Your job contains 1 sequence.
>033325
MIYPCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTV
PPAVRVFCLKNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK
SK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033325
(122 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2062200 - symbol:AT2G18400 species:3702 "Arabi... 437 3.6e-41 1
TAIR|locus:2207190 - symbol:emb2394 "embryo defective 239... 204 1.8e-16 1
TIGR_CMR|CHY_2294 - symbol:CHY_2294 "ribosomal protein L6... 201 3.7e-16 1
TIGR_CMR|SPO_0500 - symbol:SPO_0500 "ribosomal protein L6... 194 2.0e-15 1
TIGR_CMR|BA_0125 - symbol:BA_0125 "ribosomal protein L6" ... 188 8.8e-15 1
TIGR_CMR|GSU_2842 - symbol:GSU_2842 "ribosomal protein L6... 185 1.8e-14 1
TIGR_CMR|CBU_0253 - symbol:CBU_0253 "ribosomal protein L6... 184 2.3e-14 1
TIGR_CMR|CJE_1860 - symbol:CJE_1860 "ribosomal protein L6... 181 4.9e-14 1
UNIPROTKB|P0AG55 - symbol:rplF "50S ribosomal subunit pro... 175 2.1e-13 1
UNIPROTKB|P46898 - symbol:rplF "50S ribosomal protein L6"... 173 3.4e-13 1
UNIPROTKB|Q9KNZ9 - symbol:rplF "50S ribosomal protein L6"... 171 5.6e-13 1
TIGR_CMR|SO_0246 - symbol:SO_0246 "ribosomal protein L6" ... 171 5.6e-13 1
TIGR_CMR|VC_2581 - symbol:VC_2581 "ribosomal protein L6" ... 171 5.6e-13 1
TIGR_CMR|CPS_0616 - symbol:CPS_0616 "ribosomal protein L6... 169 9.1e-13 1
POMBASE|SPAC12G12.08 - symbol:mrpl6 "mitochondrial riboso... 165 2.4e-12 1
TIGR_CMR|ECH_0424 - symbol:ECH_0424 "ribosomal protein L6... 147 2.0e-10 1
ASPGD|ASPL0000044544 - symbol:AN1770 species:162425 "Emer... 146 4.0e-10 1
UNIPROTKB|P66311 - symbol:rplF "50S ribosomal protein L6"... 144 4.1e-10 1
SGD|S000001190 - symbol:MRPL6 "Mitochondrial ribosomal pr... 144 4.1e-10 1
TIGR_CMR|DET_0489 - symbol:DET_0489 "ribosomal protein L6... 142 6.6e-10 1
TIGR_CMR|APH_0295 - symbol:APH_0295 "ribosomal protein L6... 138 1.8e-09 1
TIGR_CMR|NSE_0281 - symbol:NSE_0281 "ribosomal protein L6... 137 2.2e-09 1
CGD|CAL0005711 - symbol:MRPL6 species:5476 "Candida albic... 132 1.2e-08 1
DICTYBASE|DDB_G0294038 - symbol:mrpl6 "ribosomal protein ... 94 0.00010 1
>TAIR|locus:2062200 [details] [associations]
symbol:AT2G18400 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0015934 "large ribosomal subunit" evidence=ISS] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PRINTS:PR00059 PROSITE:PS00525 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AC006439 UniGene:At.13887 UniGene:At.63473
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 HSSP:P02391 EMBL:AY044317
EMBL:AY088468 IPI:IPI00522811 PIR:H84563 RefSeq:NP_565438.1
ProteinModelPortal:Q9ZPX2 SMR:Q9ZPX2 STRING:Q9ZPX2 PaxDb:Q9ZPX2
PRIDE:Q9ZPX2 EnsemblPlants:AT2G18400.1 GeneID:816355
KEGG:ath:AT2G18400 TAIR:At2g18400 InParanoid:Q9ZPX2 OMA:GYSHEVQ
PhylomeDB:Q9ZPX2 ProtClustDB:CLSN2688231 ArrayExpress:Q9ZPX2
Genevestigator:Q9ZPX2 Uniprot:Q9ZPX2
Length = 102
Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
Identities = 80/93 (86%), Positives = 85/93 (91%)
Query: 20 MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
MEAKFFRFLKIVGVGYKARAE GR LYLKLGY H+VEL VPPAVRVFC KNNVVCC G+
Sbjct: 1 MEAKFFRFLKIVGVGYKARAEEAGRFLYLKLGYSHEVELAVPPAVRVFCFKNNVVCCTGI 60
Query: 80 DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
DK RVHQFAA+VRSCKPPEP+KGKGIMYTDEV+
Sbjct: 61 DKQRVHQFAATVRSCKPPEPYKGKGIMYTDEVV 93
>TAIR|locus:2207190 [details] [associations]
