Query 033331
Match_columns 121
No_of_seqs 180 out of 1156
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 21:02:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033331.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033331hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9f_A CALE8, meacp; transfera 99.6 1.2E-15 4.1E-20 108.3 7.0 55 58-113 11-66 (102)
2 2kci_A Putative acyl carrier p 99.5 4.1E-15 1.4E-19 101.5 5.2 52 61-113 2-54 (87)
3 1dv5_A APO-DCP, APO-D-alanyl c 99.5 3.3E-14 1.1E-18 93.5 7.2 61 58-119 1-64 (80)
4 3gzm_A Acyl carrier protein; h 99.5 5.2E-14 1.8E-18 91.9 6.0 55 58-113 2-57 (81)
5 3ejb_A Acyl carrier protein; p 99.5 9.6E-14 3.3E-18 95.0 6.1 56 57-113 18-74 (97)
6 4dxe_H ACP, acyl carrier prote 99.5 8.4E-14 2.9E-18 96.6 5.8 62 50-113 16-78 (101)
7 2ava_A ACP I, acyl carrier pro 99.4 1.5E-13 5E-18 89.3 6.2 55 58-113 1-56 (82)
8 2lki_A Putative uncharacterize 99.4 7.9E-14 2.7E-18 97.5 5.1 61 51-112 14-78 (105)
9 1f80_D Acyl carrier protein; t 99.4 1.9E-13 6.6E-18 88.3 5.9 56 57-113 3-59 (81)
10 2kjs_A Putative acyl carrier p 99.4 1.6E-13 5.6E-18 93.0 5.6 52 61-113 2-54 (87)
11 2kwl_A ACP, acyl carrier prote 99.4 2.1E-13 7.3E-18 89.1 6.0 56 57-113 5-61 (84)
12 2lol_A ACP, acyl carrier prote 99.4 2.9E-13 9.9E-18 87.5 6.4 56 57-113 2-58 (81)
13 2qnw_A Acyl carrier protein; m 99.4 2.6E-13 9E-18 88.5 6.0 56 57-113 3-59 (82)
14 2kw2_A Specialized acyl carrie 99.4 2.3E-13 7.8E-18 93.4 5.8 53 60-113 2-55 (101)
15 2cnr_A FAS, ACP, acyl carrier 99.4 8.6E-13 2.9E-17 85.1 7.2 56 57-113 3-59 (82)
16 1x3o_A Acyl carrier protein; s 99.4 7.5E-13 2.6E-17 84.8 6.8 56 57-113 1-57 (80)
17 1vku_A Acyl carrier protein; T 99.4 5.7E-13 2E-17 92.3 6.7 56 57-113 13-68 (100)
18 2l4b_A Acyl carrier protein; i 99.4 2E-13 6.9E-18 90.3 4.1 56 57-113 4-63 (88)
19 2dnw_A Acyl carrier protein; A 99.4 9.7E-13 3.3E-17 89.3 7.0 56 57-113 11-67 (99)
20 2lte_A Specialized acyl carrie 99.1 4.5E-14 1.6E-18 98.2 0.0 62 50-112 13-76 (103)
21 2jq4_A AGR_C_4658P, hypothetic 99.4 5E-13 1.7E-17 92.9 4.8 56 57-112 18-74 (105)
22 1af8_A Actinorhodin polyketide 99.4 2.9E-13 1E-17 88.8 3.4 54 58-112 2-59 (86)
23 1l0i_A Acyl carrier protein; a 99.3 1.4E-12 4.7E-17 83.7 5.6 53 60-113 2-55 (78)
24 2amw_A Hypothetical protein NE 99.3 1.1E-12 3.8E-17 86.0 5.3 57 61-118 2-64 (83)
25 1klp_A ACP, ACPM, meromycolate 99.3 3.1E-12 1.1E-16 89.2 7.0 56 57-113 3-59 (115)
26 3ce7_A Specific mitochodrial a 99.3 2.9E-12 9.9E-17 89.5 6.0 55 57-113 15-75 (107)
27 1or5_A Acyl carrier protein; A 99.3 2.4E-12 8.3E-17 83.8 3.5 53 60-113 3-58 (83)
28 2ehs_A ACP, acyl carrier prote 99.2 1.1E-11 3.7E-16 78.6 5.9 52 61-113 1-53 (77)
29 2cgq_A Acyl carrier protein AC 99.2 5.8E-12 2E-16 89.5 4.5 49 59-113 28-77 (113)
30 1nq4_A Oxytetracycline polyket 99.2 8.1E-12 2.8E-16 84.8 4.7 53 61-113 4-59 (95)
31 2l3v_A ACP, acyl carrier prote 99.2 1.7E-12 5.9E-17 83.3 1.1 53 60-113 3-56 (79)
32 1fh1_A NODF, nodulation protei 99.2 1.8E-12 6.2E-17 87.1 0.7 55 60-114 3-64 (92)
33 2cg5_B Fatty acid synthase; tr 99.2 3.4E-11 1.2E-15 83.0 5.4 50 64-113 9-58 (91)
