Query 033331
Match_columns 121
No_of_seqs 180 out of 1156
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 12:36:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033331.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033331hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1748 Acyl carrier protein/N 99.8 6.6E-20 1.4E-24 136.3 2.6 56 56-112 48-104 (131)
2 PRK07117 acyl carrier protein; 99.6 2.1E-16 4.7E-21 107.6 5.3 54 58-112 2-56 (79)
3 PRK05828 acyl carrier protein; 99.6 6.3E-15 1.4E-19 101.5 5.8 56 57-113 1-57 (84)
4 PRK05883 acyl carrier protein; 99.5 1.4E-14 3.1E-19 100.6 6.2 60 52-113 6-66 (91)
5 PRK05350 acyl carrier protein; 99.5 1.6E-14 3.5E-19 97.4 5.5 56 57-113 2-58 (82)
6 PRK06508 acyl carrier protein; 99.5 1.9E-14 4.1E-19 101.0 5.5 53 60-113 2-55 (93)
7 PRK08172 putative acyl carrier 99.5 1.6E-14 3.5E-19 98.6 5.1 53 60-113 3-56 (82)
8 PRK07639 acyl carrier protein; 99.5 3.5E-14 7.5E-19 97.7 6.5 55 57-111 1-56 (86)
9 PRK12449 acyl carrier protein; 99.5 4.3E-14 9.4E-19 94.1 6.1 56 57-113 1-57 (80)
10 CHL00124 acpP acyl carrier pro 99.5 5.5E-14 1.2E-18 93.9 5.3 56 57-113 1-57 (82)
11 PTZ00171 acyl carrier protein; 99.5 1E-13 2.2E-18 104.5 6.4 58 54-112 63-121 (148)
12 COG0236 AcpP Acyl carrier prot 99.4 2E-13 4.4E-18 91.6 5.8 54 59-113 3-57 (80)
13 TIGR00517 acyl_carrier acyl ca 99.4 1.9E-13 4.2E-18 90.3 5.3 53 60-113 2-55 (77)
14 PRK09184 acyl carrier protein; 99.4 7.3E-13 1.6E-17 92.1 5.6 56 58-113 3-62 (89)
15 PRK07081 acyl carrier protein; 99.3 3.7E-12 8E-17 86.9 3.8 56 63-118 2-60 (83)
16 PRK00982 acpP acyl carrier pro 99.2 2.8E-11 6E-16 79.8 5.0 53 60-113 2-55 (78)
17 PF00550 PP-binding: Phosphopa 99.2 9.6E-11 2.1E-15 74.1 5.8 48 64-112 1-48 (67)
18 PRK05087 D-alanine--poly(phosp 99.1 7.6E-11 1.7E-15 80.1 4.7 57 61-118 2-61 (78)
19 TIGR01688 dltC D-alanine--poly 98.7 1.7E-08 3.6E-13 68.5 3.0 54 64-118 2-58 (73)
20 PF14573 PP-binding_2: Acyl-ca 98.2 2.5E-06 5.4E-11 60.6 4.2 49 61-111 10-64 (96)
21 TIGR02813 omega_3_PfaA polyket 98.1 2.4E-06 5.3E-11 86.2 5.3 51 59-110 1305-1356(2582)
22 smart00823 PKS_PP Phosphopante 98.0 2.4E-05 5.2E-10 48.8 6.0 54 60-113 11-64 (86)
23 PF07377 DUF1493: Protein of u 97.6 0.00017 3.8E-09 51.3 6.0 55 60-114 2-60 (111)
24 PRK06060 acyl-CoA synthetase; 97.3 0.00043 9.4E-09 60.6 5.9 53 61-113 545-597 (705)
25 TIGR03443 alpha_am_amid L-amin 96.9 0.0018 4E-08 60.7 5.9 53 60-113 847-899 (1389)
26 TIGR02813 omega_3_PfaA polyket 96.8 0.0014 3.1E-08 66.9 4.5 52 58-110 1208-1260(2582)
27 PRK10252 entF enterobactin syn 96.6 0.0047 1E-07 57.2 5.8 51 59-112 976-1026(1296)
28 KOG1202 Animal-type fatty acid 96.3 0.0035 7.6E-08 61.5 3.3 52 62-113 2005-2056(2376)
29 PRK12467 peptide synthase; Pro 95.9 0.015 3.2E-07 60.9 5.9 52 58-112 3602-3653(3956)
30 PRK05691 peptide synthase; Val 95.2 0.032 6.9E-07 58.8 5.7 52 58-112 583-634 (4334)
31 PRK12316 peptide synthase; Pro 95.2 0.036 7.9E-07 59.3 5.9 54 57-113 5068-5121(5163)
32 PRK12467 peptide synthase; Pro 95.1 0.037 8.1E-07 58.1 5.9 52 58-112 1027-1078(3956)
33 PRK05691 peptide synthase; Val 94.8 0.054 1.2E-06 57.2 6.0 54 57-113 4237-4290(4334)
34 PRK12316 peptide synthase; Pro 94.4 0.068 1.5E-06 57.4 5.6 54 57-113 2512-2565(5163)
35 COG3433 Aryl carrier domain [S 92.5 0.16 3.5E-06 34.9 3.2 41 67-108 4-44 (74)
36 TIGR02372 4_coum_CoA_lig 4-cou 90.1 0.85 1.8E-05 38.3 5.8 57 59-115 5-71 (386)
37 PF08766 DEK_C: DEK C terminal 66.6 10 0.00022 23.5 3.4 23 92-114 17-39 (54)
38 TIGR00855 L12 ribosomal protei 59.3 9.1 0.0002 28.6 2.5 23 94-116 17-39 (126)
39 PRK00157 rplL 50S ribosomal pr 59.0 10 0.00022 28.2 2.7 22 95-116 17-38 (123)
40 CHL00083 rpl12 ribosomal prote 55.8 11 0.00025 28.2 2.5 22 95-116 17-38 (131)
41 cd01763 Sumo Small ubiquitin-r 47.6 2.6 5.7E-05 28.3 -1.8 46 58-104 29-83 (87)
42 cd00387 Ribosomal_L7_L12 Ribos 44.3 25 0.00055 26.0 2.8 20 95-114 15-34 (127)
43 smart00760 Bac_DnaA_C Bacteria 42.4 14 0.00029 23.2 1.0 24 63-87 2-25 (60)
44 KOG2431 1, 2-alpha-mannosidase 40.1 14 0.00031 33.2 1.1 29 81-110 118-153 (546)
45 PF08299 Bac_DnaA_C: Bacterial 39.5 12 0.00026 24.4 0.4 26 62-88 1-26 (70)
46 COG1669 Predicted nucleotidylt 39.3 1.4E+02 0.0031 21.3 6.1 59 60-118 8-79 (97)
47 COG0222 RplL Ribosomal protein 36.4 32 0.00069 25.8 2.3 20 96-115 18-37 (124)
48 PF11976 Rad60-SLD: Ubiquitin- 33.6 1.9 4.1E-05 27.3 -4.1 43 59-101 19-70 (72)
49 PLN00204 CP12 gene family prot 30.3 96 0.0021 23.3 4.0 27 50-76 45-71 (126)
50 PTZ00397 macrophage migration 30.3 60 0.0013 22.5 2.8 23 59-82 74-96 (116)
51 cd01793 Fubi Fubi ubiquitin-li 28.8 4.5 9.7E-05 26.1 -3.0 38 58-95 16-61 (74)
52 KOG4244 Failed axon connection 28.3 35 0.00075 28.8 1.5 60 59-120 66-128 (281)
53 PF03847 TFIID_20kDa: Transcri 28.1 44 0.00094 22.1 1.7 21 91-111 48-68 (68)
54 PF01361 Tautomerase: Tautomer 27.4 63 0.0014 19.6 2.3 23 58-81 15-37 (60)
55 smart00151 SWIB SWI complex, B 26.7 1.3E+02 0.0027 19.8 3.8 54 55-109 18-75 (77)
56 KOG1178 Non-ribosomal peptide 26.6 49 0.0011 32.4 2.3 32 80-111 614-645 (1032)
57 COG1942 Uncharacterized protei 25.5 83 0.0018 20.9 2.7 23 58-81 17-39 (69)
58 smart00213 UBQ Ubiquitin homol 24.8 51 0.0011 19.4 1.5 18 59-76 18-35 (64)
59 PF00240 ubiquitin: Ubiquitin 24.6 78 0.0017 19.4 2.3 44 52-97 8-60 (69)
60 cd01807 GDX_N ubiquitin-like d 24.1 42 0.00091 21.4 1.0 35 59-93 19-61 (74)
61 PRK00010 rplE 50S ribosomal pr 23.0 1.1E+02 0.0024 23.7 3.4 42 28-70 59-107 (179)
62 PF01842 ACT: ACT domain; Int 22.8 73 0.0016 18.7 1.9 59 51-110 2-66 (66)
63 PRK00194 hypothetical protein; 21.0 2.2E+02 0.0047 18.4 4.1 60 51-112 5-75 (90)
64 cd01798 parkin_N amino-termina 21.0 73 0.0016 19.9 1.7 19 59-77 17-35 (70)
65 PF14000 Packaging_FI: DNA pac 20.8 3.6E+02 0.0078 20.0 5.9 47 58-116 1-48 (125)
66 PF01532 Glyco_hydro_47: Glyco 20.7 38 0.00082 29.3 0.4 17 93-110 38-54 (452)
67 PRK01964 4-oxalocrotonate taut 20.5 1.1E+02 0.0025 18.8 2.5 23 58-81 16-38 (64)
No 1
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.78 E-value=6.6e-20 Score=136.32 Aligned_cols=56 Identities=25% Similarity=0.331 Sum_probs=54.4
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCC
Q 033331 56 CSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 56 c~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
|++|+++.+||.+||+++..+ ++++++++++|. |||+||||+|||||+|||||||+
