BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033325
(122 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial OS=Marchantia polymorpha
GN=RPL6 PE=3 SV=2
Length = 101
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 81/101 (80%)
Query: 20 MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
MEAKFF FL+I+GVGYKA A+G +LYLKLG+ H++ L V P+VRVFCLK N++CC G+
Sbjct: 1 MEAKFFCFLEIIGVGYKASTNAQGSILYLKLGFSHEIRLQVTPSVRVFCLKPNLICCTGM 60
Query: 80 DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
D +V QFAA V+SCKPPE +KGKGI Y +E+I KK GKKK
Sbjct: 61 DHQKVTQFAAIVKSCKPPEVYKGKGIQYRNEIIHKKQGKKK 101
>sp|Q1GPB4|RL6_SPHAL 50S ribosomal protein L6 OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=rplF PE=3 SV=1
Length = 177
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + F + L+I GVGY RA A+G+ L L+LGY HDV+ VP + + N +
Sbjct: 76 VTGVTEGFTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFAVPDGIEIKTPDNTTIEI 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G+DK +V Q AA +R + PEP+KGKGI Y E I +K GKKK
Sbjct: 134 SGIDKQQVGQVAAEIRRWRKPEPYKGKGIKYRGEYIFRKEGKKK 177
>sp|Q28UT9|RL6_JANSC 50S ribosomal protein L6 OS=Jannaschia sp. (strain CCS1) GN=rplF
PE=3 SV=1
Length = 177
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + F + L+I GVGY RA+ +G +L L LGY HDV+ TVP V V C KN V
Sbjct: 76 VTGVTDGFKKELEITGVGY--RAQMQGNVLKLSLGYSHDVDFTVPEGVTVTCPKNTEVII 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G D+ V Q AA++R + PEP+KGKGI Y E I +K GKKK
Sbjct: 134 EGNDQQLVGQVAANIREWRAPEPYKGKGIRYKGEYIFRKEGKKK 177
>sp|Q38US6|RL6_LACSS 50S ribosomal protein L6 OS=Lactobacillus sakei subsp. sakei
(strain 23K) GN=rplF PE=3 SV=1
Length = 177
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 2/95 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L ++GVGY RA+ +G+ L L +GY H VE+ P V V N + G+ K +
Sbjct: 82 FKKTLDLIGVGY--RAQLKGKTLVLNVGYSHPVEMEAPEGVNVEVPSNTNIIISGISKQK 139
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
V QFAA +R +PPEP+KGKGI YTDE +++K GK
Sbjct: 140 VGQFAAEIRDVRPPEPYKGKGIRYTDEHVRRKEGK 174
>sp|Q8EUC8|RL6_MYCPE 50S ribosomal protein L6 OS=Mycoplasma penetrans (strain HF-2)
GN=rplF PE=3 SV=1
Length = 183
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 49/109 (44%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Query: 10 NLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCL 69
N L + + + LKIVGVGYKA G + L LGY H ++L +P + V C
Sbjct: 70 NANINNALIGVNSGHTKKLKIVGVGYKA--AVNGNKINLNLGYSHPIDLEIPAGLNVTCP 127
Query: 70 KNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
+ V G DK V QFAA +RS +PPEP+KGKG+ Y++EVI +KVGK
Sbjct: 128 QATEVVITGADKAVVGQFAAVIRSKRPPEPYKGKGVAYSNEVIIRKVGK 176
>sp|Q2N9C6|RL6_ERYLH 50S ribosomal protein L6 OS=Erythrobacter litoralis (strain
HTCC2594) GN=rplF PE=3 SV=1
Length = 177
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGY RA+A+G+ L L+LGY HDV++ VP + V V G+DK
Sbjct: 83 FSKTLEISGVGY--RAQAQGKTLKLQLGYSHDVDIAVPEGLEVKTPDQTTVIISGIDKQA 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R + PEP+KGKGI Y E + +K GKKK
Sbjct: 141 VGQLAAEIRQWRKPEPYKGKGIKYQGEYVFRKEGKKK 177
>sp|Q4G353|RK6_EMIHU 50S ribosomal protein L6, chloroplastic OS=Emiliania huxleyi
GN=rpl6 PE=3 SV=1
Length = 181
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + + + + L I GVGY RA+ +G+ L L +GY H V++ PPA+ V +
Sbjct: 78 VTGVSSGWHKKLTIAGVGY--RAQLDGKDLILNMGYSHPVKMVTPPALSVSVESPTSITV 135
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