34 2kr5_A PKS, aflatoxin biosynth 99.1 1.3E-10 4.3E-15 76.0 5.5 55 58-113 8-62 (89)
35 2afd_A Protein ASL1650; twiste 99.1 4.1E-10 1.4E-14 72.6 6.8 56 57-113 10-65 (88)
36 2liu_A CURA; holo state, trans 99.0 6.4E-10 2.2E-14 73.4 5.4 56 57-113 17-72 (99)
37 2l22_A Mupirocin didomain acyl 98.9 1.6E-09 5.4E-14 81.4 5.9 56 57-113 22-77 (212)
38 2ju1_A Erythronolide synthase; 98.9 1.9E-09 6.5E-14 71.0 4.8 55 59-113 18-72 (95)
39 1dny_A Non-ribosomal peptide s 98.8 1.2E-08 4.1E-13 68.2 6.8 53 57-112 10-62 (91)
40 4i4d_A Peptide synthetase NRPS 98.7 2.4E-08 8.2E-13 66.6 6.8 52 59-113 14-65 (93)
41 2l22_A Mupirocin didomain acyl 98.7 3.6E-08 1.2E-12 73.9 7.0 54 59-113 128-181 (212)
42 3tej_A Enterobactin synthase c 98.2 2.5E-06 8.6E-11 66.4 6.2 54 57-113 7-60 (329)
43 2cq8_A 10-formyltetrahydrofola 97.8 2.2E-05 7.4E-10 55.7 4.4 52 59-113 23-76 (110)
44 2jgp_A Tyrocidine synthetase 3 97.7 6.5E-05 2.2E-09 61.2 6.4 53 57-112 6-58 (520)
45 2fq1_A Isochorismatase; ENTB, 97.2 0.00028 9.7E-09 55.2 4.1 48 63-113 217-264 (287)
46 2vsq_A Surfactin synthetase su 96.8 0.00089 3E-08 61.5 4.7 53 57-112 968-1020(1304)
47 4f6l_B AUSA reductase domain p 96.6 0.00031 1.1E-08 57.9 0.0 52 57-112 41-92 (508)
48 2vz8_A Fatty acid synthase; tr 95.8 0.0016 5.5E-08 64.5 0.0 51 62-112 2124-2174(2512)
49 4dg8_A PA1221; ANL superfamily 95.7 0.0018 6.1E-08 55.2 0.0 52 58-112 521-573 (620)
50 3rg2_A Enterobactin synthase c 95.1 0.017 5.7E-07 48.6 3.9 48 61-111 545-592 (617)
51 1dd4_C 50S ribosomal protein L 90.8 0.21 7.2E-06 29.5 3.0 22 94-115 14-35 (40)
52 3zen_D Fatty acid synthase; tr 84.3 0.19 6.6E-06 51.3 0.0 52 62-114 1795-1849(3089)
53 1zav_U 50S ribosomal protein L 82.8 0.88 3E-05 25.2 2.3 16 95-110 15-30 (30)
54 2ftc_E L12MT, MRP-L12, 39S rib 64.4 4.4 0.00015 29.5 2.7 23 96-118 16-38 (137)
55 2zjq_5 50S ribosomal protein L 60.6 5.8 0.0002 28.4 2.7 21 95-115 17-37 (122)
56 2j01_L 50S ribosomal protein L 59.5 6.1 0.00021 28.4 2.7 21 95-115 17-37 (125)
57 3b1l_X E3 ubiquitin-protein li 50.7 4.6 0.00016 24.4 0.0 46 59-104 19-72 (76)
58 1dd3_A 50S ribosomal protein L 44.7 7.3 0.00025 28.2 1.0 19 95-113 15-33 (128)
59 3u5e_m 60S ribosomal protein L 44.1 4.8 0.00016 27.6 0.0 48 59-106 19-74 (128)
60 2io0_B Small ubiquitin-related 43.3 0.84 2.9E-05 30.4 -3.9 46 60-105 25-78 (91)
61 3u5c_f 40S ribosomal protein S 40.7 5.8 0.0002 28.6 0.0 49 59-107 19-75 (152)
62 3sgf_J 50S ribosomal protein L 38.3 4.5 0.00015 29.0 -0.9 21 95-115 17-37 (121)
63 3n3k_B Ubiquitin; hydrolase, p 37.6 40 0.0014 20.3 3.6 45 52-98 16-69 (85)
64 1v32_A AT5G08430, hypothetical 37.3 27 0.00092 23.8 3.0 56 56-112 34-93 (101)
65 4ajy_B Transcription elongatio 36.8 19 0.00065 25.3 2.2 45 51-95 11-64 (118)
66 2opa_A Probable tautomerase YW 35.6 34 0.0012 19.5 2.9 24 57-81 14-37 (61)
67 3m20_A 4-oxalocrotonate tautom 35.0 42 0.0014 19.7 3.3 23 58-81 14-36 (62)
68 1otf_A 4-oxalocrotonate tautom 34.7 35 0.0012 19.4 2.9 24 57-81 14-37 (62)
69 1sif_A Ubiquitin; hydrophobic 34.5 39 0.0013 21.2 3.3 43 51-95 21-72 (88)
70 3mtn_B UBA80, ubcep1, ubiquiti 34.0 38 0.0013 20.3 3.1 43 52-95 16-66 (85)
71 4fbj_B NEDD8; effector-HOST ta 33.7 46 0.0016 20.8 3.5 47 51-98 12-66 (88)
