Query 033325
Match_columns 122
No_of_seqs 121 out of 841
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 20:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rl6_A Protein (ribosomal prot 100.0 5.4E-50 1.8E-54 305.1 8.9 107 12-120 70-176 (177)
2 1nkw_E 50S ribosomal protein L 100.0 3.4E-49 1.2E-53 308.1 12.7 109 12-122 98-206 (212)
3 3r8s_G 50S ribosomal protein L 100.0 4.4E-49 1.5E-53 299.7 8.1 107 12-120 70-176 (176)
4 3bbo_I Ribosomal protein L6; l 100.0 2.5E-49 8.5E-54 310.8 6.2 108 12-121 114-221 (223)
5 2zjr_E 50S ribosomal protein L 100.0 5E-50 1.7E-54 307.2 2.1 108 12-121 71-178 (185)
6 3v2d_H 50S ribosomal protein L 100.0 1.1E-48 3.6E-53 298.5 9.1 109 12-122 71-179 (180)
7 1vq8_E 50S ribosomal protein L 100.0 2.3E-37 8E-42 235.8 9.6 99 12-116 69-173 (178)
8 3j21_F 50S ribosomal protein L 100.0 4.2E-34 1.4E-38 218.7 8.3 104 12-119 74-181 (184)
9 2zkr_e 60S ribosomal protein L 100.0 9E-34 3.1E-38 218.0 8.9 101 12-115 76-184 (192)
10 3iz5_F 60S ribosomal protein L 100.0 2.2E-31 7.6E-36 204.5 9.4 102 12-116 75-184 (190)
11 4a17_E RPL9, 60S ribosomal pro 100.0 4.1E-31 1.4E-35 202.8 9.8 102 12-116 74-183 (188)
12 3u5e_H L8, RP24, YL11, 60S rib 100.0 7.9E-31 2.7E-35 201.6 10.3 102 12-116 74-185 (191)
13 2cql_A OK/SW-CL.103, 60S ribos 81.1 1.2 4.1E-05 30.2 3.0 23 57-80 16-38 (100)
14 1rl6_A Protein (ribosomal prot 64.1 5.4 0.00019 29.5 3.2 23 57-80 7-29 (177)
15 1vq8_E 50S ribosomal protein L 63.1 5.8 0.0002 29.5 3.2 23 57-80 5-27 (178)
16 3j21_F 50S ribosomal protein L 62.0 6.8 0.00023 29.2 3.4 23 57-80 10-32 (184)
17 3v2d_H 50S ribosomal protein L 61.7 5.8 0.0002 29.4 3.0 23 57-80 8-30 (180)
18 2zkr_e 60S ribosomal protein L 61.4 5.5 0.00019 29.9 2.8 23 57-80 9-31 (192)
19 3u5e_H L8, RP24, YL11, 60S rib 61.4 7 0.00024 29.3 3.4 24 56-80 8-31 (191)
20 3iz5_F 60S ribosomal protein L 61.1 7.2 0.00025 29.2 3.4 24 56-80 8-31 (190)
21 1nkw_E 50S ribosomal protein L 59.6 6.1 0.00021 30.3 2.8 23 57-80 35-57 (212)
22 4a17_E RPL9, 60S ribosomal pro 59.2 6.3 0.00022 29.5 2.8 24 56-80 8-31 (188)
23 3bbo_I Ribosomal protein L6; l 51.9 6 0.0002 30.5 1.7 23 57-80 50-72 (223)
24 3r8s_G 50S ribosomal protein L 48.7 5.7 0.00019 29.4 1.0 22 57-79 7-28 (176)
25 2zjr_E 50S ribosomal protein L 43.1 5.6 0.00019 29.7 0.3 23 57-80 8-30 (185)
26 1x4m_A FAR upstream element bi 41.3 37 0.0013 21.8 4.1 30 72-102 62-92 (94)
27 4fqn_A Malcavernin; helical do 36.7 11 0.00038 25.7 0.9 18 79-96 29-46 (98)
28 2opv_A KHSRP protein; KH domai 33.1 52 0.0018 20.5 3.7 30 63-93 44-81 (85)
29 1vig_A Vigilin; RNA-binding pr 29.3 76 0.0026 19.1 3.9 31 63-94 35-69 (71)
30 2hh2_A KH-type splicing regula 27.6 88 0.003 20.5 4.3 22 72-94 55-76 (107)
31 3lyw_A YBBR family protein; st 27.3 51 0.0017 21.7 3.0 25 53-77 58-82 (90)
32 2ctj_A Vigilin; K homology typ 25.4 58 0.002 21.2 3.0 31 63-94 48-82 (95)
33 2ctk_A Vigilin; K homology typ 22.6 82 0.0028 20.6 3.3 30 63-93 47-80 (104)
34 2l3u_A YBBR family protein; be 22.4 46 0.0016 21.5 2.0 29 52-81 60-88 (98)
35 2kps_A Uncharacterized protein 21.5 27 0.00093 22.9 0.7 28 52-79 60-87 (98)
36 3e9v_A Protein BTG2; B-cell tr 20.3 57 0.002 22.6 2.2 26 79-104 23-57 (120)
No 1
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=100.00 E-value=5.4e-50 Score=305.12 Aligned_cols=107 Identities=35% Similarity=0.628 Sum_probs=99.5
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV 91 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I 91 (122)
+++||+.||++||+++|+|+|+||||++ +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+|
T Consensus 70 li~Nmi~GVt~Gf~~~L~lvGvGyra~~--~G~~l~l~LG~Shpv~~~iP~gi~v~v~~~t~I~v~G~Dkq~Vgq~AA~I 147 (177)
T 1rl6_A 70 LLANMVEGVSKGYEKALELVGVGYRASK--QGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQRVGELAANI 147 (177)
T ss_dssp HHHHHHHHHHTCEEEEEEEESTTCEEEE--ETTEEEEESSSSSCEEECCCTTEEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred HHhCEEEeEcCCcEEEEEEEeeceEEEe--cCCEEEEEecCCccEEEeCCCCcEEEECCCCEEEEEeCCHHHHHHHHHHH
Confidence 6899999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCceeecCeEEEecCCccc
Q 033325 92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120 (122)
Q Consensus 92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~ 120 (122)
|+||+|||||||||+|.||+|++|+||++
T Consensus 148 r~~R~PepYKGKGI~y~~E~i~~K~gK~~ 176 (177)
T 1rl6_A 148 RAVRPPEPYKGKGIRYEGELVRLKEGKTG 176 (177)
T ss_dssp HTTSCCCTTTCCEEEETTCCCCC------
T ss_pred hccCCCCCcCCCcEeECCeEEEEcCccCC
Confidence 99999999999999999999999999985
No 2
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=100.00 E-value=3.4e-49 Score=308.10 Aligned_cols=109 Identities=28% Similarity=0.497 Sum_probs=105.9
