|locus:2013758 [details] [associations]
symbol:AT1G29560 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0008270 GO:GO:0003676
EMBL:AC068667 eggNOG:KOG1677 IPI:IPI00527997 RefSeq:NP_174249.2
UniGene:At.73942 ProteinModelPortal:B3H4U9 PRIDE:B3H4U9
EnsemblPlants:AT1G29560.1 GeneID:839833 KEGG:ath:AT1G29560
TAIR:At1g29560 HOGENOM:HOG000064587 OMA:WRDSESR PhylomeDB:B3H4U9
ProtClustDB:CLSN2682005 Genevestigator:B3H4U9 Uniprot:B3H4U9
Length = 572
Score = 101 (40.6 bits), Expect = 0.00019, P = 0.00019
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 7 PER-PGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
P R PG+ EC + LR C+ +C+Y+HP ++P+ LP+R +C Y+
Sbjct: 215 PVRWPGE-EC-WCLR---CRNGGSCRYNHP-TQLPQE---------LPVRNRLQICRYFL 259
Query: 66 RYGICKFGPACKYDH 80
R G CKFG C + H
Sbjct: 260 R-GYCKFGSVCGFQH 273
>UNIPROTKB|H9KVA5 [details] [associations]
symbol:CPSF4L "Putative cleavage and
polyadenylation-specificity factor subunit 4-like protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103 SMART:SM00356
GO:GO:0008270 GO:GO:0003676 EMBL:AC087301 HGNC:HGNC:33632
ProteinModelPortal:H9KVA5 SMR:H9KVA5 PRIDE:H9KVA5
Ensembl:ENST00000397671 Bgee:H9KVA5 Uniprot:H9KVA5
Length = 152
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 26/77 (33%), Positives = 35/77 (45%)
Query: 13 PECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGL-----PLRPGQNV----CSY 63
PEC ++ + GDC K C + H K KS C D+G PL ++V C
Sbjct: 30 PECYFYSKFGDCSNKE-CSFLHVKPAF-KSQDCPWYDQGFCKDAGPLCKYRHVPRIMCLN 87
Query: 64 YSRYGICKFGPACKYDH 80
Y G C GP C++ H
Sbjct: 88 YL-VGFCPEGPKCQFAH 103
>UNIPROTKB|D4A905 [details] [associations]
symbol:Cpsf4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00390000009627
OMA:PLDQVTC OrthoDB:EOG4KH2VQ IPI:IPI00358639
Ensembl:ENSRNOT00000038958 Uniprot:D4A905
Length = 243
Score = 95 (38.5 bits), Expect = 0.00022, P = 0.00022
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PL----RPGQNVCS 62
PEC ++ + G+C K C + H P+++I C D+G PL R + +C
Sbjct: 94 PECYFYSKFGECSNKE-CPFLHIDPESKIKD---CPWYDRGFCKHGPLCRHRRTRRVICV 149
Query: 63 YYSRYGICKFGPACKYDHP 81
Y G C GP+CK+ HP
Sbjct: 150 NYL-VGFCPEGPSCKFMHP 167
>UNIPROTKB|C9JEV9 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0005739 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000212457 HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI00927478
ProteinModelPortal:C9JEV9 SMR:C9JEV9 STRING:C9JEV9
Ensembl:ENST00000451876 ArrayExpress:C9JEV9 Bgee:C9JEV9
Uniprot:C9JEV9
Length = 211
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL---RPGQNV-CSYYSRYGIC 70
C ++LR G CK C++ H + + K P C K PL R + V C Y G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYD-MTKMPECYFYSKFGPLCRHRHTRRVICVNYL-VGFC 124
Query: 71 KFGPACKYDHP 81
GP+CK+ HP
Sbjct: 125 PEGPSCKFMHP 135
>MGI|MGI:1861602 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor
4" species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
MGI:MGI:1861602 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 CTD:10898
GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:AK046064 EMBL:AF033201 EMBL:BC057067 IPI:IPI00309761
