Query 033324
Match_columns 122
No_of_seqs 116 out of 132
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 20:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033324.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033324hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f76x1 a.61.1.3 (X:1-94) Maso 60.6 11 0.00082 24.1 5.8 76 1-76 1-89 (94)
2 d1us7b_ a.205.1.1 (B:) Hsp90 c 41.3 14 0.0011 26.7 4.2 39 53-91 88-127 (201)
3 d2cpqa1 d.51.1.1 (A:212-289) F 24.7 9.7 0.0007 23.1 0.6 10 106-115 18-27 (78)
4 d1ydxa1 d.287.1.2 (A:1-193) Bi 23.4 43 0.0031 21.0 3.8 33 66-100 153-185 (193)
5 d1e3ha4 d.52.3.1 (A:579-632) P 22.4 8.7 0.00063 22.3 0.0 10 106-115 13-22 (54)
6 d1j4wa2 d.51.1.1 (A:104-174) F 22.0 9 0.00066 22.3 0.0 11 106-116 11-21 (71)
7 d1iqca1 a.3.1.5 (A:1-150) Di-h 21.7 20 0.0015 24.0 1.9 18 40-58 12-29 (150)
8 d2ctja1 d.51.1.1 (A:8-89) Vigi 20.8 12 0.00087 22.2 0.4 11 106-116 20-30 (82)
9 d1nmla1 a.3.1.5 (A:1-166) Di-h 19.5 23 0.0017 24.2 1.8 17 41-58 25-41 (166)
10 d1j4wa1 d.51.1.1 (A:1-74) Far 18.7 16 0.0012 21.1 0.7 11 105-115 12-22 (74)
No 1
>d2f76x1 a.61.1.3 (X:1-94) Mason-Pfizer monkey virus matrix protein {Simian Mason-Pfizer virus [TaxId: 11855]}
Probab=60.56 E-value=11 Score=24.13 Aligned_cols=76 Identities=11% Similarity=0.231 Sum_probs=52.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhhhh---------cCCCChhhHHHHHHHH--hhhh--cccchhHHH
Q 033324 1 MASKLVQLQSKAAEASKFVAKHGTSYYRQLLEQNKQYI---------QEPPTVEKCNLLSKQL--FYTR--LSSIPGRYE 67 (122)
Q Consensus 1 ma~~l~~l~~ka~~~~~~~~k~~~~~~k~~l~~~~~y~---------~~PPt~~k~~~L~k~~--fyt~--lA~ip~~~~ 67 (122)
|.+...+=+.=.+.+-....+.|+.-.+..+.+|-+++ --+-+++.+.++++.+ +|.. --.||...-
T Consensus 1 MGq~~Sk~~~~i~~Lk~lLk~rGvkV~~~~L~~f~~~I~~~cPWFp~~Gtl~~~~W~kvG~~l~~~~~~~~~~~ip~~~~ 80 (94)
T d2f76x1 1 MGQELSQHERYVEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEGTIDIKRWRRVGDCFQDYYNTFGPEKVPVTAF 80 (94)
T ss_dssp CCCSSCHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHCCCCCCCSSCHHHHHHHHHHHHHHHHHHHSCCSSCTHHH
T ss_pred CCccchhhhHHHHHHHHHHHHCCeecCHHHHHHHHHHHHHhCCCccccCCccHHHHHHHHHHHHHHHHHcCCCccCchHH
Confidence 34433333333444444555678888888888888887 2335678899999999 4544 568999999
Q ss_pred HHHHHHHHH
Q 033324 68 AFWKELDYV 76 (122)
Q Consensus 68 ~~~k~v~~~ 76 (122)
++|++|..+
T Consensus 81 ~~W~lIr~~ 89 (94)
T d2f76x1 81 SYWNLIKEL 89 (94)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 999888764
No 2
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.25 E-value=14 Score=26.65 Aligned_cols=39 Identities=28% Similarity=0.469 Sum_probs=29.4
Q ss_pred HHhhhhc-ccchhHHHHHHHHHHHHHHHHhhcccccHHHH
Q 033324 53 QLFYTRL-SSIPGRYEAFWKELDYVKHLWKNRQELKLEDA 91 (122)
Q Consensus 53 ~~fyt~l-A~ip~~~~~~~k~v~~~k~~~~~~~~ltVkea 91 (122)
.+||.|+ ..=|...++|.++|+..++-.+.|.....+|+
T Consensus 88 ~~FF~ki~~~~~~y~~~F~~dv~~~~~Rik~Ra~~~~~e~ 127 (201)
T d1us7b_ 88 RQFFTKIKTADRQYMEGFNDELEAFKERVRGRAKLRIEKA 127 (201)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6799997 45688999999999998887776654444444
No 3
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.71 E-value=9.7 Score=23.14 Aligned_cols=10 Identities=30% Similarity=0.155 Sum_probs=8.4
Q ss_pred HhhhhcccCc
Q 033324 106 CAGEIIGRGF 115 (122)
