Query 033320
Match_columns 122
No_of_seqs 126 out of 1123
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 20:48:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033320.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033320hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.7 1.3E-17 4.5E-22 108.2 3.6 69 8-84 8-76 (77)
2 2d9n_A Cleavage and polyadenyl 99.6 5.3E-16 1.8E-20 101.7 4.2 60 8-86 6-65 (77)
3 2cqe_A KIAA1064 protein; CCCH 99.6 8.4E-16 2.9E-20 105.2 5.2 59 3-84 4-62 (98)
4 2rhk_C Cleavage and polyadenyl 99.6 9.5E-16 3.2E-20 99.7 2.7 60 7-85 11-70 (72)
5 3d2q_A Muscleblind-like protei 99.4 1.1E-13 3.8E-18 89.1 2.7 62 11-85 5-67 (70)
6 2e5s_A Otthump00000018578; ZF- 99.4 1.2E-13 4.2E-18 94.6 1.6 64 9-85 17-81 (98)
7 3d2n_A Muscleblind-like protei 99.3 1.4E-12 4.7E-17 87.0 2.7 61 10-85 7-68 (83)
8 2rpp_A Muscleblind-like protei 99.1 9.6E-12 3.3E-16 83.9 2.0 61 11-86 16-77 (89)
9 2d9n_A Cleavage and polyadenyl 98.3 2E-07 7E-12 60.5 2.6 39 11-68 37-75 (77)
10 1m9o_A Tristetraproline; Cys3H 98.1 1.3E-06 4.5E-11 55.9 3.3 31 56-86 10-40 (77)
11 2cqe_A KIAA1064 protein; CCCH 98.0 3.5E-06 1.2E-10 57.2 3.7 26 56-82 11-36 (98)
12 2rhk_C Cleavage and polyadenyl 97.9 5.1E-06 1.7E-10 53.4 2.0 29 56-85 14-42 (72)
13 3u9g_A Zinc finger CCCH-type a 97.9 7.1E-06 2.4E-10 63.4 3.1 70 12-85 89-200 (229)
14 2d9m_A Zinc finger CCCH-type d 97.7 1.3E-05 4.5E-10 51.5 1.5 28 11-39 19-46 (69)
15 2d9m_A Zinc finger CCCH-type d 97.6 5.1E-06 1.7E-10 53.4 -0.8 28 57-85 19-46 (69)
16 2fc6_A Nuclear, target of EGR1 97.3 7.2E-05 2.5E-09 45.1 1.6 29 57-85 19-47 (50)
17 3d2q_A Muscleblind-like protei 97.3 7.5E-05 2.6E-09 47.4 1.7 27 58-85 6-33 (70)
18 2fc6_A Nuclear, target of EGR1 97.2 8.8E-05 3E-09 44.7 1.0 28 10-37 18-45 (50)
19 3d2n_A Muscleblind-like protei 97.2 0.00016 5.6E-09 47.6 2.3 27 57-84 8-35 (83)
20 2rpp_A Muscleblind-like protei 97.1 0.00018 6E-09 48.1 2.1 28 57-85 16-44 (89)
21 2e5s_A Otthump00000018578; ZF- 97.0 0.0002 6.9E-09 48.5 1.1 27 9-37 53-79 (98)
22 2lhn_A Nuclear polyadenylated 95.8 0.00023 7.7E-09 46.9 0.0 62 11-84 8-74 (80)
23 3u1l_A PRE-mRNA-splicing facto 96.6 0.00046 1.6E-08 53.3 0.9 27 58-85 70-96 (240)
24 3u1l_A PRE-mRNA-splicing facto 96.3 0.0008 2.7E-08 51.9 0.6 26 11-37 69-94 (240)
25 2lhn_A Nuclear polyadenylated 94.7 0.0016 5.6E-08 42.7 0.0 18 60-81 33-50 (80)
26 3u9g_A Zinc finger CCCH-type a 87.1 0.21 7.2E-06 38.4 1.4 22 13-36 176-197 (229)
27 3v33_A Ribonuclease ZC3H12A; r 86.5 0.13 4.5E-06 39.4 0.0 26 57-85 191-216 (223)
28 3v33_A Ribonuclease ZC3H12A; r 82.9 0.24 8.2E-06 37.9 0.0 24 11-37 191-214 (223)
29 2kqb_A Aprataxin and PNK-like 50.9 14 0.00046 24.4 3.0 10 68-77 57-66 (89)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.68 E-value=1.3e-17 Score=108.24 Aligned_cols=69 Identities=19% Similarity=0.551 Sum_probs=29.2
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCC
Q 033320 8 ERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHP 84 (122)
Q Consensus 8 ~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~ 84 (122)
.+.++.+|++|++.|.|++|++|+|+|+..+...... .....+.+|++|..+|.|++|++|+|+|...+
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------~~~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------HPKYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC-----------------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------cccccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 4578899999987899999999999999876432110 01234689998876799999999999998765
No 2
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.3e-16 Score=101.69 Aligned_cols=60 Identities=25% Similarity=0.577 Sum_probs=51.5
Q ss_pred CCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCCC
Q 033320 8 ERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDA 86 (122)
Q Consensus 8 ~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~~ 86 (122)
...++++|+||++ |.|++|++|+|+|+.+. .+.++|++|+++|.|. |++|+|.|..++..