72 3abf_A 4-oxalocrotonate tautom 32.5 36 0.0012 19.5 2.7 23 58-81 16-38 (64)
73 3plu_A Ubiquitin-like modifier 32.3 37 0.0013 22.8 3.0 29 51-81 33-61 (93)
74 1uhr_A SWI/SNF related, matrix 32.2 38 0.0013 22.4 3.1 56 57-113 27-86 (93)
75 3a9j_A Ubiquitin; protein comp 31.0 50 0.0017 19.2 3.2 41 52-94 13-62 (76)
76 2io1_B Small ubiquitin-related 31.0 4.2 0.00015 26.9 -1.9 45 59-103 26-78 (94)
77 3m21_A Probable tautomerase HP 29.9 46 0.0016 19.7 2.9 23 58-81 18-40 (67)
78 4eew_A Large proline-rich prot 28.6 32 0.0011 21.2 2.1 41 52-93 30-78 (88)
79 3ry0_A Putative tautomerase; o 27.7 54 0.0018 19.2 2.9 23 58-81 15-37 (65)
80 2dzi_A Ubiquitin-like protein 27.5 54 0.0018 19.5 3.0 19 59-77 26-44 (81)
81 3dbh_I NEDD8; cell cycle, acti 27.4 58 0.002 19.7 3.1 42 52-95 25-75 (88)
82 2uyz_B Small ubiquitin-related 27.2 2.6 8.8E-05 25.9 -3.4 39 59-98 22-69 (79)
83 4dwf_A HLA-B-associated transc 26.8 42 0.0014 20.7 2.4 40 52-93 18-66 (90)
84 1v31_A Hypothetical protein RA 26.5 30 0.001 22.9 1.7 56 57-113 27-86 (93)
85 2pjh_A Protein NPL4, nuclear p 26.2 67 0.0023 20.3 3.3 26 51-77 15-40 (80)
86 1ndd_A NEDD8, protein (ubiquit 26.2 46 0.0016 19.4 2.4 41 52-94 13-62 (76)
87 3mb2_A 4-oxalocrotonate tautom 26.0 53 0.0018 19.8 2.7 23 58-81 16-38 (72)
88 2kd0_A LRR repeats and ubiquit 25.9 66 0.0023 20.1 3.3 42 52-94 24-73 (85)
89 4hcn_B Polyubiquitin, ubiquiti 25.5 69 0.0024 20.4 3.4 43 52-95 35-85 (98)
90 1fjm_A Protein serine/threonin 24.8 1.6E+02 0.0056 23.4 6.1 46 63-109 69-114 (330)
91 3k9o_B Ubiquitin, UBB+1; E2-25 24.8 73 0.0025 19.8 3.3 48 52-101 14-70 (96)
92 2x4k_A 4-oxalocrotonate tautom 24.8 68 0.0023 17.9 2.9 20 58-77 18-37 (63)
93 1wz0_A Ubiquitin-like protein 24.5 11 0.00036 25.6 -0.9 44 59-102 43-94 (104)
94 1gyx_A YDCE, B1461, hypothetic 24.0 65 0.0022 19.6 2.9 39 57-98 15-53 (76)
95 1uh6_A Ubiquitin-like 5; beta- 23.8 7.8 0.00027 26.4 -1.7 45 51-97 40-93 (100)
96 3hi2_B Motility quorum-sensing 23.7 9.9 0.00034 26.4 -1.2 41 63-108 13-55 (101)
97 3phx_B Ubiquitin-like protein 23.1 55 0.0019 19.6 2.4 43 52-95 17-67 (79)
98 3v6c_B Ubiquitin; structural g 23.0 50 0.0017 20.6 2.2 43 52-95 30-80 (91)
99 1wm3_A Ubiquitin-like protein 22.9 17 0.00058 22.4 -0.1 42 59-100 20-69 (72)
100 3ej9_A Alpha-subunit of trans- 22.9 71 0.0024 19.6 2.9 24 57-81 15-38 (76)
101 2bwf_A Ubiquitin-like protein 22.9 57 0.0019 19.2 2.4 25 52-77 16-40 (77)
102 1h3o_B Transcription initiatio 22.8 42 0.0014 21.8 1.9 22 91-112 54-75 (76)
103 3fwu_A Macrophage migration in 22.5 60 0.0021 22.3 2.7 24 57-81 92-115 (133)
104 2faz_A Ubiquitin-like containi 22.3 66 0.0023 19.1 2.6 35 59-94 23-66 (78)
105 4dh4_A MIF; trimer, isomerase; 21.6 67 0.0023 21.0 2.7 23 58-81 72-94 (114)
106 2d07_B Ubiquitin-like protein 21.3 10 0.00034 24.9 -1.5 48 51-101 31-86 (93)
107 1wju_A NEDD8 ultimate buster-1 20.9 1E+02 0.0036 20.6 3.6 27 51-78 31-57 (100)
108 2uv8_A Fatty acid synthase sub 20.8 1.1E+02 0.0039 30.4 5.1 52 61-113 146-199 (1887)
109 2xcz_A Possible ATLS1-like lig 20.3 75 0.0026 20.6 2.7 24 57-81 71-94 (115)