T Consensus 48 ~l~k~~v~~RVl~VVk~~dki-~~~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiE 104 (131)
T KOG1748|consen 48 CLAKKEVVDRVLDVVKKFDKI-DPSKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIE 104 (131)
T ss_pred hhhHHHHHHHHHHHHHHhhcC-CccccchhhHHHHhcCCcccccchhhhhhHHHhCCc
Confidence 999999999999999999999 999999999998 99999999999999999999984
No 2
>PRK07117 acyl carrier protein; Validated
Probab=99.65 E-value=2.1e-16 Score=107.63 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHHHHh-CCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 58 AKPETVQKVCEIVRRQL-ALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l-~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
++++++++|+++|++++ ++ ++++|+++++|.|||+||||++|||+++|++|||.
T Consensus 2 ~~~ei~~~v~~ii~e~~p~i-~~~~I~~~~~l~DLg~DSlD~veiv~~led~f~i~ 56 (79)
T PRK07117 2 DKQRIFDILVRHIREVLPDL-DQHQFQPEDSLVDLGANSMDRAEIVIMTLESLSLK 56 (79)
T ss_pred CHHHHHHHHHHHHHHHcCCC-CHHHCCCCCChhhcCCChHHHHHHHHHHHHHHCCc
Confidence 57899999999999999 79 99999999999999999999999999999999983
No 3
>PRK05828 acyl carrier protein; Validated
Probab=99.56 E-value=6.3e-15 Score=101.50 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHH-HhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRR-QLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~-~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++.|++++|++|+++ ++++ +.+.++++++|.|||+||||++|++++||++|||+-
T Consensus 1 m~~~eI~~~i~~ii~e~~~~~-~~d~i~~~~~~~dLg~DSLd~velv~~lE~~f~I~i 57 (84)
T PRK05828 1 MQEMEILLKIKEIAKKKNFAV-TLDESNINKPYRELKIDSLDMFSIIVSLESEFNIEF 57 (84)
T ss_pred CCHHHHHHHHHHHHHHhccCC-CcccccCCCCHHhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 4678999999999998 6888 888999999999999999999999999999999853
No 4
>PRK05883 acyl carrier protein; Validated
Probab=99.54 E-value=1.4e-14 Score=100.61 Aligned_cols=60 Identities=17% Similarity=0.207 Sum_probs=55.2
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
||- |.++.++.++|++||++++++ +++.|+++++|. |||+|||+++++++.||++|||..
T Consensus 6 ~~~-~~~~~~I~~~l~~iia~~l~v-~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i 66 (91)
T PRK05883 6 FAM-TSSPSTVSATLLSILRDDLNV-DLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVAL 66 (91)
T ss_pred cCC-CCCHHHHHHHHHHHHHHHhCC-ChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCc
Confidence 444 677888999999999999999 889999999996 999999999999999999999954
No 5
>PRK05350 acyl carrier protein; Provisional
Probab=99.52 E-value=1.6e-14 Score=97.36 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++++++++|++++++++++ ++.+|+++++|. |||+||||++||+++||++|||.-
T Consensus 2 m~~~~i~~~v~~ii~~~~~~-~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i 58 (82)
T PRK05350 2 MTREEILERLRAILVELFEI-DPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKI 58 (82)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCcc
Confidence 46889999999999999999 889999999986 999999999999999999999963
No 6
>PRK06508 acyl carrier protein; Provisional
Probab=99.52 E-value=1.9e-14 Score=100.96 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
..++++|++|+++++++ ++++|+++++|. |||+||||++||+++||++|||+-
T Consensus 2 ~~i~ekv~~Ilae~~~v-d~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i 55 (93)
T PRK06508 2 SSTFDKVADIIAETSDI-PRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKL 55 (93)
T ss_pred hHHHHHHHHHHHHHhCC-CHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCcc
Confidence 46899999999999999 999999999987 999999999999999999999853
No 7
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.52 E-value=1.6e-14 Score=98.65 Aligned_cols=53 Identities=9% Similarity=0.151 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+++++|++|+++++++ ++++|+++++|. |||+||||+++|+++||++|||.-
T Consensus 3 m~i~~~v~~iiae~l~v-~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i 56 (82)
T PRK08172 3 MDIEARVKKVITSCIAV-DVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISC 56 (82)
T ss_pred ccHHHHHHHHHHHHHCC-CHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 37999999999999999 999999999996 999999999999999999999954
No 8
>PRK07639 acyl carrier protein; Provisional
Probab=99.51 E-value=3.5e-14 Score=97.69 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=50.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKL 111 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~I 111 (121)
+++++++++|++||++++++++.++++++++|. |||+||||++|++++||++|||
T Consensus 1 M~~~ei~~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi 56 (86)
T PRK07639 1 MRREALKNAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKL 56 (86)
T ss_pred CCHHHHHHHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCC
Confidence 367899999999999999994447899999998 9999999999999999999998
No 9
>PRK12449 acyl carrier protein; Provisional
Probab=99.50 E-value=4.3e-14 Score=94.05 Aligned_cols=56 Identities=14% Similarity=0.182 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
++++++.++|++++++++++ ++.+|+++++|. |||+||+|+++|+++||++|||.-
T Consensus 1 m~~~~i~~~l~~il~~~~~~-~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i 57 (80)
T PRK12449 1 MTREEIFERLINLIQKQRSY-LSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAI 57 (80)
T ss_pred CCHHHHHHHHHHHHHHHhCC-CccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCC
Confidence 35789999999999999999 777999999996 999999999999999999999953
No 10
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.48 E-value=5.5e-14 Score=93.94 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++++++++|++++++.+++ ++..|+++++|. |||+|||+++||++.||++|||.-
T Consensus 1 M~~~~i~~~l~~ii~~~~~~-~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i 57 (82)
T CHL00124 1 MTKNDIFEKVQSIVAEQLGI-EKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEI 57 (82)
T ss_pred CCHHHHHHHHHHHHHHHHCC-CHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCcc
Confidence 46889999999999999999 888999999998 799999999999999999999854
No 11
>PTZ00171 acyl carrier protein; Provisional
Probab=99.47 E-value=1e-13 Score=104.50 Aligned_cols=58 Identities=19% Similarity=0.240 Sum_probs=54.0
Q ss_pred eecCChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCC
Q 033331 54 VSCSAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 54 v~c~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
..-.++++++++|++|+.+++++ ++++|+++++|. |||+||||+||||++||++|||.