T Consensus 6 ~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~-----------------~~~~~C~~f~~~G~C~-~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 6 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM-----------------TKMPECYFYSKFGECS-NKECPFLHIDPESK 65 (77)
T ss_dssp SCCTTSBCHHHHT-TCCSCTTSSSSBCSCCT-----------------TTSCBCHHHHHTCCCC-CSSCSSBCCCTTSS
T ss_pred CCCcceeCHhHcc-CcCCCCCCCCCcccccc-----------------CcCCCCcccCCCCccC-CCCeeccCCCcccc
Confidence 3457889999995 99999999999999763 2357899999889999 99999999987653
No 3
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.59 E-value=8.4e-16 Score=105.23 Aligned_cols=59 Identities=25% Similarity=0.531 Sum_probs=51.4
Q ss_pred CCCCCCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCC
Q 033320 3 VDEFPERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPI 82 (122)
Q Consensus 3 ~~~~~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~ 82 (122)
.+++..+.++.+|+||+ .|.|++|++|+|+|+ ..+|++|+..|.|++|++|+|.|..
T Consensus 4 sH~~~~~~k~~lC~~f~-~G~C~~G~~C~f~H~----------------------~~~C~~f~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 4 GSSGELPKKRELCKFYI-TGFCARAENCPYMHG----------------------DFPCKLYHTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp CCCCCCSCCCSBCTTTT-TTCCSCSTTCSSBSS----------------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred cccCCCCCCCccCcccc-cCcCCCCCCCCCCCC----------------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence 45667778999999998 699999999999999 1689999755999999999999986
Q ss_pred CC
Q 033320 83 HP 84 (122)
Q Consensus 83 ~~ 84 (122)
..
T Consensus 61 ~~ 62 (98)
T 2cqe_A 61 LT 62 (98)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 4
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.56 E-value=9.5e-16 Score=99.66 Aligned_cols=60 Identities=25% Similarity=0.557 Sum_probs=51.3
Q ss_pred CCCCCccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 7 PERPGQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 7 ~~rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
....++++|+||++ |.|++|++|+|+|+.+. .+.++|+||+++|.|.+ ++|+|.|+.+..
