BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033321
         (122 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2X1D|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1D|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1D|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1D|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1E|A Chain A, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|B Chain B, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|C Chain C, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum In Complex 6-Aminopenicillanic Acid
 pdb|2X1E|D Chain D, The Crystal Structure Of Mature Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum In Complex 6-Aminopenicillanic Acid
          Length = 357

 Score = 31.2 bits (69), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 68  MAITSVCLM--AKAKFSVHSYFDSWNR-----ILLDGFLGGLMSFVLFWT----YP 112
           M  T+ CL+   K +  +    DSWNR      LLDGF G   +F   W     YP
Sbjct: 242 MVHTNHCLLQHGKNEKELDPLPDSWNRHQRMEFLLDGFDGTKQAFAQLWADEDNYP 297


>pdb|2X1C|A Chain A, The Crystal Structure Of Precursor Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1C|B Chain B, The Crystal Structure Of Precursor Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1C|C Chain C, The Crystal Structure Of Precursor Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
 pdb|2X1C|D Chain D, The Crystal Structure Of Precursor Acyl Coenzyme
           A:isopenicillin N Acyltransferase From Penicillium
           Chrysogenum
          Length = 357

 Score = 31.2 bits (69), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 68  MAITSVCLM--AKAKFSVHSYFDSWNR-----ILLDGFLGGLMSFVLFWT----YP 112
           M  T+ CL+   K +  +    DSWNR      LLDGF G   +F   W     YP
Sbjct: 242 MVHTNHCLLQHGKNEKELDPLPDSWNRHQRMEFLLDGFDGTKQAFAQLWADEDNYP 297


>pdb|1TUE|A Chain A, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|D Chain D, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|F Chain F, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|H Chain H, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|K Chain K, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
 pdb|1TUE|M Chain M, The X-Ray Structure Of The Papillomavirus Helicase In
           Complex With Its Molecular Matchmaker E2
          Length = 212

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 29  QSNMKVIYYSRTFLSIIGGVIAGILGFTGLMGFVFYFLIMAITSVCLMAKAKFSVHSYFD 88
            +N    Y+  +F+  I G +   +  T      F+   +  T V ++  A  +  +YFD
Sbjct: 66  PANTGKSYFGMSFIHFIQGAVISFVNSTSH----FWLEPLTDTKVAMLDDATTTCWTYFD 121

Query: 89  SWNRILLDG 97
           ++ R  LDG
Sbjct: 122 TYMRNALDG 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,263,212
Number of Sequences: 62578
Number of extensions: 106934
Number of successful extensions: 306
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 6
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)