BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033320
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii
Au- Rich Element By The Tandem Zinc Finger Domain Of
Tis11d
Length = 70
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP--GQNVCSYYSRYGICKF 72
C F +G CKY C++ H + + + L P +C + G C +
Sbjct: 9 CRPFEESGTCKYGEKCQFAHGFHEL----------RSLTRHPKYKTELCRTFHTIGFCPY 58
Query: 73 GPACKYDH 80
GP C + H
Sbjct: 59 GPRCHFIH 66
>pdb|2FC6|A Chain A, Solution Structure Of The Zf-Ccch Domain Of Target Of
Egr1, Member 1 (Nuclear)
Length = 50
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 59 NVCSYYSRYGICKFGPACKYDHPI 82
++C +S YG C GP C H I
Sbjct: 21 SICDNFSAYGWCPLGPQCPQSHDI 44
>pdb|1OF5|A Chain A, Crystal Structure Of Mex67-mtr2
Length = 221
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHH 34
F E G+PE +TG Y+ N +Y+H
Sbjct: 135 FFEETGKPELESNKKTGKNNYQKNRRYNH 163
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 54 LRPGQNVCSYYSRYGICKFGPA-----CKYDHPIHPDASAEYGLDPPPSFGDSTTRQETG 108
L PG V Y C FGP C ++ A GLD PP DS
Sbjct: 379 LAPGGKVKEYVVG---CAFGPGINVEMCMLKRRMNAPARTTTGLDTPPETDDSEGPGPGS 435
Query: 109 MAGTGNG 115
AG+ +G
Sbjct: 436 SAGSDDG 442
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
Length = 167
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHH 34
+P C +FL G C++K NC++ H
Sbjct: 70 YPTHKSLKPCPFFLE-GKCRFKENCRFSH 97
>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|B Chain B, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|C Chain C, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|D Chain D, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
Length = 372
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 68 GICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTG 113
G C +G AC YD+ PD ++ +D P G T TG++G G
Sbjct: 300 GCCLYGAACTYDNS--PD--EDFIIDTLP--GHDNTLLITGLSGHG 339
>pdb|3P3L|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
pdb|3P3L|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Wildtype) From Streptomyces Thioluteus
Length = 406
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 92 LDPPPSFGDSTTRQETGMAG 111
LDPP G+ T R E G+AG
Sbjct: 376 LDPPQIAGEITWRHELGVAG 395
>pdb|3P3O|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Ntermii) From Streptomyces Thioluteus
pdb|3P3X|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3X|B Chain B, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh (Nterm- Aurh-I) From Streptomyces Thioluteus
pdb|3P3Z|A Chain A, Crystal Structure Of The Cytochrome P450 Monooxygenase
Aurh From Streptomyces Thioluteus In Complex With
Ancymidol
Length = 416
Score = 25.4 bits (54), Expect = 8.9, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 92 LDPPPSFGDSTTRQETGMAG 111
LDPP G+ T R E G+AG
Sbjct: 386 LDPPQIAGEITWRHELGVAG 405
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.139 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,841,386
Number of Sequences: 62578
Number of extensions: 201579
Number of successful extensions: 203
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 189
Number of HSP's gapped (non-prelim): 15
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)