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV 91 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I 91 (122)
+++||+.||++||+++|+|+|+||||++ +|+.|.|+||||||+.++||+||+|+++++|+|+|+|+|||.||||||+|
T Consensus 98 lI~NMI~GVt~Gf~kkLelvGvGYra~~--~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iiv~GiDKq~VGq~AA~I 175 (212)
T 1nkw_E 98 LVANAVKGVSDGYTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANV 175 (212)
T ss_pred HhhCEEEeeccCeEEEEEEeeeeeEEEc--CCCEEEEEccCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHH
Confidence 6899999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCceeecCeEEEecCCcccCC
Q 033325 92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122 (122)
Q Consensus 92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~~ 122 (122)
|+||+|||||||||+|.||+|++|+||++|+
T Consensus 176 R~~R~PEPYKGKGIry~~E~I~rK~gK~~k~ 206 (212)
T 1nkw_E 176 RKVRKPDAYHGKGVRFVGEQIALKAGKAGAT 206 (212)
T ss_pred hccCCCCCcCCCcEeECCeEEEEcCccccCC
Confidence 9999999999999999999999999998653
No 3
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=100.00 E-value=4.4e-49 Score=299.72 Aligned_cols=107 Identities=36% Similarity=0.658 Sum_probs=104.7
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV 91 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I 91 (122)
+++||+.||++||+++|+++|+||||++ +|+.|.++||||||+.++||+||+++++++|+|+|+|+|||.|+||||+|
T Consensus 70 li~NmI~GVt~Gf~~kL~lvgvgyra~~--~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~I 147 (176)
T 3r8s_G 70 LLNSMVIGVTEGFTKKLQLVGVGYRAAV--KGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADL 147 (176)
T ss_dssp HHHHTTTHHHHCEEECEEEESTTCEEEC--SSSEEEEECSSSSCEEEECCTTCEEEEEETTEEEEEESCHHHHHHHHHHH
T ss_pred HHHhHhhhcccCeEEEEEEeeeeeEEEe--CCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHh
Confidence 5899999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCceeecCeEEEecCCccc
Q 033325 92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120 (122)
Q Consensus 92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~ 120 (122)
|+||+|||||||||+|.||+|++|+||||
T Consensus 148 r~~R~PepYKGKGI~y~~E~i~~K~gKkk 176 (176)
T 3r8s_G 148 RAYRRPEPYKGKGVRYADEVVRTKEAKKK 176 (176)
T ss_dssp HHTTCCCSSSCCEEEESSCCCCCCCCCCC
T ss_pred hccCCCCCccCCceeECCeEEEeccccCC
Confidence 99999999999999999999999999985
No 4
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.5e-49 Score=310.80 Aligned_cols=108 Identities=38% Similarity=0.716 Sum_probs=105.2
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV 91 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I 91 (122)
+++||+.||++||+++|+|+|+||||++ +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.||||||+|
T Consensus 114 lI~NMI~GVt~Gf~kkLelvGvGYra~~--~G~~L~L~LG~SHpv~~~iP~GI~v~v~~~t~Iii~GiDKq~Vgq~AA~I 191 (223)
T 3bbo_I 114 LTDNMVVGVSKGFEKKLILVGVGYRATV--DGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATV 191 (223)
T ss_dssp TTTHHHHHTTTCEEECEECCSTTCCEEE--CSSEEEECSSCSSCEEEECCSSEEEECSSTTBCEEEESSSHHHHHHHHHT
T ss_pred HhhcEEEeeccCcEEEEEEeeeceEEEe--cCCEEEEEeeCCccEEEECCCCeEEEeCCCCEEEEEeCCHHHHHHHHHHH
Confidence 6899999999999999999999999997 89999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCceeecCeEEEecCCcccC
Q 033325 92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKS 121 (122)
Q Consensus 92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 121 (122)
|+||+|||||||||+|.||+|++|+||++|
T Consensus 192 R~~R~PEPYKGKGI~y~~E~I~rK~gK~~k 221 (223)
T 3bbo_I 192 RKWRPPEPYKGKGVKYSDEIVRRKEGKAGK 221 (223)
T ss_dssp TSSSCCCTTTCCSCEETTCCCCCCCCCCSC
T ss_pred hccCCCCCcCCCcEeECCeEEEEecccccc
Confidence 999999999999999999999999999843
No 5
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=100.00 E-value=5e-50 Score=307.22 Aligned_cols=108 Identities=29% Similarity=0.501 Sum_probs=103.5
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV 91 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I 91 (122)
+++||+.||++||+++|+|+|+||||++ +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.|+||||+|
T Consensus 71 lI~NmI~GVt~Gf~kkL~lvGvGYra~~--~G~~l~l~LG~Shpv~~~iP~gI~v~v~~~t~I~l~G~DKq~Vgq~AA~I 148 (185)
T 2zjr_E 71 LVANAVKGVSDGYTINLELRGVGFRAKL--TGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQLVGQVAANV 148 (185)
T ss_dssp HHHHHHHHHHHCEEEEEECBSTTCCCCC--BTTBCBCCSSCSSCCBCCCCTTEEEECSSTTEEEEEESSHHHHHHHHHHH
T ss_pred HhhcEEeeeccCcEEEEEEeeeccEEEE--cCCEEEEEeeCCccEEEECCCCeEEEECCCCEEEEEecCHHHHHHHHHHH
Confidence 6899999999999999999999999996 89999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCceeecCeEEEecCCcccC
Q 033325 92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKS 121 (122)