110 3fwt_A Macrophage migration in 20.2 72 0.0025 21.9 2.7 23 58-81 93-115 (133)
No 1
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=99.61 E-value=1.2e-15 Score=108.30 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+-.+++++|++||.+++++ ++++|+++++|. |||+||||+|||||.+|++||++-
T Consensus 11 ~~~~I~~~V~~ilaE~lev-~~e~Vtpda~l~dDLglDSLd~VeLVm~lE~~fGi~i 66 (102)
T 2l9f_A 11 AATGALELVRHLVAERAEL-PVEVLRDDSRFLDDLHMSSITVGQLVNEAARAMGLSA 66 (102)
T ss_dssp SSCCHHHHHHHHHHHHTTS-CSSSCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHCC-CHHHcCCCcchhhhcCCcHHHHHHHHHHHHHHhCCCC
Confidence 4457999999999999999 999999999998 999999999999999999999963
No 2
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2lml_A* 2kwm_A*
Probab=99.55 E-value=4.1e-15 Score=101.52 Aligned_cols=52 Identities=17% Similarity=0.004 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++++|++|+++++++ ++.+|+++++|. |||+|||++||+|++||++|||.-
T Consensus 2 ~i~ekv~~il~e~l~~-d~~~i~~d~~l~~dlg~DSL~~veli~~lE~eF~I~i 54 (87)
T 2kci_A 2 PTLDALTPIFRQVFDD-DSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKF 54 (87)
T ss_dssp CSHHHHHHHHHHHTTC-SCCCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHhCC-CHHHCCCCCCcccccCCChHHHHHHHHHHHHHHCCcc
Confidence 5789999999999999 888999999998 799999999999999999999853
No 3
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=99.51 E-value=3.3e-14 Score=93.50 Aligned_cols=61 Identities=10% Similarity=0.035 Sum_probs=53.7
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCC-CChHHHHHHHHHHHHhcCC--CCCCCCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALG-GNSDELRRRIWDWCRRGKL--PEHHNGPR 119 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLG-aDSLD~VEIVm~LEdeF~I--p~~~~~p~ 119 (121)
+++++.++|+++++++++. ++.+++++++|.++| +|||++||+++.||++||| |+..+.|+
T Consensus 1 ~~~~i~~~i~~il~~~~~~-~~~~i~~d~~l~~~g~lDSl~~velv~~lE~~fgi~i~~~~~~~~ 64 (80)
T 1dv5_A 1 ADEAIKNGVLDILADLTGS-DDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRK 64 (80)
T ss_dssp CCHHHHHHHHHHHHHHHTS-SSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTT
T ss_pred CHHHHHHHHHHHHHHHhCC-CcccCCCCcchhhccCcChHHHHHHHHHHHHHhCCcCCHHHcCHH
Confidence 4789999999999999998 778899999999888 9999999999999999988 55555443
No 4
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=99.48 E-value=5.2e-14 Score=91.85 Aligned_cols=55 Identities=22% Similarity=0.322 Sum_probs=51.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++++.++|++++++.+++ ++++|+++++|. |||+|||+++|+++.||++|||+-
T Consensus 2 ~~~~i~~~l~~ii~~~l~~-~~~~i~~d~~l~~dlg~DSl~~vel~~~le~~fgi~i 57 (81)
T 3gzm_A 2 SLKSTFDDIKKIISKQLSV-EEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTI 57 (81)
T ss_dssp CHHHHHHHHHHHHHHHHTC-CGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHHhCc-CHHHCCCCCcchhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 5789999999999999999 888999999995 999999999999999999999964
No 5
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=99.45 E-value=9.6e-14 Score=95.02 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=52.8
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+++++.++|++|+.+++++ ++++|+++++|. |||+|||+++||++.||++|||+.