T Consensus 11 ~~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~-----------------~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~ 70 (72)
T 2rhk_C 11 MSGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM-----------------TKMSECYFYSKFGECSN-KECPFLHIDPES 70 (72)
T ss_dssp SSCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT-----------------TSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred CCCCcCeeCHHHhc-CCCCCCCCCCCcccccc-----------------ccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence 45577899999995 99999999999999753 23579999998899999 999999998764
No 5
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.39 E-value=1.1e-13 Score=89.15 Aligned_cols=62 Identities=26% Similarity=0.561 Sum_probs=48.7
Q ss_pred CccccccccccccCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 11 GQPECSYFLRTGDCKYKS-NCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 11 ~~~~Cr~f~k~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
+..+|++|+ .|.|.+|+ .|+|+|+....... +...+.++|.+|++ |.|..| +|+|.|+.+.+
T Consensus 5 k~~vC~~f~-~G~C~rg~~~C~f~H~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 5 RLEVCREYQ-RGNCNRGENDCRFAHPADSTMID----------TNDNTVTVCMDYIK-GRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp EEEBCHHHH-TTCCSSCTTTCSSBCCCTTSCCB----------TTTTEEEBCHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred cchhCHHHh-cCCCCCCCCCCCCccCccccccc----------ccCCcceeccccCc-CCCCCC-CcCeeCCHHHH
Confidence 467999998 59999999 59999997643210 01234689999999 999999 99999987643
No 6
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1.2e-13 Score=94.57 Aligned_cols=64 Identities=28% Similarity=0.565 Sum_probs=51.2
Q ss_pred CCCccccccccccccCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 9 RPGQPECSYFLRTGDCKYKS-NCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 9 rp~~~~Cr~f~k~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
..+..+|++|++ |.|.+|+ .|+|+|+.+..... +.....++|.+|++ |.|.+| +|+|.|+.+.+
T Consensus 17 ~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~~----------~~~~~~~vC~~flk-G~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 17 TDKLEVCREFQR-GNCARGETDCRFAHPADSTMID----------TSDNTVTVCMDYIK-GRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp SSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSCC----------TTTCEEEBCHHHHH-TCCCCT-TCCSBCCCHHH
T ss_pred hhhhhhhHHHhc-CcCCCCCCCCCCcCCchhcccc----------ccCCccccchhhcc-CCCCCC-CcCccCChHHH
Confidence 346789999996 9999999 79999998653211 11235689999999 999999 99999998655
No 7
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=99.27 E-value=1.4e-12 Score=86.96 Aligned_cols=61 Identities=28% Similarity=0.503 Sum_probs=49.5
Q ss_pred CCccccccccccccCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 10 PGQPECSYFLRTGDCKYKS-NCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 10 p~~~~Cr~f~k~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
.+..+|++|++ |.|.+|+ .|+|+|+....... ....++|..|++ |.|..+ .|+|.|+...+
T Consensus 7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~------------~~~~~vC~dflk-G~C~r~-~C~y~H~~~~l 68 (83)
T 3d2n_A 7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPPHL 68 (83)
T ss_dssp GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEE------------TTEEECCHHHHT-TCCCCS-SCSSCCCCHHH
T ss_pred ccchhcHHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeehhHhhh-ccccCC-CcceeCChHHH
Confidence 45689999996 9999997 99999998643211 123589999999 999998 99999998655
No 8
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=99.15 E-value=9.6e-12 Score=83.89 Aligned_cols=61 Identities=28% Similarity=0.523 Sum_probs=49.5
Q ss_pred CccccccccccccCCCCC-CCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcCcCCCCCCCccCCCCCCCC
Q 033320 11 GQPECSYFLRTGDCKYKS-NCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYGICKFGPACKYDHPIHPDA 86 (122)
Q Consensus 11 ~~~~Cr~f~k~G~C~~G~-~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~~ 86 (122)
+..+|++|++ |.|.+|+ .|+|+|+....... ....++|..|++ |.|..+ .|+|.|+...+.
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~------------~~~~~vC~dflk-G~C~r~-~Cky~H~~~hl~ 77 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSCQVE------------NGRVIACFDSLK-GRCSRE-NCKYLHPPTHLK 77 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCB------------TTBEEBCHHHHH-TCCCCT-TCCSBCCCHHHH
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCcccccc------------CCceeeehhhhh-CcCCCC-CcceecCHHHHH
Confidence 4679999996 9999998 99999998653211 123589999999 999998 899999987553
No 9
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=2e-07 Score=60.48 Aligned_cols=39 Identities=21% Similarity=0.657 Sum_probs=32.4
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCcccccccCcC
Q 033320 11 GQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDKGLPLRPGQNVCSYYSRYG 68 (122)
Q Consensus 11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~g~p~~~~~~~C~~f~~~G 68 (122)
++++|+||++.|.|. |+.|+|+|.... .++++|++|++ |
T Consensus 37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~-----------------~~~~~C~~f~~-g 75 (77)
T 2d9n_A 37 KMPECYFYSKFGECS-NKECPFLHIDPE-----------------SKIKDCPWSGP-S 75 (77)
T ss_dssp TSCBCHHHHHTCCCC-CSSCSSBCCCTT-----------------SSCSSSSCCTT-T
T ss_pred cCCCCcccCCCCccC-CCCeeccCCCcc-----------------ccCCCCccccc-C
Confidence 567999999669999 899999999753 24589999997 5
No 10
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.15 E-value=1.3e-06 Score=55.87 Aligned_cols=31 Identities=26% Similarity=0.698 Sum_probs=27.4
Q ss_pred CCCcccccccCcCcCCCCCCCccCCCCCCCC
Q 033320 56 PGQNVCSYYSRYGICKFGPACKYDHPIHPDA 86 (122)
Q Consensus 56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~~ 86 (122)
.++.+|++|+++|.|++|++|+|+|...++.