Q Consensus 92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~ 121 (122)
|+||+|||||||||+|.||+|++|+||++|
T Consensus 149 r~~R~PepYKGKGI~y~~E~i~~K~gK~~k 178 (185)
T 2zjr_E 149 RKVRKPDAYHGKGVRFVGEQIALKAGKAGA 178 (185)
T ss_dssp HHHTCCCTTTCCBCCCSSCCCCCCCCC---
T ss_pred hccCCCCCcCCCcEeECCeEEEEcCccccC
Confidence 999999999999999999999999999865
No 6
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=100.00 E-value=1.1e-48 Score=298.54 Aligned_cols=109 Identities=31% Similarity=0.515 Sum_probs=103.5
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEEeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHHHh
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAASV 91 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa~I 91 (122)
+++||+.||++||+++|+++|+||||++ +|+.|.|+||||||+.++||+||+++++++|+|+|+|+|||.|+||||+|
T Consensus 71 li~NmI~GVt~Gf~~kL~lvgvgyra~~--~g~~l~l~LG~sh~v~~~ip~gv~v~v~~~t~Iil~G~Dke~Vgq~AA~I 148 (180)
T 3v2d_H 71 LIANAVKGVSEGYSKELLIKGIGYRARL--VGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQKVGQVAANI 148 (180)
T ss_dssp HHHHHHHHHHTCEEEEEEEESTTCEEEE--ETTEEEEECSSSSCEEECCCTTCEEECSSTTEEEEEESCHHHHHHHHHHH
T ss_pred HHhhhEEeecCCcEEEEEEEEEeeEEEE--CCCEEEEEecCCeeEEEECCCCeEEEECCCCEEEEEECcHHHHHHHHHHh
Confidence 5899999999999999999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCCCCceeecCeEEEecCCcccCC
Q 033325 92 RSCKPPEPFKGKGIMYTDEVIKKKVGKKKSK 122 (122)
Q Consensus 92 r~~r~pepYKGKGI~~~~E~I~~K~gKk~~~ 122 (122)
|++|+|||||||||+|+||+|++|+||+++|
T Consensus 149 r~~r~PepYKGKGIry~~e~I~~K~gK~~~k 179 (180)
T 3v2d_H 149 RAIRKPSAYHEKGIYYAGEPVRLKPGKAGAK 179 (180)
T ss_dssp HHHTCCCSSSSCEEEETTCCCCCCCCC----
T ss_pred cccCCCCCcCCCcccCCCEEEEEeCccccCC
Confidence 9999999999999999999999999998643
No 7
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=100.00 E-value=2.3e-37 Score=235.83 Aligned_cols=99 Identities=15% Similarity=0.097 Sum_probs=95.3
Q ss_pred ehhhHhhccccceEEEEEEEEEEe--eEEEeccCCEEEE--EeccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHH
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGY--KARAEAEGRLLYL--KLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQF 87 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGY--r~~~~~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~Vgqf 87 (122)
+++||+.||++||+++|+++|+|| ||++ +|+.|.| +||||||+.++||+||++++++ |+|+|+|+|||.||||
T Consensus 69 li~Nmi~GVt~Gf~~~L~ivGvGypira~~--~g~~l~l~N~LG~shpv~~~ip~gi~v~v~~-~~I~v~G~Dkq~Vgq~ 145 (178)
T 1vq8_E 69 HIENMFHGVTEGWEYGMEVFYSHFPMQVNV--EGDEVVIENFLGEKAPRRTTIHGDTDVEIDG-EELTVSGPDIEAVGQT 145 (178)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSSCCEEEE--ETTEEEEESGGGCSSCEEEECCTTCEEEEET-TEEEEEESCHHHHHHH
T ss_pred HHcCEEEEEccCeEEEEEEEeeCCceEEEE--cCCEEEEEccccccccEEEeCCCCeEEEEeC-CEEEEEECCHHHHHHH
Confidence 689999999999999999999999 7877 8999999 9999999999999999999999 8999999999999999
Q ss_pred HHHhhccCCCCCCCCCce--eecCeEEEecC
Q 033325 88 AASVRSCKPPEPFKGKGI--MYTDEVIKKKV 116 (122)
Q Consensus 88 Aa~Ir~~r~pepYKGKGI--~~~~E~I~~K~ 116 (122)
||+||++|+| ||||| |+||++|..|.
T Consensus 146 AA~Ir~~r~p---KGKGIr~F~DGiyi~~k~ 173 (178)
T 1vq8_E 146 AADIEQLTRI---NDKDVRVFQDGVYITRKP 173 (178)
T ss_dssp HHHHHHTTCC---SSSCTTTCCCEEEEEECC
T ss_pred HHHHhccCCC---CCCceeEEECCEEEEecc
Confidence 9999999999 99999 89999999884
No 8
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=4.2e-34 Score=218.73 Aligned_cols=104 Identities=20% Similarity=0.206 Sum_probs=95.6
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEEeccCCEEEEE--eccceeeeeeCCCCcEEEecCCeEEEEEecCHHHHHHHHH
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARAEAEGRLLYLK--LGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHRVHQFAA 89 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~~~~g~~L~l~--LGySH~i~~~IP~~v~v~~~~~t~I~l~GidK~~VgqfAa 89 (122)
+++||+.||++||+++|+++|+|||+....+|+.|.|. ||||||+.++||+||+++++++ +|+|+|+|||.|+||||
T Consensus 74 li~NmI~GVt~Gf~~kL~lvgvgypira~~~g~~l~l~n~LG~sh~v~~~ip~gv~v~v~~~-~Iil~G~Dke~Vgq~AA 152 (184)
T 3j21_F 74 HIRNMIKGVTEGFTYKLKVVYSHFPISVKVQGDEVIIENFLGEKAPRKAKILPGVTVKVRGQ-EIIVEGIDKEAVGQTAA 152 (184)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTEEEEECGGGCSSCEEEECCTTEEEEEETT-EEEEEESCHHHHHHHHH
T ss_pred HHHhhheeeccCeEEEEEEEEecccceEEEcCCEEEEEecCCccccEEEECCCCeEEEecCC-EEEEEECCHHHHHHHHH
Confidence 58999999999999999999999944444489999885 9999999999999999999997 99999999999999999
Q ss_pred HhhccCCCCCCCCCceee--cCeEEEecCCcc
Q 033325 90 SVRSCKPPEPFKGKGIMY--TDEVIKKKVGKK 119 (122)
Q Consensus 90 ~Ir~~r~pepYKGKGI~~--~~E~I~~K~gKk 119 (122)
+||++++ ||||+||. ||.||..|.||.