T Consensus 63 ~~~~~~~~v~~~l~eiiae~l~v-d~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~ 121 (148)
T PTZ00171 63 QYLLSKEDVLTRVKKVVKNFEKV-DASKITPESNFVKDLGADSLDVVELLIAIEQEFNLT 121 (148)
T ss_pred ccccCHHHHHHHHHHHHHHHhCC-CHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCc
Confidence 33477999999999999999999 889999999997 99999999999999999999985
No 12
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.44 E-value=2e-13 Score=91.59 Aligned_cols=54 Identities=24% Similarity=0.279 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+.+.++|++|+.+++++ +..++++++.|. |||+||||++||+++||++|||.-
T Consensus 3 ~~~~~~~i~~ii~e~l~~-~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i 57 (80)
T COG0236 3 MEAIEERVKDIIAEQLGV-DEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEI 57 (80)
T ss_pred hHHHHHHHHHHHHHHhCC-chhhcCcccccccccCccHHHHHHHHHHHHHHHCCcC
Confidence 356999999999999999 788999999998 899999999999999999999853
No 13
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.43 E-value=1.9e-13 Score=90.33 Aligned_cols=53 Identities=23% Similarity=0.310 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
++++++|++++++.+++ ++.+|+++++|. |||+|||+++||++.||++|||.-
T Consensus 2 ~~i~~~l~~il~~~~~~-~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i 55 (77)
T TIGR00517 2 QEIFEKVKAIIKEQLNV-DEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEI 55 (77)
T ss_pred hHHHHHHHHHHHHHHCC-CHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999 888999999996 999999999999999999999853
No 14
>PRK09184 acyl carrier protein; Provisional
Probab=99.38 E-value=7.3e-13 Score=92.12 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHHHhCC--CCCCccCCCCcc-c-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 58 AKPETVQKVCEIVRRQLAL--PAETELTSESKF-S-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l--~d~~~It~eS~F-~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
..++++++|+++|.+++++ -++++|+++++| . |||+||||++||++.+|++|||+-
T Consensus 3 ~~~~l~~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i 62 (89)
T PRK09184 3 SMTALERELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQL 62 (89)
T ss_pred hHHHHHHHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcC
Confidence 3568999999999999985 278899999997 4 899999999999999999999965
No 15
>PRK07081 acyl carrier protein; Provisional
Probab=99.27 E-value=3.7e-12 Score=86.87 Aligned_cols=56 Identities=9% Similarity=0.083 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhCCC-CCCccCCCCccccCCCChHHHHHHHHHHHHhcCC--CCCCCCC
Q 033331 63 VQKVCEIVRRQLALP-AETELTSESKFSALGGNSDELRRRIWDWCRRGKL--PEHHNGP 118 (121)
Q Consensus 63 ~ekV~~IV~~~l~l~-d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~I--p~~~~~p 118 (121)
.++|++||.+++++. +++.++++++|.|||+|||+++++++.||++||| |+.++.|
T Consensus 2 ~~~i~~ii~~~~~~~~~~~~i~~d~~l~dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~ 60 (83)
T PRK07081 2 KNTIRTILKKVAKLEVPIDSIADDADLYEAGLSSLATVQLMLAIEDAFDIEIPDEMLNR 60 (83)
T ss_pred hHHHHHHHHHHHcCCCCHHhcCCCCCHhhcCCCHHHHHHHHHHHHHHhCCcCCHHHcCH
Confidence 578999999986552 5578999999999999999999999999999986 6666655
No 16
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.20 E-value=2.8e-11 Score=79.84 Aligned_cols=53 Identities=26% Similarity=0.313 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCcc-ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F-~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.++.+.|++++++.+++ ++..++++++| .|||+|||++++|+..+|++|||+-
T Consensus 2 ~~i~~~l~~~l~~~l~~-~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i 55 (78)
T PRK00982 2 SEIFEKVKKIIVEQLGV-DEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEI 55 (78)
T ss_pred hHHHHHHHHHHHHHHCC-CHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 46889999999999999 78899999999 5999999999999999999999854
No 17
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.15 E-value=9.6e-11 Score=74.14 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 64 QKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 64 ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
|+|++++++.+++ +..+++++++|.++|+|||+.++++..||++||+.