symbol:emb2394 "embryo defective 2394" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0015934 "large ribosomal subunit"
evidence=ISS] [GO:0019843 "rRNA binding" evidence=IEA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006364
"rRNA processing" evidence=RCA] [GO:0009657 "plastid organization"
evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0016020
GO:GO:0006412 GO:GO:0009941 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AC000098 EMBL:AY040077 EMBL:AF360265
EMBL:AY085715 IPI:IPI00527924 PIR:C86186 RefSeq:NP_172011.1
UniGene:At.24632 UniGene:At.68070 ProteinModelPortal:O23049
SMR:O23049 STRING:O23049 PaxDb:O23049 PRIDE:O23049 ProMEX:O23049
EnsemblPlants:AT1G05190.1 GeneID:839273 KEGG:ath:AT1G05190
GeneFarm:69 TAIR:At1g05190 eggNOG:COG0097 HOGENOM:HOG000039903
InParanoid:O23049 KO:K02933 OMA:INNMVVG PhylomeDB:O23049
ProtClustDB:CLSN2681987 EvolutionaryTrace:O23049
Genevestigator:O23049 GermOnline:AT1G05190 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 TIGRFAMs:TIGR03654 Uniprot:O23049
Length = 223
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 39/89 (43%), Positives = 60/89 (67%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L +VGVGY RA +G+ L L LG+ H V++ +P +++V +N + G DK
Sbjct: 126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 183
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
+ QFAA+VR +PPEP+KGKG+ Y+DE++
Sbjct: 184 IGQFAATVRKWRPPEPYKGKGVKYSDEIV 212
>TIGR_CMR|CHY_2294 [details] [associations]
symbol:CHY_2294 "ribosomal protein L6" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 RefSeq:YP_361103.1 HSSP:Q5SHQ3
ProteinModelPortal:Q3A9T1 SMR:Q3A9T1 STRING:Q3A9T1 GeneID:3726911
KEGG:chy:CHY_2294 PATRIC:21277659
BioCyc:CHYD246194:GJCN-2293-MONOMER Uniprot:Q3A9T1
Length = 182
Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
Identities = 41/85 (48%), Positives = 55/85 (64%)
Query: 28 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
L++VGVGY RA +GR L L +GY H VE+ P + + N + G+DK V F
Sbjct: 87 LELVGVGY--RAAKQGRKLVLTVGYSHPVEMDPPEGIEIEVPAQNQIIVKGIDKELVGNF 144
Query: 88 AASVRSCKPPEPFKGKGIMYTDEVI 112
AA++R+ + PEP+KGKGI YTDEVI
Sbjct: 145 AATIRAVREPEPYKGKGIKYTDEVI 169
>TIGR_CMR|SPO_0500 [details] [associations]
symbol:SPO_0500 "ribosomal protein L6" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:YP_165762.1
ProteinModelPortal:Q5LW43 SMR:Q5LW43 GeneID:3195456
KEGG:sil:SPO0500 PATRIC:23374261 Uniprot:Q5LW43
Length = 177
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 42/89 (47%), Positives = 54/89 (60%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGY RA A+G L L LGY HDV+ TVP V V K + G+D+ +
Sbjct: 83 FKKELEITGVGY--RANAQGNTLKLNLGYSHDVDFTVPAGVTVSTPKQTEIVVEGIDQQQ 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
V + AA +R + PEP+KGKGI Y E I
Sbjct: 141 VGEVAAKIREWRSPEPYKGKGIRYKGEFI 169
>TIGR_CMR|BA_0125 [details] [associations]
symbol:BA_0125 "ribosomal protein L6" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 RefSeq:NP_842693.1 RefSeq:YP_016730.1
RefSeq:YP_026411.1 HSSP:P02391 ProteinModelPortal:Q81VR5 SMR:Q81VR5
DNASU:1087011 EnsemblBacteria:EBBACT00000009556
EnsemblBacteria:EBBACT00000015765 EnsemblBacteria:EBBACT00000024025
GeneID:1087011 GeneID:2818227 GeneID:2851257 KEGG:ban:BA_0125
KEGG:bar:GBAA_0125 KEGG:bat:BAS0125 ProtClustDB:PRK05498
BioCyc:BANT260799:GJAJ-136-MONOMER
BioCyc:BANT261594:GJ7F-138-MONOMER HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 Uniprot:Q81VR5