GL+K V +FAA +RS +PPEP+KGKGI Y EVI++K GK K
Sbjct: 136 SGLEKEAVGEFAAKIRSVRPPEPYKGKGIAYEGEVIRRKAGKTGKK 181
>sp|B2IK77|RL6_BEII9 50S ribosomal protein L6 OS=Beijerinckia indica subsp. indica
(strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplF PE=3
SV=1
Length = 177
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L+I GVGYKA +G+ L L LGY HD+ +P + + K V G+DK R
Sbjct: 83 FERKLEITGVGYKA--AVQGKNLQLSLGYSHDISFPIPDGIAIAAPKPTEVSITGIDKQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R+ +PPEP+KGKG+ Y E I +K GKKK
Sbjct: 141 VGQIAAEIRALRPPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|A6QCR3|RL6_SULNB 50S ribosomal protein L6 OS=Sulfurovum sp. (strain NBC37-1) GN=rplF
PE=3 SV=1
Length = 178
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 65/103 (63%), Gaps = 3/103 (2%)
Query: 20 MEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGL 79
++ + + L+I GVGY RA EG+ L L+LG+ HDV +P + + KN ++ G
Sbjct: 79 LDKGYSKSLEINGVGY--RAAVEGKTLKLQLGFSHDVNFEIPEGLDIKVDKN-IITVSGT 135
Query: 80 DKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
DK V Q AA +R+ +PPEP+KGKG+ YTDEVI +K GK K
Sbjct: 136 DKQAVGQAAAEIRAYRPPEPYKGKGVKYTDEVIIRKAGKAAGK 178
>sp|Q2G8W5|RL6_NOVAD 50S ribosomal protein L6 OS=Novosphingobium aromaticivorans (strain
DSM 12444) GN=rplF PE=3 SV=1
Length = 177
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + + + L+I GVGY RA A+G+ L L+LGY HDV+ VP + + N V
Sbjct: 76 VTGVTQGYTKVLEITGVGY--RANAQGKNLKLQLGYSHDVDFPVPEGIEIKTPDNTTVEI 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G+DK +V Q AA +R + PEP+KGKGI Y E I +K GKKK
Sbjct: 134 SGIDKQKVGQVAAEIRRWRKPEPYKGKGIKYRGEFIFRKEGKKK 177
>sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana
GN=RPL6 PE=1 SV=1
Length = 223
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 65/95 (68%), Gaps = 2/95 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L +VGVGY RA +G+ L L LG+ H V++ +P +++V +N + G DK
Sbjct: 126 FEKKLILVGVGY--RATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSE 183
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
+ QFAA+VR +PPEP+KGKG+ Y+DE++++K GK
Sbjct: 184 IGQFAATVRKWRPPEPYKGKGVKYSDEIVRRKEGK 218
>sp|Q2RQX5|RL6_RHORT 50S ribosomal protein L6 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplF PE=3 SV=1
Length = 177
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 64/97 (65%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGYKA A+G++L L LG+ HDV+ +P +++ N + G+DK R
Sbjct: 83 FSRKLELVGVGYKA--AAQGKVLKLSLGFSHDVDFPIPEDLKITTPAPNQIEISGVDKQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q A+ +RS + PEP+KGKG+ Y E I +K GKKK
Sbjct: 141 VGQIASEIRSYRSPEPYKGKGVKYAGEQILRKEGKKK 177
>sp|A1TYL2|RL6_MARAV 50S ribosomal protein L6 OS=Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8) GN=rplF PE=3 SV=1
Length = 177
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 65/104 (62%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + + R L++ GVGY RA+A+G+ L L LG+ H VE +P V N V
Sbjct: 76 VTGVSTGWERKLQLTGVGY--RAQAQGKKLNLTLGFSHPVEYELPEGVTAETPSNTEVVI 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G+DK +V Q AA +R+ +PPEP+KGKG+ Y DE +++K KKK
Sbjct: 134 RGIDKQQVGQVAAEIRAFRPPEPYKGKGVRYADEQVRRKEAKKK 177
>sp|A4WVJ3|RL6_RHOS5 50S ribosomal protein L6 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rplF PE=3 SV=1
Length = 177
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + A F + L+I GVGY RA+ G +L L LGY HDV VP V V K +