T Consensus 1 e~l~~~~~~~l~~-~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~ 48 (67)
T PF00550_consen 1 EQLREIIAEVLGV-DPEEIDPDTDFFDLGLDSLDAIELVSELEEEFGIK 48 (67)
T ss_dssp HHHHHHHHHHHTS-SGGCTSTTSBTTTTTSSHHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHHCc-CHhhCCCCCCHHHhCCchHHHHHHHHHHHHHHcCC
Confidence 6899999999998 88899999999999999999999999999999884
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.12 E-value=7.6e-11 Score=80.12 Aligned_cols=57 Identities=9% Similarity=-0.052 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCC--CCCCCCC
Q 033331 61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKL--PEHHNGP 118 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~I--p~~~~~p 118 (121)
++.++|.+++.+.++. ++.++++++++. +.++|||++|||++.||++||| |+.++-|
T Consensus 2 ~i~~~I~~iL~~~~~~-~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~ 61 (78)
T PRK05087 2 DFKEQVLDILEELTGE-DIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDR 61 (78)
T ss_pred cHHHHHHHHHHHHhCC-ChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCH
Confidence 5789999999999998 777899999998 5558999999999999999987 5555444
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=98.66 E-value=1.7e-08 Score=68.49 Aligned_cols=54 Identities=9% Similarity=0.029 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhCCCCCCccCCCCccccCCC-ChHHHHHHHHHHHHhcCC--CCCCCCC
Q 033331 64 QKVCEIVRRQLALPAETELTSESKFSALGG-NSDELRRRIWDWCRRGKL--PEHHNGP 118 (121)
Q Consensus 64 ekV~~IV~~~l~l~d~~~It~eS~F~DLGa-DSLD~VEIVm~LEdeF~I--p~~~~~p 118 (121)
++|.+|+.+..+. +.....++.++.+.|+ ||+++|+++..||++||| |..++-|
T Consensus 2 e~i~eIL~~i~~~-~~~~~~~d~~L~~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~ 58 (73)
T TIGR01688 2 NGVLDILAEVTGS-DDVKENPDLELFEEGLLDSFGTVQLLLEIQNQFDIDVPISEFDR 58 (73)
T ss_pred hHHHHHHHHHhcC-cccccCccHHHHHccchhHHHHHHHHHHHHHHhCCccCHHHcCH
Confidence 6889999998877 5545688999999998 999999999999999988 5544444
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=98.17 E-value=2.5e-06 Score=60.63 Aligned_cols=49 Identities=14% Similarity=0.121 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCCCCccc------cCCCChHHHHHHHHHHHHhcCC
Q 033331 61 ETVQKVCEIVRRQLALPAETELTSESKFS------ALGGNSDELRRRIWDWCRRGKL 111 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d~~~It~eS~F~------DLGaDSLD~VEIVm~LEdeF~I 111 (121)
-+.+++..++++.+. +..++++.+++. ++-|||||+||+|+.+|++|+|
T Consensus 10 av~~~i~g~~kkyl~--~~~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V 64 (96)
T PF14573_consen 10 AVTEYILGMLKKYLS--EGEEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDV 64 (96)
T ss_dssp HHHHHHHHHHHTTB---TT----TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHcC--CCCccChhhhhHHhccccccccchhhhHHHHHhHHHHcCc
Confidence 466788888887764 455788887763 7899999999999999999988
No 21
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.15 E-value=2.4e-06 Score=86.19 Aligned_cols=51 Identities=14% Similarity=-0.010 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcC
Q 033331 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGK 110 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~ 110 (121)
..+++++|.+++.++++. +.+.++++++|. |||+|||+.+||++.||++|+
T Consensus 1305 ~~~v~~~vl~vvae~tgy-p~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~ 1356 (2582)
T TIGR02813 1305 LIQIQNVMLEVVADKTGY-PTEMLELEMDMEADLGIDSIKRVEILGTVQDTLP 1356 (2582)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcC
Confidence 358999999999999999 888999999998 999999999999999999997
No 22
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=98.01 E-value=2.4e-05 Score=48.76 Aligned_cols=54 Identities=19% Similarity=0.030 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
..+.+.+...+.+.++......+..++.|.++|+||+..+++...++++|+++-
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~dSl~~~~~~~~l~~~~~~~i 64 (86)
T smart00823 11 RLLLDLVREQVAAVLGHAAAEAIDPDRPFRDLGLDSLTAVELRNRLEAATGLRL 64 (86)
T ss_pred HHHHHHHHHHHHHHHCCCccccCCCCCCHHHcCchHHHHHHHHHHHHHHHCCCC
Confidence 346778889999998883333358899999999999999999999999998643
No 23
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.62 E-value=0.00017 Score=51.31 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhCCC---CCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCCC
Q 033331 60 PETVQKVCEIVRRQLALP---AETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPEH 114 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~---d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~~ 114 (121)
+++.++|.+.|++..+.+ ...+|++++.+. |||+|--|..|++-...++|||...
T Consensus 2 ~~i~~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~ 60 (111)
T PF07377_consen 2 DDIEQEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLS 60 (111)
T ss_pred chHHHHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcC
Confidence 578899999999999985 678899999998 9999999999999999999999654
No 24
>PRK06060 acyl-CoA synthetase; Validated
Probab=97.33 E-value=0.00043 Score=60.62 Aligned_cols=53 Identities=21% Similarity=0.156 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+.+.|++.+.+.++..+++.|.++..|.|||.|||..||+.-.|+++||++.
T Consensus 545 ~~~~~v~~~~a~vl~~~~~~~i~~~~~f~~lG~dSl~av~l~~~l~~~~g~~l 597 (705)
T PRK06060 545 LVVDAVCAEAAKMLGEPDPWSVDQDLAFSELGFDSQMTVTLCKRLAAVTGLRL 597 (705)
T ss_pred HHHHHHHHHHHHHhCCCChhhCCCCCChhhcCchHHHHHHHHHHHHHHhCCCC
Confidence 45678999999999996677899999999999999999999999999999854
No 25
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=96.90 E-value=0.0018 Score=60.71 Aligned_cols=53 Identities=19% Similarity=0.274 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.++.+.|.+++.+.++. +..+|.++.+|.+||.|||..++++..|+++||+..
T Consensus 847 ~~~~~~l~~~~~~vl~~-~~~~i~~~~~ff~lGgdSL~a~~l~~~l~~~~~~~l 899 (1389)
T TIGR03443 847 TETEREIRDLWLELLPN-RPATISPDDSFFDLGGHSILATRMIFELRKKLNVEL 899 (1389)
T ss_pred CHHHHHHHHHHHHHhCC-CccccCcCcchhhcCccHHHHHHHHHHHHHHhCCCc
Confidence 46788999999999998 677899999999999999999999999999998753
No 26
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=96.78 E-value=0.0014 Score=66.91 Aligned_cols=52 Identities=15% Similarity=0.036 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGK 110 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~ 110 (121)
...++.+.+.++|.++.|. +.+.++++.+|. |||+||++.+||+..++++|+
T Consensus 1208 ~~~~~~~~~l~vvae~tgy-p~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~ 1260 (2582)
T TIGR02813 1208 NDSAIQQVMMEVVAEKTGY-PTEMLELEMDMEADLGIDSIKRVEILGSVQEIIN 1260 (2582)
T ss_pred chhHHHHHHHHHHHhhccC-ChHhcccccccccccCcchhhhHHhhhhhhhhcc
Confidence 3467899999999999999 888999999999 999999999999999999997
No 27
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=96.55 E-value=0.0047 Score=57.20 Aligned_cols=51 Identities=20% Similarity=0.146 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
..++.+.|++|..+.+++ + .+..+.+|.+||.|||..++++..|+++||+.
T Consensus 976 ~~~~e~~l~~~~~~~l~~-~--~~~~~~~ff~lGg~Sl~a~~l~~~l~~~~~~~ 1026 (1296)
T PRK10252 976 KTGTETIIAAAFSSLLGC-D--VVDADADFFALGGHSLLAMKLAAQLSRQFARQ 1026 (1296)
T ss_pred CCHHHHHHHHHHHHHhCC-C--CCCCCcCHHHcCCChHHHHHHHHHHHHHhCCC
Confidence 457888999999999998 4 68999999999999999999999999999875
No 28
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=96.26 E-value=0.0035 Score=61.45 Aligned_cols=52 Identities=13% Similarity=0.037 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 62 TVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 62 t~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
---.+.+.|+..+|+-|-+.|..++++.|||+|||.-+||--.||++|+|=.