Length = 179
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 40/89 (44%), Positives = 56/89 (62%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGY RA+ +G L L +GY H VE+T + V + G+DK R
Sbjct: 84 FARGLELVGVGY--RAQKQGDKLVLSVGYSHPVEMTPEAGLEVEVPAPTKIVIKGIDKQR 141
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
V +FAA++R+ + PEP+KGKGI Y EV+
Sbjct: 142 VGEFAANIRAVRAPEPYKGKGIRYEGEVV 170
>TIGR_CMR|GSU_2842 [details] [associations]
symbol:GSU_2842 "ribosomal protein L6" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_953885.1
ProteinModelPortal:Q749A2 GeneID:2687150 KEGG:gsu:GSU2842
PATRIC:22028531 BioCyc:GSUL243231:GH27-2808-MONOMER Uniprot:Q749A2
Length = 179
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 43/89 (48%), Positives = 54/89 (60%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L+I GVGY RAEA+G +L L LGY H + +P + V K + G+DK
Sbjct: 83 FERALEINGVGY--RAEAKGDVLNLSLGYSHPINYALPAGIIVEVDKMTKLVVKGIDKEL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
V Q AA +RS + PEP+KGKGI Y DE I
Sbjct: 141 VGQTAAKIRSFRGPEPYKGKGIKYADEKI 169
>TIGR_CMR|CBU_0253 [details] [associations]
symbol:CBU_0253 "ribosomal protein L6" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_819297.1
ProteinModelPortal:Q83ER1 SMR:Q83ER1 GeneID:1208134
KEGG:cbu:CBU_0253 PATRIC:17929199
BioCyc:CBUR227377:GJ7S-259-MONOMER Uniprot:Q83ER1
Length = 178
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 40/87 (45%), Positives = 53/87 (60%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L +VGVGY RA+AEG+ L L +G H V + +P + V + G DK R
Sbjct: 84 FQRKLVMVGVGY--RAKAEGKKLNLTVGLSHPVNIEMPEGITVETPSQTEIIVKGADKQR 141
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDE 110
V Q AA++R +PPEP+KGKGI Y +E
Sbjct: 142 VSQVAANIREIRPPEPYKGKGIRYDNE 168
>TIGR_CMR|CJE_1860 [details] [associations]
symbol:CJE_1860 "ribosomal protein L6" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:YP_179830.1
ProteinModelPortal:Q5HSA5 STRING:Q5HSA5 GeneID:3232487
KEGG:cjr:CJE1860 PATRIC:20045552
BioCyc:CJEJ195099:GJC0-1899-MONOMER Uniprot:Q5HSA5
Length = 178
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 38/89 (42%), Positives = 54/89 (60%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGYKA + G++L L LG+ H + +P + + KN + G DK
Sbjct: 83 FSKTLEINGVGYKAALK--GKVLELSLGFSHPINYDIPEGIEIVVDKNTIAVK-GSDKQV 139
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
V Q AA +R +PPEP+KGKG+ Y+DE I
Sbjct: 140 VGQVAAQIREFRPPEPYKGKGVKYSDERI 168
>UNIPROTKB|P0AG55 [details] [associations]
symbol:rplF "50S ribosomal subunit protein L6"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0046677
"response to antibiotic" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019843 "rRNA
binding" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
EMBL:X01563 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0046677 EMBL:U18997
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM
PDB:2RDO PDBsum:2RDO eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11 PDB:3J12
PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W PDBsum:3J0Y
PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF PDBsum:3UOS
PDB:1EG0 PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N PDB:3I1P PDB:3I1R
PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU PDB:3J01 PDB:3J19
PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD PDB:3OFQ PDB:3OFR
PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T PDB:487D PDB:4GAR
PDB:4GAU PDBsum:1EG0 PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6
PDBsum:1VS8 PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA
PDBsum:2GYC PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM
PDBsum:2QAO PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG
PDBsum:2QBI PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ
PDBsum:2QP1 PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N
PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N PDBsum:3I1P
PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22 PDBsum:3IZT
PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR PDBsum:3OAS
PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ PDBsum:3OFR
PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S PDBsum:3R8T
PDBsum:487D PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05498 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
PIR:D65123 RefSeq:NP_417764.1 RefSeq:YP_492127.1
ProteinModelPortal:P0AG55 SMR:P0AG55 DIP:DIP-35860N IntAct:P0AG55
MINT:MINT-1244940 PaxDb:P0AG55 PRIDE:P0AG55
EnsemblBacteria:EBESCT00000002485 EnsemblBacteria:EBESCT00000014824
GeneID:12934434 GeneID:947803 KEGG:ecj:Y75_p3871 KEGG:eco:b3305
PATRIC:32122042 EchoBASE:EB0862 EcoGene:EG10869
BioCyc:EcoCyc:EG10869-MONOMER BioCyc:ECOL316407:JW3267-MONOMER
EvolutionaryTrace:P0AG55 Genevestigator:P0AG55 Uniprot:P0AG55
Length = 177
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 35/89 (39%), Positives = 53/89 (59%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L++VGVGY RA +G ++ L LG+ H V+ +P + C + G DK
Sbjct: 83 FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
+ Q AA +R+ + PEP+KGKG+ Y DEV+
Sbjct: 141 IGQVAADLRAYRRPEPYKGKGVRYADEVV 169
>UNIPROTKB|P46898 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:224308
"Bacillus subtilis subsp. subtilis str. 168" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AL009126 GenomeReviews:AL009126_GR
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 EMBL:L47971 EMBL:D64125 PIR:B69695
RefSeq:NP_388012.1 ProteinModelPortal:P46898 SMR:P46898
EnsemblBacteria:EBBACT00000001337 GeneID:938229 KEGG:bsu:BSU01310
PATRIC:18971771 GenoList:BSU01310 BioCyc:BSUB:BSU01310-MONOMER
Uniprot:P46898
Length = 179
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 38/89 (42%), Positives = 50/89 (56%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGY RA G L L +GY H VE+ + + V G DK R
Sbjct: 84 FERGLELVGVGY--RASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKER 141
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
V AA++R+ + PEP+KGKGI Y EV+
Sbjct: 142 VGAIAANIRAVRSPEPYKGKGIRYEGEVV 170
>UNIPROTKB|Q9KNZ9 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 PIR:G82057 RefSeq:NP_232209.1
ProteinModelPortal:Q9KNZ9 SMR:Q9KNZ9 DNASU:2615598 GeneID:2615598
KEGG:vch:VC2581 PATRIC:20084188 Uniprot:Q9KNZ9
Length = 177
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 38/87 (43%), Positives = 49/87 (56%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L + GVGY RA +G + L LG+ H VE +P V+ C + G DK
Sbjct: 83 FTKKLVLKGVGY--RAAMKGNAVGLTLGFSHPVEHELPAGVKAECPSQTEIVLTGCDKQV 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDE 110
V Q AA +RS + PEP+KGKGI Y DE
Sbjct: 141 VGQVAADIRSYRAPEPYKGKGIRYADE 167
>TIGR_CMR|SO_0246 [details] [associations]
