BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033331
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P93092|ACP1_CASGL Acyl carrier protein 1, chloroplastic OS=Casuarina glauca GN=ACP1
PE=2 SV=1
Length = 136
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 57/95 (60%), Gaps = 10/95 (10%)
Query: 3 TFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLK--TNRFCVSCSAKP 60
T ++I+ F SL PS R SNL+ + F L+ + RF V C+AKP
Sbjct: 5 TGTSISMASFKASLAPS--------RVSNLRSVSLPIKGKSFAPLRMRSARFVVCCAAKP 56
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
ETV+KVC IV++QLALP ++ +T ESKF+ LG +S
Sbjct: 57 ETVEKVCAIVKKQLALPDDSAVTGESKFATLGADS 91
>sp|P52413|ACP3_CUPLA Acyl carrier protein 3, chloroplastic OS=Cuphea lanceolata
GN=ACL1.3 PE=2 SV=1
Length = 143
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 4/99 (4%)
Query: 1 MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNR----FCVSC 56
MAT +A +S+I S SL+ + S+L+ FPSL+++R F V C
Sbjct: 1 MATAAAGSSLICIKSASCSLNRAQVPSGLSSLRSVSLPISGKIFPSLRSSRGPLSFRVCC 60
Query: 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
AK ETV +VCEIV++QLALP ++E+ SKFSALG +S
Sbjct: 61 QAKQETVTRVCEIVKKQLALPEDSEVNGLSKFSALGADS 99
>sp|P52411|ACP1_CUPLA Acyl carrier protein 1, chloroplastic OS=Cuphea lanceolata
GN=ACL1.1 PE=2 SV=1
Length = 140
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 4/72 (5%)
Query: 28 RTSNLKMAIGGWRKNRFPSLKTNR----FCVSCSAKPETVQKVCEIVRRQLALPAETELT 83
R S+L+ + FPSLK+++ VSC AKPETV KVC IV++QLALP ++E+
Sbjct: 24 RISSLRSVSLPVSRKSFPSLKSSKSSFALRVSCQAKPETVAKVCGIVKKQLALPDDSEVN 83
Query: 84 SESKFSALGGNS 95
SKFSALG +S
Sbjct: 84 GLSKFSALGADS 95
>sp|P52414|ACP4_CUPLA Acyl carrier protein 4, chloroplastic OS=Cuphea lanceolata
GN=ACL1 PE=3 SV=1
Length = 139
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 3/71 (4%)
Query: 28 RTSNLKMAIGGWRKNRFPSLKTNR--FC-VSCSAKPETVQKVCEIVRRQLALPAETELTS 84
R S+L+ + FPSL++++ F VSC AKPETV KVC IV++QLALP ++E+
Sbjct: 24 RISSLRSVSLPVSRKSFPSLRSSKGSFARVSCQAKPETVAKVCRIVKKQLALPDDSEVNG 83
Query: 85 ESKFSALGGNS 95
SKFSALG +S
Sbjct: 84 LSKFSALGADS 94
>sp|Q9SW21|ACP4_ARATH Acyl carrier protein 4, chloroplastic OS=Arabidopsis thaliana
GN=ACP4 PE=1 SV=1
Length = 137
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 43 RFPS-LKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
RF S K+ R +SC+AK ETVQKV +IV+ QLAL A+ LT+ESKFSALG +S
Sbjct: 35 RFTSSTKSLRLQISCAAKAETVQKVSDIVKEQLALAADVPLTAESKFSALGADS 88
>sp|P15543|ACP3_HORVU Acyl carrier protein 3, chloroplastic OS=Hordeum vulgare
GN=ACL1.3 PE=1 SV=2
Length = 132
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 37 GGWRKNRFPSLKT--NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGN 94
G R N F L+ RF V CSAK +TV+KVCEIV++QLA+P TE+ +KFS LG +
Sbjct: 27 GARRGNAFLRLQPVPMRFAVCCSAKQDTVEKVCEIVKKQLAVPEGTEVCGTTKFSDLGAD 86
Query: 95 S 95
S
Sbjct: 87 S 87
>sp|P25701|ACP2_ARATH Acyl carrier protein 2, chloroplastic OS=Arabidopsis thaliana
GN=ACP2 PE=1 SV=2
Length = 136
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 50 NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
R VSC+AKPETV KVC +VR+QL+L E+T+ +KF+ALG +S