T Consensus 18 ~t~~~i~~~l~~iia~~l~~-~~~~i~~d~~l~~dLGlDSL~~vel~~~lE~~fgi~i 74 (97)
T 3ejb_A 18 SHMSTIEERVKKIIGEQLGV-KQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEI 74 (97)
T ss_dssp CCCCCHHHHHHHHHHHHSCC-CTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHCc-CHHHCCCCCCchhhcCCCHHHHHHHHHHHHHHHCCCC
Confidence 56889999999999999999 888999999995 999999999999999999999964
No 6
>4dxe_H ACP, acyl carrier protein; acyl-carrier-protein synthase, type II acid synthesis pathway; 2.51A {Staphylococcus aureus}
Probab=99.45 E-value=8.4e-14 Score=96.64 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=51.2
Q ss_pred cceeeecCChHHHHHHHHHHHHHHhCCCCCCccCCCCcc-ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 50 NRFCVSCSAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 50 ~r~~v~c~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F-~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.|++. -+.+.+++++|++||++++++ ++++|+++++| .|||+|||+++||++.||++|||+-
T Consensus 16 ~~~~~-~m~~mei~~~l~~iiae~l~~-~~~~I~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i 78 (101)
T 4dxe_H 16 ENLYF-QSNAMENFDKVKDIIVDRLGV-DADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEI 78 (101)
T ss_dssp ---------CTTHHHHHHHHHHHTTCC-CGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHH-hcCHHHHHHHHHHHHHHHHCc-ChhhCCCCCcchhhcCCCcHHHHHHHHHHHHHHCCCC
Confidence 34554 345678999999999999999 88899999999 5999999999999999999999964
No 7
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=99.44 E-value=1.5e-13 Score=89.32 Aligned_cols=55 Identities=33% Similarity=0.424 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCC-ccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAET-ELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~-~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++++.++|++++.+.+++ +++ +|+++++|.|||+|||+++|+++.||++|||+-
T Consensus 1 ~~~~i~~~l~~i~~~~l~~-~~~~~i~~~~~l~dlG~DSl~~vel~~~le~~fgi~i 56 (82)
T 2ava_A 1 AKKETIDKVSDIVKEKLAL-GADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINV 56 (82)
T ss_dssp CCHHHHHHHHHHHHHHTTC-SSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCC
T ss_pred ChHHHHHHHHHHHHHHhCC-CcccccCCCCchhhcCCCHHHHHHHHHHHHHHHCCcc
Confidence 4789999999999999999 665 899999999999999999999999999999853
No 8
>2lki_A Putative uncharacterized protein; helical bundle, acyl carrier, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, PSI-biology; HET: PNS; NMR {Nitrosomonas europaea}
Probab=99.44 E-value=7.9e-14 Score=97.51 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=49.2
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCCC--CCccCCCCccc-cCCC-ChHHHHHHHHHHHHhcCCC
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALPA--ETELTSESKFS-ALGG-NSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~d--~~~It~eS~F~-DLGa-DSLD~VEIVm~LEdeF~Ip 112 (121)
|=++.|.++.+++++|+++|.+++++ + +++|+++++|. |||+ |||++|||++.||++|||+
T Consensus 14 ~~~~~~~~~m~i~~~i~~il~e~l~~-~~~~~~i~~d~~L~~dLGl~DSL~~veLi~~lE~~FgI~ 78 (105)
T 2lki_A 14 RENLYFQGHMQHLEAVRNILGDVLNL-GERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFS 78 (105)
T ss_dssp ---------CCTHHHHHHHHHHHTTC-TTGGGTCCTTSBCBTTBTTCCHHHHHHHHHHHHHHHTSC
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhCC-CcccccCCCCCchhhhcCcccHHHHHHHHHHHHHHhCCC
Confidence 55667788889999999999999999 6 67899999998 8999 9999999999999999984
No 9
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=99.43 E-value=1.9e-13 Score=88.34 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=51.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCcc-ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F-~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
++++++.++|++++++.+++ ++++|+++++| .|||+|||+++|+++.||++|||+-
T Consensus 3 m~~~~i~~~l~~~l~~~l~~-~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i 59 (81)
T 1f80_D 3 LGSADTLERVTKIIVDRLGV-DEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEI 59 (81)
T ss_dssp --CCHHHHHHHHHHHHHSSC-CSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHCC-CHHhCCCccchHHHcCCcHHHHHHHHHHHHHHhCCcc
Confidence 45789999999999999999 88899999999 5999999999999999999999864
No 10
>2kjs_A Putative acyl carrier protein; alpha, ACP, PNS, structural genomics, PSI-2, protein structure initiative; HET: PNS; NMR {Geobacter metallireducens gs-15} PDB: 2lml_A* 2kwm_A*
Probab=99.43 E-value=1.6e-13 Score=93.03 Aligned_cols=52 Identities=17% Similarity=0.004 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 61 ETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.|+++|++|++++|++ ++.+|+++++|. +||+|||+.+||++.||++|||+.