Sbjct: 76 VTGVTAGFKKELEITGVGY--RAQMAGNVLKLSLGYSHDVNFEVPAGVTVTTPKQTEITV 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G+D+ V Q AA++R + PEP+KGKGI Y DE I +K GKKK
Sbjct: 134 EGIDQQLVGQVAANIREWRRPEPYKGKGIRYKDEFIFRKEGKKK 177
>sp|Q3SSV1|RL6_NITWN 50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain Nb-255
/ ATCC 25391) GN=rplF PE=3 SV=1
Length = 177
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I+GVGY RA +G+ L L LGY HDV VP + + K + G D R
Sbjct: 83 FEKKLEIIGVGY--RAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y DE I +K GKKK
Sbjct: 141 VGQVAAEIRGYRPPEPYKGKGVKYADETIFRKEGKKK 177
>sp|Q5LW43|RL6_RUEPO 50S ribosomal protein L6 OS=Ruegeria pomeroyi (strain ATCC 700808 /
DSM 15171 / DSS-3) GN=rplF PE=3 SV=1
Length = 177
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGY RA A+G L L LGY HDV+ TVP V V K + G+D+ +
Sbjct: 83 FKKELEITGVGY--RANAQGNTLKLNLGYSHDVDFTVPAGVTVSTPKQTEIVVEGIDQQQ 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V + AA +R + PEP+KGKGI Y E I +K GKKK
Sbjct: 141 VGEVAAKIREWRSPEPYKGKGIRYKGEFIFRKDGKKK 177
>sp|Q1QN15|RL6_NITHX 50S ribosomal protein L6 OS=Nitrobacter hamburgensis (strain X14 /
DSM 10229) GN=rplF PE=3 SV=1
Length = 177
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+IVGVGY RA +G+ L L LGY HDV +P + + K + G D R
Sbjct: 83 FEKKLEIVGVGY--RAALQGKTLQLALGYSHDVSYAIPEGITIAVPKPTEITIAGNDAQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y DE I +K GKKK
Sbjct: 141 VGQVAAEIRGYRPPEPYKGKGVKYADEFIFRKEGKKK 177
>sp|A7HM37|RL6_FERNB 50S ribosomal protein L6 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplF PE=3 SV=1
Length = 184
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/96 (48%), Positives = 59/96 (61%), Gaps = 2/96 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+IVGVGY RA+ +G L + LGY H VE VP V+V N + G+DK R
Sbjct: 90 FKKELEIVGVGY--RAQLQGNKLIMNLGYAHQVEFDVPADVKVEVPAPNKIIVSGIDKQR 147
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKK 119
V Q AA +R + P P+ GKGI Y DEV+K K GKK
Sbjct: 148 VGQVAADIRKWREPNPYSGKGIKYVDEVLKLKEGKK 183
>sp|Q3J8S9|RL6_NITOC 50S ribosomal protein L6 OS=Nitrosococcus oceani (strain ATCC 19707
/ NCIMB 11848) GN=rplF PE=3 SV=1
Length = 178
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGY RA+ +GR L L LGY H VE T P + + + G DK +
Sbjct: 84 FERRLQLVGVGY--RAQLQGRKLVLSLGYSHPVEFTAPEGLTIEVPSPTEIIVKGYDKQQ 141
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA++R +PPEP+KGKG+ Y DEV+ +K KKK
Sbjct: 142 VGQAAANIRRFRPPEPYKGKGVRYADEVVVRKEAKKK 178
>sp|B1WQS5|RL6_CYAA5 50S ribosomal protein L6 OS=Cyanothece sp. (strain ATCC 51142)
GN=rplF PE=3 SV=1
Length = 179
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L I GVGY RA+A+G L L +GY VE+T+P + V N V G+DK
Sbjct: 83 FEKRLNIQGVGY--RAQAQGSKLTLNVGYSKPVEMTMPQGINVAVENNTQVVVSGIDKEI 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
V AA +R +PPEP+KGKGI Y DE +++K GK K
Sbjct: 141 VGNIAAKIRGVRPPEPYKGKGIRYQDEYVRRKAGKAGKK 179
>sp|A5V5Y7|RL6_SPHWW 50S ribosomal protein L6 OS=Sphingomonas wittichii (strain RW1 /
DSM 6014 / JCM 10273) GN=rplF PE=3 SV=1
Length = 177
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + + + L+I GVGY RA +G+ L L+LGY HDV+ +P + + V
Sbjct: 76 ITGVTEGYSKTLQITGVGY--RANVQGKNLKLQLGYSHDVDFAIPEGITIATPDQTTVQI 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G+DK +V Q AA +R + PEP+KGKGI Y E I +K GKKK
Sbjct: 134 SGIDKQKVGQVAAEIRRWRKPEPYKGKGIKYAGEYIFRKEGKKK 177