Sbjct: 46 TRLTVSCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADS 91
>sp|P52412|ACP2_CUPLA Acyl carrier protein 2, chloroplastic OS=Cuphea lanceolata
GN=ACL1.2 PE=2 SV=1
Length = 137
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 40/56 (71%)
Query: 40 RKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
RK+ F + V+C AKPETV KVC IV++QLALP +++++ SKFSALG +S
Sbjct: 37 RKSFFSRRGSFSLRVNCQAKPETVTKVCNIVKKQLALPDDSDVSGVSKFSALGADS 92
>sp|P25702|ACP3_ARATH Acyl carrier protein 3, chloroplastic OS=Arabidopsis thaliana
GN=ACP3 PE=1 SV=2
Length = 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 50 NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
R V C+AKPETV KVC +VR+QL+L E+T+ +KF+ALG +S
Sbjct: 46 TRLTVYCAAKPETVDKVCAVVRKQLSLKEADEITAATKFAALGADS 91
>sp|P07088|ACP_BRACM Acyl carrier protein SF2, chloroplastic OS=Brassica campestris
GN=Acl1.1 PE=2 SV=1
Length = 134
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 37/46 (80%)
Query: 50 NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
RF +SC+AKPETV+KV +IV++QL+L + ++ +E+KF+ LG +S
Sbjct: 45 TRFSISCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADS 90
>sp|P07854|ACP1_SPIOL Acyl carrier protein 1, chloroplastic OS=Spinacia oleracea
GN=ACL1.1 PE=1 SV=2
Length = 138
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 15/102 (14%)
Query: 1 MATFSAITSVIFAPSL----KPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNR---FC 53
MA+ SA T+V PS K S N R S++ W K+ FP+L+T+R F
Sbjct: 1 MASLSATTTVRVQPSSSSLHKLSQGNG----RCSSI--VCLDWGKSSFPTLRTSRRRSFI 54
Query: 54 VSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
+AK ET+ KVC+IV+ +LAL A+ +T++S+FS LG +S
Sbjct: 55 --SAAKKETIDKVCDIVKEKLALGADVVVTADSEFSKLGADS 94
>sp|P08817|ACP2_HORVU Acyl carrier protein 2, chloroplastic OS=Hordeum vulgare
GN=ACL1.2 PE=1 SV=2
Length = 129
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 50 NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
RF V C+AK ETV+KVC+IV+ QLAL +TE++ S F+ LG +S
Sbjct: 42 QRFSVCCAAKKETVEKVCDIVKSQLALSDDTEVSGSSTFADLGADS 87
>sp|P17650|ACP2_BRANA Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A2
PE=2 SV=1
Length = 134
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 36/46 (78%)
Query: 50 NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
R VSC+AKPETV+KV +IV++QL+L + ++ +E+KF+ LG +S
Sbjct: 45 TRLSVSCAAKPETVEKVSKIVKKQLSLKDDQKVVAETKFADLGADS 90
>sp|P32887|ACP3_BRANA Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A3
PE=2 SV=1
Length = 134
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 50 NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
R VSC+AKPET++KV +IV++QL+L + ++ +E+KF+ LG +S
Sbjct: 45 TRLSVSCAAKPETIEKVSKIVKKQLSLKDDQKVVAETKFADLGADS 90
>sp|P08971|ACP5_BRANA Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.C1
PE=2 SV=1
Length = 134
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 40 RKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
R N +L R +SC+AK ETV+KV EIV++QL+L + ++ +E+KF LG +S
Sbjct: 35 RTNLSFNLSRTRLSISCAAKQETVEKVSEIVKKQLSLKDDQQVVAETKFVDLGADS 90
>sp|P10352|ACP1_BRANA Acyl carrier protein, chloroplastic OS=Brassica napus GN=ACL1.A1
PE=2 SV=2