T Consensus 153 ~Ir~~~~---vK~KDiR~F~DGiyv~ek~~~~ 181 (184)
T 3j21_F 153 NIEQATR---ITKWDRRIFQDGIYIVEKAGKP 181 (184)
T ss_dssp HHHHHHC---CCSSCSSSCCCEEEESCSSSCC
T ss_pred HHhhccc---cCCCcccEeeCCEEEEecCccc
Confidence 9999998 89999876 899999998874
No 9
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=9e-34 Score=218.01 Aligned_cols=101 Identities=16% Similarity=0.129 Sum_probs=94.3
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEE--EeccCCEEEE--EeccceeeeeeCCCCcEEEecCC--eEEEEEecCHHHHH
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKAR--AEAEGRLLYL--KLGYVHDVELTVPPAVRVFCLKN--NVVCCCGLDKHRVH 85 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~--~~~~g~~L~l--~LGySH~i~~~IP~~v~v~~~~~--t~I~l~GidK~~Vg 85 (122)
+++||+.||++||+++|+|+|+||||+ ++.+|+.|.| +||||||+.++||+||+++++++ |+|+|+|+|||.||
T Consensus 76 li~NmI~GVt~Gf~~~L~lvGvGyra~v~~e~~g~~l~l~N~LG~Sh~v~~~iP~gv~v~v~~~~~t~I~v~GiDKq~Vg 155 (192)
T 2zkr_e 76 HVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVS 155 (192)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSSCCEEEECTTCSEEEEESGGGCSSCEEEECCSSCEEEECSSCSSEEEEEESCHHHHH
T ss_pred HHhCEEEeeccCcEEEEEEEEecceeEEEEccCCCEEEEeCcCCCcccEEeeCCCCeEEEEcCCCCCEEEEEeCCHHHHH
Confidence 689999999999999999999999998 5558899999 89999999999999999999987 99999999999999
Q ss_pred HHHHHhhccCCCCCCCCCc--eeecCeEEEec
Q 033325 86 QFAASVRSCKPPEPFKGKG--IMYTDEVIKKK 115 (122)
Q Consensus 86 qfAa~Ir~~r~pepYKGKG--I~~~~E~I~~K 115 (122)
||||+||+++++ |+|+ .|.||.|+.-|
T Consensus 156 q~AA~IR~~~~v---k~kD~R~F~Dgiyv~~k 184 (192)
T 2zkr_e 156 NSAALIQQATTV---KNKDIRKFLDGIYVSEK 184 (192)
T ss_dssp HHHHHHHHHTCC---SSSCTTTCCCEEEEEEC
T ss_pred HHHHHHHhhCcC---CCCCccEeecCEEEEEe
Confidence 999999999999 7777 46789999877
No 10
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=99.97 E-value=2.2e-31 Score=204.48 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=93.0
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEEEEEecCHHHHH
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARA--EAEGRLLYLK--LGYVHDVELTVPPAVRVFCLKN--NVVCCCGLDKHRVH 85 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~--~~~g~~L~l~--LGySH~i~~~IP~~v~v~~~~~--t~I~l~GidK~~Vg 85 (122)
+++||+.||++||+++|+++|+||||++ ..+|+.|.|+ ||||||+.++||+||+++++++ |+|+|+|+|||.|+
T Consensus 75 li~NmI~GVt~Gf~~kL~lvgvgyr~~~~i~~~G~~l~l~N~LG~sh~v~~~ip~GV~v~v~~~~k~eIil~G~Dke~Vg 154 (190)
T 3iz5_F 75 HVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVTILRSEKVKDELVLDGNDIELVS 154 (190)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSSCCEEEEETTTTEEEEESGGGCSSCEEEECCSSCEEEECCTTTCEEEEEESCHHHHH
T ss_pred HHHhheeeeccCEEEEEEEEEEcccceeEEccCCCEEEEEecCCccccEEEECCCCeEEEEcCCCCCEEEEEECCHHHHH
Confidence 5899999999999999999999999765 5589999997 9999999999999999999998 79999999999999
Q ss_pred HHHHHhhccCCCCCCCCCce--eecCeEEEecC
Q 033325 86 QFAASVRSCKPPEPFKGKGI--MYTDEVIKKKV 116 (122)
Q Consensus 86 qfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~ 116 (122)
||||+||+.... |+|+| |.||.||..|.
T Consensus 155 q~AA~Irq~~~v---k~kD~R~F~DGiyv~ek~ 184 (190)
T 3iz5_F 155 RSAALINQKCHV---KNKDIRKFLDGIYVSDKG 184 (190)
T ss_dssp HHHHHHHHHTCC---CSSCTTTCCCEEEECCCC
T ss_pred HHHHHHHhhccc---cCCcccEeecCEEEEeee
Confidence 999999999874 77775 66899998764
No 11
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=99.97 E-value=4.1e-31 Score=202.75 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=93.1
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeEEE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEEEEEecCHHHHH
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKARA--EAEGRLLYLK--LGYVHDVELTVPPAVRVFCLKN--NVVCCCGLDKHRVH 85 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~~~--~~~g~~L~l~--LGySH~i~~~IP~~v~v~~~~~--t~I~l~GidK~~Vg 85 (122)
+++||+.||++||.++|+++|+||||++ +.+|+.|.|+ ||||||+.++||+||+++++++ |+|+|+|+|||.||
T Consensus 74 li~NmI~GVt~Gf~~kL~lvgvgyr~~~~v~~~G~~l~l~N~LG~sh~v~~~ip~gv~v~v~~~~k~eIil~G~Dke~Vg 153 (188)
T 4a17_E 74 QIKNMIRGVTEGYKFKMKLAFAHFPIQEAVAKDGSSIEIKHFLGEKRIRRIQALPGVKISRKDEEKNTLTLQGIDLNNVS 153 (188)
T ss_dssp HHHHHHHHHHSCEEEEEEEECSSSCCEEEECSSSCEEEEECGGGCCCEEEEECCTTCEEECCTTSSSEEEEEESCHHHHH
T ss_pred HHHhheEeeccCeEEEEEEEEEcccceEEEccCCCEEEEEeccCCcccEEEECCCCeEEEECCCCCCEEEEEEcCHHHHH
Confidence 5899999999999999999999999664 4578999995 9999999999999999999998 89999999999999
Q ss_pred HHHHHhhccCCCCCCCCCce--eecCeEEEecC
Q 033325 86 QFAASVRSCKPPEPFKGKGI--MYTDEVIKKKV 116 (122)
Q Consensus 86 qfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~ 116 (122)
||||+||+.... |+|+| |.||.||..|.