>sp|Q3J5Q7|RL6_RHOS4 50S ribosomal protein L6 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rplF PE=3 SV=1
Length = 177
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + + F + L+I GVGY RA+ G +L L LGY HDV VP V V K +
Sbjct: 76 VTGVTSGFKKELEISGVGY--RAQMAGNVLKLSLGYSHDVNFEVPAGVTVTTPKQTEITV 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G+D+ V Q AA++R + PEP+KGKGI Y DE I +K GKKK
Sbjct: 134 EGIDQQLVGQVAANIREWRRPEPYKGKGIRYKDEFIFRKEGKKK 177
>sp|A3PGM6|RL6_RHOS1 50S ribosomal protein L6 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rplF PE=3 SV=1
Length = 177
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/104 (46%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + + F + L+I GVGY RA+ G +L L LGY HDV VP V V K +
Sbjct: 76 VTGVTSGFKKELEISGVGY--RAQMAGNVLKLSLGYSHDVNFEVPAGVTVTTPKQTEITV 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G+D+ V Q AA++R + PEP+KGKGI Y DE I +K GKKK
Sbjct: 134 EGIDQQLVGQVAANIREWRRPEPYKGKGIRYKDEFIFRKEGKKK 177
>sp|Q6F1X9|RL6_MESFL 50S ribosomal protein L6 OS=Mesoplasma florum (strain ATCC 33453 /
NBRC 100688 / NCTC 11704 / L1) GN=rplF PE=3 SV=1
Length = 180
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 63/113 (55%), Gaps = 2/113 (1%)
Query: 10 NLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCL 69
N + L + F + L I GVGY RA G L L LGY H VE T+P + V C
Sbjct: 70 NSLLQGMLIGVSEGFKKTLDINGVGY--RAALAGSKLNLSLGYSHPVEYTIPQGITVECP 127
Query: 70 KNNVVCCCGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
K + G+DK V Q AA +RS + PEP+KGKGI Y+DE+I +K GK K
Sbjct: 128 KPTQIIISGIDKQVVGQVAAEIRSYRRPEPYKGKGIKYSDEIIIRKEGKAAGK 180
>sp|P49548|RK6_ODOSI 50S ribosomal protein L6, chloroplastic OS=Odontella sinensis
GN=rpl6 PE=3 SV=1
Length = 179
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + +F L + GVGY RA +G + L LGY H VEL +P + V ++N +
Sbjct: 76 VTGVSEQFQLTLNLQGVGY--RASVQGNSIILNLGYSHPVELVIPEGISVEVVQNTTINL 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
DK + FA+++RS +PPEP+KGKGI+Y E++K+K GK K
Sbjct: 134 KACDKGNLGLFASNIRSWRPPEPYKGKGILYKGEIVKRKAGKSGKK 179
>sp|Q5FM76|RL6_LACAC 50S ribosomal protein L6 OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=rplF PE=3 SV=1
Length = 176
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
+ + LK++GVGY RA+A+G + L +GY H V LT P V V V G+ K
Sbjct: 81 YKKTLKLIGVGY--RAQAQGNKITLNVGYSHPVVLTAPEGVSVKATSATDVEVEGVSKQD 138
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
V QFAA +R+ +PPEP+KGKGI Y DE +++K GK
Sbjct: 139 VGQFAAEIRAVRPPEPYKGKGIRYVDEYVRRKEGK 173
>sp|B0UHV4|RL6_METS4 50S ribosomal protein L6 OS=Methylobacterium sp. (strain 4-46)
GN=rplF PE=3 SV=1
Length = 177
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGY RA G++L L LGY HDVE +P + + + + G+DK R
Sbjct: 83 FEKKLEINGVGY--RAAVAGKVLKLSLGYSHDVEYEIPAGITITTPRPVEIIVAGIDKQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R + PEP+KGKG+ Y+DE I +K GKKK
Sbjct: 141 VGQIAAEIREYRGPEPYKGKGVKYSDEFIFRKEGKKK 177
>sp|B8ELE8|RL6_METSB 50S ribosomal protein L6 OS=Methylocella silvestris (strain BL2 /
DSM 15510 / NCIMB 13906) GN=rplF PE=3 SV=1
Length = 177
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L+I GVGYKA G+ L L LG+ HDV +P + + K V G+DK +
Sbjct: 83 FERKLEITGVGYKA--AVSGKNLQLSLGFSHDVTFPIPDGISIVAAKPTEVAISGIDKRQ 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q A+ +R+ +PPEP+KGKG+ Y E I +K GKKK
Sbjct: 141 VGQIASEIRALRPPEPYKGKGVKYAGEFIFRKEGKKK 177
