BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033320
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9STM4|C3H43_ARATH Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis
thaliana GN=At3g48440 PE=1 SV=1
Length = 448
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
M +EFPERP QPECSY+++TGDCK+K NCKYHHPKNR+PK PP L+DKGLPLRP QN+
Sbjct: 338 MPAEEFPERPDQPECSYYMKTGDCKFKFNCKYHHPKNRLPKLPPYALNDKGLPLRPDQNI 397
Query: 61 CSYYSRYGICKFGPACKYDHPIHPDASAE 89
C+YYSRYGICKFGPAC++DH + P S E
Sbjct: 398 CTYYSRYGICKFGPACRFDHSVQPPYSTE 426
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 11 GQPECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYG 68
G +C Y+ RTG CKY C+++H PK+ + +P L+ GLPLRPG+ C YY R G
Sbjct: 160 GLIDCKYYFRTGGCKYGETCRFNHTIPKSGLASAP--ELNFLGLPLRPGEVECPYYMRNG 217
Query: 69 ICKFGPACKYDHPIHPDASAEYGLDPPPSFGDS 101
CK+G CK++ HPD + G D P G++
Sbjct: 218 SCKYGAECKFN---HPDPTTIGGTDSPSFRGNN 247
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 48 SDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPI 82
S+ P+RPG CS+Y R G CKFG +CK++HP+
Sbjct: 103 SENVYPVRPGAEDCSFYMRTGSCKFGSSCKFNHPL 137
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHP 35
P RPG+ EC Y++R G CKY + CK++HP
Sbjct: 201 LPLRPGEVECPYYMRNGSCKYGAECKFNHP 230
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/119 (54%), Positives = 83/119 (69%), Gaps = 12/119 (10%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
M V+EFPERP QPEC+Y+L+TGDCK+K CKYHHPKNR+PK + +DKGLPLRP Q++
Sbjct: 326 MSVEEFPERPDQPECTYYLKTGDCKFKYKCKYHHPKNRLPKQAAFSFNDKGLPLRPDQSM 385
Query: 61 CSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTGNGNGSD 119
C++YSRYGICKFGPAC++DH I PP+F S+++ NGN D
Sbjct: 386 CTHYSRYGICKFGPACRFDHSI------------PPTFSPSSSQTVEARQVGANGNEDD 432
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
DE E P EC Y+ RTG CKY +C++ H K + L+ GLP+RPG+ C +
Sbjct: 143 DEDVENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPF 202
Query: 64 YSRYGICKFGPACKYDHPIHPDASAEYGLDPP 95
Y R G CKFG CK++ HPD +A G+D P
Sbjct: 203 YMRNGSCKFGSDCKFN---HPDPTAIGGVDSP 231
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 53 PLRPGQNVCSYYSRYGICKFGPACKYDHPI 82
P+RP CS+Y R G CK+G +CK++HP+
Sbjct: 99 PVRPDSEDCSFYMRTGSCKYGSSCKFNHPV 128
>sp|Q2R4J4|C3H63_ORYSJ Zinc finger CCCH domain-containing protein 63 OS=Oryza sativa
subsp. japonica GN=Os11g0472000 PE=2 SV=2
Length = 444
Score = 126 bits (317), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 75/100 (75%), Gaps = 4/100 (4%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FPERP QPEC ++++TGDCK+ + CK+HHPK RI +P C LS GLPLRPG+ +C++YS
Sbjct: 306 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYS 365
Query: 66 RYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQ 105
RYGICKFGP CK+DHP+ + YGL P+ GD + R+
Sbjct: 366 RYGICKFGPNCKFDHPM---GTVMYGLATSPT-GDVSARR 401
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 52/77 (67%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
E+P+R GQPEC Y+L+TG CK+ + CK+HHP+ + + L+ G PLRP + C+YY
Sbjct: 97 EYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYY 156
Query: 65 SRYGICKFGPACKYDHP 81
R G CKFG CK+ HP
Sbjct: 157 LRTGQCKFGSTCKFHHP 173
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-LPLRPGQN 59
M +PER G+P+CSY++RTG C++ CK++HP +R K KG P R GQ
Sbjct: 48 MEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADR--KMAVAAARMKGEYPQRIGQP 105
Query: 60 VCSYYSRYGICKFGPACKYDHPIHPDASA 88
C YY + G CKFG CK+ HP A A
Sbjct: 106 ECQYYLKTGTCKFGATCKFHHPREKAAIA 134
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTL-SDKGLPLRPGQNVCS 62
+P RP + EC+Y+LRTG CK+ S CK+HHP+ P T+ + +G PGQ+V S
Sbjct: 144 YPLRPNEKECAYYLRTGQCKFGSTCKFHHPQ------PSNTMVAVRGSVYSPGQSVTS 195
>sp|Q3ECU8|C3H13_ARATH Zinc finger CCCH domain-containing protein 13 OS=Arabidopsis
thaliana GN=At1g48195 PE=4 SV=1
Length = 82
Score = 124 bits (310), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 55/80 (68%), Positives = 66/80 (82%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
M ++FPERPG+PECSY+LRTG+C K NCKYHHPKN P P CTL+DKGLPLRPGQ +
Sbjct: 1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHPKNITPSEPQCTLNDKGLPLRPGQAI 60
Query: 61 CSYYSRYGICKFGPACKYDH 80
C +YSR+GIC+ GP CK+DH
Sbjct: 61 CPHYSRFGICRSGPTCKFDH 80
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 47 LSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
+S++ P RPG+ CSYY R G C CKY HP
Sbjct: 1 MSEEKFPERPGEPECSYYLRTGNCYLKQNCKYHHP 35
>sp|Q8L7N8|C3H57_ARATH Zinc finger CCCH domain-containing protein 57 OS=Arabidopsis
thaliana GN=ZFN3 PE=2 SV=2
Length = 375
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+ FPERPGQPEC ++++TGDCK+ + CK+HHP++R P C LS GLPLRPG+ +C +
Sbjct: 238 NVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSVGLPLRPGEPLCVF 297
Query: 64 YSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMA 110
YSRYGICKFGP+CK+DHP+ P PS S+ QET +
Sbjct: 298 YSRYGICKFGPSCKFDHPMRVFTYNNNTASPSPS---SSLHQETAIT 341
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
E+PER GQPEC ++L+TG CK+ CK+HHP+N+ +++ PLRP ++ CSY+
Sbjct: 83 EYPERIGQPECEFYLKTGTCKFGVTCKFHHPRNKAGIDGSVSVNVLSYPLRPNEDDCSYF 142
Query: 65 SRYGICKFGPACKYDHP 81
R G CKFG CK++HP
Sbjct: 143 LRIGQCKFGGTCKFNHP 159
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 1 MLVD-EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-LPLRPGQ 58