T Consensus 10 ~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~ 40 (77)
T 1m9o_A 10 YKTELCRTYSESGRCRYGAKCQFAHGLGELR 40 (77)
T ss_dssp CCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred ccchhCHHhhhCCCcCCCCCccCCCCChhhc
Confidence 4679999998669999999999999998764
No 11
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=98.03 E-value=3.5e-06 Score=57.17 Aligned_cols=26 Identities=27% Similarity=0.724 Sum_probs=23.4
Q ss_pred CCCcccccccCcCcCCCCCCCccCCCC
Q 033320 56 PGQNVCSYYSRYGICKFGPACKYDHPI 82 (122)
Q Consensus 56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~ 82 (122)
.++.+|+||++ |.|++|++|+|+|..
T Consensus 11 ~k~~lC~~f~~-G~C~~G~~C~f~H~~ 36 (98)
T 2cqe_A 11 KKRELCKFYIT-GFCARAENCPYMHGD 36 (98)
T ss_dssp CCCSBCTTTTT-TCCSCSTTCSSBSSS
T ss_pred CCCccCccccc-CcCCCCCCCCCCCCC
Confidence 45789999987 999999999999983
No 12
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.86 E-value=5.1e-06 Score=53.38 Aligned_cols=29 Identities=31% Similarity=0.676 Sum_probs=25.3
Q ss_pred CCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 56 PGQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 56 ~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
.+..+|++|++ |.|.+|++|+|+|.....
T Consensus 14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~~ 42 (72)
T 2rhk_C 14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDMT 42 (72)
T ss_dssp CCCSBCHHHHT-TCCCCGGGSSSBCSCCTT
T ss_pred CcCeeCHHHhc-CCCCCCCCCCCccccccc
Confidence 45689999999 999999999999996543
No 13
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.86 E-value=7.1e-06 Score=63.42 Aligned_cols=70 Identities=24% Similarity=0.486 Sum_probs=47.4
Q ss_pred ccccccccccccCC----CCCCCCCCCCCCCCCC----------------------------C-CCCccCCCCC------
Q 033320 12 QPECSYFLRTGDCK----YKSNCKYHHPKNRIPK----------------------------S-PPCTLSDKGL------ 52 (122)
Q Consensus 12 ~~~Cr~f~k~G~C~----~G~~C~F~H~~~~~~~----------------------------~-~~~~~~~~g~------ 52 (122)
--+|++|+ .|.|+ .+..|+|+|+....-+ . +.|..| .|.
T Consensus 89 LHLCK~~l-~G~C~~~~~~~~~Ck~SHdi~s~~N~~vLk~h~l~~L~~~eL~~LLLQnDp~lLPeiC~~Y-kG~g~~g~C 166 (229)
T 3u9g_A 89 LHLCKLNL-LGRCHYAQSQRNLCKYSHDVLSEQNFQILKNHELSGLNQEELACLLVQSDPFFLPEICKSY-KGEGRKQTC 166 (229)
T ss_dssp BCCCHHHH-TTCCGGGTCCSSCCSSCSCTTCHHHHHHHHHTTCTTCCHHHHHHHHHTTCGGGSCCBCTTC-CCSSSCCSC
T ss_pred eeechhhh-cCcCCcccCCCCCcccccccCchhHHHHHHHcCcccCCHhHhhheeccCCCccCchHHHHh-CCCCCCCcC
Confidence 35899999 69993 4588999999754110 0 124445 431
Q ss_pred ---CCCCCCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 53 ---PLRPGQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 53 ---p~~~~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
....+--+|++|++ |.|+| .+|+-+|.....
