BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033324
(122 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ESG|A Chain A, Crystal Structure Of Hutd From Pseudomonas Fluorescens
Sbw25
pdb|3ESG|B Chain B, Crystal Structure Of Hutd From Pseudomonas Fluorescens
Sbw25
Length = 193
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 68 AFWKELDYVKHLWKN---RQELKLEDAGIAALFGLECFAW 104
+ W+ +DYV+ WKN E DAG GLE F W
Sbjct: 12 SVWRAVDYVRMPWKNGGGSTEEITRDAGT----GLEGFGW 47
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 11 KAAEASKFVAKH-GTSYYRQLLEQNKQYIQEPPTVEKCNLLSKQLF 55
KAA K + H T Y RQL K+Y +E P VE + +++F
Sbjct: 233 KAAGVKKVILYHISTRYIRQLKSVIKKYREEMPDVEILYMDPRKVF 278
>pdb|3OPB|A Chain A, Crystal Structure Of She4p
pdb|3OPB|B Chain B, Crystal Structure Of She4p
Length = 778
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 34 NKQYIQEPPTVEKCNLLSKQLFYTR----------LSSIPGRYEAFWKELDYVKHLWKNR 83
NKQ I EP + C L++ L +T L++IP +E + + N
Sbjct: 509 NKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHND 568
Query: 84 QELKLED 90
+++KL D
Sbjct: 569 EQIKLTD 575
>pdb|1DMU|A Chain A, Crystal Structure Of The Restriction Endonuclease Bgli
(E.C.3.1.21.4) Bound To Its Dna Recognition Sequence
Length = 299
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 32 EQNKQYIQEPPTV-EKCNLLSKQLFYTRLSSIPGRYEAFWKELDYVKHLWKNRQELK 87
QNKQY+++ P + EK L L +S A + E +++ W N L
Sbjct: 14 NQNKQYLEDNPEIQEKIELYGLNLLNEVISDNEEEIRADYNEANFLHPFWMNYPPLD 70
>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2DQ4|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase
pdb|2EJV|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
pdb|2EJV|B Chain B, Crystal Structure Of Threonine 3-Dehydrogenase Complexed
With Nad+
Length = 343
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 77 KHLWKNRQELKLEDAGIAALFGLECFAWYCAGEIIGRGFTITG 119
++ W N ++L E A I FG Y + G+ ITG
Sbjct: 130 ENAWVNPKDLPFEVAAILEPFGNAVHTVYAGSGVSGKSVLITG 172
>pdb|2AU1|A Chain A, Crystal Structure Of Group A Streptococcus Mac-1
Orthorhombic Form
Length = 292
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 26 YYRQLLEQNKQYIQEPPTVEKCNLLSKQLFYTR 58
++ Q +Q K+Y++E P +K N +Q+F +
Sbjct: 59 WFDQNKDQIKRYLEEHPEKQKINFNGEQMFDVK 91
>pdb|2AVW|A Chain A, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|B Chain B, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|C Chain C, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|D Chain D, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|E Chain E, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
pdb|2AVW|F Chain F, Crystal Structure Of Monoclinic Form Of Streptococcus
Mac-1
Length = 311
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 26 YYRQLLEQNKQYIQEPPTVEKCNLLSKQLF 55
++ Q +Q K+Y++E P +K N +Q+F
Sbjct: 78 WFDQNKDQIKRYLEEHPEKQKINFNGEQMF 107
>pdb|1Y08|A Chain A, Structure Of The Streptococcal Endopeptidase Ides, A Novel
Cysteine Proteinase With Strict Specificity For Igg
Length = 323
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 26 YYRQLLEQNKQYIQEPPTVEKCNLLSKQLF 55
++ Q +Q K+Y++E P +K N +Q+F
Sbjct: 90 WFDQNKDQIKRYLEEHPEKQKINFNGEQMF 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,558,153
Number of Sequences: 62578
Number of extensions: 131876
Number of successful extensions: 331
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 11
length of query: 122
length of database: 14,973,337
effective HSP length: 84
effective length of query: 38
effective length of database: 9,716,785
effective search space: 369237830
effective search space used: 369237830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)