T Consensus 2005 ~~~dLiatiA~IlGlrD~~~vn~~asLaDLGlDSLMsvEikQtLER~~dlVL 2056 (2376)
T KOG1202|consen 2005 SGRDLIATIAHILGLRDLKAVNDDASLADLGLDSLMSVEIKQTLEREFDLVL 2056 (2376)
T ss_pred ccccHHHHHHHHhcchhHhhccCCCchhhccchhhhhHHHHHHHhhhhceee
Confidence 3345677788889998999999999999999999999999999999999843
No 29
>PRK12467 peptide synthase; Provisional
Probab=95.87 E-value=0.015 Score=60.89 Aligned_cols=52 Identities=19% Similarity=0.188 Sum_probs=47.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
...++.++|++|..+.|++ + .|..+.+|.|||.|||..+.++-.|+++||++
T Consensus 3602 p~~~~e~~l~~i~~~vL~~-~--~i~~~d~Ff~lGgdSl~a~~l~~~l~~~~g~~ 3653 (3956)
T PRK12467 3602 PRSEVEQQLAAIWADVLGV-E--QVGVTDNFFELGGDSLLALQVLSRIRQSLGLK 3653 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCC-C--CCCCCcchhcccchHHHHHHHHHHHHHHhCCC
Confidence 4568899999999999998 4 49999999999999999999999999999885
No 30
>PRK05691 peptide synthase; Validated
Probab=95.25 E-value=0.032 Score=58.84 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
...++.++|+++.+++|++ + .|.++.+|.+||.|||..|+++..++++||+.
T Consensus 583 ~~~~~e~~l~~~~~~vL~~-~--~i~~~~~ff~lGgdSL~a~~l~~~l~~~~g~~ 634 (4334)
T PRK05691 583 SGDELQARIAAIWCEQLKV-E--QVAADDHFFLLGGNSIAATQVVARLRDELGID 634 (4334)
T ss_pred CcchHHHHHHHHHHHHhCC-C--CCCcCCchhhcccchHHHHHHHHHHHHHhCCc
Confidence 3457889999999999998 4 68999999999999999999999999998874
No 31
>PRK12316 peptide synthase; Provisional
Probab=95.15 E-value=0.036 Score=59.30 Aligned_cols=54 Identities=22% Similarity=0.140 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+...++..+|++|.++.|++ + +|..+.+|.+||.|||..|.++..|+++||++.
T Consensus 5068 ~~~~~~e~~l~~i~~~vL~~-~--~i~~~~~Ff~lGgdSl~a~~l~~~l~~~~g~~l 5121 (5163)
T PRK12316 5068 APRSELEQQVAAIWAEVLQL-E--RVGLDDNFFELGGHSLLAIQVTSRIQLELGLEL 5121 (5163)
T ss_pred CCCcHHHHHHHHHHHHHhCC-C--CCCCCCChhhccchHHHHHHHHHHHHHHcCCCC
Confidence 34567899999999999988 4 599999999999999999999999999998754
No 32
>PRK12467 peptide synthase; Provisional
Probab=95.14 E-value=0.037 Score=58.07 Aligned_cols=52 Identities=19% Similarity=0.184 Sum_probs=47.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
...++.+.|++|..+.+++ + .|..+.+|.+||.|||..+.++..++++||++
T Consensus 1027 p~~~~e~~l~~i~~~vL~~-~--~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~ 1078 (3956)
T PRK12467 1027 PQTELEKRLAAIWADVLKV-E--RVGLTDNFFELGGHSLLATQVISRVRQRLGIQ 1078 (3956)
T ss_pred CCCHHHHHHHHHHHHHhCC-C--CCCCCCCchhccCccHHHHHHHHHHHHHhCCC
Confidence 3457889999999999988 4 59999999999999999999999999999875
No 33
>PRK05691 peptide synthase; Validated
Probab=94.82 E-value=0.054 Score=57.22 Aligned_cols=54 Identities=17% Similarity=0.097 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+.+.++..+|++|..+.|++ + +|..+.+|.+||.|||..|.++-.++++||+..
T Consensus 4237 ~p~~~~e~~l~~iw~~vL~~-~--~i~~~d~Ff~lGg~Sl~a~~l~~~~~~~~~~~~ 4290 (4334)
T PRK05691 4237 APRNELEQTLATIWADVLKV-E--RVGVHDNFFELGGHSLLATQIASRVQKALQRNV 4290 (4334)
T ss_pred CCCCHHHHHHHHHHHHHhCC-C--cCCCCCchhhcCCcHHHHHHHHHHHHHHhCCCc
Confidence 34668999999999999998 4 599999999999999999999999999998753
No 34
>PRK12316 peptide synthase; Provisional
Probab=94.40 E-value=0.068 Score=57.35 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+...++.++|++|..+.+++ + .|..+.+|.+||.|||..++++-.++++||++.
T Consensus 2512 ~p~~~~e~~l~~iw~~vL~~-~--~i~~~d~Ff~lGgdSl~a~~l~~~~~~~~g~~l 2565 (5163)
T PRK12316 2512 APQEGLEQRLAAIWQAVLKV-E--QVGLDDHFFELGGHSLLATQVVSRVRQDLGLEV 2565 (5163)
T ss_pred CCCCHHHHHHHHHHHHHhCC-C--ccCCCCchhhhcchHHHHHHHHHHHHHHhCCCc
Confidence 34567889999999999998 4 589999999999999999999999999998854
No 35
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.52 E-value=0.16 Score=34.89 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=32.5
Q ss_pred HHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHh
Q 033331 67 CEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRR 108 (121)
Q Consensus 67 ~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEde 108 (121)
.+.+.+-++. .+++++++.++.++|+||+-+|-++-.+-.+
T Consensus 4 r~~~~~Ll~e-~~~~l~dqeNLi~~GLDSiR~M~L~~~wR~~ 44 (74)
T COG3433 4 REQIAELLGE-SVEELDDQENLIDYGLDSIRMMALLERWRKR 44 (74)
T ss_pred HHHHHHHHcC-ChhhcCchhhHHHhchhHHHHHHHHHHHHHc
Confidence 3555555666 7788999999999999999999888776554
No 36
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=90.05 E-value=0.85 Score=38.28 Aligned_cols=57 Identities=12% Similarity=0.046 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHhCC--------CCCCccCCCCccc--cCCCChHHHHHHHHHHHHhcCCCCCC
Q 033331 59 KPETVQKVCEIVRRQLAL--------PAETELTSESKFS--ALGGNSDELRRRIWDWCRRGKLPEHH 115 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l--------~d~~~It~eS~F~--DLGaDSLD~VEIVm~LEdeF~Ip~~~ 115 (121)
...+...+..+|...++- ++...++.|+.+. ++|+|||+.++|+..+-+-|++.+-.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (386)
T TIGR02372 5 AEAVGRLLVSLIAAEQQEGRVQHHQMPEARLLTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTG 71 (386)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCchhhhcccccccccccccccHHHHHHHHHHHHHHhcccccc
Confidence 456778888888887743 1222388888884 89999999999999999999985543
No 37
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=66.62 E-value=10 Score=23.49 Aligned_cols=23 Identities=4% Similarity=-0.230 Sum_probs=14.5
Q ss_pred CCChHHHHHHHHHHHHhcCCCCC
Q 033331 92 GGNSDELRRRIWDWCRRGKLPEH 114 (121)
Q Consensus 92 GaDSLD~VEIVm~LEdeF~Ip~~ 114 (121)
++|++-.-.+.-.||++||++..