T Consensus 2 ~tle~l~~I~~e~l~~-d~~~i~~~~~~~d~lg~DSL~~veli~~ie~~fgi~i 54 (87)
T 2kjs_A 2 PTLDALTPIFRQVFDD-DSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKF 54 (87)
T ss_dssp CSHHHHHHHHHHHHTC-SSCCCCTTCCSTTCSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHhCC-CccccCCCCCcccCCCCChHHHHHHHHHHHHHhCcee
Confidence 4789999999999999 999999999998 699999999999999999999864
No 11
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=99.42 E-value=2.1e-13 Score=89.07 Aligned_cols=56 Identities=23% Similarity=0.241 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCcc-ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F-~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
++++++.++|++++.+.+++ ++++|+++++| .|||+|||+++|+++.||++|||+-
T Consensus 5 m~~~~i~~~l~~~i~~~l~~-~~~~i~~~~~l~~dlG~DSl~~vel~~~le~~fgi~i 61 (84)
T 2kwl_A 5 MDNDEIFSKVRSIISEQLDK-KEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKI 61 (84)
T ss_dssp STHHHHHHHHHHHHHHHHCC-CGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCT
T ss_pred CCHHHHHHHHHHHHHHHhCC-CcccCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCc
Confidence 46789999999999999999 88899999999 5999999999999999999999854
No 12
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=99.42 E-value=2.9e-13 Score=87.52 Aligned_cols=56 Identities=21% Similarity=0.181 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
++++++.++|++++++.+++ ++++|+++++|. |||+|||+.+|++..||++|||+-
T Consensus 2 m~~~~i~~~l~~ii~~~l~~-~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i 58 (81)
T 2lol_A 2 STTDKIEQKVIEMVAEKLNK-DKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDI 58 (81)
T ss_dssp CSHHHHHHHHHHHHHHHSCC-CTTTCCTTCCHHHHTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHHCC-ChhhCCCCCcHHHhcCCcHHHHHHHHHHHHHHHCCCC
Confidence 35789999999999999999 788999999995 999999999999999999999853
No 13
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=99.42 E-value=2.6e-13 Score=88.47 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCcc-ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F-~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+.++++.++|++++.+.+++ ++++|+++++| .|||+|||+++|+++.||++|||+-
T Consensus 3 ~~~~~i~~~l~~ii~~~l~~-~~~~i~~d~~l~~dlG~DSl~~vel~~~le~~fgi~i 59 (82)
T 2qnw_A 3 SDDRPLLERVKDVVADQLGV-DRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSI 59 (82)
T ss_dssp CCSHHHHHHHHHHHHHHHCC-CGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CcHHHHHHHHHHHHHHHHCC-CHhhCCCccchhhccCCcHHHHHHHHHHHHHHHCCcC
Confidence 35788999999999999999 88899999999 5999999999999999999999864
No 14
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 2ll8_A* 2lpk_A 3lmo_A
Probab=99.41 E-value=2.3e-13 Score=93.42 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.++.++|+++|++++++ ++++|+++++|. |||+|||++|||++.||++|||+-
T Consensus 2 ~~i~~~v~~ii~~~l~~-~~~~i~~d~~l~~dLGlDSL~~veLi~~lE~~fgi~i 55 (101)
T 2kw2_A 2 TSTFDRVATIIAETCDI-PRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKL 55 (101)
T ss_dssp CCHHHHHHHHHHHHHCC-CGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCC
T ss_pred hHHHHHHHHHHHHHhCC-CHhhCCCCcchHHhcCCCHHHHHHHHHHHHHHHCCcc
Confidence 36899999999999999 888999999995 999999999999999999999964
No 15
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=99.39 E-value=8.6e-13 Score=85.05 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=51.8
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+.++++.++|++++++.+++ ++++|+++++|. |||+|||+.+|++..||++|||+-
T Consensus 3 m~~~~i~~~l~~~i~~~l~~-~~~~i~~~~~l~~dlG~DSl~~~~l~~~le~~fgi~i 59 (82)
T 2cnr_A 3 ATQEEIVAGLAEIVNEIAGI-PVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKI 59 (82)
T ss_dssp CCHHHHHHHHHHHHHHHSCC-CTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCC
T ss_pred CCHHHHHHHHHHHHHHHhCC-CHHHCCCCcchhhccCCChHHHHHHHHHHHHHhCCCC
Confidence 46789999999999999999 788999999995 999999999999999999999853
No 16
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=99.39 E-value=7.5e-13 Score=84.76 Aligned_cols=56 Identities=21% Similarity=0.248 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCcc-ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF-SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F-~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
