RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 033325
         (122 letters)



>d2qamg2 d.141.1.1 (G:82-176) Ribosomal protein L6 {Escherichia coli
           [TaxId: 562]}
          Length = 95

 Score =  105 bits (265), Expect = 9e-32
 Identities = 39/97 (40%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           F + L++VGVGY  RA  +G ++ L LG+ H V+  +P  +   C     +   G DK  
Sbjct: 1   FTKKLQLVGVGY--RAAVKGNVINLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQV 58

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKKVGKKK 120
           + Q AA +R+ + PEP+KGKG+ Y DEV++ K  KKK
Sbjct: 59  IGQVAADLRAYRRPEPYKGKGVRYADEVVRTKEAKKK 95


>d2j01h2 d.141.1.1 (H:83-171) Ribosomal protein L6 {Thermus
           thermophilus [TaxId: 274]}
          Length = 89

 Score = 97.8 bits (244), Expect = 1e-28
 Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L I G+GY  RA   GR L L +G+ H V +  P  +     +   V   G+DK +
Sbjct: 1   YSKELLIKGIGY--RARLVGRALELTVGFSHPVVVEPPEGITFEVPEPTRVRVSGIDKQK 58

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIK 113
           V Q AA++R+ + P  +  KGI Y  E ++
Sbjct: 59  VGQVAANIRAIRKPSAYHEKGIYYAGEPVR 88


>d1rl6a2 d.141.1.1 (A:82-170) Ribosomal protein L6 {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 89

 Score = 97.4 bits (243), Expect = 1e-28
 Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 2/90 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           + + L++VGVGY  RA  +G+ L L +GY H VE+     + +       +   G DK R
Sbjct: 1   YEKALELVGVGY--RASKQGKKLVLSVGYSHPVEIEPEEGLEIEVPSQTKIIVKGADKQR 58

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIK 113
           V + AA++R+ +PPEP+KGKGI Y  E+++
Sbjct: 59  VGELAANIRAVRPPEPYKGKGIRYEGELVR 88


>d2zjre1 d.141.1.1 (E:83-172) Ribosomal protein L6 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 90

 Score = 89.8 bits (223), Expect = 2e-25
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 24  FFRFLKIVGVGYKARAEAEGRLLYLKLGYVHDVELTVPPAVRVFCLKNNVVCCCGLDKHR 83
           +   L++ GVG+  RA+  G+ L + +GY H V +  P  V     +   +   G+DK  
Sbjct: 1   YTINLELRGVGF--RAKLTGKALEMNIGYSHPVIIEPPAGVTFAVPEPTRIDVSGIDKQL 58

Query: 84  VHQFAASVRSCKPPEPFKGKGIMYTDEVIKKK 115
           V Q AA+VR  + P+ + GKG+ +  E I  K
Sbjct: 59  VGQVAANVRKVRKPDAYHGKGVRFVGEQIALK 90


>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP),
          C-terminal domain {Archaeon Pyrococcus woesei [TaxId:
          2262]}
          Length = 92

 Score = 23.9 bits (52), Expect = 4.0
 Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 4  PCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAE 42
          P  F G +       ++    F   K+V  G K+  + E
Sbjct: 40 PEEFPG-IICHLDDPKVALLIFSSGKLVVTGAKSVQDIE 77


>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP),
          C-terminal domain {Archaeon Sulfolobus acidocaldarius
          [TaxId: 2285]}
          Length = 101

 Score = 23.9 bits (52), Expect = 4.4
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 1/39 (2%)

Query: 4  PCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAE 42
          P  F G L Y+    R+    F   K+V  G K   E  
Sbjct: 39 PEQFPG-LIYRMDEPRVVLLIFSSGKMVITGAKREDEVH 76


>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP),
          C-terminal domain {Archaeon Sulfolobus acidocaldarius
          [TaxId: 2285]}
          Length = 92

 Score = 23.5 bits (51), Expect = 4.9
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 4  PCLFSGNLCYKFTLTRMEAKFFRFLKIVGVGYKARAEAE 42
          P  F G L ++    ++ +  F+  K+V  G K+  E  
Sbjct: 40 PDQFPG-LIFRLESPKITSLIFKSGKMVVTGAKSTDELI 77


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.143    0.451 

Gapped
Lambda     K      H
   0.267   0.0648    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 472,836
Number of extensions: 20504
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 14
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.1 bits)