>sp|Q5NQ50|RL6_ZYMMO 50S ribosomal protein L6 OS=Zymomonas mobilis subsp. mobilis
(strain ATCC 31821 / ZM4 / CP4) GN=rplF PE=3 SV=1
Length = 177
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
+ + L+I GVGY RA ++G+ L L+LGY HD++ +P + + + V G+DK +
Sbjct: 83 YSKTLQITGVGY--RAASQGKTLKLQLGYSHDIDFAIPEGITIQTPEPTTVNISGIDKQK 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R + PEP+KGKGI Y E I +K GKKK
Sbjct: 141 VGQVAAEIRRWRRPEPYKGKGIKYAGEFIFRKEGKKK 177
>sp|B2A4F4|RL6_NATTJ 50S ribosomal protein L6 OS=Natranaerobius thermophilus (strain
ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplF PE=3
SV=1
Length = 178
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L+IVGVGY RA+ +G+ L L +GY H V + P V + KNN + G DK
Sbjct: 83 FERHLEIVGVGY--RAQMQGKNLVLNVGYSHPVTIEPPEGVEIEVPKNNQIIVKGTDKEV 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
V Q AA +R+ + PEP+KGKGI Y +E I +KVGK
Sbjct: 141 VGQVAARIRAVRKPEPYKGKGIKYAEEQIIRKVGK 175
>sp|Q2JQN4|RL6_SYNJA 50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab)
GN=rplF PE=3 SV=1
Length = 181
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGY RA +G L L +GY H VE+ PP +++ NNV+ G+DK
Sbjct: 83 FERRLELVGVGY--RASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKEL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKK 114
V AA +R+ +PPEP+KGKGI Y E +++
Sbjct: 141 VGNTAARIRAVRPPEPYKGKGIRYVGEQVRR 171
>sp|Q0SN14|RL6_BORAP 50S ribosomal protein L6 OS=Borrelia afzelii (strain PKo) GN=rplF
PE=3 SV=1
Length = 180
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/95 (47%), Positives = 59/95 (62%), Gaps = 2/95 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L I G+GY RAE +G L+L LGY E +P V V N + G+DK +
Sbjct: 83 FSKSLTINGIGY--RAEQQGNSLFLSLGYSTQFEYVIPDGVSVKLDGNTKISVEGIDKFK 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
V Q AA +RS K PEP+KGKGI Y +E+I++KVGK
Sbjct: 141 VGQVAAEIRSLKKPEPYKGKGIKYDNEIIRRKVGK 175
>sp|Q2W2K6|RL6_MAGSA 50S ribosomal protein L6 OS=Magnetospirillum magneticum (strain
AMB-1 / ATCC 700264) GN=rplF PE=3 SV=1
Length = 177
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F L+I GVGY RA EG+ L L+LGY HD+E +P V + C K + G DK +
Sbjct: 83 FTVNLEINGVGY--RAAVEGKSLKLQLGYSHDIEYPIPDDVTMKCEKPTAISISGRDKRQ 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R+ + PEP+KGKGI Y E I +K GKKK
Sbjct: 141 VGQIAAEIRAFRGPEPYKGKGIKYETETILRKEGKKK 177
>sp|Q1R0G0|RL6_CHRSD 50S ribosomal protein L6 OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=rplF PE=3 SV=1
Length = 176
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + F + L+I GVGY RA+A G L L LG+ H VE +P V KN +
Sbjct: 75 VTGVSEGFTKSLEINGVGY--RAQASGNTLNLTLGFSHPVEYKLPEGVTAETPKNTTIVL 132
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
DK ++ Q AA +R+ +PPEP+KGKGI Y DE +++K KKK
Sbjct: 133 KSADKQQLGQVAAEIRAFRPPEPYKGKGIRYGDEEVRRKEAKKK 176
>sp|Q211G3|RL6_RHOPB 50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplF PE=3 SV=1
Length = 177
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L I GVGY RA +G+ L L LGY HDV +P + + K + G D R
Sbjct: 83 FEKKLDITGVGY--RAALQGKKLQLALGYSHDVVYDIPDGITITVPKPTEIFISGNDSQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +RS +PPEP+KGKG+ Y+DE I +K GKKK
Sbjct: 141 VGQVAAEIRSYRPPEPYKGKGVRYSDEFIFRKEGKKK 177
>sp|B8ISA0|RL6_METNO 50S ribosomal protein L6 OS=Methylobacterium nodulans (strain
ORS2060 / LMG 21967) GN=rplF PE=3 SV=1
Length = 177