IPI:IPI00380450 IPI:IPI01027761 RefSeq:NP_848671.1
UniGene:Mm.196884 ProteinModelPortal:Q8BQZ5 SMR:Q8BQZ5
STRING:Q8BQZ5 PhosphoSite:Q8BQZ5 PaxDb:Q8BQZ5 PRIDE:Q8BQZ5
Ensembl:ENSMUST00000070487 GeneID:54188 KEGG:mmu:54188
UCSC:uc009amj.1 ChiTaRS:CPSF4 NextBio:311022 Bgee:Q8BQZ5
CleanEx:MM_CPSF4 Genevestigator:Q8BQZ5
GermOnline:ENSMUSG00000029625 Uniprot:Q8BQZ5
Length = 211
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL---RPGQNV-CSYYSRYGIC 70
C ++LR G CK C++ H + + K P C K PL R + V C Y G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYD-MTKMPECYFYSKFGPLCRHRHTRRVICVNYL-VGFC 124
Query: 71 KFGPACKYDHP 81
GP+CK+ HP
Sbjct: 125 PEGPSCKFMHP 135
>UNIPROTKB|E2RBK7 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0005847 GeneTree:ENSGT00390000009627
EMBL:AAEX03004276 Ensembl:ENSCAFT00000023892 Uniprot:E2RBK7
Length = 212
Score = 93 (37.8 bits), Expect = 0.00026, P = 0.00026
Identities = 26/71 (36%), Positives = 35/71 (49%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL---RPGQNV-CSYYSRYGIC 70
C ++LR G CK C++ H + + K P C K PL R + V C Y G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYD-MTKMPECYFYSKFGPLCRHRHTRRVICVNYL-VGFC 124
Query: 71 KFGPACKYDHP 81
GP+CK+ HP
Sbjct: 125 PEGPSCKFMHP 135
>UNIPROTKB|G3V789 [details] [associations]
symbol:Mkrn1 "Protein Mkrn1" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001841
InterPro:IPR000571 Pfam:PF00642 Pfam:PF13639 PROSITE:PS50089
PROSITE:PS50103 SMART:SM00184 SMART:SM00356 Prosite:PS00518
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:3.30.40.10
InterPro:IPR013083 EMBL:CH473959 InterPro:IPR017907
InterPro:IPR026290 PANTHER:PTHR11224 GeneTree:ENSGT00390000014093
OMA:YQRGCCA ProteinModelPortal:G3V789 Ensembl:ENSRNOT00000013124
Uniprot:G3V789
Length = 481
Score = 75 (31.5 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 17/66 (25%), Positives = 28/66 (42%)
Query: 60 VCSYYSRYGICKFGPACKYDH--PIHPD--ASAEYGLDPPPSFGDSTTRQETGMAGTGNG 115
VC Y+ R G C +G C+Y+H P+ + + + P P+ S +A G
Sbjct: 89 VCKYFQR-GYCVYGDRCRYEHSKPLKQEEVTATDLSAKPSPAASSSLPSGVGSLAEMNPG 147
Query: 116 NGSDKN 121
+N
Sbjct: 148 EAESRN 153
Score = 68 (29.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG 51
Q C YF+ G CK NC+Y H + P C +G
Sbjct: 58 QVTCRYFMH-GVCKEGDNCRYSHDLSDSPYGVVCKYFQRG 96
>UNIPROTKB|B7Z7B0 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000212457
HOVERGEN:HBG051108 OrthoDB:EOG4KH2VQ UniGene:Hs.489287
HGNC:HGNC:2327 EMBL:AC073063 EMBL:AK301745 IPI:IPI00924476
SMR:B7Z7B0 STRING:B7Z7B0 Ensembl:ENST00000441580 UCSC:uc011kix.2
Uniprot:B7Z7B0
Length = 191
Score = 91 (37.1 bits), Expect = 0.00034, P = 0.00034
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PL---RPGQNV-CS 62
PEC ++ + G+C K C + H P+++I C D+G PL R + V C
Sbjct: 41 PECYFYSKFGECSNKE-CPFLHIDPESKIKD---CPWYDRGFCKHGPLCRHRHTRRVICV 96
Query: 63 YYSRYGICKFGPACKYDHP 81
Y G C GP+CK+ HP
Sbjct: 97 NYL-VGFCPEGPSCKFMHP 114
>UNIPROTKB|C9K0K2 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation-specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 Pfam:PF00642 PROSITE:PS50103