symbol:SO_0246 "ribosomal protein L6" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 GO:GO:0005840 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HSSP:P02391 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 RefSeq:NP_715886.1
ProteinModelPortal:Q8EK54 SMR:Q8EK54 GeneID:1168129
KEGG:son:SO_0246 PATRIC:23520185 Uniprot:Q8EK54
Length = 177
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R LK+VGVGY RA+ G + L LG+ H + +P V C + G+DK
Sbjct: 83 FERKLKLVGVGY--RAKLVGADIDLTLGFSHPLVHKLPAGVTAECPSQTDIVLRGVDKQL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
+ Q AA +R +PPEP+KGKG+ Y DE +
Sbjct: 141 IGQVAAEIRGYRPPEPYKGKGVRYDDEEV 169
>TIGR_CMR|VC_2581 [details] [associations]
symbol:VC_2581 "ribosomal protein L6" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
eggNOG:COG0097 KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 TIGRFAMs:TIGR03654
ProtClustDB:PRK05498 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
PIR:G82057 RefSeq:NP_232209.1 ProteinModelPortal:Q9KNZ9 SMR:Q9KNZ9
DNASU:2615598 GeneID:2615598 KEGG:vch:VC2581 PATRIC:20084188
Uniprot:Q9KNZ9
Length = 177
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 38/87 (43%), Positives = 49/87 (56%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L + GVGY RA +G + L LG+ H VE +P V+ C + G DK
Sbjct: 83 FTKKLVLKGVGY--RAAMKGNAVGLTLGFSHPVEHELPAGVKAECPSQTEIVLTGCDKQV 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDE 110
V Q AA +RS + PEP+KGKGI Y DE
Sbjct: 141 VGQVAADIRSYRAPEPYKGKGIRYADE 167
>TIGR_CMR|CPS_0616 [details] [associations]
symbol:CPS_0616 "ribosomal protein L6" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 HAMAP:MF_01365_B PANTHER:PTHR11655:SF6
HSSP:Q5SHQ3 RefSeq:YP_267366.1 ProteinModelPortal:Q488Z8 SMR:Q488Z8
STRING:Q488Z8 PRIDE:Q488Z8 GeneID:3522781 KEGG:cps:CPS_0616
PATRIC:21464559 BioCyc:CPSY167879:GI48-703-MONOMER Uniprot:Q488Z8
Length = 177
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 36/89 (40%), Positives = 52/89 (58%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L + GVGY RA+A G+ L L LG+ H ++ +P + V G DKH
Sbjct: 83 FEKKLVLQGVGY--RAKAAGKSLDLSLGFSHPIKHAIPEGITCETPSQTEVTLKGCDKHL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
V Q AA++R+ + PEP+KGKG+ Y DE +
Sbjct: 141 VGQTAANIRAYRKPEPYKGKGVRYVDEYV 169
>POMBASE|SPAC12G12.08 [details] [associations]
symbol:mrpl6 "mitochondrial ribosomal protein subunit
L16 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005762 "mitochondrial large ribosomal subunit"
evidence=ISS] [GO:0006412 "translation" evidence=ISS] [GO:0019843
"rRNA binding" evidence=IEA] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
PomBase:SPAC12G12.08 GO:GO:0005634 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005762 GO:GO:0003735 GO:GO:0032543
GO:GO:0019843 eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 PIR:S62539 RefSeq:NP_592890.1
ProteinModelPortal:Q09865 STRING:Q09865 EnsemblFungi:SPAC12G12.08.1
GeneID:2542846 KEGG:spo:SPAC12G12.08 HOGENOM:HOG000039904
OMA:KRRPEPY OrthoDB:EOG4RZ28K NextBio:20803887 Uniprot:Q09865
Length = 213
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 34/82 (41%), Positives = 54/82 (65%)
Query: 28 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
+K+VG+GY+ +G + +LK+GY +D+ +++P V+V + G+D+ +V QF
Sbjct: 122 IKLVGIGYRTSLN-DGNI-HLKIGYANDILVSIPTDVQVENPTPTSLVLRGIDRQKVTQF 179
Query: 88 AASVRSCKPPEPFKGKGIMYTD 109
AA +RS K PEP+KGKGI Y D