T Consensus 154 q~AA~Ir~~~~v---k~kD~R~F~DGiyv~ek~ 183 (188)
T 4a17_E 154 QTCALIHQSCLV---KEKDIRQFLDGIYVSDKR 183 (188)
T ss_dssp HHHHHHHHHTCC---CSSCHHHHCCEEEEEEEE
T ss_pred HHHHHHHhhccc---CCCcccEeecCeEEEEeE
Confidence 999999999865 88885 56899998774
No 12
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=99.97 E-value=7.9e-31 Score=201.55 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=92.1
Q ss_pred ehhhHhhccccceEEEEEEEEEEeeE--EE--eccCCEEEEE--eccceeeeeeCCCCcEEEecCC--eEEEEEecCHHH
Q 033325 12 CYKFTLTRMEAKFFRFLKIVGVGYKA--RA--EAEGRLLYLK--LGYVHDVELTVPPAVRVFCLKN--NVVCCCGLDKHR 83 (122)
Q Consensus 12 ~~kn~i~Gv~~gf~~~L~lvGvGYr~--~~--~~~g~~L~l~--LGySH~i~~~IP~~v~v~~~~~--t~I~l~GidK~~ 83 (122)
+++||+.||++||.++|+++|+|||+ .+ +.+|+.|.|+ ||||||+.++||+||+++++++ |+|+|+|+|||.
T Consensus 74 li~NmI~GVt~Gf~~kL~lvgvgyri~a~v~~~~~G~~l~l~n~LG~sh~v~~~ip~Gv~v~v~~~~kteIil~G~Dke~ 153 (191)
T 3u5e_H 74 LVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVED 153 (191)
T ss_dssp HHHHHHHHHHTCEEEEEEEECSSSCCEEEEECSSSCCEEEEECGGGCSSCEEEECCTTEEEEECTTSTTEEEEEESCHHH
T ss_pred HHHhheeeeccCEEEEEEEEEEeeeEEEEEEEcCCCCEEEEEeccCCcccEEEECCCCEEEEECCCCCCEEEEEECCHHH
Confidence 58999999999999999999999995 44 4488999995 9999999999999999999996 999999999999
Q ss_pred HHHHHHHhhccCCCCCCCCCce--eecCeEEEecC
Q 033325 84 VHQFAASVRSCKPPEPFKGKGI--MYTDEVIKKKV 116 (122)
Q Consensus 84 VgqfAa~Ir~~r~pepYKGKGI--~~~~E~I~~K~ 116 (122)
||||||+||+.... |+|+| |.||.||..|.
T Consensus 154 Vgq~AA~Irq~~~v---k~kD~R~FlDGiyv~ek~ 185 (191)
T 3u5e_H 154 VSQNAADLQQICRV---RNKDIRKFLDGIYVSHKG 185 (191)
T ss_dssp HHHHHHHHHHTTCC---CSSCTTTCCCEEEEEEEE
T ss_pred HHHHHHHHHhhccc---CCCcccEeecCeEEEEee
Confidence 99999999998765 77774 67999998774
No 13
>2cql_A OK/SW-CL.103, 60S ribosomal protein L9; N-terminal domain, alpha and beta (A+B), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.141.1.1
Probab=81.14 E-value=1.2 Score=30.19 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=19.6
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.+.||+||+|++.+ +.|+++|.-
T Consensus 16 pI~IP~gV~V~i~~-~~VtVKGPk 38 (100)
T 2cql_A 16 TVDIPENVDITLKG-RTVIVKGPR 38 (100)
T ss_dssp EECCCSSCEEEEET-TEEEEEETT
T ss_pred cEEcCCCCEEEEeC-CEEEEECCC
Confidence 46899999999987 589999975
No 14
>1rl6_A Protein (ribosomal protein L6); RNA-binding protein, gentamicin resistance, alpha/beta protein; 2.00A {Geobacillus stearothermophilus} SCOP: d.141.1.1 d.141.1.1 PDB: 1giy_H 1ml5_h* 1c04_B 1yl3_H 2b66_H 2b9n_H 2b9p_H 1eg0_J 487d_J
Probab=64.14 E-value=5.4 Score=29.51 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=17.9
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.+.||+||+|++.+ +.|+++|.-
T Consensus 7 pI~IP~gV~V~i~~-~~VtVkGpk 29 (177)
T 1rl6_A 7 PIEIPAGVTVTVNG-NTVTVKGPK 29 (177)
T ss_dssp CEECCTTCEEEEET-TEEEEEETT
T ss_pred ceEcCCCCEEEEeC-CEEEEECCC
Confidence 46789999998876 478888864
No 15
>1vq8_E 50S ribosomal protein L6P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.141.1.1 d.141.1.1 PDB: 1vq4_E* 1vq5_E* 1vq6_E* 1vq7_E* 1s72_E* 1vq9_E* 1vqk_E* 1vql_E* 1vqm_E* 1vqn_E* 1vqo_E* 1vqp_E* 1yhq_E* 1yi2_E* 1yij_E* 1yit_E* 1yj9_E* 1yjn_E* 1yjw_E* 2otj_E* ...