T Consensus 167 ~~~~~C~kLHIC~~Fl~-G~C~f-~~CkRsH~~~~~ 200 (229)
T 3u9g_A 167 GQPQPCERLHICEHFTR-GNCSY-LNCLRSHNLMDR 200 (229)
T ss_dssp SSSSCCCSBCSCHHHHT-TCCCC-SSCSSCCCTTSH
T ss_pred CCCCCCcceeccchhhc-CCcCC-CCccCccCccCc
Confidence 12234568999998 99999 799999987543
No 14
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.66 E-value=1.3e-05 Score=51.49 Aligned_cols=28 Identities=21% Similarity=0.623 Sum_probs=24.5
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCC
Q 033320 11 GQPECSYFLRTGDCKYKSNCKYHHPKNRI 39 (122)
Q Consensus 11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~ 39 (122)
+..+|+.|+ .|.|+||++|.|+|...++
T Consensus 19 k~~LC~~~~-~G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 19 YFSICDRYM-NGTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCSBCHHHH-HSCCSSCSSCSSBSSHHHH
T ss_pred CcccCcccC-cCCCCCCCccCCcCCHHHH
Confidence 558999996 6999999999999997653
No 15
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.63 E-value=5.1e-06 Score=53.43 Aligned_cols=28 Identities=29% Similarity=0.594 Sum_probs=24.7
Q ss_pred CCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 57 GQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 57 ~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
...+|+.|.. |.|+||++|.|+|...++
T Consensus 19 k~~LC~~~~~-G~C~~G~~C~FAHG~~EL 46 (69)
T 2d9m_A 19 YFSICDRYMN-GTCPEGNSCKFAHGNAEL 46 (69)
T ss_dssp CCSBCHHHHH-SCCSSCSSCSSBSSHHHH
T ss_pred CcccCcccCc-CCCCCCCccCCcCCHHHH
Confidence 4589999965 999999999999988766
No 16
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.33 E-value=7.2e-05 Score=45.10 Aligned_cols=29 Identities=34% Similarity=0.870 Sum_probs=26.2
Q ss_pred CCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 57 GQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 57 ~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
.+.+|.-|..+|+|++|.+|.++|...-.
T Consensus 19 ~~~iC~~FSayGwCp~G~~Cp~SHDiDl~ 47 (50)
T 2fc6_A 19 PTSICDNFSAYGWCPLGPQCPQSHDISGP 47 (50)
T ss_dssp CSCBCSHHHHTCCCTTGGGCSSBCCCCCC
T ss_pred ccchhhhccccccCCCCCCCCccccCCCC
Confidence 56899999999999999999999987654
No 17
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=97.32 E-value=7.5e-05 Score=47.40 Aligned_cols=27 Identities=37% Similarity=0.929 Sum_probs=23.5
Q ss_pred CcccccccCcCcCCCCC-CCccCCCCCCC
Q 033320 58 QNVCSYYSRYGICKFGP-ACKYDHPIHPD 85 (122)
Q Consensus 58 ~~~C~~f~~~G~C~~G~-~Crf~H~~~~~ 85 (122)
..+|++|++ |.|..|+ .|+|+|+....
T Consensus 6 ~~vC~~f~~-G~C~rg~~~C~f~H~~~~~ 33 (70)
T 3d2q_A 6 LEVCREYQR-GNCNRGENDCRFAHPADST 33 (70)
T ss_dssp EEBCHHHHT-TCCSSCTTTCSSBCCCTTS
T ss_pred chhCHHHhc-CCCCCCCCCCCCccCcccc
Confidence 479999998 9999999 59999987653
No 18
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=97.20 E-value=8.8e-05 Score=44.71 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=25.9
Q ss_pred CCccccccccccccCCCCCCCCCCCCCC
Q 033320 10 PGQPECSYFLRTGDCKYKSNCKYHHPKN 37 (122)
Q Consensus 10 p~~~~Cr~f~k~G~C~~G~~C~F~H~~~ 37 (122)
..+.+|.-|...|-|++|.+|.++|+.+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4788999998899999999999999976
No 19
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.19 E-value=0.00016 Score=47.61 Aligned_cols=27 Identities=33% Similarity=0.797 Sum_probs=24.1
Q ss_pred CCcccccccCcCcCCCCC-CCccCCCCCC
Q 033320 57 GQNVCSYYSRYGICKFGP-ACKYDHPIHP 84 (122)
Q Consensus 57 ~~~~C~~f~~~G~C~~G~-~Crf~H~~~~ 84 (122)
+..+|+.|++ |.|..|+ .|+|+|+...