Length = 134
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 35/46 (76%)
Query: 50 NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
R VSC+AKPETV+KV +IV++QL+L + + +E+KF+ LG +S
Sbjct: 45 TRLSVSCAAKPETVEKVSKIVKKQLSLKDDQNVVAETKFADLGADS 90
>sp|P23235|ACP2_SPIOL Acyl carrier protein 2, chloroplastic OS=Spinacia oleracea
GN=ACL1.2 PE=1 SV=1
Length = 130
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 32 LKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSAL 91
LK ++ WR R P + VSC+AKPE V KV +IV+ QLAL + ++T E+KFS +
Sbjct: 27 LKSSVTFWR--RTPVMPRG-LSVSCAAKPEMVTKVSDIVKSQLALAEDAKVTGETKFSEI 83
Query: 92 GGNS 95
G +S
Sbjct: 84 GADS 87
>sp|O04652|ACP5_ARATH Acyl carrier protein 5, chloroplastic OS=Arabidopsis thaliana
GN=ACP5 PE=3 SV=1
Length = 139
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 58/94 (61%), Gaps = 12/94 (12%)
Query: 2 ATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPE 61
A FSA T+ F + + ++ NN E+T+NL ++ + P+ R VSC+ K E
Sbjct: 13 APFSA-TTTRFCLNKQATIFNN---EKTNNLSFSL----RRLMPA----RLAVSCAVKQE 60
Query: 62 TVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
TV+KV EIV++QL+L + ++T+ +KF+ LG +S
Sbjct: 61 TVEKVSEIVKKQLSLTDDQKVTAGTKFTELGADS 94
>sp|P02902|ACP1_HORVU Acyl carrier protein 1, chloroplastic OS=Hordeum vulgare GN=ACL1.1
PE=1 SV=2
Length = 149
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%), Gaps = 6/51 (11%)
Query: 51 RFCVSCSA------KPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
RF + C+A K ETV KVC IV++QLA+P T +T+ESKFS LG +S
Sbjct: 54 RFKICCAAMGEAQAKKETVDKVCMIVKKQLAVPDGTPVTAESKFSELGADS 104
>sp|P11829|ACP1_ARATH Acyl carrier protein 1, chloroplastic OS=Arabidopsis thaliana
GN=ACP1 PE=1 SV=1
Length = 137
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%)
Query: 46 SLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNS 95
S+ + R VSC+AK ET++KV IV++QL+L + ++ +E+KF+ LG +S
Sbjct: 44 SIPSRRLSVSCAAKQETIEKVSAIVKKQLSLTPDKKVVAETKFADLGADS 93
>sp|Q96529|PURA_ARATH Adenylosuccinate synthetase, chloroplastic OS=Arabidopsis
thaliana GN=PURA PE=1 SV=1
Length = 490
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%)
Query: 30 SNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFS 89
SN + A+GG R+P L R VSCSAK V + A + + S S+ S
Sbjct: 10 SNPRFAVGGPYHRRYPPLHHPRSFVSCSAKRPAVSASLSVAADSAATESLGRIGSLSQVS 69
Query: 90 ALGG 93
+ G
Sbjct: 70 GVLG 73
>sp|Q54B49|PKS45_DICDI Probable polyketide synthase 45 OS=Dictyostelium discoideum GN=pks45
PE=3 SV=2
Length = 3092
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 8 TSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVC 67
++V+ PS+K LS N+ + +++ + KTN++ +SCS K +
Sbjct: 1034 SAVLLLPSMKTYLSTNITPSGKNEYRVSF------HYKDKKTNKWSLSCSGKFSITKHND 1087
Query: 68 EIVRR 72
E+VR+
Sbjct: 1088 EVVRK 1092
>sp|Q54B51|PKS44_DICDI Probable polyketide synthase 44 OS=Dictyostelium discoideum GN=pks44
PE=3 SV=1
Length = 3078
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 8 TSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKPETVQKVC 67
++++ + S+K LS N+I + +++ + KTN++ +SCS + T +
Sbjct: 1019 SAILLSSSMKTYLSTNIIPSGKNEYRVSF------HYKDKKTNKWILSCSGRLSTTKHND 1072