++++++.++|++++++.+++ ++++|+++++| .|||+|||+.+|++..||++|||+-
T Consensus 1 M~~~~i~~~l~~~i~~~l~~-~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i 57 (80)
T 1x3o_A 1 MTEQEIFEKVKAVIADKLQV-EPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEI 57 (80)
T ss_dssp CCHHHHHHHHHHHHHHHHTC-CGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCC
T ss_pred CCHHHHHHHHHHHHHHHhCC-CHHHCCCcCcHHhhcCccHHHHHHHHHHHHHHHCCCc
Confidence 35789999999999999999 78899999999 6999999999999999999999863
No 17
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=99.39 E-value=5.7e-13 Score=92.26 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+-++++.++|+++|.+.+++ ++++|+++++|.|||+|||+.|||++.||++|||+-
T Consensus 13 ~~~~~i~~~l~~ila~~l~v-~~~~I~~d~~L~dLGlDSL~~veL~~~LE~~fgi~i 68 (100)
T 1vku_A 13 MERKKLIAKFVEIASEKMGK-DLETVDEENTFKELGFDSIDVIDLVMFFEDEFALRI 68 (100)
T ss_dssp THHHHHHHHHHHHHHHTTCC-CCCSCCTTSBTTTTTCCHHHHHHHHHHHHHHHTCCC
T ss_pred ccHHHHHHHHHHHHHHHHCC-CHHHCCCCCCHHHcCCchHHHHHHHHHHHHHHCCCC
Confidence 45789999999999999999 788999999999999999999999999999999964
No 18
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=99.39 E-value=2e-13 Score=90.26 Aligned_cols=56 Identities=18% Similarity=0.074 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHHh---CCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQL---ALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l---~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
++++++.++|+++|.+.+ ++ ++++|+++++|. |||+|||+++|+++.||++|||+-
T Consensus 4 m~~~~i~~~v~~~i~~~l~~~~~-~~~~i~~d~~l~~dlglDSl~~vel~~~lE~~fgi~i 63 (88)
T 2l4b_A 4 MVSEEIKAQVMESVIGCLKLNDE-QKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEI 63 (88)
T ss_dssp SSCHHHHHHHHHHHHHHHTCCHH-HHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCCC-CHhhCCCCCchhhccCCcHHHHHHHHHHHHHHHCCCc
Confidence 467899999999999999 77 678899999995 999999999999999999999954
No 19
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=9.7e-13 Score=89.33 Aligned_cols=56 Identities=14% Similarity=0.042 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+++++.++|++++.+.+++ ++++|+++++|. |||+|||+++||++.||++|||+-
T Consensus 11 m~~~~i~~~l~~~l~~~l~~-~~~~i~~d~~l~~dlG~DSL~~vel~~~le~~fgi~i 67 (99)
T 2dnw_A 11 LTLEGIQDRVLYVLKLYDKI-DPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEI 67 (99)
T ss_dssp CCHHHHHHHHHHHHHHCTTS-CTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHhCC-CHhhCCCCCchhhhcCCCHHHHHHHHHHHHHHHCCCC
Confidence 56899999999999999999 888999999995 999999999999999999999864
No 20
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=99.07 E-value=4.5e-14 Score=98.16 Aligned_cols=62 Identities=8% Similarity=0.073 Sum_probs=56.7
Q ss_pred cceeeecCCh--HHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 50 NRFCVSCSAK--PETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 50 ~r~~v~c~ak--~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
.|+.+.|+++ .|+.++|+++|.+.+++ ++++|+++++|.|||+|||+++||++.||++|||+
T Consensus 13 ~~~~~~~~~~M~~ei~~~l~~ila~~l~i-~~~~I~~d~~l~dLGlDSL~~veL~~~lE~~fgi~ 76 (103)
T 2lte_A 13 GRENLYFQGHMPNDMEDHLLTVLSVASGV-PKEEISRDSRMEDLAFDSLVVSELSLKLRKEFGVT 76 (103)
Confidence 5778878874 35999999999999999 78899999999999999999999999999999984
No 21
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=99.36 E-value=5e-13 Score=92.87 Aligned_cols=56 Identities=14% Similarity=0.057 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHHHHHhCCC-CCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALP-AETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~-d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
..++++.++|++|+.+.+++. +.++|+++++|.|||+|||++|||++.||++|||+
T Consensus 18 ~~~~~i~~~i~~il~~~l~~~v~~~~i~~d~~l~dlGlDSL~~veLv~~lE~~fgI~ 74 (105)
T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIE 74 (105)
T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGGGGTCCHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHhccCCCcccCCCCCCHhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 567889999999999987651 47889999999999999999999999999999984