T Consensus 8 ~~~VCr~Flr-G~C~r~d~~C~f~H~~~~ 35 (83)
T 3d2n_A 8 TLEVCREFQR-GTCSRPDTECKFAHPSKS 35 (83)
T ss_dssp EEEBCTTGGG-TCCCSCTTTCSSBCCCTT
T ss_pred cchhcHHHhc-CCCCCCCCCCCCcCCCcc
Confidence 3579999999 9999996 9999999865
No 20
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=97.14 E-value=0.00018 Score=48.11 Aligned_cols=28 Identities=32% Similarity=0.757 Sum_probs=24.8
Q ss_pred CCcccccccCcCcCCCCC-CCccCCCCCCC
Q 033320 57 GQNVCSYYSRYGICKFGP-ACKYDHPIHPD 85 (122)
Q Consensus 57 ~~~~C~~f~~~G~C~~G~-~Crf~H~~~~~ 85 (122)
...+|+.|++ |.|..|+ .|+|+|+....
T Consensus 16 ~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~ 44 (89)
T 2rpp_A 16 TLEVCRQFQR-GTCSRSDEECKFAHPPKSC 44 (89)
T ss_dssp EECBCHHHHH-TCCCCCTTTSSSBCCCSSS
T ss_pred hhhhchHHhc-CCCCCCCCCCCCcCCCccc
Confidence 3579999999 9999998 99999998763
No 21
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.97 E-value=0.0002 Score=48.47 Aligned_cols=27 Identities=30% Similarity=0.790 Sum_probs=23.8
Q ss_pred CCCccccccccccccCCCCCCCCCCCCCC
Q 033320 9 RPGQPECSYFLRTGDCKYKSNCKYHHPKN 37 (122)
Q Consensus 9 rp~~~~Cr~f~k~G~C~~G~~C~F~H~~~ 37 (122)
...+++|++|++ |.|.+| +|+|+|...
T Consensus 53 ~~~~~vC~~flk-G~C~r~-~C~y~H~~~ 79 (98)
T 2e5s_A 53 DNTVTVCMDYIK-GRCMRE-KCKYFHPPA 79 (98)
T ss_dssp TCEEEBCHHHHH-TCCCCT-TCCSBCCCH
T ss_pred CCccccchhhcc-CCCCCC-CcCccCChH
Confidence 356889999996 999999 999999964
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=95.78 E-value=0.00023 Score=46.86 Aligned_cols=62 Identities=23% Similarity=0.538 Sum_probs=36.5
Q ss_pred CccccccccccccCCCCCCCCCCCCCCCCCCCCCCccCCC----CCCCC-CCCcccccccCcCcCCCCCCCccCCCCCC
Q 033320 11 GQPECSYFLRTGDCKYKSNCKYHHPKNRIPKSPPCTLSDK----GLPLR-PGQNVCSYYSRYGICKFGPACKYDHPIHP 84 (122)
Q Consensus 11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~~~~~~~~~~~~~~----g~p~~-~~~~~C~~f~~~G~C~~G~~Crf~H~~~~ 84 (122)
....|+||.. |.+ ..|.|.|.... ..|.++.. .-... +....|+|+.. |.. ..|.|.|+...
T Consensus 8 ~~e~CKf~~~---Ctn-~~C~f~Hp~~~----~~Cr~g~~C~~~~C~f~HP~~~~Crf~~~---C~n-~~C~F~Hp~g~ 74 (80)
T 2lhn_A 8 SLEQCKFGTH---CTN-KRCKYRHARSH----IMCREGANCTRIDCLFGHPINEDCRFGVN---CKN-IYCLFRHPPGR 74 (80)
Confidence 4568999973 999 99999998642 11221110 00000 12356777664 765 67888886543
No 23
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.61 E-value=0.00046 Score=53.32 Aligned_cols=27 Identities=33% Similarity=0.971 Sum_probs=24.5
Q ss_pred CcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 58 QNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 58 ~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
..+|.||++ |.|++|..|.|.|..+..
T Consensus 70 ~~~C~ffak-G~C~~G~~C~y~H~lPt~ 96 (240)
T 3u1l_A 70 LFFCLFFAK-GMCCLGPKCEYLHHIPDE 96 (240)
T ss_dssp CSBCHHHHT-TCCSCGGGCSSBBSCCCH
T ss_pred CeEcCcccc-CCCCCCCCCCccCCCCCc
Confidence 469999999 999999999999988764
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.32 E-value=0.0008 Score=51.92 Aligned_cols=26 Identities=27% Similarity=0.585 Sum_probs=22.9
Q ss_pred CccccccccccccCCCCCCCCCCCCCC
Q 033320 11 GQPECSYFLRTGDCKYKSNCKYHHPKN 37 (122)
Q Consensus 11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~ 37 (122)
...+|.||.| |.|++|++|.|+|...
