Query 033324
Match_columns 122
No_of_seqs 116 out of 132
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 20:53:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rpa_A Katanin P60 ATPase-cont 43.1 59 0.002 21.4 5.3 45 21-79 29-75 (78)
2 1vig_A Vigilin; RNA-binding pr 29.8 15 0.00051 22.9 0.6 11 106-116 15-25 (71)
3 2p2r_A Poly(RC)-binding protei 28.9 13 0.00045 23.2 0.2 11 106-116 15-25 (76)
4 1ec6_A RNA-binding protein NOV 26.7 15 0.00052 23.5 0.2 11 106-116 13-23 (87)
5 2axy_A Poly(RC)-binding protei 26.5 15 0.00053 22.9 0.2 11 106-116 15-25 (73)
6 1wvn_A Poly(RC)-binding protei 25.9 16 0.00053 23.2 0.2 11 106-116 16-26 (82)
7 1dtj_A RNA-binding neurooncolo 25.4 16 0.00054 22.6 0.2 11 106-116 13-23 (76)
8 2ctl_A Vigilin; K homology typ 21.3 24 0.00081 23.4 0.4 11 106-116 27-37 (97)
9 1we8_A Tudor and KH domain con 20.6 23 0.00077 23.6 0.2 11 106-116 25-35 (104)
10 2opv_A KHSRP protein; KH domai 20.2 23 0.00079 22.6 0.1 11 106-116 24-34 (85)
No 1
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=43.12 E-value=59 Score=21.44 Aligned_cols=45 Identities=18% Similarity=0.325 Sum_probs=32.3
Q ss_pred hhhhhhHHHHHHHhhhhh--cCCCChhhHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHH
Q 033324 21 KHGTSYYRQLLEQNKQYI--QEPPTVEKCNLLSKQLFYTRLSSIPGRYEAFWKELDYVKHL 79 (122)
Q Consensus 21 k~~~~~~k~~l~~~~~y~--~~PPt~~k~~~L~k~~fyt~lA~ip~~~~~~~k~v~~~k~~ 79 (122)
..++.||...+++-.+|+ +.+|. .| ..|....+.+..|.+.+|+.
T Consensus 29 dta~~yY~g~~~qI~k~l~~~~d~~-~r-------------~kW~~~~~ei~~E~~~Vk~i 75 (78)
T 2rpa_A 29 DSAMVYYQGVLDQMNKYLYSVKDTH-LR-------------QKWQQVWQEINVEAKQVKDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCHH-HH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHH-HH-------------HhHHHHHHHHHHHHHHHHHH
Confidence 357889999999999998 55543 23 55666666777777777754
No 2
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=29.80 E-value=15 Score=22.92 Aligned_cols=11 Identities=18% Similarity=0.295 Sum_probs=8.8
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
++|.+||+|+.
T Consensus 15 ~ig~iIG~gG~ 25 (71)
T 1vig_A 15 FHRHLIGKSGA 25 (71)
T ss_dssp HHHHHTCSSCC
T ss_pred HhhhhcCCCCc
Confidence 57999999843
No 3
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=28.92 E-value=13 Score=23.17 Aligned_cols=11 Identities=45% Similarity=0.455 Sum_probs=8.8
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|.+|||++.
T Consensus 15 ~vg~iIGkgG~ 25 (76)
T 2p2r_A 15 LIGCIIGRQGA 25 (76)
T ss_dssp HHHHHHCGGGH
T ss_pred HcceEECCCCh
Confidence 57999999843
No 4
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=26.71 E-value=15 Score=23.53 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=8.8
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|.||||++.
T Consensus 13 ~vG~IIGkgG~ 23 (87)
T 1ec6_A 13 LVGAILGKGGK 23 (87)
T ss_dssp HHHHHHCGGGH
T ss_pred HcCeeECCCcH
Confidence 57999999843
No 5
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=26.48 E-value=15 Score=22.91 Aligned_cols=11 Identities=36% Similarity=0.450 Sum_probs=8.7
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|.+|||++.
T Consensus 15 ~ig~iIGkgG~ 25 (73)
T 2axy_A 15 EVGSIIGKKGE 25 (73)
T ss_dssp HHHHHHCGGGH
T ss_pred HeeeEECCCCH
Confidence 47999999843
No 6
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=25.92 E-value=16 Score=23.22 Aligned_cols=11 Identities=45% Similarity=0.455 Sum_probs=8.8
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|.+|||++.
T Consensus 16 ~vg~IIGkgG~ 26 (82)
T 1wvn_A 16 LIGCIIGRQGA 26 (82)
T ss_dssp GHHHHHCGGGH
T ss_pred hccceeCCCch
Confidence 57999999843
No 7
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=25.44 E-value=16 Score=22.58 Aligned_cols=11 Identities=36% Similarity=0.691 Sum_probs=8.7
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|-+|||++.
T Consensus 13 ~vg~IIGkgG~ 23 (76)
T 1dtj_A 13 LVGAILGKGGK 23 (76)
T ss_dssp THHHHHCSTTH
T ss_pred HcceEECCCch
Confidence 57999999843
No 8
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=21.26 E-value=24 Score=23.44 Aligned_cols=11 Identities=36% Similarity=0.362 Sum_probs=8.6
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
++|.||||++.
T Consensus 27 ~ig~IIGkgG~ 37 (97)
T 2ctl_A 27 YHPKIIGRKGA 37 (97)
T ss_dssp THHHHSCSSSC
T ss_pred HhhhcCCCCch
Confidence 57899999843
No 9
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=20.59 E-value=23 Score=23.61 Aligned_cols=11 Identities=55% Similarity=0.842 Sum_probs=8.6
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|.||||++.
T Consensus 25 ~ig~IIGkgG~ 35 (104)
T 1we8_A 25 SVGRIIGRGGE 35 (104)
T ss_dssp THHHHHTTTSH
T ss_pred heeeeECCCCH
Confidence 47999999843
No 10
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=20.22 E-value=23 Score=22.58 Aligned_cols=11 Identities=45% Similarity=0.640 Sum_probs=8.6
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
.+|.+|||++.
T Consensus 24 ~ig~IIGkgG~ 34 (85)
T 2opv_A 24 KAGLVIGKGGE 34 (85)
T ss_dssp THHHHHTTTTH
T ss_pred heeeeECCCCH
Confidence 47999999843
Done!