BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033324
         (122 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O75964|ATP5L_HUMAN ATP synthase subunit g, mitochondrial OS=Homo sapiens GN=ATP5L PE=1
           SV=3
          Length = 103

 Score = 32.3 bits (72), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 26  YYRQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLSSIPGRYEAFWKELDYVKHLWKNRQ- 84
           + R L+E+    +    T  K  L +   +Y ++  +P       + +  +K +  + Q 
Sbjct: 4   FVRNLVEKTPALVNAAVTYSKPRL-ATFWYYAKVELVPPTPAEIPRAIQSLKKIVNSAQT 62

Query: 85  ----ELKLEDAGIAALFGLECFAWYCAGEIIG-RGFTITGYYV 122
               +L +++A +  L   E   W+  GEIIG RG  I GY V
Sbjct: 63  GSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGKRG--IIGYDV 103


>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2
          Length = 2742

 Score = 32.3 bits (72), Expect = 0.88,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 34   NKQYIQEPPTVEKCNLLSKQLFYTRLSSIPGRYEAFWKE 72
            N    Q+ P  E CNLL+  LF      + G  EA W+E
Sbjct: 1426 NTSNPQQTPEEELCNLLTNVLFSVTWRGVEGSAEAAWRE 1464


>sp|Q5RFH0|ATP5L_PONAB ATP synthase subunit g, mitochondrial OS=Pongo abelii GN=ATP5L PE=3
           SV=1
          Length = 103

 Score = 31.6 bits (70), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 26  YYRQLLEQNKQYIQEPPTVEKCNLLSKQLFYTRLSSIPGRYEAFWKELDYVKHLWKNRQ- 84
           + R L+E+    +    T  K  L +   +Y ++  +P       + +  +K +  + Q 
Sbjct: 4   FVRNLVEKTPALVNAAVTYSKPRL-ATFWYYAKVELVPPTPAEIPRAIQGLKKIVNSAQT 62

Query: 85  ----ELKLEDAGIAALFGLECFAWYCAGEIIG-RGFTITGYYV 122
               +L +++A +  L   E   W+  GEIIG RG  I GY V
Sbjct: 63  GSFKQLTVKEAVLNGLVATEVLMWFYVGEIIGKRG--IIGYDV 103


>sp|Q9VAW5|LARP_DROME La-related protein OS=Drosophila melanogaster GN=larp PE=1 SV=5
          Length = 1673

 Score = 30.0 bits (66), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 22/38 (57%)

Query: 65   RYEAFWKELDYVKHLWKNRQELKLEDAGIAALFGLECF 102
            R+ +F+   ++ K ++   + L LEDAG    +GLEC 
Sbjct: 1374 RFWSFFLRENFNKSMYNEFRSLALEDAGNGFRYGLECL 1411


>sp|P0DC25|LGT_STRPQ Prolipoprotein diacylglyceryl transferase OS=Streptococcus pyogenes
           serotype M3 (strain SSI-1) GN=lgt PE=3 SV=1
          Length = 259

 Score = 29.3 bits (64), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 48  NLLSKQLFYTRLSSIPG-RYEAFWKELDYVKHLWKNRQELKLEDAGIAALFGLECFAWYC 106
           + + KQ+F      IP   YE+FW  L +V  +   R+   L D  I A +      WY 
Sbjct: 153 SFIQKQMFIEGSYRIPTFLYESFWNLLGFVIIMMWRRKPKSLLDGEIFAFY----LIWYG 208

Query: 107 AGEIIGRG 114
           +G ++  G
Sbjct: 209 SGRLVIEG 216


>sp|Q1J7Q5|LGT_STRPF Prolipoprotein diacylglyceryl transferase OS=Streptococcus pyogenes
           serotype M4 (strain MGAS10750) GN=lgt PE=3 SV=1
          Length = 259

 Score = 29.3 bits (64), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 48  NLLSKQLFYTRLSSIPG-RYEAFWKELDYVKHLWKNRQELKLEDAGIAALFGLECFAWYC 106
           + + KQ+F      IP   YE+FW  L +V  +   R+   L D  I A +      WY 
Sbjct: 153 SFIQKQMFIEGSYRIPTFLYESFWNLLGFVIIMMWRRKPKSLLDGEIFAFY----LIWYG 208

Query: 107 AGEIIGRG 114
           +G ++  G
Sbjct: 209 SGRLVIEG 216


>sp|P0DC24|LGT_STRP3 Prolipoprotein diacylglyceryl transferase OS=Streptococcus pyogenes
           serotype M3 (strain ATCC BAA-595 / MGAS315) GN=lgt PE=3
           SV=1
          Length = 259

 Score = 29.3 bits (64), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 48  NLLSKQLFYTRLSSIPG-RYEAFWKELDYVKHLWKNRQELKLEDAGIAALFGLECFAWYC 106
           + + KQ+F      IP   YE+FW  L +V  +   R+   L D  I A +      WY 
Sbjct: 153 SFIQKQMFIEGSYRIPTFLYESFWNLLGFVIIMMWRRKPKSLLDGEIFAFY----LIWYG 208

Query: 107 AGEIIGRG 114
           +G ++  G
Sbjct: 209 SGRLVIEG 216


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.136    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,377,920
Number of Sequences: 539616
Number of extensions: 1575238
Number of successful extensions: 3999
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3996
Number of HSP's gapped (non-prelim): 11
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)