Probab=63.09 E-value=5.8 Score=29.47 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=18.9
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.++||+||+|++.+ +.++++|.-
T Consensus 5 pI~IP~gV~v~i~~-~~vtVkGpk 27 (178)
T 1vq8_E 5 ELEIPEDVDAEQDH-LDITVEGDN 27 (178)
T ss_dssp EEECCTTCEEEEET-TEEEEEETT
T ss_pred cEEcCCCCEEEEeC-CEEEEECCC
Confidence 56899999999877 488898865
No 16
>3j21_F 50S ribosomal protein L6P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.01 E-value=6.8 Score=29.20 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=18.5
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.+.||+||+|++.+ +.++++|.-
T Consensus 10 ~I~IP~gV~v~i~~-~~V~VkGpk 32 (184)
T 3j21_F 10 EVEIPEGVEVTVEG-YKVKVKGPK 32 (184)
T ss_dssp EEECCSSCEEEESS-SEEEEECSS
T ss_pred EEeCCCCcEEEEeC-CEEEEEcCC
Confidence 46799999999876 578888864
No 17
>3v2d_H 50S ribosomal protein L6; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_F 2hgj_H 2hgq_H 2hgu_H 1vsa_F 2j03_H 2jl6_H 2jl8_H 2v47_H 2v49_H 2wdi_H 2wdj_H 2wdl_H 2wdn_H 2wh2_H 2wh4_H 2wrj_H 2wrl_H 2wro_H 2wrr_H ...
Probab=61.67 E-value=5.8 Score=29.40 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=17.3
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.+.||+||+|++.+ +.++++|.-
T Consensus 8 pI~IP~gV~v~i~~-~~v~VkGpk 30 (180)
T 3v2d_H 8 PIPVPKGVSVEVAP-GRVKVKGPK 30 (180)
T ss_dssp CEECCTTCEEEEET-TEEEEECSS
T ss_pred eeeCCCCcEEEEeC-CEEEEEeCC
Confidence 36789999998876 477787764
No 18
>2zkr_e 60S ribosomal protein L9; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=61.41 E-value=5.5 Score=29.86 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=18.0
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.+.||+||+|++.+ +.++++|.-
T Consensus 9 pI~IP~gV~V~i~~-~~VtVkGpk 31 (192)
T 2zkr_e 9 TVDIPENVDITLKG-RTVIVKGPR 31 (192)
T ss_dssp -CCCCTTCEEEEET-TEEEEEETT
T ss_pred cEEcCCCCEEEEeC-CEEEEECCC
Confidence 46889999999876 478888864
No 19
>3u5e_H L8, RP24, YL11, 60S ribosomal protein L9-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_F 1s1i_H 3izs_F* 3j16_F 3o5h_I 3o58_I 3u5i_H 4b6a_H 3jyw_H
Probab=61.38 E-value=7 Score=29.27 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=19.0
Q ss_pred eeeeCCCCcEEEecCCeEEEEEecC
Q 033325 56 VELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 56 i~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
..+.||+||+|++.+ ..++++|.-
T Consensus 8 ~~I~IP~gV~v~i~~-~~V~VkGPk 31 (191)
T 3u5e_H 8 QQIEVPEGVTVSIKS-RIVKVVGPR 31 (191)
T ss_dssp EEEECCTTCEEEEET-TEEEEEETT
T ss_pred ccEECCCCcEEEEeC-CEEEEEcCC
Confidence 356899999999876 478888864
No 20
>3iz5_F 60S ribosomal protein L9 (L6P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_F
Probab=61.08 E-value=7.2 Score=29.20 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=18.8
Q ss_pred eeeeCCCCcEEEecCCeEEEEEecC
Q 033325 56 VELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 56 i~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
..+.||+||+|++.+ +.++++|.-
T Consensus 8 ~~I~IP~gV~v~i~~-~~V~VkGPk 31 (190)
T 3iz5_F 8 ETMEIPEGVTVQVAA-KVVTVEGPR 31 (190)
T ss_dssp EEEECCTTCEEEEET-TEEEEEETT
T ss_pred ccEECCCCCEEEEeC-CEEEEECCC
Confidence 356899999999876 478888864
No 21
>1nkw_E 50S ribosomal protein L6; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1sm1_E*
Probab=59.60 E-value=6.1 Score=30.26 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.5
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.+.||+||+|++.+ +.|+++|.-
T Consensus 35 pI~IP~gV~V~i~~-~~VtVKGPk 57 (212)
T 1nkw_E 35 PIAVPSGVTVNAQD-GVFKVKGPK 57 (212)
T ss_pred ceecCCCcEEEEeC-CEEEEECCC
Confidence 56889999999876 478888765
No 22
>4a17_E RPL9, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_E 4a1c_E 4a1e_E
Probab=59.19 E-value=6.3 Score=29.45 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=19.2
Q ss_pred eeeeCCCCcEEEecCCeEEEEEecC
Q 033325 56 VELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 56 i~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
..+.||+||+|++.+ +.++++|.-
T Consensus 8 ~~I~IP~gV~v~i~~-~~V~VkGPk 31 (188)
T 4a17_E 8 VNVPIPDKVTITAKQ-RVVEVKGPL 31 (188)
T ss_dssp EECCCCTTCEEEEET-TEEEEEETT
T ss_pred ccEECCCCcEEEEeC-CEEEEEcCC
Confidence 356899999999877 478888864
No 23
>3bbo_I Ribosomal protein L6; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=51.88 E-value=6 Score=30.49 Aligned_cols=23 Identities=17% Similarity=0.102 Sum_probs=19.3
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.+.||+||+|++.+ +.|+++|.-
T Consensus 50 pI~IP~gV~V~i~~-~~VtVKGPk 72 (223)
T 3bbo_I 50 PIAVPSNVTIALEG-QDLKVKGPL 72 (223)
T ss_dssp CCCCSTTSCEEESS-SEEEECCSS
T ss_pred ceecCCCCEEEEeC-CEEEEECCC
Confidence 47899999999977 588899875
No 24
>3r8s_G 50S ribosomal protein L6; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_E 1p86_E 2awb_G 2aw4_G 2i2v_G 2j28_G 2i2t_G* 2qao_G* 2qba_G* 2qbc_G* 2qbe_G 2qbg_G 2qbi_G* 2qbk_G* 2qov_G 2qox_G 2qoz_G* 2qp1_G* 2rdo_G 2vhm_G ...