Q Consensus 106 ~vGEiIGR~f 115 (122)
.+|.+||||+
T Consensus 18 ~ig~vIG~gG 27 (78)
T d2cpqa1 18 LMGLAIGTHG 27 (78)
T ss_dssp HHHHHHTTTT
T ss_pred HHHHHcCCCh
Confidence 5899999984
No 4
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=23.38 E-value=43 Score=21.02 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Q 033324 66 YEAFWKELDYVKHLWKNRQELKLEDAGIAALFGLE 100 (122)
Q Consensus 66 ~~~~~k~v~~~k~~~~~~~~ltVkea~~~~Lv~~E 100 (122)
++.+.+.++..+......++ .+++++.-||+.|
T Consensus 153 l~~ld~~i~~~~~~i~~l~~--~~~~ll~~lft~~ 185 (193)
T d1ydxa1 153 LSVFDERLENLASLIEINRK--LRDEYAHKLFSLD 185 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHccC
Confidence 44444444444443332222 2677777776543
No 5
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]}
Probab=22.35 E-value=8.7 Score=22.29 Aligned_cols=10 Identities=40% Similarity=0.504 Sum_probs=0.0
Q ss_pred HhhhhcccCc
Q 033324 106 CAGEIIGRGF 115 (122)
Q Consensus 106 ~vGEiIGR~f 115 (122)
.+|++||+|+
T Consensus 13 kig~vIG~GG 22 (54)
T d1e3ha4 13 KIGEVIGPKR 22 (54)
T ss_dssp ----------
T ss_pred HeeEEECCcc
Confidence 4789999984
No 6
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.95 E-value=9 Score=22.27 Aligned_cols=11 Identities=45% Similarity=0.613 Sum_probs=8.9
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
++|-||||++.
T Consensus 11 ~vg~IIGk~G~ 21 (71)
T d1j4wa2 11 KTGLIIGKGGE 21 (71)
T ss_dssp THHHHHCGGGH
T ss_pred hcceEECCCCc
Confidence 57999999854
No 7
>d1iqca1 a.3.1.5 (A:1-150) Di-heme cytochrome c peroxidase {Nitrosomonas europaea [TaxId: 915]}
Probab=21.71 E-value=20 Score=23.99 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=13.9
Q ss_pred CCCChhhHHHHHHHHhhhh
Q 033324 40 EPPTVEKCNLLSKQLFYTR 58 (122)
Q Consensus 40 ~PPt~~k~~~L~k~~fyt~ 58 (122)
.|.++++ -+|+|.|||..
T Consensus 12 ~p~~~~~-~~LGk~LF~D~ 29 (150)
T d1iqca1 12 TPENADM-AELGKMLFFDP 29 (150)
T ss_dssp CCSSHHH-HHHHHHHHTCG
T ss_pred CCCCHHH-HHHHHHHhCCc
Confidence 3556666 58999999987
No 8
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.76 E-value=12 Score=22.24 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=8.6
Q ss_pred HhhhhcccCcc
Q 033324 106 CAGEIIGRGFT 116 (122)
Q Consensus 106 ~vGEiIGR~f~ 116 (122)
++|-||||++.
T Consensus 20 ~~~~iIGk~G~ 30 (82)
T d2ctja1 20 LHNSLIGTKGR 30 (82)
T ss_dssp HHHHHHCSSSH
T ss_pred HHhhcCCCCCc
Confidence 57899999843
No 9
>d1nmla1 a.3.1.5 (A:1-166) Di-heme cytochrome c peroxidase {Pseudomonas nautica [TaxId: 2743]}
Probab=19.53 E-value=23 Score=24.21 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=13.6
Q ss_pred CCChhhHHHHHHHHhhhh
Q 033324 41 PPTVEKCNLLSKQLFYTR 58 (122)
Q Consensus 41 PPt~~k~~~L~k~~fyt~ 58 (122)
|.|++| -+|+|.|||..
T Consensus 25 ~~t~ak-veLGk~LFfD~ 41 (166)
T d1nmla1 25 ELTQAK-VELGKMEFFEP 41 (166)
T ss_dssp CCCHHH-HHHHHHHHTCG
T ss_pred CCCHHH-HHHHHHHhcCc
Confidence 557777 58999999965
No 10
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.66 E-value=16 Score=21.08 Aligned_cols=11 Identities=36% Similarity=0.703 Sum_probs=8.9
Q ss_pred HHhhhhcccCc
Q 033324 105 YCAGEIIGRGF 115 (122)
Q Consensus 105 F~vGEiIGR~f 115 (122)
.++|-||||++
T Consensus 12 ~~vg~iIGk~G 22 (74)
T d1j4wa1 12 FAVGIVIGRNG 22 (74)
T ss_dssp HHHHHHHCGGG
T ss_pred HHCCeeECCCC
Confidence 36899999984
Done!