Query: 68 EIVRR 72
E+V++
Sbjct: 1073 EVVKK 1077
>sp|A4F929|PSUG_SACEN Pseudouridine-5'-phosphate glycosidase OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=psuG PE=3 SV=1
Length = 303
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 45/122 (36%), Gaps = 4/122 (3%)
Query: 1 MATFSAITSVIFAPSLKPSLSNNVIAERTSNLKMAIGGWRKNRFPSLKTNRFCVSCSAKP 60
+ T ++ V+ + K L ER L + + G+R RFP
Sbjct: 144 LVTLASTPLVLVSAGAKSILDLAATLERLETLNIPVVGYRTRRFPGFYVADSGHDLEHSV 203
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRI----WDWCRRGKLPEHHN 116
+T Q+V +V + AL + L + EL RR+ W+ R + H +
Sbjct: 204 DTPQEVAALVEARDALELRSALLVANPIPPERQLDPELHRRVLAEAWEEAERQGISGHDS 263
Query: 117 GP 118
P
Sbjct: 264 TP 265
>sp|Q48IB1|DNAE2_PSE14 Error-prone DNA polymerase OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=dnaE2 PE=3 SV=1
Length = 1031
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 65 KVCEIVRRQLALPAETELTSESKFSALG---GNSDELRRRIWDWCRRGKLPEH 114
K+ + R L +P E E A G G +DELRR + W R G L H
Sbjct: 632 KLKSVFERTLGVPLFQEQVMEVAIIAAGYTPGEADELRRAMAAWKRHGGLEPH 684
>sp|Q9I5Q2|DNAE2_PSEAE Error-prone DNA polymerase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaE2 PE=3
SV=1
Length = 1031
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 68 EIVRRQLALPAETELTSESKFSALG---GNSDELRRRIWDWCRRGKLPEHH 115
E+ R L +P E E A G +DELRR + W R G L EHH
Sbjct: 638 EVFERTLGVPLFQEQVMELAIVAADYTPGEADELRRSMAAWKRHGGL-EHH 687
>sp|Q8XRN1|DNAE2_RALSO Error-prone DNA polymerase OS=Ralstonia solanacearum (strain
GMI1000) GN=dnaE2 PE=3 SV=1
Length = 1075
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 65 KVCEIVRRQLALPAETELTSESKFSALGGNSDE---LRRRIWDWCRRGKLPEHH 115
+V ++ R L +P E E A G +DE LRR + W R+G L +H
Sbjct: 673 EVKAVLERTLGVPIFQEQVMEIAMKAGGFTADEADRLRRDMAAWKRKGNLTQHQ 726
>sp|Q63XR8|DNAE2_BURPS Error-prone DNA polymerase OS=Burkholderia pseudomallei (strain
K96243) GN=dnaE2 PE=3 SV=1
Length = 1072
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKFSALG---GNSDELRRRIWDWCRRGKLPEHH 115
E +++V E R L +P E + A G G +D LRR + W R+G L ++H
Sbjct: 670 EALERVLE---RTLGIPIFQEQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYH 724
>sp|Q62F99|DNAE2_BURMA Error-prone DNA polymerase OS=Burkholderia mallei (strain ATCC
23344) GN=dnaE2 PE=3 SV=1
Length = 1063
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 61 ETVQKVCEIVRRQLALPAETELTSESKFSALG---GNSDELRRRIWDWCRRGKLPEHH 115
E +++V E R L +P E + A G G +D LRR + W R+G L ++H
Sbjct: 670 EALERVLE---RTLGIPIFQEQVMQIAIVAAGFTPGEADALRRAMAAWKRKGDLGKYH 724
>sp|A5GI02|SECA_SYNPW Protein translocase subunit SecA OS=Synechococcus sp. (strain
WH7803) GN=secA PE=3 SV=1
Length = 955
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRSGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|Q6NRH1|DCAF8_XENLA DDB1- and CUL4-associated factor 8 OS=Xenopus laevis GN=dcaf8 PE=2
SV=1
Length = 601
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 89 SALGGNSDELRRRIWDWCRRGKLPEHHNGPRGS 121
+ L SD+L+ +WDW RR + E +G + +
Sbjct: 209 TCLASGSDDLKVVVWDWVRRKPVLEFESGHKSN 241
>sp|Q7UZM1|SECA_PROMP Protein translocase subunit SecA OS=Prochlorococcus marinus subsp.