M VD +PER G+P+C+Y++RTG C++ S C+++HP +R K T KG P R GQ
Sbjct: 33 MGVDGSYPERHGEPDCAYYIRTGLCRFGSTCRFNHPHDR--KLVIATARIKGEYPERIGQ 90
Query: 59 NVCSYYSRYGICKFGPACKYDHP 81
C +Y + G CKFG CK+ HP
Sbjct: 91 PECEFYLKTGTCKFGVTCKFHHP 113
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 3 VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL 54
V +P RP + +CSYFLR G CK+ CK++HP+ +S +S +G P+
Sbjct: 127 VLSYPLRPNEDDCSYFLRIGQCKFGGTCKFNHPQT---QSTNLMVSVRGSPV 175
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%)
Query: 34 HPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
H N +P + P RPGQ C +Y + G CKFG CK+ HP
Sbjct: 222 HSGNSVPLGFYALPRENVFPERPGQPECQFYMKTGDCKFGTVCKFHHP 269
>sp|Q2QT65|C3H66_ORYSJ Zinc finger CCCH domain-containing protein 66 OS=Oryza sativa
subsp. japonica GN=Os12g0405100 PE=2 SV=1
Length = 454
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 64/77 (83%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FPERP QPEC ++++TGDCK+ + CK+HHPK R+ +P C L+ GLPLRPG+ VC++YS
Sbjct: 315 FPERPDQPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALNSLGLPLRPGEPVCTFYS 374
Query: 66 RYGICKFGPACKYDHPI 82
RYGICKFGP CK+DHP+
Sbjct: 375 RYGICKFGPNCKFDHPM 391
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
E+P R GQPEC Y+L+TG CK+ + CK+HHP+ + + L+ G P+RP + C+YY
Sbjct: 107 EYPYRVGQPECQYYLKTGTCKFGATCKFHHPREKAALANRVQLNVLGYPMRPNEKECAYY 166
Query: 65 SRYGICKFGPACKYDHP 81
R G CKF CK+ HP
Sbjct: 167 LRTGQCKFASTCKFHHP 183
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
+PER G+P+CSY++RTG C++ CK++HP NR ++ + P R GQ C YY
Sbjct: 63 YPERIGEPDCSYYMRTGLCRFGMTCKFNHPPNRKLAVAAARMNGE-YPYRVGQPECQYYL 121
Query: 66 RYGICKFGPACKYDHPIHPDASA 88
+ G CKFG CK+ HP A A
Sbjct: 122 KTGTCKFGATCKFHHPREKAALA 144
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 3 VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPK 36
V +P RP + EC+Y+LRTG CK+ S CK+HHP+
Sbjct: 151 VLGYPMRPNEKECAYYLRTGQCKFASTCKFHHPQ 184
>sp|Q8GXX7|C3H33_ARATH Zinc finger CCCH domain-containing protein 33 OS=Arabidopsis
thaliana GN=ZFN1 PE=1 SV=1
Length = 397
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 64/78 (82%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FPERPGQPEC ++++TGDCK+ + CK+HHP++R P C LS GLPLRPG+ +C +Y+
Sbjct: 271 FPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAPPPDCLLSSIGLPLRPGEPLCVFYT 330
Query: 66 RYGICKFGPACKYDHPIH 83
RYGICKFGP+CK+DHP+
Sbjct: 331 RYGICKFGPSCKFDHPMR 348
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
E+PER GQPEC Y+L+TG CK+ CK+HHP+N+ + +L+ G PLR + C+Y+
Sbjct: 81 EYPERIGQPECEYYLKTGTCKFGVTCKFHHPRNKAGIAGRVSLNMLGYPLRSNEVDCAYF 140
Query: 65 SRYGICKFGPACKYDHP 81
R G CKFG CK++HP
Sbjct: 141 LRTGHCKFGGTCKFNHP 157
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-LPLRPGQN 59
M +PERPG+P+CSY++RTG C++ S C+++HP++R + T +G P R GQ
Sbjct: 32 METGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHPRDR--ELVIATARMRGEYPERIGQP 89
Query: 60 VCSYYSRYGICKFGPACKYDHP 81
C YY + G CKFG CK+ HP
Sbjct: 90 ECEYYLKTGTCKFGVTCKFHHP 111
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 46 TLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
T+ P RPG+ CSYY R G+C+FG C+++HP
Sbjct: 31 TMETGSYPERPGEPDCSYYIRTGLCRFGSTCRFNHP 66
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPK 36
+P R + +C+YFLRTG CK+ CK++HP+
Sbjct: 128 YPLRSNEVDCAYFLRTGHCKFGGTCKFNHPQ 158
>sp|Q9SWF9|ZFNL_PEA Zinc finger CCCH domain-containing protein ZFN-like OS=Pisum
sativum PE=2 SV=1
Length = 417
Score = 116 bits (290), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 63/77 (81%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FPERP QPEC ++++TGDCK+ + C++HHP+ R +P C LS GLPLRPG+ +C +YS
Sbjct: 275 FPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIPAPDCVLSPIGLPLRPGEPLCVFYS 334
Query: 66 RYGICKFGPACKYDHPI 82
RYGICKFGP+CK+DHP+
Sbjct: 335 RYGICKFGPSCKFDHPM 351
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 53/77 (68%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
EFPER GQPEC Y+L+TG CK+ + C++HHPK++ + L+ G PLRP ++ +YY
Sbjct: 71 EFPERLGQPECQYYLKTGTCKFGATCRFHHPKDKAGVAGRVALNILGYPLRPNESERAYY 130
Query: 65 SRYGICKFGPACKYDHP 81
R G CKFG CK+ HP
Sbjct: 131 LRTGQCKFGNTCKFHHP 147
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-LPLRPGQNVCSYY 64
+PE PG+P+CSY++RTG C++ + C+++HP NR K T KG P R GQ C YY
Sbjct: 27 YPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNR--KLAIATARMKGEFPERLGQPECQYY 84
Query: 65 SRYGICKFGPACKYDHP 81
+ G CKFG C++ HP
Sbjct: 85 LKTGTCKFGATCRFHHP 101
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPK 36
+P RP + E +Y+LRTG CK+ + CK+HHP+
Sbjct: 118 YPLRPNESERAYYLRTGQCKFGNTCKFHHPQ 148
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 46 TLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
T+ P PG+ CSYY R G+C+FG C+++HP
Sbjct: 21 TMESGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHP 56
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 49 DKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
D P RP Q C +Y + G CKFG C++ HP
Sbjct: 272 DNIFPERPDQPECQFYMKTGDCKFGAVCRFHHP 304
>sp|Q5JLB5|C3H12_ORYSJ Zinc finger CCCH domain-containing protein 12 OS=Oryza sativa
subsp. japonica GN=Os01g0917400 PE=2 SV=2
Length = 439
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/79 (60%), Positives = 61/79 (77%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+ FPERP QPEC Y+++TGDCK+ + CK+HHP+ R +P C LS GLPLRPG+ +C +