T Consensus 17 dl~~vT~k~vr~~Le~~~~~dL~ 39 (54)
T PF08766_consen 17 DLDTVTKKQVREQLEERFGVDLS 39 (54)
T ss_dssp -GGG--HHHHHHHHHHH-SS--S
T ss_pred CHhHhhHHHHHHHHHHHHCCCcH
Confidence 35677788999999999998764
No 38
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=59.32 E-value=9.1 Score=28.55 Aligned_cols=23 Identities=9% Similarity=-0.096 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHHhcCCCCCCC
Q 033331 94 NSDELRRRIWDWCRRGKLPEHHN 116 (121)
Q Consensus 94 DSLD~VEIVm~LEdeF~Ip~~~~ 116 (121)
.=|.+.|++-.||++|||+....
T Consensus 17 TllE~~eLv~~lee~fgV~a~a~ 39 (126)
T TIGR00855 17 TVLELSELVKALEEKFGVSAAAP 39 (126)
T ss_pred CHHHHHHHHHHHHHhcCCCccch
Confidence 33788999999999999988653
No 39
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=59.00 E-value=10 Score=28.19 Aligned_cols=22 Identities=9% Similarity=-0.108 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCCC
Q 033331 95 SDELRRRIWDWCRRGKLPEHHN 116 (121)
Q Consensus 95 SLD~VEIVm~LEdeF~Ip~~~~ 116 (121)
=|.+.|++-.||++|||+....
T Consensus 17 llE~~eLv~~lee~fgv~a~~~ 38 (123)
T PRK00157 17 VLELSELVKALEEKFGVSAAAP 38 (123)
T ss_pred HHHHHHHHHHHHHHcCCCccch
Confidence 3788999999999999987653
No 40
>CHL00083 rpl12 ribosomal protein L12
Probab=55.76 E-value=11 Score=28.16 Aligned_cols=22 Identities=5% Similarity=-0.259 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhcCCCCCCC
Q 033331 95 SDELRRRIWDWCRRGKLPEHHN 116 (121)
Q Consensus 95 SLD~VEIVm~LEdeF~Ip~~~~ 116 (121)
=|.+.|++-.||++|||+....
T Consensus 17 llE~~eLv~~le~~fgv~~~~~ 38 (131)
T CHL00083 17 LLEAAELVKQIEETFGVDASAP 38 (131)
T ss_pred HHHHHHHHHHHHHHcCCCccch
Confidence 3788999999999999987654
No 41
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=47.62 E-value=2.6 Score=28.33 Aligned_cols=46 Identities=11% Similarity=0.183 Sum_probs=35.4
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCChHHHHHHHHH
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGNSDELRRRIWD 104 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaDSLD~VEIVm~ 104 (121)
.+.+++++|++-+.+..++ +.+. |.++.+..|||+..-|++++++.
T Consensus 29 ~~~~~l~~l~~~y~~~~gi-~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~ 83 (87)
T cd01763 29 KRSTPLKKLMEAYCQRQGL-SMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLE 83 (87)
T ss_pred cCCCHHHHHHHHHHHHhCC-CccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEe
Confidence 4567999999999999998 4333 77777778888888777766543
No 42
>cd00387 Ribosomal_L7_L12 Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and
Probab=44.28 E-value=25 Score=26.01 Aligned_cols=20 Identities=5% Similarity=-0.192 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhcCCCCC
Q 033331 95 SDELRRRIWDWCRRGKLPEH 114 (121)
Q Consensus 95 SLD~VEIVm~LEdeF~Ip~~ 114 (121)
=|++.||+-.||++|||+..
T Consensus 15 llE~~eLv~~le~~~gv~~~ 34 (127)
T cd00387 15 LLEAAELVKALEEKFGVSAS 34 (127)
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 37889999999999999974
No 43
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=42.38 E-value=14 Score=23.15 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCc
Q 033331 63 VQKVCEIVRRQLALPAETELTSESK 87 (121)
Q Consensus 63 ~ekV~~IV~~~l~l~d~~~It~eS~ 87 (121)
.+.|.++|++.+++ +.++|...++
T Consensus 2 ~~~I~~~Va~~~~i-~~~~i~s~~R 25 (60)
T smart00760 2 IEEIIEAVAEYFGV-KPEDLKSKSR 25 (60)
T ss_pred HHHHHHHHHHHhCC-CHHHHhcCCC
Confidence 57889999999999 7878877776
No 44
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=40.09 E-value=14 Score=33.25 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=20.5
Q ss_pred ccCCCCc-cc---cCC---CChHHHHHHHHHHHHhcC
Q 033331 81 ELTSESK-FS---ALG---GNSDELRRRIWDWCRRGK 110 (121)
Q Consensus 81 ~It~eS~-F~---DLG---aDSLD~VEIVm~LEdeF~ 110 (121)
++.|-++ |. .|| +||||++ ++|+||+||.
T Consensus 118 ~l~Pvs~~~~d~fglGltiVDslDT~-~iMgle~e~~ 153 (546)
T KOG2431|consen 118 ELKPVSQSFSDWFGLGLTIVDSLDTA-MIMGLEDEFE 153 (546)
T ss_pred ccccchhcccccccccceEEechhHH-HHhhhHHHHH
Confidence 4555444 32 677 4999997 7889999983
No 45
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=39.53 E-value=12 Score=24.40 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHhCCCCCCccCCCCcc
Q 033331 62 TVQKVCEIVRRQLALPAETELTSESKF 88 (121)
Q Consensus 62 t~ekV~~IV~~~l~l~d~~~It~eS~F 88 (121)
|.++|.++|++.+++ +.++|...++.
T Consensus 1 t~~~Ii~~Va~~~~v-~~~~i~s~~R~ 26 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGV-SVEDIRSKSRK 26 (70)
T ss_dssp -HHHHHHHHHHHTT---HHHHHSS---
T ss_pred CHHHHHHHHHHHHCC-CHHHHhCCCCC
Confidence 568899999999999 77788777764
No 46
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=39.29 E-value=1.4e+02 Score=21.29 Aligned_cols=59 Identities=10% Similarity=-0.002 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHhCCCC--------CCccCCCCcc---c--cCCCChHHHHHHHHHHHHhcCCCCCCCCC
Q 033331 60 PETVQKVCEIVRRQLALPA--------ETELTSESKF---S--ALGGNSDELRRRIWDWCRRGKLPEHHNGP 118 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d--------~~~It~eS~F---~--DLGaDSLD~VEIVm~LEdeF~Ip~~~~~p 118 (121)
.++..++...+++++|+.. ..+-+|+|++ + .-|..-|+++++.-.||+-||++=+-..|
T Consensus 8 ~~~lr~~~~~l~~k~gv~~~~vFGS~aRgE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~t~ 79 (97)
T COG1669 8 KKILRKIKPELKEKYGVKRVAVFGSYARGEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLVTK 79 (97)
T ss_pred HHHHHHHHHHHHHHhCCceEEEeeeeecCCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeeecc
Confidence 3457888888998886622 3446667764 2 44789999999999999999997665544
No 47
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=36.44 E-value=32 Score=25.76 Aligned_cols=20 Identities=10% Similarity=-0.092 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhcCCCCCC
Q 033331 96 DELRRRIWDWCRRGKLPEHH 115 (121)
Q Consensus 96 LD~VEIVm~LEdeF~Ip~~~ 115 (121)
|.+.|++-.+|++|||....