Sbjct: 180 AAKIRSFKKPEPYKGKGI-YVD 200
>TIGR_CMR|ECH_0424 [details] [associations]
symbol:ECH_0424 "ribosomal protein L6" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933
OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6
RefSeq:YP_507242.1 ProteinModelPortal:Q2GH41 STRING:Q2GH41
GeneID:3928038 KEGG:ech:ECH_0424 PATRIC:20576325
BioCyc:ECHA205920:GJNR-425-MONOMER Uniprot:Q2GH41
Length = 178
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 30/78 (38%), Positives = 45/78 (57%)
Query: 28 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
L++ GVGYKA E G L L LG+ H V+ +P + + C+K + G DK +V+
Sbjct: 87 LEVNGVGYKA--EVNGEYLSLSLGFSHGVKYKIPTGIVIQCVKPTQILVKGFDKQKVYMV 144
Query: 88 AASVRSCKPPEPFKGKGI 105
A+ + S + P+KGKGI
Sbjct: 145 ASDICSIRKYNPYKGKGI 162
>ASPGD|ASPL0000044544 [details] [associations]
symbol:AN1770 species:162425 "Emericella nidulans"
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005762
"mitochondrial large ribosomal subunit" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000702 InterPro:IPR002358 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PRINTS:PR00059 PROSITE:PS00525
GO:GO:0006412 EMBL:BN001307 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 EMBL:AACD01000028 eggNOG:COG0097 Gene3D:3.90.930.12
PANTHER:PTHR11655 SUPFAM:SSF56053 HOGENOM:HOG000039904
OrthoDB:EOG4RZ28K OMA:MWGTVRS RefSeq:XP_659374.1
ProteinModelPortal:Q5BCG0 STRING:Q5BCG0
EnsemblFungi:CADANIAT00008416 GeneID:2875587 KEGG:ani:AN1770.2
Uniprot:Q5BCG0
Length = 251
Score = 146 (56.5 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 36/95 (37%), Positives = 48/95 (50%)
Query: 28 LKIVGVGYKARAEAEG----------RLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCC 77
L +VGVGY+A E + + LK GY H +EL +P V+ + +
Sbjct: 149 LSLVGVGYRASIEPTATTVEPEYPGQQFVSLKAGYSHPIELGIPEGVQASTPQPTRILLQ 208
Query: 78 GLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
G DK V QFAA +R + PEP+KGKGI E I
Sbjct: 209 GSDKQVVTQFAAEIREWRKPEPYKGKGIFINGETI 243
>UNIPROTKB|P66311 [details] [associations]
symbol:rplF "50S ribosomal protein L6" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0040007 "growth"
evidence=IMP] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525 GO:GO:0005886
GO:GO:0040007 GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 GO:GO:0005840 EMBL:BX842574
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 OMA:INNMVVG Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 TIGRFAMs:TIGR03654 ProtClustDB:PRK05498
HAMAP:MF_01365_B PANTHER:PTHR11655:SF6 PIR:B70644
RefSeq:NP_215233.1 RefSeq:NP_335164.1 RefSeq:YP_006514063.1
ProteinModelPortal:P66311 SMR:P66311 PRIDE:P66311
EnsemblBacteria:EBMYCT00000000628 EnsemblBacteria:EBMYCT00000070706
GeneID:13318608 GeneID:888433 GeneID:926037 KEGG:mtc:MT0744
KEGG:mtu:Rv0719 KEGG:mtv:RVBD_0719 PATRIC:18123371
TubercuList:Rv0719 Uniprot:P66311
Length = 179
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 31/85 (36%), Positives = 45/85 (52%)
Query: 28 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
++I GVGY R + +G L LGY H V + P + G+DK +V Q
Sbjct: 88 MEIFGVGY--RVQLKGSNLEFALGYSHPVVIEAPEGITFAVQAPTKFTVSGIDKQKVGQI 145
Query: 88 AASVRSCKPPEPFKGKGIMYTDEVI 112
AA++R + P+P+KGKG+ Y E I
Sbjct: 146 AANIRRLRRPDPYKGKGVRYEGEQI 170
>SGD|S000001190 [details] [associations]
symbol:MRPL6 "Mitochondrial ribosomal protein of the large
subunit" species:4932 "Saccharomyces cerevisiae" [GO:0003735