Sbjct: 327 NVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKF 386
Query: 64 YSRYGICKFGPACKYDHPI 82
YSRYGICKFG CK+DHP
Sbjct: 387 YSRYGICKFGANCKFDHPT 405
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 55/87 (63%)
Query: 2 LVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVC 61
+ E+PER GQPEC Y+L+TG CK+ CK+HHP+ + + L+ G PLRP + C
Sbjct: 118 MKGEYPERMGQPECQYYLKTGTCKFGPTCKFHHPREKAGIAGRVQLNTLGYPLRPSEKEC 177
Query: 62 SYYSRYGICKFGPACKYDHPIHPDASA 88
+YY + G CK+G CK+ HP +A A
Sbjct: 178 AYYLKTGQCKYGNTCKFHHPELFNAMA 204
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
+PER G+P+C+Y+LRTG C++ +C+++HP++R + + P R GQ C YY
Sbjct: 77 YPERSGEPDCTYYLRTGLCRFGMSCRFNHPQDRNLAIASARMKGE-YPERMGQPECQYYL 135
Query: 66 RYGICKFGPACKYDHP 81
+ G CKFGP CK+ HP
Sbjct: 136 KTGTCKFGPTCKFHHP 151
>sp|Q84W91|C3H32_ARATH Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis
thaliana GN=At2g47850 PE=2 SV=2
Length = 468
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 60/79 (75%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
FPERPG+PEC Y+L+TGDCK+ ++CK+HHP++R+P C LS GLPLRPG C++
Sbjct: 284 QAFPERPGEPECQYYLKTGDCKFGTSCKFHHPRDRVPPRANCVLSPIGLPLRPGVQRCTF 343
Query: 64 YSRYGICKFGPACKYDHPI 82
Y + G CKFG CK+DHP+
Sbjct: 344 YVQNGFCKFGSTCKFDHPM 362
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 51/77 (66%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
++PER G+P C ++L+TG CK+ ++CK+HHPKN L+ G P+R G N CSYY
Sbjct: 86 QYPERFGEPPCQFYLKTGTCKFGASCKFHHPKNAGGSMSHVPLNIYGYPVREGDNECSYY 145
Query: 65 SRYGICKFGPACKYDHP 81
+ G CKFG CK+ HP
Sbjct: 146 LKTGQCKFGITCKFHHP 162
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-LPLRPGQNVCS 62
D +PERPG P+C+Y++RTG C Y + C+Y+HP++R S T+ G P R G+ C
Sbjct: 40 DSYPERPGAPDCAYYMRTGVCGYGNRCRYNHPRDR--ASVEATVRATGQYPERFGEPPCQ 97
Query: 63 YYSRYGICKFGPACKYDHP 81
+Y + G CKFG +CK+ HP
Sbjct: 98 FYLKTGTCKFGASCKFHHP 116
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 49 DKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
++ P RPG+ C YY + G CKFG +CK+ HP
Sbjct: 283 EQAFPERPGEPECQYYLKTGDCKFGTSCKFHHP 315
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 47 LSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
L P RPG C+YY R G+C +G C+Y+HP
Sbjct: 37 LGSDSYPERPGAPDCAYYMRTGVCGYGNRCRYNHP 71
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
thaliana GN=At3g06410 PE=2 SV=2
Length = 462
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 60/76 (78%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
EFP+RP QPEC YF+RTGDCK+ S+C+YHHP + +P LS GLPLRPG C+++
Sbjct: 303 EFPQRPDQPECQYFMRTGDCKFGSSCRYHHPVDAVPPKTGIVLSSIGLPLRPGVAQCTHF 362
Query: 65 SRYGICKFGPACKYDH 80
+++GICKFGPACK+DH
Sbjct: 363 AQHGICKFGPACKFDH 378
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIP--KSPPCTLSDKGLPLRPGQNVCSY 63
PER G P C +F+RTG CK+ ++CKYHHP+ P +LS G PLRPG+ CSY
Sbjct: 97 LPERMGHPVCQHFMRTGTCKFGASCKYHHPRQGGGGGSVAPVSLSYLGYPLRPGEKECSY 156
Query: 64 YSRYGICKFGPACKYDHPI 82
Y R G CKFG C+++HP+
Sbjct: 157 YLRTGQCKFGLTCRFNHPV 175
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+ +PERP +P+C Y+LRTG C Y S C+++HP++R LP R G VC +
Sbjct: 49 ESYPERPDEPDCIYYLRTGVCGYGSRCRFNHPRDRGAVIGGVRGEAGALPERMGHPVCQH 108
Query: 64 YSRYGICKFGPACKYDHP 81
+ R G CKFG +CKY HP
Sbjct: 109 FMRTGTCKFGASCKYHHP 126
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 48 SDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPI 82
+ K P RP Q C Y+ R G CKFG +C+Y HP+
Sbjct: 300 TSKEFPQRPDQPECQYFMRTGDCKFGSSCRYHHPV 334
>sp|Q2QTY2|C3H65_ORYSJ Zinc finger CCCH domain-containing protein 65 OS=Oryza sativa
subsp. japonica GN=Os12g0278800 PE=2 SV=1
Length = 529
Score = 107 bits (268), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+E+PERPGQPEC +F+++G CK++ CKYHHP++ +P P LS GLP++P Q VC+Y
Sbjct: 428 EEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSPVP--PAGALSPLGLPIKPDQPVCTY 485
Query: 64 YSRYGICKFGPACKYDHPIH 83
Y RYG+CKFGPAC Y+HP +
Sbjct: 486 YGRYGVCKFGPACAYNHPFN 505
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPK--SPPCTLSDKGLPLRPGQNVCSYYSRYGI 69
Q EC Y+ G CK+ CKY H + K + L+ GLPLRPG+ C YY R G
Sbjct: 240 QEECKYYSTPGGCKFGKACKYLHRDGKEGKTDAEKVDLNFLGLPLRPGEKECPYYMRTGS 299
Query: 70 CKFGPACKYDHP 81
CK+ CK+ HP
Sbjct: 300 CKYATNCKFHHP 311
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHP 35
P RPG+ EC Y++RTG CKY +NCK+HHP
Sbjct: 282 LPLRPGEKECPYYMRTGSCKYATNCKFHHP 311
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 25/33 (75%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNR 38
FP RPG+P+C+Y+++ G C++ CK++HP +
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHPARK 137
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 52 LPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
P RPG+ C+YY ++G C+FG CK++HP
Sbjct: 105 FPRRPGEPDCTYYVKFGSCRFGMKCKFNHP 134
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQ 58
P +P QP C+Y+ R G CK+ C Y+HP N P + G PL P Q
Sbjct: 474 LPIKPDQPVCTYYGRYGVCKFGPACAYNHPFNFSP------VPAAGPPLLPAQ 520
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 33 HHPKNRIPKSP-PCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHP 84
+HP + P+ P + + P RPGQ C ++ + G CKF CKY HP P
Sbjct: 410 NHPMYKAPEIPGHQQVPSEEYPERPGQPECQHFVKSGFCKFRMKCKYHHPRSP 462
>sp|Q5NAV3|C3H5_ORYSJ Zinc finger CCCH domain-containing protein 5 OS=Oryza sativa subsp.