Probab=48.71 E-value=5.7 Score=29.36 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=14.7
Q ss_pred eeeCCCCcEEEecCCeEEEEEec
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGL 79 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gi 79 (122)
.+.||+||+|++.+ +.++++|.
T Consensus 7 pI~IP~gV~v~i~~-~~V~VkGp 28 (176)
T 3r8s_G 7 PVVVPAGVDVKING-QVITIKGK 28 (176)
T ss_dssp CEECCTTCCCEESS-SEEECCBT
T ss_pred ceeCCCCcEEEEeC-CEEEEEcC
Confidence 35678888887765 35666664
No 25
>2zjr_E 50S ribosomal protein L6; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.141.1.1 d.141.1.1 PDB: 1nwx_E* 1xbp_E* 2zjp_E* 2zjq_E 1nwy_E 3cf5_E* 3dll_E* 3pio_E* 3pip_E* 1pnu_E 1pny_E 1vor_H 1vou_H 1vow_H 1voy_H 1vp0_H
Probab=43.13 E-value=5.6 Score=29.70 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=18.7
Q ss_pred eeeCCCCcEEEecCCeEEEEEecC
Q 033325 57 ELTVPPAVRVFCLKNNVVCCCGLD 80 (122)
Q Consensus 57 ~~~IP~~v~v~~~~~t~I~l~Gid 80 (122)
.+.||+||+|++.+ +.|+++|.-
T Consensus 8 pI~IP~gV~V~i~~-~~VtVkGpk 30 (185)
T 2zjr_E 8 PIAVPSGVTVNAQD-GVFKVKGPK 30 (185)
T ss_dssp CBCCCTTCCEECCT-TCCEECCSS
T ss_pred ceecCCCCEEEEeC-CEEEEECCC
Confidence 46899999999876 478888865
No 26
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=41.31 E-value=37 Score=21.76 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=21.9
Q ss_pred eEEEEEecCHHHHHHHHHHhhcc-CCCCCCCC
Q 033325 72 NVVCCCGLDKHRVHQFAASVRSC-KPPEPFKG 102 (122)
Q Consensus 72 t~I~l~GidK~~VgqfAa~Ir~~-r~pepYKG 102 (122)
..++|+| +.+.+..-...|+.+ +.++.|-.
T Consensus 62 r~v~I~G-~~~~v~~A~~~I~~~i~~~~~~~~ 92 (94)
T 1x4m_A 62 KPLRITG-DPYKVQQAKEMVLELIRDQGSGPS 92 (94)
T ss_dssp EEEEEEE-CTTTHHHHHHHHHHHHCCCSSCSS
T ss_pred eEEEEEe-CHHHHHHHHHHHHHHHhccCCCCC
Confidence 3599999 888888777777764 66666654
No 27
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=36.72 E-value=11 Score=25.73 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.8
Q ss_pred cCHHHHHHHHHHhhccCC
Q 033325 79 LDKHRVHQFAASVRSCKP 96 (122)
Q Consensus 79 idK~~VgqfAa~Ir~~r~ 96 (122)
-+.+++.|||+-||+||.
T Consensus 29 L~~~ElqqFA~Llr~YR~ 46 (98)
T 4fqn_A 29 LSSQEIQQFAALLHEYRN 46 (98)
T ss_dssp SCHHHHHHHHHHHHHHHT
T ss_pred cChHHHHHHHHHHHHHHc
Confidence 357899999999999986
No 28
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=33.07 E-value=52 Score=20.52 Aligned_cols=30 Identities=20% Similarity=0.318 Sum_probs=20.9
Q ss_pred CcEEEecCCeE--------EEEEecCHHHHHHHHHHhhc
Q 033325 63 AVRVFCLKNNV--------VCCCGLDKHRVHQFAASVRS 93 (122)
Q Consensus 63 ~v~v~~~~~t~--------I~l~GidK~~VgqfAa~Ir~ 93 (122)
|+++.+.+... +.|+| |.+.+..-...|+.
T Consensus 44 ga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~ 81 (85)
T 2opv_A 44 GVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMD 81 (85)
T ss_dssp TCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHH
Confidence 45555554333 99999 99988877776654
No 29
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=29.33 E-value=76 Score=19.13 Aligned_cols=31 Identities=16% Similarity=0.059 Sum_probs=20.2
Q ss_pred CcEEEecCCe----EEEEEecCHHHHHHHHHHhhcc
Q 033325 63 AVRVFCLKNN----VVCCCGLDKHRVHQFAASVRSC 94 (122)
Q Consensus 63 ~v~v~~~~~t----~I~l~GidK~~VgqfAa~Ir~~ 94 (122)
++++.++++. .++|+|.. +.+.+-.+.|+.+
T Consensus 35 g~~I~i~~~g~~~~~V~I~G~~-~~v~~A~~~I~~i 69 (71)
T 1vig_A 35 KVSVRIPPDSEKSNLIRIEGDP-QGVQQAKRELLEL 69 (71)
T ss_dssp CCEEECCCCCSSSEEEEEEESS-HHHHHHHHHHHHT
T ss_pred CCEEEECCCCCcccEEEEEcCH-HHHHHHHHHHHHH
Confidence 4455555444 99999984 7777666666543
No 30
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=27.63 E-value=88 Score=20.46 Aligned_cols=22 Identities=5% Similarity=0.125 Sum_probs=18.3
Q ss_pred eEEEEEecCHHHHHHHHHHhhcc
Q 033325 72 NVVCCCGLDKHRVHQFAASVRSC 94 (122)
Q Consensus 72 t~I~l~GidK~~VgqfAa~Ir~~ 94 (122)
..|+|+| +.+.|..-...|+.+
T Consensus 55 r~V~I~G-~~e~v~~A~~~I~~~ 76 (107)
T 2hh2_A 55 KLFIIRG-SPQQIDHAKQLIEEK 76 (107)
T ss_dssp EEEEEES-CHHHHHHHHHHHHHH
T ss_pred eEEEEEC-CHHHHHHHHHHHHHH
Confidence 5799999 999998888888775
No 31
>3lyw_A YBBR family protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.90A {Desulfitobacterium hafniense} PDB: 2kpu_A 2l5n_A
Probab=27.34 E-value=51 Score=21.68 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=20.2
Q ss_pred ceeeeeeCCCCcEEEecCCeEEEEE
Q 033325 53 VHDVELTVPPAVRVFCLKNNVVCCC 77 (122)
Q Consensus 53 SH~i~~~IP~~v~v~~~~~t~I~l~ 77 (122)
+-|+.+.+|+|+++.--+|..|.+.