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGY RA G++L L LGY HD+E +P + + + + G+DK R
Sbjct: 83 FEKKLEINGVGY--RAAVAGKVLKLSLGYSHDIEYEIPAGITITTPRPVEIIVAGIDKQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R + PEP+KGKG+ Y DE I +K GKKK
Sbjct: 141 VGQIAAEIREYRSPEPYKGKGVKYADEFIFRKEGKKK 177
>sp|A8YXM0|RL6_LACH4 50S ribosomal protein L6 OS=Lactobacillus helveticus (strain DPC
4571) GN=rplF PE=3 SV=1
Length = 176
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
+ + LK++GVGY RA+A+G + L +GY H V LT P V V V G+ K
Sbjct: 81 YKKTLKLIGVGY--RAQAQGNKVTLNVGYSHPVVLTAPEGVTVKATSATDVEVEGVSKQD 138
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
V QFAA +R+ +PPEP+KGKGI Y DE +++K GK
Sbjct: 139 VGQFAAEIRAVRPPEPYKGKGIRYVDEYVRRKEGK 173
>sp|Q3K603|RL6_PSEPF 50S ribosomal protein L6 OS=Pseudomonas fluorescens (strain Pf0-1)
GN=rplF PE=3 SV=1
Length = 177
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGYKA +A+G++L L LG+ H V+ +P + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGQVLNLALGFSHPVDYELPEGITAETPSQTDILIKGIDKQL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y DEV+++K KKK
Sbjct: 141 VGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177
>sp|B6JEY0|RL6_OLICO 50S ribosomal protein L6 OS=Oligotropha carboxidovorans (strain
ATCC 49405 / DSM 1227 / OM5) GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGY RA +G+ L L LGY HDV VP + + K + G+D R
Sbjct: 83 FEKKLEITGVGY--RAALQGKNLQLSLGYSHDVVYPVPEGITITVPKPTEITVAGIDSQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y +E I +K GKKK
Sbjct: 141 VGQVAAEIRGYRPPEPYKGKGVKYANEFIFRKEGKKK 177
>sp|Q134U4|RL6_RHOPS 50S ribosomal protein L6 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 60/97 (61%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGY RA +G+ L L LGY HDV +P + + K + G+D +
Sbjct: 83 FEKKLEITGVGY--RASLQGKKLQLALGYSHDVIYDIPEGITITVPKPTEINVVGIDSQK 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y+DE I +K GKKK
Sbjct: 141 VGQVAAEIRDYRPPEPYKGKGVRYSDEFIFRKEGKKK 177
>sp|Q661C7|RL6_BORGA 50S ribosomal protein L6 OS=Borrelia garinii (strain PBi) GN=rplF
PE=3 SV=1
Length = 180
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/95 (48%), Positives = 58/95 (61%), Gaps = 2/95 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L I G+GY R E +G L+L LGY E VP V V N + G+DK +
Sbjct: 83 FSKSLTINGIGY--RVEQQGNSLFLNLGYSTQFEYVVPDGVSVKLDGNTKISVEGIDKFK 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGK 118
V Q AA +RS K PEP+KGKGI Y +EVI++KVGK
Sbjct: 141 VGQVAAEIRSLKKPEPYKGKGIKYDNEVIRRKVGK 175
>sp|A9KJH9|RL6_CLOPH 50S ribosomal protein L6 OS=Clostridium phytofermentans (strain
ATCC 700394 / DSM 18823 / ISDg) GN=rplF PE=3 SV=1
Length = 180
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 63/106 (59%), Gaps = 2/106 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + + + L+I GVGY RA G+ L L LGY H V + P V N +
Sbjct: 77 VTGVTTGYQKVLEINGVGY--RAAKNGKELTLTLGYSHPVVMKDPEGVETILEGQNKITV 134
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
G+DK +V Q+AA +R + PEP+KGKGI Y+DEVI++KVGK K
Sbjct: 135 KGIDKEKVGQYAAEIRDKRRPEPYKGKGIKYSDEVIRRKVGKTGKK 180
>sp|P73306|RL6_SYNY3 50S ribosomal protein L6 OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=rplF PE=3 SV=1
Length = 179
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L+I GVGY RA+A+G L L +GY VE+T+P + V N V G+DK
Sbjct: 83 FERRLEIQGVGY--RAQAQGNKLTLNVGYSKPVEMTMPQGIEVKVENNTQVIVSGIDKEL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122