japonica GN=Os01g0257400 PE=2 SV=1
Length = 466
Score = 105 bits (263), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FP RPGQPEC Y+L+TG CK+ S CKYHHP+ C LS GLPLRPG C+YY+
Sbjct: 296 FPARPGQPECQYYLKTGSCKFGSACKYHHPQYLNTPKSNCMLSPLGLPLRPGSQPCAYYT 355
Query: 66 RYGICKFGPACKYDHPI 82
++G CKFGP CK+DHP+
Sbjct: 356 QHGFCKFGPTCKFDHPM 372
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
E+PERPGQP C Y+++ G CK+ SNCKY HP+ ++ L+ G PLR G+ C+YY
Sbjct: 97 EYPERPGQPVCEYYMKNGTCKFGSNCKYDHPREGSVQA--VMLNSSGYPLRSGEKDCTYY 154
Query: 65 SRYGICKFGPACKYDHP 81
+ G CKFG CK+ HP
Sbjct: 155 VKTGHCKFGSTCKFHHP 171
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 10/88 (11%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-------LP 53
+ PERPG+ +C Y+LRTG C Y NC+Y+HP++R + L+ G P
Sbjct: 43 VAAGRLPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAA---VLNGGGKTTHSAEYP 99
Query: 54 LRPGQNVCSYYSRYGICKFGPACKYDHP 81
RPGQ VC YY + G CKFG CKYDHP
Sbjct: 100 ERPGQPVCEYYMKNGTCKFGSNCKYDHP 127
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 21/33 (63%)
Query: 49 DKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
+ P RPGQ C YY + G CKFG ACKY HP
Sbjct: 293 EPAFPARPGQPECQYYLKTGSCKFGSACKYHHP 325
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 52 LPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASA 88
LP RPG+ C YY R G C +G C+Y+HP A+A
Sbjct: 48 LPERPGEADCVYYLRTGACGYGENCRYNHPRDRAAAA 84
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRP 56
P RPG C+Y+ + G CK+ CK+ HP + SP + S LP+ P
Sbjct: 342 LPLRPGSQPCAYYTQHGFCKFGPTCKFDHPMGTLSYSPSAS-SITDLPIAP 391
>sp|Q6NPN3|C3H58_ARATH Zinc finger CCCH domain-containing protein 58 OS=Arabidopsis
thaliana GN=At5g18550 PE=2 SV=1
Length = 465
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/76 (59%), Positives = 59/76 (77%), Gaps = 3/76 (3%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPC-TLSDKGLPLRPGQNVCSYY 64
FP+RP QPEC YF+RTGDCK+ ++C++HHP SP TLS GLPLRPG C+++
Sbjct: 297 FPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEA--ASPEASTLSHIGLPLRPGAVPCTHF 354
Query: 65 SRYGICKFGPACKYDH 80
+++GICKFGPACK+DH
Sbjct: 355 AQHGICKFGPACKFDH 370
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKN--RIPKSPPCTLSDKGLPLRPGQNVCS 62
EFPER GQP C +F+RTG CK+ ++CKYHHP+ P +L+ G PLRPG+ CS
Sbjct: 93 EFPERMGQPVCQHFMRTGTCKFGASCKYHHPRQGGGGDSVTPVSLNYMGFPLRPGEKECS 152
Query: 63 YYSRYGICKFGPACKYDHPIHPDASA 88
Y+ R G CKFG C+Y HP+ P A
Sbjct: 153 YFMRTGQCKFGSTCRYHHPVPPGVQA 178
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 49/78 (62%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+ FPERP +P+C Y+LRTG C Y S C+++HP+NR P P R GQ VC +
Sbjct: 46 ETFPERPDEPDCIYYLRTGVCGYGSRCRFNHPRNRAPVLGGLRTEAGEFPERMGQPVCQH 105
Query: 64 YSRYGICKFGPACKYDHP 81
+ R G CKFG +CKY HP
Sbjct: 106 FMRTGTCKFGASCKYHHP 123
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 40 PKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIH---PDAS 87
P S + ++ P RP Q C Y+ R G CKFG +C++ HP+ P+AS
Sbjct: 285 PSSTGVSNKEQTFPQRPEQPECQYFMRTGDCKFGTSCRFHHPMEAASPEAS 335
>sp|Q5NAW2|C3H6_ORYSJ Zinc finger CCCH domain-containing protein 6 OS=Oryza sativa subsp.
japonica GN=Os01g0258700 PE=2 SV=2
Length = 476
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
FPERPGQP+C Y++RTGDCK+ + CKYHHP+ ++ LPLRPG C+YY+
Sbjct: 304 FPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYA 363
Query: 66 RYGICKFGPACKYDHPI 82
+ G C++G ACKYDHP+
Sbjct: 364 QNGYCRYGVACKYDHPM 380
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 1/91 (1%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYY 64
++PER GQP C Y+++TG CK+ +NCKYHHPK P L++ G P+R G+ CSYY
Sbjct: 104 DYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDG-AVLPVMLNNSGFPIRLGEKECSYY 162
Query: 65 SRYGICKFGPACKYDHPIHPDASAEYGLDPP 95
+ G CKFG CK+ HP G+ PP
Sbjct: 163 MKTGQCKFGTTCKFHHPEFGGVPMTPGIYPP 193
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGL---PLRPGQNVC 61
PERPG+ +C Y+LRTG C + C+Y+HP++R + P R GQ +C
Sbjct: 55 RLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPIC 114
Query: 62 SYYSRYGICKFGPACKYDHP 81
YY + G CKFG CKY HP
Sbjct: 115 EYYMKTGTCKFGTNCKYHHP 134
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 21/33 (63%)
Query: 49 DKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
+ G P RPGQ C YY R G CKFG CKY HP
Sbjct: 301 EHGFPERPGQPDCQYYMRTGDCKFGATCKYHHP 333
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCT-LSDKGLPLRP 56
P RPG C+Y+ + G C+Y CKY HP + SP LSD +P+ P
Sbjct: 350 LPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSD--MPIAP 399
>sp|Q94AD9|C3H3_ARATH Zinc finger CCCH domain-containing protein 3 OS=Arabidopsis
thaliana GN=At1g04990 PE=2 SV=1
Length = 404
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 66/109 (60%), Gaps = 7/109 (6%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+E PER GQP+C YFL+TG CKY CKYHHPK+R + P + GLP+R G+ C Y
Sbjct: 85 EELPERIGQPDCEYFLKTGACKYGPTCKYHHPKDRN-GAQPVMFNVIGLPMRLGEKPCPY 143
Query: 64 YSRYGICKFGPACKYDHPIHPDA--SAEYGLDPPPSFGDSTTRQETGMA 110
Y R G C+FG ACK+ HP PD S YG+ SF + R +G+
Sbjct: 144 YLRTGTCRFGVACKFHHP-QPDNGHSTAYGMS---SFPAADLRYASGLT 188
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 53/99 (53%)
Query: 8 ERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRY 67
E QPEC +F+ TG CKY +CKY HP RI + PP ++ LP RPGQ C + Y
Sbjct: 260 ESSDQPECRFFMNTGTCKYGDDCKYSHPGVRISQPPPSLINPFVLPARPGQPACGNFRSY 319
Query: 68 GICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQE 106
G CKFGP CK+DHP+ P P F T +
Sbjct: 320 GFCKFGPNCKFDHPMLPYPGLTMATSLPTPFASPVTTHQ 358
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 3 VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCS 62
++ +P+RPG+ +C ++LRTG C Y S+C+Y+HP + +P+ + LP R GQ C
Sbjct: 41 LNPYPDRPGERDCQFYLRTGLCGYGSSCRYNHPTH-LPQD--VAYYKEELPERIGQPDCE 97
Query: 63 YYSRYGICKFGPACKYDHP 81
Y+ + G CK+GP CKY HP
Sbjct: 98 YFLKTGACKYGPTCKYHHP 116
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 53 PLRPGQNVCSYYSRYGICKFGPACKYDHPIH-PDASAEYGLDPPPSFGD 100