SMART:SM00356 GO:GO:0008270 GO:GO:0003676 HOGENOM:HOG000212457
HGNC:HGNC:2327 EMBL:AC073063 IPI:IPI01014332
ProteinModelPortal:C9K0K2 SMR:C9K0K2 STRING:C9K0K2
Ensembl:ENST00000412686 ArrayExpress:C9K0K2 Bgee:C9K0K2
Uniprot:C9K0K2
Length = 112
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTL-------SDKGLP---LRPGQNV--CS 62
C ++LR G CK C++ H + + K P C S+K P + P + C
Sbjct: 15 CKHWLR-GLCKKGDQCEFLHEYD-MTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCP 72
Query: 63 YYSRYGICKFGPACKYDH 80
+Y R G CK GP C++ H
Sbjct: 73 WYDR-GFCKHGPLCRHRH 89
>UNIPROTKB|A6NMK7 [details] [associations]
symbol:CPSF4L "Putative cleavage and polyadenylation
specificity factor subunit 4-like protein" species:9606 "Homo
sapiens" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000571 Pfam:PF00642
PROSITE:PS50103 SMART:SM00356 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 eggNOG:COG5084 EMBL:AC087301 EMBL:BC157870
IPI:IPI00376104 RefSeq:NP_001123357.1 UniGene:Hs.534707
ProteinModelPortal:A6NMK7 SMR:A6NMK7 PhosphoSite:A6NMK7
PRIDE:A6NMK7 Ensembl:ENST00000344935 GeneID:642843 KEGG:hsa:642843
UCSC:uc010dfk.1 CTD:642843 GeneCards:GC17M071244 HGNC:HGNC:33632
HPA:HPA044047 neXtProt:NX_A6NMK7 PharmGKB:PA162382768
HOGENOM:HOG000212457 HOVERGEN:HBG051108 OMA:HVKPASK
GenomeRNAi:642843 NextBio:114229 Bgee:A6NMK7 CleanEx:HS_CPSF4L
Genevestigator:A6NMK7 Uniprot:A6NMK7
Length = 179
Score = 89 (36.4 bits), Expect = 0.00048, P = 0.00048
Identities = 26/78 (33%), Positives = 37/78 (47%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDK-G---------LPLRPG--QNVCS 62
C ++LR G CK +CK+ H + + + P C K G L ++P C
Sbjct: 68 CKHWLR-GLCKKGDHCKFLHQYD-LTRMPECYFYSKFGDCSNKECSFLHVKPAFKSQDCP 125
Query: 63 YYSRYGICKFGPACKYDH 80
+Y + G CK GP CKY H
Sbjct: 126 WYDQ-GFCKDGPLCKYRH 142
>UNIPROTKB|O19137 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642
PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343 SMART:SM00356
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084 HSSP:P47974
GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108 EMBL:U96448
IPI:IPI00715166 RefSeq:NP_776367.1 UniGene:Bt.55595
ProteinModelPortal:O19137 SMR:O19137 STRING:O19137
Ensembl:ENSBTAT00000002701 GeneID:280875 KEGG:bta:280875 CTD:10898
GeneTree:ENSGT00390000009627 InParanoid:O19137 KO:K14404
OMA:PLDQVTC OrthoDB:EOG4KH2VQ NextBio:20805014 Uniprot:O19137
Length = 243
Score = 91 (37.1 bits), Expect = 0.00060, P = 0.00060
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PL---RPGQNV-CS 62
PEC ++ + G+C K C + H P+++I C D+G PL R + V C
Sbjct: 94 PECYFYSKFGECSNKE-CPFLHIDPESKIKD---CPWYDRGFCKHGPLCRHRHTRRVICV 149
Query: 63 YYSRYGICKFGPACKYDHP 81
Y G C GP+CK+ HP
Sbjct: 150 NYL-VGFCPEGPSCKFMHP 167
>UNIPROTKB|I3LCK9 [details] [associations]
symbol:LOC100738395 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00390000009627 OMA:PLDQVTC EMBL:FP103031
Ensembl:ENSSSCT00000031676 Uniprot:I3LCK9
Length = 243
Score = 91 (37.1 bits), Expect = 0.00060, P = 0.00060
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PL---RPGQNV-CS 62