"structural constituent of ribosome" evidence=IEA;IDA;IPI]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0032543 "mitochondrial
translation" evidence=IC] [GO:0005762 "mitochondrial large
ribosomal subunit" evidence=IDA;IPI] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] InterPro:IPR000702
InterPro:IPR002358 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
SGD:S000001190 EMBL:BK006934 GO:GO:0005762 GO:GO:0003735
GO:GO:0032543 GO:GO:0019843 EMBL:U10397 EMBL:X69480 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
HOGENOM:HOG000039904 OrthoDB:EOG4RZ28K PIR:S46764
RefSeq:NP_012017.1 ProteinModelPortal:P32904 SMR:P32904
DIP:DIP-5622N IntAct:P32904 MINT:MINT-503396 STRING:P32904
PaxDb:P32904 EnsemblFungi:YHR147C GeneID:856552 KEGG:sce:YHR147C
CYGD:YHR147c OMA:MWGTVRS NextBio:982360 Genevestigator:P32904
GermOnline:YHR147C Uniprot:P32904
Length = 214
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 33/85 (38%), Positives = 47/85 (55%)
Query: 28 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
L+ VG GY+A+ E +G+ + +K+G L VP + V + G +K +V F
Sbjct: 122 LRFVGTGYRAQLENDGKFVNVKVGASIKQGLDVPEGIVVKTPAPTSLIIEGCNKQQVLLF 181
Query: 88 AASVRSCKPPEPFKGKGIMYTDEVI 112
AA +R PPEP+KGKGI DE I
Sbjct: 182 AAKLRKFHPPEPYKGKGIYVNDETI 206
>TIGR_CMR|DET_0489 [details] [associations]
symbol:DET_0489 "ribosomal protein L6" species:243164
"Dehalococcoides ethenogenes 195" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0015934 "large ribosomal
subunit" evidence=ISS] InterPro:IPR000702 InterPro:IPR019906
InterPro:IPR020040 Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059
PROSITE:PS00525 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 HAMAP:MF_01365_B
PANTHER:PTHR11655:SF6 RefSeq:YP_181233.1 HSSP:P32969
ProteinModelPortal:Q3Z966 STRING:Q3Z966 GeneID:3230241
KEGG:det:DET0489 PATRIC:21608047 BioCyc:DETH243164:GJNF-489-MONOMER
Uniprot:Q3Z966
Length = 182
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+IVGVG RA+ +G + K+GY H V + P + + V G++K
Sbjct: 83 FDKNLEIVGVGM--RADKDGNNIIFKVGYSHTVTVAPPAGITLSVDGTTKVKVSGINKEE 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
V Q AA +RS + P+ + GKGI Y E +
Sbjct: 141 VSQMAAEIRSIRKPDHYMGKGIRYAGEYV 169
>TIGR_CMR|APH_0295 [details] [associations]
symbol:APH_0295 "ribosomal protein L6" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000702
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347
PIRSF:PIRSF002162 PRINTS:PR00059 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0019843
eggNOG:COG0097 HOGENOM:HOG000039903 KO:K02933 OMA:INNMVVG
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
TIGRFAMs:TIGR03654 ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6
RefSeq:YP_504907.1 ProteinModelPortal:Q2GL44 STRING:Q2GL44
GeneID:3929992 KEGG:aph:APH_0295 PATRIC:20949164
BioCyc:APHA212042:GHPM-325-MONOMER Uniprot:Q2GL44
Length = 180
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 20 MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
M + F ++ GVGYK +G L + LG+ H V+ +P + V C K G
Sbjct: 81 MASGFLVEFEVNGVGYKV--VHQGECLSISLGFSHSVKYVIPEGIEVKCTKPTQFTISGS 138
Query: 80 DKHRVHQFAASVRSCKPPEPFKGKGI 105
DK +VH AA + S + +P+KGKGI
Sbjct: 139 DKIKVHMVAADLCSIRRYDPYKGKGI 164
>TIGR_CMR|NSE_0281 [details] [associations]
symbol:NSE_0281 "ribosomal protein L6" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0042255 "ribosome assembly" evidence=ISS]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0097 HOGENOM:HOG000039903