+ AA +R+ +PPEP+KGKGI Y E +++K GK K
Sbjct: 141 LGNTAAKIRAVRPPEPYKGKGIRYQGEYVRRKAGKTGKK 179
>sp|Q9HWF0|RL6_PSEAE 50S ribosomal protein L6 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rplF PE=3
SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGYKA +A+G++L L LG+ H V+ +P + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y DEV+++K KKK
Sbjct: 141 VGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177
>sp|Q02T65|RL6_PSEAB 50S ribosomal protein L6 OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGYKA +A+G++L L LG+ H V+ +P + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y DEV+++K KKK
Sbjct: 141 VGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177
>sp|B7V659|RL6_PSEA8 50S ribosomal protein L6 OS=Pseudomonas aeruginosa (strain LESB58)
GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGYKA +A+G++L L LG+ H V+ +P + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y DEV+++K KKK
Sbjct: 141 VGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177
>sp|A6UZK3|RL6_PSEA7 50S ribosomal protein L6 OS=Pseudomonas aeruginosa (strain PA7)
GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/97 (44%), Positives = 62/97 (63%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGYKA +A+G++L L LG+ H V+ +P + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGQVLSLSLGFSHPVDYELPAGIVAETPSQTDILIKGIDKQL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +R +PPEP+KGKG+ Y DEV+++K KKK
Sbjct: 141 VGQVAAEIRDFRPPEPYKGKGVRYADEVVRRKEAKKK 177
>sp|Q0VSI8|RL6_ALCBS 50S ribosomal protein L6 OS=Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573) GN=rplF PE=3 SV=1
Length = 177
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
Query: 17 LTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCC 76
+T + F R L+++GVGY RA+A+G++L L LG+ H V +P + V +
Sbjct: 76 VTGVADGFERKLQLLGVGY--RAQAQGKVLNLTLGFSHPVAYQLPEGITVETPSQTEIVI 133
Query: 77 CGLDKHRVHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
G+DK V Q AA+VR+ +PPEP+KGKG+ Y DE +++K KKK
Sbjct: 134 KGIDKQLVGQVAANVRAFRPPEPYKGKGVRYADEQVRRKEAKKK 177
>sp|Q1IFV1|RL6_PSEE4 50S ribosomal protein L6 OS=Pseudomonas entomophila (strain L48)
GN=rplF PE=3 SV=1
Length = 177
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F R L++VGVGYKA +A+G +L L LG+ H V+ +P + + G+DK
Sbjct: 83 FERKLQLVGVGYKA--QAKGTVLNLALGFSHPVDYELPAGITAETPSQTDILIKGIDKQL 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA VR +PPEP+KGKG+ Y DEV+++K KKK
Sbjct: 141 VGQVAAEVRGFRPPEPYKGKGVRYADEVVRRKEAKKK 177
>sp|Q89J99|RL6_BRAJA 50S ribosomal protein L6 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplF PE=3 SV=1
Length = 177
Score = 89.0 bits (219), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 24 FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
F + L+I GVGY RA +G+ L L LGY HDV T+P + + K + G D R
Sbjct: 83 FEKKLEITGVGY--RAAMQGKNLQLALGYSHDVIYTIPEGITITVPKPTEITVTGSDIQR 140
Query: 84 VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
V Q AA +RS +PPEP+KGKG+ Y E I +K GKKK
Sbjct: 141 VGQVAAEIRSYRPPEPYKGKGVKYVGEFIFRKEGKKK 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.143 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,238,457
Number of Sequences: 539616
Number of extensions: 1655132
Number of successful extensions: 4833
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 3343
Number of HSP's gapped (non-prelim): 770
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)