T Consensus 69 ~~~~C~ffak-G~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 69 QLFFCLFFAK-GMCCLGPKCEYLHHIP 94 (240)
T ss_dssp CCSBCHHHHT-TCCSCGGGCSSBBSCC
T ss_pred CCeEcCcccc-CCCCCCCCCCccCCCC
Confidence 4569999997 9999999999999853
No 25
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.74 E-value=0.0016 Score=42.68 Aligned_cols=18 Identities=28% Similarity=0.765 Sum_probs=10.5
Q ss_pred ccccccCcCcCCCCCCCccCCC
Q 033320 60 VCSYYSRYGICKFGPACKYDHP 81 (122)
Q Consensus 60 ~C~~f~~~G~C~~G~~Crf~H~ 81 (122)
+|++++. |.. ..|.|.|+
T Consensus 33 ~Cr~g~~---C~~-~~C~f~HP 50 (80)
T 2lhn_A 33 MCREGAN---CTR-IDCLFGHP 50 (80)
Confidence 5666554 554 55666665
No 26
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=87.14 E-value=0.21 Score=38.43 Aligned_cols=22 Identities=36% Similarity=0.780 Sum_probs=10.8
Q ss_pred cccccccccccCCCCCCCCCCCCC
Q 033320 13 PECSYFLRTGDCKYKSNCKYHHPK 36 (122)
Q Consensus 13 ~~Cr~f~k~G~C~~G~~C~F~H~~ 36 (122)
-+|++|+ .|.|++ .+|+-+|+.
T Consensus 176 HIC~~Fl-~G~C~f-~~CkRsH~~ 197 (229)
T 3u9g_A 176 HICEHFT-RGNCSY-LNCLRSHNL 197 (229)
T ss_dssp CSCHHHH-TTCCCC-SSCSSCCCT
T ss_pred eccchhh-cCCcCC-CCccCccCc
Confidence 3455554 355555 455555554
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=86.49 E-value=0.13 Score=39.36 Aligned_cols=26 Identities=31% Similarity=0.926 Sum_probs=0.0
Q ss_pred CCcccccccCcCcCCCCCCCccCCCCCCC
Q 033320 57 GQNVCSYYSRYGICKFGPACKYDHPIHPD 85 (122)
Q Consensus 57 ~~~~C~~f~~~G~C~~G~~Crf~H~~~~~ 85 (122)
..++|++-.+ |.||.+|+|.|+....
T Consensus 191 ~~~~~~~~~~---~~~~~~~~~~~~~~~~ 216 (223)
T 3v33_A 191 RKQPCPYGRK---CTYGIKCRFFHPERPS 216 (223)
T ss_dssp -----------------------------
T ss_pred CCCCCCCCcc---cccCCcceecCCccCC
Confidence 4678998654 9999999999987654
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=82.91 E-value=0.24 Score=37.91 Aligned_cols=24 Identities=29% Similarity=0.891 Sum_probs=0.0
Q ss_pred CccccccccccccCCCCCCCCCCCCCC
Q 033320 11 GQPECSYFLRTGDCKYKSNCKYHHPKN 37 (122)
Q Consensus 11 ~~~~Cr~f~k~G~C~~G~~C~F~H~~~ 37 (122)
+.++|.|=. +|.||.+|+|.|...
T Consensus 191 ~~~~~~~~~---~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGR---KCTYGIKCRFFHPER 214 (223)
T ss_dssp ---------------------------
T ss_pred CCCCCCCCc---ccccCCcceecCCcc
Confidence 578899864 599999999999864
No 29
>2kqb_A Aprataxin and PNK-like factor; ADP-ribosylation, DNA damage, DNA repair, metal-binding, nucleotide-binding, nucleus, zinc, zinc-finger, lyase; NMR {Homo sapiens} PDB: 2kqc_A 2kqd_A* 2kqe_A*
Probab=50.92 E-value=14 Score=24.39 Aligned_cols=10 Identities=40% Similarity=1.212 Sum_probs=0.0
Q ss_pred CcCCCCCCCc
Q 033320 68 GICKFGPACK 77 (122)
Q Consensus 68 G~C~~G~~Cr 77 (122)
-.|+||.+|-
T Consensus 57 p~C~YG~~CY 66 (89)
T 2kqb_A 57 PECPYGPSCY 66 (89)
T ss_dssp ----------
T ss_pred CCCCCchhhh
Confidence 3578888884
Done!