pastoris (strain CCMP1986 / MED4) GN=secA PE=3 SV=1
Length = 943
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRSGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|A2BZ24|SECA_PROM5 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9515) GN=secA PE=3 SV=1
Length = 943
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRSGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|Q318A2|SECA_PROM9 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9312) GN=secA PE=3 SV=1
Length = 943
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|A2BTM1|SECA_PROMS Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
AS9601) GN=secA PE=3 SV=1
Length = 943
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|A3PFC8|SECA_PROM0 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9301) GN=secA PE=3 SV=1
Length = 943
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|A8G7E5|SECA_PROM2 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9215) GN=secA PE=3 SV=1
Length = 943
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|A2C5Z6|SECA_PROM3 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9303) GN=secA PE=3 SV=1
Length = 951
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|P24125|V51K_BPL79 51.5 kDa protein OS=Lactococcus phage (isolate 7-9) PE=4 SV=1
Length = 452
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 37 GGWRKNRFPSLKTNRFCVSCSAKPETVQKVCEIV---------RRQLALPAETELTSESK 87
GGW+K ++ + C CSA QK+C + +L L AE EL + K
Sbjct: 315 GGWKKKGQKNIVQAKQCPDCSAMWPLSQKMCNLCGHDFSIEEKHEKLRLEAELELIEKEK 374
>sp|Q5N2Q7|SECA_SYNP6 Protein translocase subunit SecA OS=Synechococcus sp. (strain ATCC
27144 / PCC 6301 / SAUG 1402/1) GN=secA PE=3 SV=1
Length = 948
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R+ A+ T + LGGN+D + R
Sbjct: 475 NAKPENVEREAEIVAQAGRRGAVTISTNMAGRGTDIILGGNADYMAR 521
>sp|Q55357|SECA_SYNE7 Protein translocase subunit SecA OS=Synechococcus elongatus (strain
PCC 7942) GN=secA PE=3 SV=1
Length = 948
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R+ A+ T + LGGN+D + R
Sbjct: 475 NAKPENVEREAEIVAQAGRRGAVTISTNMAGRGTDIILGGNADYMAR 521
>sp|Q7V975|SECA_PROMM Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9313) GN=secA PE=3 SV=1
Length = 948
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|A9BD85|SECA_PROM4 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
MIT 9211) GN=secA PE=3 SV=1
Length = 945
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMAR 521
>sp|Q5SUV1|RSAD1_MOUSE Radical S-adenosyl methionine domain-containing protein 1,
mitochondrial OS=Mus musculus GN=Rsad1 PE=2 SV=1
Length = 442
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGG 93
A P TV V E V +++ LPA++E+T E+ ++ G
Sbjct: 104 ASPHTVAAVLEAVAQEVYLPADSEVTLEANPTSAPG 139
>sp|Q28I90|DCAF8_XENTR DDB1- and CUL4-associated factor 8 OS=Xenopus tropicalis GN=dcaf8
PE=2 SV=1
Length = 604
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 91 LGGNSDELRRRIWDWCRRGKLPEHHNGPRGS 121
L SD+L+ +WDW RR + E +G + +
Sbjct: 214 LASGSDDLKVVVWDWVRRKPVLEFESGHKSN 244
>sp|A2C591|SECA_PROM1 Protein translocase subunit SecA OS=Prochlorococcus marinus (strain
NATL1A) GN=secA PE=3 SV=1
Length = 944
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 57 SAKPETVQKVCEIVR---RQLALPAETELTSESKFSALGGNSDELRR 100
+AKPE V++ EIV R A+ T + LGGNSD + R
Sbjct: 475 NAKPENVEREAEIVAQAGRAGAVTIATNMAGRGTDIILGGNSDYMAR 521
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,247,659
Number of Sequences: 539616
Number of extensions: 1476788
Number of successful extensions: 3749
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 3723
Number of HSP's gapped (non-prelim): 49
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)