PEC ++ + G+C K C + H P+++I C D+G PL R + V C
Sbjct: 68 PECYFYSKFGECSNKE-CPFLHIDPESKIKD---CPWYDRGFCKHGPLCRHRHTRRVICV 123
Query: 63 YYSRYGICKFGPACKYDHP 81
Y G C GP+CK+ HP
Sbjct: 124 NYL-VGFCPEGPSCKFMHP 141
>RGD|620440 [details] [associations]
symbol:Cpsf4 "cleavage and polyadenylation specific factor 4"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000571 InterPro:IPR001878 Pfam:PF00098
Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158 SMART:SM00343
SMART:SM00356 RGD:620440 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 eggNOG:COG5084
HSSP:P47974 GO:GO:0005847 HOGENOM:HOG000212457 HOVERGEN:HBG051108
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OrthoDB:EOG4KH2VQ
EMBL:BC089824 IPI:IPI00553898 RefSeq:NP_001012351.1
UniGene:Rn.104788 ProteinModelPortal:Q5FVR7 SMR:Q5FVR7
Ensembl:ENSRNOT00000042474 GeneID:304277 KEGG:rno:304277
InParanoid:Q5FVR7 NextBio:652764 ArrayExpress:Q5FVR7
Genevestigator:Q5FVR7 GermOnline:ENSRNOG00000025217 Uniprot:Q5FVR7
Length = 243
Score = 91 (37.1 bits), Expect = 0.00060, P = 0.00060
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PL---RPGQNV-CS 62
PEC ++ + G+C K C + H P+++I C D+G PL R + V C
Sbjct: 94 PECYFYSKFGECSNKE-CPFLHIDPESKIKD---CPWYDRGFCKHGPLCRHRHTRRVICV 149
Query: 63 YYSRYGICKFGPACKYDHP 81
Y G C GP+CK+ HP
Sbjct: 150 NYL-VGFCPEGPSCKFMHP 167
>UNIPROTKB|J9P398 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
InterPro:IPR001878 Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103
PROSITE:PS50158 SMART:SM00343 SMART:SM00356 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:10898 GeneTree:ENSGT00390000009627 KO:K14404 OMA:PLDQVTC
EMBL:AAEX03004276 RefSeq:XP_850149.1 ProteinModelPortal:J9P398
Ensembl:ENSCAFT00000043832 GeneID:489859 KEGG:cfa:489859
Uniprot:J9P398
Length = 269
Score = 91 (37.1 bits), Expect = 0.00073, P = 0.00073
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PL---RPGQNV-CS 62
PEC ++ + G+C K C + H P+++I C D+G PL R + V C
Sbjct: 94 PECYFYSKFGECSNKE-CPFLHIDPESKIKD---CPWYDRGFCKHGPLCRHRHTRRVICV 149
Query: 63 YYSRYGICKFGPACKYDHP 81
Y G C GP+CK+ HP
Sbjct: 150 NYL-VGFCPEGPSCKFMHP 167
>UNIPROTKB|O95639 [details] [associations]
symbol:CPSF4 "Cleavage and polyadenylation specificity
factor subunit 4" species:9606 "Homo sapiens" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0019048
"virus-host interaction" evidence=TAS] [GO:0019054 "modulation by
virus of host cellular process" evidence=TAS] [GO:0019058 "viral
infectious cycle" evidence=TAS] [GO:0046778 "modification by virus
of host mRNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000571 InterPro:IPR001878
Pfam:PF00098 Pfam:PF00642 PROSITE:PS50103 PROSITE:PS50158
SMART:SM00343 SMART:SM00356 GO:GO:0005739 Reactome:REACT_116125
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003723
EMBL:CH236956 EMBL:CH471091 GO:GO:0019058 Gene3D:4.10.60.10
SUPFAM:SSF57756 eggNOG:COG5084 GO:GO:0005847 HOGENOM:HOG000212457
HOVERGEN:HBG051108 CTD:10898 KO:K14404 OMA:PLDQVTC
OrthoDB:EOG4KH2VQ EMBL:U79569 EMBL:CR542161 EMBL:EF191081
EMBL:BC003101 EMBL:BC050738 IPI:IPI00009137 IPI:IPI00029707