T Consensus 18 lel~eLvk~~eekfgVsaaa 37 (124)
T COG0222 18 LELSELVKALEEKFGVTAAA 37 (124)
T ss_pred HHHHHHHHHHHHHhCCccch
Confidence 67899999999999997543
No 48
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=33.57 E-value=1.9 Score=27.35 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHhCCCC---------CCccCCCCccccCCCChHHHHHH
Q 033331 59 KPETVQKVCEIVRRQLALPA---------ETELTSESKFSALGGNSDELRRR 101 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d---------~~~It~eS~F~DLGaDSLD~VEI 101 (121)
+.+.+.+|.+.++++.+++. ...+.++.++.++|+..=|++|+
T Consensus 19 ~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv 70 (72)
T PF11976_consen 19 PTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDV 70 (72)
T ss_dssp TTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEE
T ss_pred CCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEE
Confidence 35578888888999999944 23478888888888877665543
No 49
>PLN00204 CP12 gene family protein; Provisional
Probab=30.33 E-value=96 Score=23.31 Aligned_cols=27 Identities=11% Similarity=-0.012 Sum_probs=18.1
Q ss_pred cceeeecCChHHHHHHHHHHHHHHhCC
Q 033331 50 NRFCVSCSAKPETVQKVCEIVRRQLAL 76 (121)
Q Consensus 50 ~r~~v~c~ak~et~ekV~~IV~~~l~l 76 (121)
.++++--++.+.+-++|.+-|++--.+
T Consensus 45 ~~~~~v~a~~~~L~e~Ie~aI~eArev 71 (126)
T PLN00204 45 MQVRPVRAAPEGISEKVEKSIKEAEET 71 (126)
T ss_pred eEEEeeecCCccHHHHHHHHHHHHHHH
Confidence 345554566666888888888776554
No 50
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=30.31 E-value=60 Score=22.52 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCcc
Q 033331 59 KPETVQKVCEIVRRQLALPAETEL 82 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~I 82 (121)
|.+..+.|++.+.+.+|+ +++.|
T Consensus 74 k~~l~~~i~~~l~~~lgi-~~~rv 96 (116)
T PTZ00397 74 NSSIAAAITKILASHLKV-KSERV 96 (116)
T ss_pred HHHHHHHHHHHHHHHhCc-CcccE
Confidence 568999999999999999 66554
No 51
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=28.83 E-value=4.5 Score=26.10 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc--------cCCCCccccCCCCh
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE--------LTSESKFSALGGNS 95 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~--------It~eS~F~DLGaDS 95 (121)
...++++.|++.|.+..++|.... +..+..+.++|+.-
T Consensus 16 ~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~ 61 (74)
T cd01793 16 TGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEE 61 (74)
T ss_pred CCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCC
Confidence 345799999999999999843222 45555555666643
No 52
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=28.25 E-value=35 Score=28.76 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCC--CccCCCCccccCCCC-hHHHHHHHHHHHHhcCCCCCCCCCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAE--TELTSESKFSALGGN-SDELRRRIWDWCRRGKLPEHHNGPRG 120 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~--~~It~eS~F~DLGaD-SLD~VEIVm~LEdeF~Ip~~~~~p~~ 120 (121)
|-||+=++..|=-+...- .. -.-.+.-.|.+|.-. =-|.-.|++.|+++|+++++ +.|+|
T Consensus 66 KvEt~lR~~~IpYE~~~~-~~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~~hf~~~~~-L~~e~ 128 (281)
T KOG4244|consen 66 KVETFLRAYDIPYEIVDC-SLKRRSRNGTLPFIELNGEHIADSDLIEDRLRKHFKIPDD-LSAEQ 128 (281)
T ss_pred HHHHHHHHhCCCceeccc-cceeeccCCCcceEEeCCeeccccHHHHHHHHHHcCCCCC-CCHHH
Confidence 556665555543322221 01 011233346777432 23456788899999999998 77764
No 53
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=28.13 E-value=44 Score=22.08 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=15.4
Q ss_pred CCCChHHHHHHHHHHHHhcCC
Q 033331 91 LGGNSDELRRRIWDWCRRGKL 111 (121)
Q Consensus 91 LGaDSLD~VEIVm~LEdeF~I 111 (121)
=|.+.|+.-++-+.||.+|||
T Consensus 48 R~s~tle~~Dv~~~Ler~~ni 68 (68)
T PF03847_consen 48 RKSSTLEVKDVQLHLERNWNI 68 (68)
T ss_dssp TT-SEE-HHHHHHHHHHHS--
T ss_pred cCCCCCCHHHHHHHHHhhcCC
Confidence 378889999999999999986
No 54
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=27.44 E-value=63 Score=19.62 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.|.++.++|.+.+.+.+|. +++.
T Consensus 15 ~K~~l~~~it~~~~~~lg~-~~~~ 37 (60)
T PF01361_consen 15 QKRELAEAITDAVVEVLGI-PPER 37 (60)
T ss_dssp HHHHHHHHHHHHHHHHHTS--GGG
T ss_pred HHHHHHHHHHHHHHHHhCc-CCCe
Confidence 4678999999999999999 5544
No 55
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=26.73 E-value=1.3e+02 Score=19.78 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=42.6
Q ss_pred ecCChHHHHHHHHHHHHHHhCCCCCC---ccCCCCccc-cCCCChHHHHHHHHHHHHhc
Q 033331 55 SCSAKPETVQKVCEIVRRQLALPAET---ELTSESKFS-ALGGNSDELRRRIWDWCRRG 109 (121)
Q Consensus 55 ~c~ak~et~ekV~~IV~~~l~l~d~~---~It~eS~F~-DLGaDSLD~VEIVm~LEdeF 109 (121)
...+++|+...|-+-|+++ ++-|+. .|..|..+. =+|-|.+.+.|+.-.|..+|
T Consensus 18 ~~~tr~ev~~~lw~YIk~n-~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 18 PEMTRTEIIKRLWEYIKEH-NLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred CcCcHHHHHHHHHHHHHHh-cccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 4578999999999999965 343433 388888887 67999999999998888765
No 56
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.57 E-value=49 Score=32.39 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=28.4
Q ss_pred CccCCCCccccCCCChHHHHHHHHHHHHhcCC
Q 033331 80 TELTSESKFSALGGNSDELRRRIWDWCRRGKL 111 (121)
Q Consensus 80 ~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~I 111 (121)
..+.++++|.+||.||+..|-++..|-.++.+
T Consensus 614 ~~~s~d~~fF~lGgdSi~av~~~~~lr~~~~v 645 (1032)
T KOG1178|consen 614 AIVSPDSSFFQLGGDSISAVRLSGLLRKKGYV 645 (1032)
T ss_pred cccCCCcchhhhcchhHHHHHHHHhhhhhhee
Confidence 35889999999999999999999999888755
No 57
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=25.52 E-value=83 Score=20.86 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.|.++.++|.+++.+.+|. +++.