T Consensus 58 ~~~V~v~~P~G~~lv~vsP~~V~~~ 82 (90)
T 3lyw_A 58 DYEVKVEPIPNIKIVEISPRVVTLQ 82 (90)
T ss_dssp EEECEECCCTTEEEEEEESSEEEEE
T ss_pred eEEEEEECCCCCEEEEEccceEEEE
Confidence 4568899999999888888877764
No 32
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=25.42 E-value=58 Score=21.18 Aligned_cols=31 Identities=13% Similarity=0.099 Sum_probs=21.5
Q ss_pred CcEEEecCCe----EEEEEecCHHHHHHHHHHhhcc
Q 033325 63 AVRVFCLKNN----VVCCCGLDKHRVHQFAASVRSC 94 (122)
Q Consensus 63 ~v~v~~~~~t----~I~l~GidK~~VgqfAa~Ir~~ 94 (122)
++++.++++. .++|.|.+. .|.+--+.|+.+
T Consensus 48 gv~I~i~~~g~~~~~V~I~G~~~-~v~~A~~~I~~i 82 (95)
T 2ctj_A 48 GVHIHFPVEGSGSDTVVIRGPSS-DVEKAKKQLLHL 82 (95)
T ss_dssp SCEEECCCTTTTCCEEEEESCHH-HHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCcceEEEEcCHH-HHHHHHHHHHHH
Confidence 4555555544 999999887 777766666654
No 33
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.56 E-value=82 Score=20.63 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=19.9
Q ss_pred CcEEEecCCe----EEEEEecCHHHHHHHHHHhhc
Q 033325 63 AVRVFCLKNN----VVCCCGLDKHRVHQFAASVRS 93 (122)
Q Consensus 63 ~v~v~~~~~t----~I~l~GidK~~VgqfAa~Ir~ 93 (122)
|+++.++++. .|+|+|.+ +.+.+--+.|+.
T Consensus 47 g~~I~I~~~g~~~~~V~I~G~~-e~v~~A~~~I~~ 80 (104)
T 2ctk_A 47 EVNIHVPAPELQSDIIAITGLA-ANLDRAKAGLLE 80 (104)
T ss_dssp CCEEECCCTTTTCCEEEEEECH-HHHHHHHHHHHH
T ss_pred CCEEEecCCCCCcceEEEEcCH-HHHHHHHHHHHH
Confidence 5566666553 99999987 777665555543
No 34
>2l3u_A YBBR family protein; beta strand, figure eight, figure 8, structural genomics, PS biology, protein structure initiative; NMR {Desulfitobacterium hafniense}
Probab=22.44 E-value=46 Score=21.47 Aligned_cols=29 Identities=3% Similarity=0.098 Sum_probs=22.3
Q ss_pred cceeeeeeCCCCcEEEecCCeEEEEEecCH
Q 033325 52 YVHDVELTVPPAVRVFCLKNNVVCCCGLDK 81 (122)
Q Consensus 52 ySH~i~~~IP~~v~v~~~~~t~I~l~GidK 81 (122)
|+-|+.+.+|+|+.+.--+|..+.+. +|+
T Consensus 60 ~~v~v~v~~P~~~~~v~i~P~~V~V~-i~e 88 (98)
T 2l3u_A 60 HTVKIYWQLPAGIEMVSIPDVTYTLK-AKE 88 (98)
T ss_dssp CEECCCCBCSSSCEEEECCCEECCEE-ECC
T ss_pred EEEeEEEECCCCcEEEEeCCCEEEEE-Eec
Confidence 45677889999999877778888776 443
No 35
>2kps_A Uncharacterized protein; beta strand, figure eight, figure 8, structural genomics, PSI-2, protein structure initiative; NMR {Desulfitobacterium hafniense Y51} PDB: 2l3u_A
Probab=21.50 E-value=27 Score=22.87 Aligned_cols=28 Identities=4% Similarity=0.076 Sum_probs=20.6
Q ss_pred cceeeeeeCCCCcEEEecCCeEEEEEec
Q 033325 52 YVHDVELTVPPAVRVFCLKNNVVCCCGL 79 (122)
Q Consensus 52 ySH~i~~~IP~~v~v~~~~~t~I~l~Gi 79 (122)
|+-|+.+.+|+|+++.-..+-.++|+-.
T Consensus 60 ~~vpv~v~lP~gv~vv~~~~v~vtl~~~ 87 (98)
T 2kps_A 60 HTVKIYWQLPAGIEMVSIPDVTYTLKAK 87 (98)
T ss_dssp EEEECCCBCSSCCCCCCCCEEEECEEEC
T ss_pred EEEeEEEECCCCEEEEecCcEEEEEEEC
Confidence 3667888999999877666667777643
No 36
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=20.34 E-value=57 Score=22.59 Aligned_cols=26 Identities=27% Similarity=0.626 Sum_probs=23.0
Q ss_pred cCHHHHHHHHHHhhc---------cCCCCCCCCCc
Q 033325 79 LDKHRVHQFAASVRS---------CKPPEPFKGKG 104 (122)
Q Consensus 79 idK~~VgqfAa~Ir~---------~r~pepYKGKG 104 (122)
.+++.+..||+.+.+ |-|.+|.||-|
T Consensus 23 l~~~~v~~F~~~L~~~L~~~y~~HW~P~~P~kGsa 57 (120)
T 3e9v_A 23 VSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSG 57 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTSCCTTSTTTTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 678899999999875 68999999998
Done!