P RPG+ C +Y R G+C +G +C+Y+HP H P A Y + P G
Sbjct: 45 PDRPGERDCQFYLRTGLCGYGSSCRYNHPTHLPQDVAYYKEELPERIGQ 93
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 2 LVDEF--PERPGQPECSYFLRTGDCKYKSNCKYHHP 35
L++ F P RPGQP C F G CK+ NCK+ HP
Sbjct: 298 LINPFVLPARPGQPACGNFRSYGFCKFGPNCKFDHP 333
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 49 DKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
++GL Q C ++ G CK+G CKY HP
Sbjct: 255 NRGLSESSDQPECRFFMNTGTCKYGDDCKYSHP 287
>sp|Q941Q3|C3H37_ARATH Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis
thaliana GN=HUA1 PE=1 SV=1
Length = 524
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/126 (35%), Positives = 64/126 (50%), Gaps = 20/126 (15%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRI-------PKSPPCTLSDKGLP 53
++ +P+RPGQ EC Y+++TG+CK+ CK+HHP +R+ P+ P LS G P
Sbjct: 412 VISATYPQRPGQSECDYYMKTGECKFGERCKFHHPADRLSAMTKQAPQQPNVKLSLAGYP 471
Query: 54 LRPGQNVCSYYSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGDSTTRQETGMAGTG 113
R G C YY + G CK+G CK+DH PPP + T E AG
Sbjct: 472 RREGALNCPYYMKTGTCKYGATCKFDH-------------PPPGEVMAKTTSEADAAGAT 518
Query: 114 NGNGSD 119
N + +
Sbjct: 519 NTDTTQ 524
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 3/78 (3%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
+E+PERPG+P+C Y+++T CKY S CK++HP+ S + LP RP + +C++
Sbjct: 220 EEYPERPGEPDCPYYIKTQRCKYGSKCKFNHPREEAAVS---VETQDSLPERPSEPMCTF 276
Query: 64 YSRYGICKFGPACKYDHP 81
Y + G CKFG +CK+ HP
Sbjct: 277 YMKTGKCKFGLSCKFHHP 294
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 26/104 (25%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKN-RIPKS-------------------- 42
D PERP +P C+++++TG CK+ +CK+HHPK+ ++P S
Sbjct: 263 DSLPERPSEPMCTFYMKTGKCKFGLSCKFHHPKDIQLPSSSQDIGSSVGLTSEPDATNNP 322
Query: 43 -----PPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
P + KGLP+R G+ C +Y + G CK+G C+Y+HP
Sbjct: 323 HVTFTPALYHNSKGLPVRSGEVDCPFYLKTGSCKYGATCRYNHP 366
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 34/110 (30%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNR--IPKS--------------------- 42
P R G+ +C ++L+TG CKY + C+Y+HP+ IP++
Sbjct: 337 LPVRSGEVDCPFYLKTGSCKYGATCRYNHPERTAFIPQAAGVNYSLVSSNTANLNLGLVT 396
Query: 43 -----------PPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
P + P RPGQ+ C YY + G CKFG CK+ HP
Sbjct: 397 PATSFYQTLTQPTLGVISATYPQRPGQSECDYYMKTGECKFGERCKFHHP 446
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHH----PKNRIP--KSPPCTLSDKGLPLRPGQN 59
+P+R G+ +C+++++T CK+ +C++ H P+ IP K P + ++ P RPG+
Sbjct: 171 YPQRAGEKDCTHYMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAP-VVPNEEYPERPGEP 229
Query: 60 VCSYYSRYGICKFGPACKYDHP 81
C YY + CK+G CK++HP
Sbjct: 230 DCPYYIKTQRCKYGSKCKFNHP 251
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 53 PLRPGQNVCSYYSRYGICKFGPACKYDHPI 82
P R G+ C++Y + CKFG +C++DHPI
Sbjct: 172 PQRAGEKDCTHYMQTRTCKFGESCRFDHPI 201
>sp|Q5Z5Q3|C3H43_ORYSJ Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa
subsp. japonica GN=Os06g0520600 PE=2 SV=1
Length = 711
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 57/100 (57%), Gaps = 23/100 (23%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIP----------------------K 41
++FP RPG+P+CSY+++ G CK+ NC+++HP R+P K
Sbjct: 85 EQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPP-RMPVPPQQEYFSGNACHCHHIEGKSK 143
Query: 42 SPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
L+ GLPLRPG +CSYY GICKFG CK+DHP
Sbjct: 144 VEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKFDHP 183
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 49/78 (62%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
++ P RPG+P+CSY+++ G CK+ +C Y+HP R + P RPG+ CSY
Sbjct: 39 EQHPRRPGEPDCSYYVKFGSCKFGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSY 98
Query: 64 YSRYGICKFGPACKYDHP 81
Y ++G CKFG C+++HP
Sbjct: 99 YVKFGSCKFGMNCRFNHP 116
>sp|O48772|C3H26_ARATH Zinc finger CCCH domain-containing protein 26 OS=Arabidopsis
thaliana GN=ZFN2 PE=2 SV=1
Length = 453
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 45/69 (65%)
Query: 14 ECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFG 73
EC +F+ TG CKY +CKY HPK R+ +SPP L+ LP RPGQ C + YG CKFG
Sbjct: 266 ECRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLLNPIVLPARPGQPACGNFKAYGFCKFG 325
Query: 74 PACKYDHPI 82
CK+DH +
Sbjct: 326 ANCKFDHSM 334
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 11/101 (10%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSY 63
D+ PER GQP+C TG CKY CKYHHPK+R + P + GLP+R G+ C Y
Sbjct: 83 DQLPERVGQPDC----ETGACKYGPTCKYHHPKDRN-GAGPVLFNVLGLPMRQGEKPCPY 137
Query: 64 YSRYGICKFGPACKYDHPIHP-----DASAEYGLDPPPSFG 99
Y + G+C+FG ACK+ HP HP + + Y + PS G
Sbjct: 138 YMQTGLCRFGVACKFHHP-HPHSQPSNGHSAYAMSSFPSVG 177
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 53 PLRPGQNVCSYYSRYGICKFGPACKYDHPI 82
P RPG+ C ++ R G C +G +C+Y+HP+
Sbjct: 42 PDRPGERDCQFFLRTGQCGYGNSCRYNHPL 71
>sp|Q0DBW8|C3H42_ORYSJ Zinc finger CCCH domain-containing protein 42 OS=Oryza sativa
subsp. japonica GN=Os06g0519400 PE=2 SV=1
Length = 279
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 55/97 (56%), Gaps = 20/97 (20%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPK--------------------SPP 44
E P+RPG+ +C ++LR G CKY NC+++HP +R+P+ +
Sbjct: 116 EHPQRPGEHDCLHYLRFGRCKYGMNCRFNHPPDRLPQQQVYFPWKACHCHHSEGKSEAEH 175
Query: 45 CTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
L+ GLPLRPG +CSYY GICKFG CK+ HP
Sbjct: 176 VKLNFLGLPLRPGTGLCSYYMNRGICKFGSNCKFHHP 212
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKN 37
P RPG CSY++ G CK+ SNCK+HHP +
Sbjct: 183 LPLRPGTGLCSYYMNRGICKFGSNCKFHHPNS 214
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 43 PPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
P + + P RPG CSYY +G CKFG C Y+HP
Sbjct: 67 PKAAVEPQEYPRRPGVPDCSYYVEFGSCKFGMRCLYNHP 105
>sp|Q5ZDJ6|C3H8_ORYSJ Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp.