KO:K02933 Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
ProtClustDB:PRK05498 PANTHER:PTHR11655:SF6 RefSeq:YP_506172.1
ProteinModelPortal:Q2GEC4 STRING:Q2GEC4 GeneID:3931705
KEGG:nse:NSE_0281 PATRIC:22680655 OMA:CEVSAGR
BioCyc:NSEN222891:GHFU-308-MONOMER Uniprot:Q2GEC4
Length = 176
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 34/93 (36%), Positives = 51/93 (54%)
Query: 20 MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
+ KF R L + GVGYKA E GR L L LGY H+++ + AV + +K +
Sbjct: 78 LRKKFQRRLVLNGVGYKA--EVRGRYLILYLGYTHNIKYFIFDAVSITAVKPTELLVESS 135
Query: 80 DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
DKH + + + S + +P+KGKGI +D V+
Sbjct: 136 DKHVLGLVVSDLCSLRRYDPYKGKGIFPSDVVM 168
>CGD|CAL0005711 [details] [associations]
symbol:MRPL6 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005762 "mitochondrial large ribosomal
subunit" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000702 InterPro:IPR002358
InterPro:IPR019906 InterPro:IPR020040 Pfam:PF00347 PRINTS:PR00059
PROSITE:PS00525 CGD:CAL0005711 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 EMBL:AACQ01000039 eggNOG:COG0097
Gene3D:3.90.930.12 PANTHER:PTHR11655 SUPFAM:SSF56053
RefSeq:XP_718643.1 ProteinModelPortal:Q5AAK3 STRING:Q5AAK3
GeneID:3639724 KEGG:cal:CaO19.7486 Uniprot:Q5AAK3
Length = 233
Score = 132 (51.5 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/89 (37%), Positives = 48/89 (53%)
Query: 28 LKIVGVGYKARAEAEGR----LLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
+K VG GY+A E + + ++ LK+G +L +P ++V + G DK +
Sbjct: 137 VKFVGTGYRAILEKDPQTGEDIISLKIGLPFTPKLKIPKGLKVSSPNPARLVIEGSDKQQ 196
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVI 112
V FAA +R K PEP+KGKGI DE I
Sbjct: 197 VKLFAAFIREHKKPEPYKGKGIFVDDEKI 225
>DICTYBASE|DDB_G0294038 [details] [associations]
symbol:mrpl6 "ribosomal protein L6, mitochondrial"
species:44689 "Dictyostelium discoideum" [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR000702 InterPro:IPR019906 InterPro:IPR020040
Pfam:PF00347 PIRSF:PIRSF002162 PRINTS:PR00059 PROSITE:PS00525
dictyBase:DDB_G0294038 GO:GO:0005739 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB000109 GenomeReviews:AB000109_GR GO:GO:0019843
EMBL:D63523 eggNOG:COG0097 Gene3D:3.90.930.12 PANTHER:PTHR11655
SUPFAM:SSF56053 PIR:T43779 RefSeq:NP_050100.1
ProteinModelPortal:O21037 STRING:O21037 GeneID:2193925
KEGG:ddi:DidioMp33 Uniprot:O21037
Length = 170
Score = 94 (38.1 bits), Expect = 0.00010, P = 0.00010
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 28 LKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87
LK+VG+G+ G L L +GY H +P V V L+ + + ++K +V F
Sbjct: 81 LKLVGLGFVVHKV--GNTLVLDVGYSHYRSCLIPKEV-VVKLEGSQIILYSINKEKVTTF 137
Query: 88 AASVRSCKPPEPFKGKGIMYTDEVI 112
A+ +++ K +KG GI+ +E I
Sbjct: 138 ASLLKTFKKINMYKGTGILGINEKI 162
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.330 0.145 0.470 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 122 112 0.00091 102 3 11 22 0.37 30
29 0.43 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 543 (58 KB)
Total size of DFA: 120 KB (2079 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 10.33u 0.12s 10.45t Elapsed: 00:00:01
Total cpu time: 10.34u 0.12s 10.46t Elapsed: 00:00:01
Start: Fri May 10 23:22:40 2013 End: Fri May 10 23:22:41 2013