IPI:IPI00375469 RefSeq:NP_001075028.1 RefSeq:NP_006684.1
UniGene:Hs.489287 PDB:2D9N PDB:2RHK PDBsum:2D9N PDBsum:2RHK
ProteinModelPortal:O95639 SMR:O95639 DIP:DIP-48675N IntAct:O95639
MINT:MINT-1429837 STRING:O95639 PhosphoSite:O95639 PaxDb:O95639
PRIDE:O95639 DNASU:10898 Ensembl:ENST00000292476
Ensembl:ENST00000436336 GeneID:10898 KEGG:hsa:10898 UCSC:uc003uqi.3
UCSC:uc003uqj.3 UCSC:uc003uqk.3 GeneCards:GC07P099036
HGNC:HGNC:2327 HPA:HPA049094 MIM:603052 neXtProt:NX_O95639
PharmGKB:PA26844 InParanoid:O95639 PhylomeDB:O95639
EvolutionaryTrace:O95639 GenomeRNAi:10898 NextBio:41385
ArrayExpress:O95639 Bgee:O95639 CleanEx:HS_CPSF4
Genevestigator:O95639 GermOnline:ENSG00000160917 GO:GO:0046778
Uniprot:O95639
Length = 269
Score = 91 (37.1 bits), Expect = 0.00073, P = 0.00073
Identities = 27/79 (34%), Positives = 39/79 (49%)
Query: 13 PECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL----PL---RPGQNV-CS 62
PEC ++ + G+C K C + H P+++I C D+G PL R + V C
Sbjct: 94 PECYFYSKFGECSNKE-CPFLHIDPESKIKD---CPWYDRGFCKHGPLCRHRHTRRVICV 149
Query: 63 YYSRYGICKFGPACKYDHP 81
Y G C GP+CK+ HP
Sbjct: 150 NYL-VGFCPEGPSCKFMHP 167
>UNIPROTKB|F1NHU3 [details] [associations]
symbol:ZC3H3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0005634
GO:GO:0008270 GO:GO:0006378 GO:GO:0003676
GeneTree:ENSGT00390000009627 GO:GO:0016973 GO:GO:0010793
EMBL:AADN02037362 EMBL:AADN02037363 IPI:IPI00580233
Ensembl:ENSGALT00000028087 OMA:CNRGESC Uniprot:F1NHU3
Length = 377
Score = 93 (37.8 bits), Expect = 0.00077, P = 0.00077
Identities = 36/95 (37%), Positives = 46/95 (48%)
Query: 13 PECSYFLRTGDCKYKSNCKYHHPK-NRIPKSPPCTLSDKGL-PL-----RPGQNVCSYYS 65
P CSYFL+ G C SNC Y H +R K+ C KG P+ + VC ++
Sbjct: 169 PVCSYFLK-GICN-NSNCPYSHVYVSR--KAEVCQDFLKGYCPMGEKCKKKHTLVCPDFA 224
Query: 66 RYGICKFGPACKYDHPI---H-P-DASAEYGLDPP 95
+ GIC G CK HP H P + + E G DPP
Sbjct: 225 KKGICPRGACCKLLHPKKKRHSPGNCAGEDG-DPP 258
>UNIPROTKB|E2RBM0 [details] [associations]
symbol:CPSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000571
Pfam:PF00642 PROSITE:PS50103 SMART:SM00356 GO:GO:0008270
GO:GO:0003676 GeneTree:ENSGT00390000009627 EMBL:AAEX03004276
Ensembl:ENSCAFT00000023887 NextBio:20862973 Uniprot:E2RBM0
Length = 164
Score = 88 (36.0 bits), Expect = 0.00092, P = 0.00092
Identities = 25/78 (32%), Positives = 37/78 (47%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTL-------SDKGLP---LRPGQNV--CS 62
C ++LR G CK C++ H + + K P C S+K P + P + C
Sbjct: 66 CKHWLR-GLCKKGDQCEFLHEYD-MTKMPECYFYSKFGECSNKECPFLHIDPESKIKDCP 123
Query: 63 YYSRYGICKFGPACKYDH 80
+Y R G CK GP C++ H
Sbjct: 124 WYDR-GFCKHGPLCRHRH 140
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.139 0.460 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 122 122 0.00091 102 3 12 22 0.43 31
29 0.49 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 485 (52 KB)
Total size of DFA: 106 KB (2074 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.62u 0.18s 11.80t Elapsed: 00:00:00
Total cpu time: 11.63u 0.18s 11.81t Elapsed: 00:00:00
Start: Fri May 10 23:18:40 2013 End: Fri May 10 23:18:40 2013