japonica GN=Os01g0616400 PE=2 SV=2
Length = 462
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 55/85 (64%), Gaps = 7/85 (8%)
Query: 4 DEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKG-------LPLRP 56
+ +PE+ G+P+C +F++TG CK+ S CK++HPK ++ +DK LP+RP
Sbjct: 151 ESYPEQEGEPDCPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRP 210
Query: 57 GQNVCSYYSRYGICKFGPACKYDHP 81
+ +CS+Y++ G CKF CK++HP
Sbjct: 211 SEPLCSFYAKTGKCKFRAMCKFNHP 235
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRI---------PKSPPCTLSDKGLPLRP 56
+P+RPG C ++++TG CK+ CK+HHP +R P L+ GLP R
Sbjct: 364 YPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSANWEPAEESVQLTLAGLPRRE 423
Query: 57 GQNVCSYYSRYGICKFGPACKYDHPIHPDASAE 89
VC++Y + G+CKFG CK+DHP +A A+
Sbjct: 424 DAVVCAFYMKTGVCKFGMQCKFDHPPPQEAIAK 456
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 33/109 (30%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKN---------------------------- 37
P RP +P CS++ +TG CK+++ CK++HPK+
Sbjct: 206 LPVRPSEPLCSFYAKTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADS 265
Query: 38 -----RIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
+ P + + KGLP+RPG+ C +Y + G CKFG C+++HP
Sbjct: 266 VSAKMQTPVAAAQEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHP 314
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 38/122 (31%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL----------- 54
P RPG+ +C ++++ G CK+ S C+++HP +R+ + P L LP
Sbjct: 285 LPMRPGEVDCPFYMKMGSCKFGSTCRFNHP-DRLVLNFPLPLGQTILPTPESMLLNSSAN 343
Query: 55 -----------------------RPGQNVCSYYSRYGICKFGPACKYDHPI---HPDASA 88
RPG VC +Y + G CKF CK+ HPI PD SA
Sbjct: 344 FMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHPIDRSAPDPSA 403
Query: 89 EY 90
+
Sbjct: 404 NW 405
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 37 NRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHP 81
N + K P S P RPG+ C++Y CKFG +CK+DHP
Sbjct: 87 NTMTKRPRLESSLPIYPQRPGEKDCAFYMMTRTCKFGGSCKFDHP 131
>sp|A3CEM4|C3H64_ORYSJ Putative zinc finger CCCH domain-containing protein 64 OS=Oryza
sativa subsp. japonica GN=Os12g0129500 PE=4 SV=2
Length = 527
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 5 EFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQ 58
++PERPG+P C Y+++ G+CK+ + CKY+HPK+R T+ + L L Q
Sbjct: 209 QYPERPGEPFCRYYMKFGECKHMTFCKYNHPKDRFSCKTTNTIRSESLCLHDQQ 262
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 53 PLRPGQNVCSYYSRYGICKFGPACKYDHP 81
P RPG+ C YY ++G CK CKY+HP
Sbjct: 211 PERPGEPFCRYYMKFGECKHMTFCKYNHP 239
>sp|Q9C7P4|C3H9_ARATH Putative zinc finger CCCH domain-containing protein 9
OS=Arabidopsis thaliana GN=At1g29570 PE=4 SV=1
Length = 321
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 28/113 (24%)
Query: 6 FPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYS 65
+P RPG+ +C ++L+ G C+Y+S+C+++HP R P+ LP+R
Sbjct: 52 YPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQR-PQE---------LPVR---------- 91
Query: 66 RYGICKFGPACKYDHPIHPD---ASAEYGLDP--PPSFGDSTTRQETGMAGTG 113
ICK P++ D + +E D +FGD T++ G+ +G
Sbjct: 92 ---ICKHIMDRNVAEPMYQDWRESESERRFDERTQRTFGDERTQRRYGIEYSG 141
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Query: 34 HPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIH 83
K R+ +S P P+RPG+ C +Y + G+C++ +C+++HP
Sbjct: 41 QSKERMRQSSP-------YPVRPGKKDCQFYLKNGLCRYRSSCRFNHPTQ 83
>sp|Q9C7P1|C3H10_ARATH Putative zinc finger CCCH domain-containing protein 10
OS=Arabidopsis thaliana GN=At1g29600/At1g29610 PE=2 SV=2
Length = 389
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 1 MLVDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV 60
+L +P RPG+ C ++++ C++ S C Y+H PP + +P R G+ +
Sbjct: 123 VLSSAYPVRPGEDNCLFYMKNHLCEWGSECCYNH--------PPL----QEIPCRIGKKL 170
Query: 61 -CSYYSRYGICKFGPACKYDHPIHPDASA 88
C + G CK G C ++HP D +
Sbjct: 171 DC----KAGACKRGSNCPFNHPKERDGDS 195
>sp|Q7SGR2|YTH1_NEUCR mRNA 3'-end-processing protein yth-1 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=yth-1 PE=3 SV=1
Length = 317
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGL-PLRP-------GQNVCSY 63
PEC++F+R G C C Y H + + + PPC ++G PL P + +C Y
Sbjct: 124 MPECNFFVRNGYCSNGDECLYLHI-DPLSRLPPCPHYERGFCPLGPRCDKKHFRRKLCLY 182
Query: 64 YSRYGICKFGPACKYDHPIHPDASAEYGLDPPPSFGD 100
Y G C G CK HP +A+ ++ P + G+
Sbjct: 183 YLA-GFCPDGKGCK--EGAHPRWTADKDMEKPRAKGE 216
>sp|Q9SD61|C3H42_ARATH Zinc finger CCCH domain-containing protein 42 OS=Arabidopsis
thaliana GN=At3g47120 PE=2 SV=1
Length = 352
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 7/94 (7%)
Query: 9 RPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL-----RPGQNVCSY 63
R + C F R G+C +CK+ H + R + D+ R G+ VC
Sbjct: 130 REARGVCRAFQR-GECTRGDSCKFSHDEKRAANTGWGHEEDRSSKWDHDKNREGRGVCRA 188
Query: 64 YSRYGICKFGPACKYDHPIHPDASAEYGLDPPPS 97
+ R G C G +CK+ H A+ +G + S
Sbjct: 189 FQR-GECTRGDSCKFSHDEKRAATTGWGHEEDRS 221
>sp|Q5BGN2|YTH1_EMENI mRNA 3'-end-processing protein yth1 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=yth1 PE=3 SV=1
Length = 254
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGL-PLRP-------GQNVCSY 63
PEC F R+G C +C Y H + + + PPC D+G PL P + +C Y