T Consensus 17 ~K~~la~~vT~~~~~~lg~-~~~~ 39 (69)
T COG1942 17 QKAELAAEVTEVTVETLGK-DPSA 39 (69)
T ss_pred HHHHHHHHHHHHHHHHhCC-Cccc
Confidence 4789999999999999999 6554
No 58
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=24.82 E-value=51 Score=19.43 Aligned_cols=18 Identities=17% Similarity=0.254 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHhCC
Q 033331 59 KPETVQKVCEIVRRQLAL 76 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l 76 (121)
..++++.|++.|.+.+++
T Consensus 18 ~~~tv~~lk~~i~~~~~~ 35 (64)
T smart00213 18 PSDTVSELKEKIAELTGI 35 (64)
T ss_pred CCCcHHHHHHHHHHHHCC
Confidence 345899999999999998
No 59
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=24.64 E-value=78 Score=19.40 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=30.4
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCChHH
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGNSDE 97 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaDSLD 97 (121)
|.+.+. ..+++..|++.|.+..++ +++. +..+.++.++|+..-+
T Consensus 8 ~~~~v~-~~~tV~~lK~~i~~~~~~-~~~~~~L~~~G~~L~d~~tL~~~~i~~~~ 60 (69)
T PF00240_consen 8 FTLEVD-PDDTVADLKQKIAEETGI-PPEQQRLIYNGKELDDDKTLSDYGIKDGS 60 (69)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHHTS-TGGGEEEEETTEEESTTSBTGGGTTSTTE
T ss_pred EEEEEC-CCCCHHHhhhhccccccc-ccccceeeeeeecccCcCcHHHcCCCCCC
Confidence 444333 467899999999999999 4444 5555566677776544
No 60
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=24.14 E-value=42 Score=21.36 Aligned_cols=35 Identities=23% Similarity=0.423 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGG 93 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGa 93 (121)
..++++.|++.|.+..|++... .+..+.++.|+|+
T Consensus 19 ~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i 61 (74)
T cd01807 19 EKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSI 61 (74)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCC
Confidence 4679999999999999984432 2455555555555
No 61
>PRK00010 rplE 50S ribosomal protein L5; Validated
Probab=23.05 E-value=1.1e+02 Score=23.73 Aligned_cols=42 Identities=14% Similarity=0.214 Sum_probs=24.8
Q ss_pred cccccceeeecccccCCCccccc-ceeeecCC------hHHHHHHHHHHH
Q 033331 28 RTSNLKMAIGGWRKNRFPSLKTN-RFCVSCSA------KPETVQKVCEIV 70 (121)
Q Consensus 28 ~~~~~~~~s~~~~~~~~~s~~~~-r~~v~c~a------k~et~ekV~~IV 70 (121)
.|++.+++.. ..+++...+++. .--|.|.. ..+-++++..++
T Consensus 59 ~ITGQkP~~t-~aKksi~~fkiRkg~piG~kVTLRg~~my~FL~kli~~v 107 (179)
T PRK00010 59 LITGQKPVVT-KAKKSIAGFKLREGMPIGCKVTLRGERMYEFLDRLINIA 107 (179)
T ss_pred HHhCCceEEE-eccccccccCCCCCCEEEEEEEECcHHHHHHHHHHHHHh
Confidence 4566666554 456777777763 34466632 346666666665
No 62
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=22.83 E-value=73 Score=18.71 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=38.1
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCC-CCCccCCCC---c--cccCCCChHHHHHHHHHHHHhcC
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALP-AETELTSES---K--FSALGGNSDELRRRIWDWCRRGK 110 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~-d~~~It~eS---~--F~DLGaDSLD~VEIVm~LEdeF~ 110 (121)
++.|.|.-++-++.+|.+++.+. ++. ..-.+..+. . +...-.|.-+.-.++-.|++-+|
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~-~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADH-GINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHT-TEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 57888999999999999999964 440 111111111 1 22666777777777777776543
No 63
>PRK00194 hypothetical protein; Validated
Probab=20.97 E-value=2.2e+02 Score=18.42 Aligned_cols=60 Identities=10% Similarity=0.116 Sum_probs=38.1
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCCCCCccCCCC---cc----c-cCC---CChHHHHHHHHHHHHhcCCC
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALPAETELTSES---KF----S-ALG---GNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~d~~~It~eS---~F----~-DLG---aDSLD~VEIVm~LEdeF~Ip 112 (121)
.+.+.|.-++.++.+|.+++.++ |+ .=.++.-.. .| . ++. .|--++.+-+..+++++|++
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~-g~-nI~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~~ 75 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAEL-NV-NILDISQTIMDGYFTMIMLVDISESKKDFAELKEELEELGKELGVK 75 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc-CC-CEEehhhHhhCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCCE
Confidence 35788999999999999999975 44 211221111 22 2 443 22335557788899998864
No 64
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=20.96 E-value=73 Score=19.94 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHhCCC
Q 033331 59 KPETVQKVCEIVRRQLALP 77 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~ 77 (121)
..+++..|++.|.++.+++
T Consensus 17 ~~~tV~~lK~~i~~~~gi~ 35 (70)
T cd01798 17 PDTDIKQLKEVVAKRQGVP 35 (70)
T ss_pred CCChHHHHHHHHHHHHCCC
Confidence 5679999999999999983
No 65
>PF14000 Packaging_FI: DNA packaging protein FI
Probab=20.83 E-value=3.6e+02 Score=20.05 Aligned_cols=47 Identities=17% Similarity=0.353 Sum_probs=33.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcC-CCCCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGK-LPEHHN 116 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~-Ip~~~~ 116 (121)
+|+|.+.+|+++= .+||- ++ ++.+. -=|+-..|+++|+|.+ ..+..+
T Consensus 1 tKee~l~RL~eLa-~~LGR-E~-d~SGS---------aAeiaqRVAEwEEEl~~~~~~~~ 48 (125)
T PF14000_consen 1 TKEENLARLRELA-AQLGR-EP-DMSGS---------AAEIAQRVAEWEEELDDSSDGDI 48 (125)
T ss_pred ChHHHHHHHHHHH-HHhCc-CC-Ccccc---------HHHHHHHHHHHHHHHhcccCCcc
Confidence 5889999999964 48887 43 34333 3567889999999997 444333
No 66
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=20.74 E-value=38 Score=29.31 Aligned_cols=17 Identities=12% Similarity=-0.197 Sum_probs=13.4
Q ss_pred CChHHHHHHHHHHHHhcC
Q 033331 93 GNSDELRRRIWDWCRRGK 110 (121)
Q Consensus 93 aDSLD~VEIVm~LEdeF~ 110 (121)
+||||++ .||++++||+
T Consensus 38 vDSLdTL-~imgl~~ef~ 54 (452)
T PF01532_consen 38 VDSLDTL-YIMGLKDEFN 54 (452)
T ss_dssp HHHHHHH-HHHTHHHHHH
T ss_pred eeeccce-eecCCHHHHH
Confidence 5888887 5779999883
No 67
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=20.46 E-value=1.1e+02 Score=18.76 Aligned_cols=23 Identities=13% Similarity=0.257 Sum_probs=18.4
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.|..+.+.|.+.+.+.+++ +++.
T Consensus 16 qk~~l~~~it~~l~~~lg~-p~~~ 38 (64)
T PRK01964 16 KIKNLIREVTEAISATLDV-PKER 38 (64)
T ss_pred HHHHHHHHHHHHHHHHhCc-Chhh
Confidence 4677889999999999999 5544
Done!