Sbjct: 117 MPECQSFSRSGYCPNGDDCLYQHVREQA-RLPPCEHYDQGFCPLGPLCAKRHVRRRLCPY 175
Query: 64 YSRYGICKFGPACKYDHP 81
Y G C GP C HP
Sbjct: 176 YVA-GFCPEGPNCANAHP 192
>sp|Q6BTT1|YTH1_DEBHA mRNA 3'-end-processing protein YTH1 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=YTH1 PE=3 SV=2
Length = 223
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 26/130 (20%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL-------PLRPGQNVCS 62
PEC ++ + G C C Y H P+++I PPC+ +KG R + +
Sbjct: 96 MPECLFYSKNGFCTQTPECLYLHVDPQSKI---PPCSSYEKGFCPDGPKCANRHIRKIMC 152
Query: 63 YYSRYGICKFGPACKYDHP----------IHPDASAEYGLDPPPSFGDSTTRQETGMA-G 111
G C G C Y HP I PD A ++ + + +++ MA
Sbjct: 153 PLWLTGFCPKGAECDYTHPRFEAIIDRLRIKPDEDA---VEEKEKVANGSDKEDQNMADA 209
Query: 112 TGNGNGSDKN 121
T NGN +K+
Sbjct: 210 TSNGNTEEKD 219
>sp|Q9DD48|MKRN2_SERQU Probable E3 ubiquitin-protein ligase makorin-2 OS=Seriola
quinqueradiata GN=mkrn2 PE=2 SV=1
Length = 423
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICK 71
Q C YFL G C+ S C + H N S P T +C +Y R G+C
Sbjct: 5 QVTCRYFLH-GVCREGSRCLFSHDLN---NSKPST-------------ICKFYQR-GVCA 46
Query: 72 FGPACKYDH 80
+G C+YDH
Sbjct: 47 YGERCRYDH 55
>sp|Q9TT91|MKRN1_MACEU E3 ubiquitin-protein ligase makorin-1 OS=Macropus eugenii GN=MKRN1
PE=2 SV=1
Length = 478
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 18/69 (26%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICK 71
Q C YF+ G CK +NC+Y H L VC YY R G C
Sbjct: 54 QVTCRYFMH-GVCKKGNNCRYSH----------------DLSTSQSAMVCRYYQR-GCCA 95
Query: 72 FGPACKYDH 80
+G C+Y+H
Sbjct: 96 YGDRCRYEH 104
>sp|Q4IPA4|YTH1_GIBZE mRNA 3'-end-processing protein YTH1 OS=Gibberella zeae (strain PH-1
/ ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=YTH1 PE=3
SV=2
Length = 255
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHH--PKNRIPKSPPCTLSDKGL-PLRPG-------QNVC 61
PEC++F+R G C C Y H P++R+ PPC D G PL P + +C
Sbjct: 104 MPECNFFMRNGYCSNGDECLYLHIDPQSRL---PPCPHYDMGFCPLGPNCSKKHVRRKLC 160
Query: 62 SYYSRYGICKFGPACK 77
+Y G C GP CK
Sbjct: 161 VFYLA-GFCPDGPDCK 175
>sp|Q9UHC7|MKRN1_HUMAN E3 ubiquitin-protein ligase makorin-1 OS=Homo sapiens GN=MKRN1 PE=1
SV=3
Length = 482
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 18/69 (26%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICK 71
Q C YF+ G CK NC+Y H LSD P VC Y+ R G C
Sbjct: 58 QVTCRYFMH-GVCKEGDNCRYSHD-----------LSDS-----PYSVVCKYFQR-GYCI 99
Query: 72 FGPACKYDH 80
+G C+Y+H
Sbjct: 100 YGDRCRYEH 108
>sp|P0CS64|YTH1_CRYNJ mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=YTH1 PE=3 SV=1
Length = 332
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPP-----CTLSDKGLPLRPGQNVCSYYSR 66
P C +F++ G C+ C Y HP++R + P C L + +C Y+
Sbjct: 124 MPVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYA- 182
Query: 67 YGICKFGPACKYDHPIHPDASAEYGLDPPP 96
G C G CK HP AE ++P P
Sbjct: 183 AGFCPDGKDCKLAHPSPNRPPAESYINPIP 212
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 18/67 (26%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGP 74
C ++LR CK NC+Y H D L P VC ++ + G C+ G
Sbjct: 99 CKHYLRNL-CKMGDNCEYTH--------------DFNLRTMP---VCIWFVKQGKCELGG 140
Query: 75 ACKYDHP 81
C Y HP
Sbjct: 141 ECLYFHP 147
>sp|P0CS65|YTH1_CRYNB mRNA 3'-end-processing protein YTH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=YTH1 PE=3 SV=1
Length = 332
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPP-----CTLSDKGLPLRPGQNVCSYYSR 66
P C +F++ G C+ C Y HP++R + P C L + +C Y+
Sbjct: 124 MPVCIWFVKQGKCELGGECLYFHPRDRRVECPDYNRGFCVLGPNCPRKHIRRRLCDAYA- 182
Query: 67 YGICKFGPACKYDHPIHPDASAEYGLDPPP 96
G C G CK HP AE ++P P
Sbjct: 183 AGFCPDGKDCKLAHPSPNRPPAESYINPIP 212
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 18/67 (26%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGP 74
C ++LR CK NC+Y H D L P VC ++ + G C+ G
Sbjct: 99 CKHYLRNL-CKMGDNCEYTH--------------DFNLRTMP---VCIWFVKQGKCELGG 140
Query: 75 ACKYDHP 81
C Y HP
Sbjct: 141 ECLYFHP 147
>sp|Q9QXP6|MKRN1_MOUSE E3 ubiquitin-protein ligase makorin-1 OS=Mus musculus GN=Mkrn1 PE=2
SV=1
Length = 481
Score = 35.4 bits (80), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICK 71
Q C YF+ G CK NC+Y H LSD P VC Y+ R G C
Sbjct: 58 QVTCRYFMH-GVCKEGDNCRYSHD-----------LSDS-----PYGVVCKYFQR-GYCV 99
Query: 72 FGPACKYDH--PIHPDASAEYGLDPPP 96
+G C+Y+H P+ + L P
Sbjct: 100 YGDRCRYEHSKPLKQEEVTATDLSAKP 126
>sp|Q4WKD9|YTH1_ASPFU mRNA 3'-end-processing protein yth1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=yth1
PE=3 SV=1
Length = 254
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 10/78 (12%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGL----PLRPGQNV----CSY 63
PEC F R+G C +C Y H + + + PPC D+G PL ++V C Y
Sbjct: 117 MPECQSFSRSGYCPNGDDCLYQHVREQA-RLPPCENYDQGFCELGPLCSKRHVRRRLCKY 175
Query: 64 YSRYGICKFGPACKYDHP 81
Y G C G AC HP
Sbjct: 176 Y-LAGFCPEGKACPDAHP 192
>sp|Q6GLQ4|PP1RA_XENLA Serine/threonine-protein phosphatase 1 regulatory subunit 10
OS=Xenopus laevis GN=ppp1r10 PE=2 SV=1
Length = 819
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHP 35
+P C +F+ G+C+Y++NC ++HP
Sbjct: 788 RPTCRHFMMKGNCRYENNCAFYHP 811
>sp|Q657B3|C3H7_ORYSJ Zinc finger CCCH domain-containing protein 7 OS=Oryza sativa subsp.
japonica GN=Os01g0572100 PE=2 SV=1
Length = 698
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 21/118 (17%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNV----------CSYY 64
C ++L G C+ + CK+ H + KS PCT +G L+ G + C +
Sbjct: 435 CHFYLH-GKCQQGNLCKFSHDTTPLTKSKPCTHYARGSCLK-GDDCPYDHELSKYPCHNF 492
Query: 65 SRYGICKFGPACKYDH-------PIHPDASAEYGLDPPPSFG--DSTTRQETGMAGTG 113
G+C G CK+ H P PDA P + T+RQ+T +G
Sbjct: 493 MENGMCIRGDKCKFSHVIPTAEGPSTPDAKKSNASSVPEKANCQEQTSRQKTSTVYSG 550
>sp|P41000|CPS3_SCHPO Protein cps3 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cps3 PE=1 SV=3
Length = 583
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 18/68 (26%)
Query: 18 FLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACK 77
F R G C NC + H L L + +C Y+ + G CKFG C
Sbjct: 43 FFRQGTCTSGKNCIFSH----------------DLELATEKTICKYFQK-GNCKFGSKCA 85
Query: 78 YDHPIHPD 85
+H + PD
Sbjct: 86 LEH-VLPD 92
>sp|O55000|PP1RA_RAT Serine/threonine-protein phosphatase 1 regulatory subunit 10
OS=Rattus norvegicus GN=Ppp1r10 PE=1 SV=1
Length = 872
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHP 35
+P C +F+ G+C+Y++NC ++HP
Sbjct: 841 RPVCRHFMMKGNCRYENNCAFYHP 864
>sp|Q9DFG8|MKRN2_DANRE Probable E3 ubiquitin-protein ligase makorin-2 OS=Danio rerio
GN=mkrn2 PE=2 SV=2
Length = 414
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 18/69 (26%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICK 71
Q C YFL G C+ S C + H + S P T +C YY R G C
Sbjct: 5 QVTCRYFLH-GVCREGSRCLFSHD---LTTSKPST-------------ICKYYQR-GACA 46
Query: 72 FGPACKYDH 80
+G C+YDH
Sbjct: 47 YGDRCRYDH 55
>sp|Q80W00|PP1RA_MOUSE Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Mus
musculus GN=Ppp1r10 PE=1 SV=1
Length = 888
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHP 35
+P C +F+ G+C+Y++NC ++HP
Sbjct: 857 RPVCRHFMMKGNCRYENNCAFYHP 880
>sp|Q767K9|PP1RA_PIG Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Sus
scrofa GN=PPP1R10 PE=2 SV=1
Length = 925
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHP 35
+P C +F+ G+C+Y++NC ++HP
Sbjct: 894 RPVCRHFMMKGNCRYENNCAFYHP 917
>sp|Q7YR38|PP1RA_PANTR Serine/threonine-protein phosphatase 1 regulatory subunit 10 OS=Pan
troglodytes GN=PPP1R10 PE=3 SV=1
Length = 940
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHP 35
+P C +F+ G+C+Y++NC ++HP
Sbjct: 909 RPVCRHFMMKGNCRYENNCAFYHP 932
>sp|Q5TM61|PP1RA_MACMU Serine/threonine-protein phosphatase 1 regulatory subunit 10
OS=Macaca mulatta GN=PPP1R10 PE=3 SV=1
Length = 940
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHP 35
+P C +F+ G+C+Y++NC ++HP
Sbjct: 909 RPVCRHFMMKGNCRYENNCAFYHP 932
>sp|Q96QC0|PP1RA_HUMAN Serine/threonine-protein phosphatase 1 regulatory subunit 10
OS=Homo sapiens GN=PPP1R10 PE=1 SV=1
Length = 940
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHP 35
+P C +F+ G+C+Y++NC ++HP
Sbjct: 909 RPVCRHFMMKGNCRYENNCAFYHP 932
>sp|Q6GLT5|MKRN1_XENLA Probable E3 ubiquitin-protein ligase makorin-1 OS=Xenopus laevis
GN=mkrn1 PE=2 SV=1
Length = 408
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 26/101 (25%)
Query: 6 FPERP------GQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQN 59
FPE P C YF+ G CK NC+Y H L
Sbjct: 25 FPENPPVGVWTRHVTCRYFIH-GVCKEGINCRYSH----------------DLATSRSAM 67
Query: 60 VCSYYSRYGICKFGPACKYDH--PIHPDASAEYGLDPPPSF 98
+C Y+ R G C +G C+Y+H P+ D + + P S
Sbjct: 68 ICRYFQR-GCCAYGDRCRYEHNKPLQEDPTGDTCTAPSESL 107
>sp|Q2URI6|YTH1_ASPOR mRNA 3'-end-processing protein yth1 OS=Aspergillus oryzae (strain
ATCC 42149 / RIB 40) GN=yth1 PE=3 SV=1
Length = 255
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGL-PLRP-------GQNVCSY 63
PEC F R+G C +C Y H + + + PPC D+G PL P + +C Y
Sbjct: 117 MPECQSFSRSGYCPNGDDCLYQHVREQA-RLPPCEHYDRGFCPLGPLCAKRHVRRRLCQY 175
Query: 64 YSRYGICKFGPACKYDH 80
Y G C G C H
Sbjct: 176 Y-LAGFCPEGKGCADAH 191
>sp|Q9H000|MKRN2_HUMAN Probable E3 ubiquitin-protein ligase makorin-2 OS=Homo sapiens
GN=MKRN2 PE=2 SV=2
Length = 416
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 19/77 (24%)
Query: 12 QPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICK 71
Q C YF+ G C+ S C + H + S P T +C YY + G C
Sbjct: 5 QITCRYFMH-GVCREGSQCLFSHD---LANSKPST-------------ICKYYQK-GYCA 46
Query: 72 FGPACKYDHPIHPDASA 88
+G C+YDH P A+A
Sbjct: 47 YGTRCRYDH-TRPSAAA 62
>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus
musculus GN=Cpsf4 PE=2 SV=1
Length = 211
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 15 CSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPL---RPGQNVCSYYSRYGICK 71
C ++LR G CK C++ H + + K P C K PL R + V G C
Sbjct: 68 CKHWLR-GLCKKGDQCEFLHEYD-MTKMPECYFYSKFGPLCRHRHTRRVICVNYLVGFCP 125
Query: 72 FGPACKYDHP 81
GP+CK+ HP
Sbjct: 126 EGPSCKFMHP 135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.139 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,865,676
Number of Sequences: 539616
Number of extensions: 2490662
Number of successful extensions: 4201
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 100
Number of HSP's that attempted gapping in prelim test: 3715
Number of HSP's gapped (non-prelim): 449
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)