No 22
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=99.36 E-value=2.9e-13 Score=88.77 Aligned_cols=54 Identities=13% Similarity=0.000 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCC----ccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAET----ELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~----~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
+++++.++|++++.+++++ ++. +|+++++|.|||+|||+++|+++.||++|||+
T Consensus 2 ~~~~~~~~l~~il~~~l~~-~~~~~~~~i~~~~~l~dlG~DSL~~vel~~~le~~fgi~ 59 (86)
T 1af8_A 2 ATLLTTDDLRRALVECAGE-TDGTDLSGDFLDLRFEDIGYDSLALMETAARLESRYGVS 59 (86)
T ss_dssp CCSSCHHHHHHHHHTTCCC-CSCCCTTTCSSTTSTTTTTCCTTTHHHHHHHHTTTTCSC
T ss_pred chHHHHHHHHHHHHHHhCC-CcccccccCCCCCChhhcCCCHHHHHHHHHHHHHHHCCC
Confidence 3466899999999999999 555 78999999999999999999999999999984
No 23
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=99.34 E-value=1.4e-12 Score=83.74 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++.++|++++.+.+++ ++++|+++++|. |||+|||+.+|++..||++|||+-
T Consensus 2 ~~i~~~l~~~~~~~l~~-~~~~i~~~~~l~~dlG~DSl~~~el~~~le~~fgi~i 55 (78)
T 1l0i_A 2 STIEERVKKIIGEQLGV-KQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEI 55 (78)
T ss_dssp CCHHHHHHHHHHHHHTC-CGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHhCC-CHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHhCCCC
Confidence 46889999999999999 888999999995 999999999999999999999864
No 24
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.34 E-value=1.1e-12 Score=85.98 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhCCCC--CCccCCCCccc-cCCC-ChHHHHHHHHHHHHhcCC--CCCCCCC
Q 033331 61 ETVQKVCEIVRRQLALPA--ETELTSESKFS-ALGG-NSDELRRRIWDWCRRGKL--PEHHNGP 118 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d--~~~It~eS~F~-DLGa-DSLD~VEIVm~LEdeF~I--p~~~~~p 118 (121)
++.++|++++.+++++ + +++|+++++|. |||+ |||+++|+++.||++||| |+..+++
T Consensus 2 ~i~~~l~~il~~~l~~-~~~~~~i~~d~~l~~dlg~~DSl~~~elv~~lE~~fgi~i~~~~l~~ 64 (83)
T 2amw_A 2 QHLEAVRNILGDVLNL-GERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISA 64 (83)
T ss_dssp CTHHHHHHHHHHHTTC-GGGGGSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCG
T ss_pred cHHHHHHHHHHHHhCC-CCccccCCCcchhhhccCccCHHHHHHHHHHHHHHhCCeeCHHhhhH
Confidence 4789999999999999 6 77899999998 8999 999999999999999988 4444433
No 25
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=99.32 E-value=3.1e-12 Score=89.22 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+.++++.++|++++.+.+++ ++++|+++++|. |||+|||+++|+++.||++|||+-
T Consensus 3 m~~~~i~~~l~~il~~~l~~-~~~~i~~d~~l~~dlG~DSL~~vel~~~lE~~fgi~i 59 (115)
T 1klp_A 3 VTQEEIIAGIAEIIEEVTGI-EPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKI 59 (115)
T ss_dssp CCHHHHHHHHHHHHHHHTCC-CTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHHHHhCc-CHHhCCCCCchhhccCCCHHHHHHHHHHHHHHHCCCC
Confidence 46789999999999999999 788999999995 999999999999999999999853
No 26
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=99.30 E-value=2.9e-12 Score=89.51 Aligned_cols=55 Identities=9% Similarity=-0.008 Sum_probs=50.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCcc------ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKF------SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F------~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+++++.++|+++|++.++ ++.+|+++++| .|||+|||+++||++.||++|||+-
T Consensus 15 ~~~~~i~~~i~~il~e~l~--~~~~i~~d~~l~~~~~~~dLglDSL~~veli~~lE~~fgi~i 75 (107)
T 3ce7_A 15 TDINAVTNYIVGMCQKFLQ--KGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTV 75 (107)
T ss_dssp TCHHHHHHHHHHHHHTTBC--TTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHhC--CccccCCCCcccccCcccccCCCHHHHHHHHHHHHHHHCCCC
Confidence 4678999999999999998 67799999999 5999999999999999999999954
No 27
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=99.26 E-value=2.4e-12 Score=83.82 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCC-ccC--CCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAET-ELT--SESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~-~It--~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++.++|++++++.+++ ++. +|+ ++++|.|||+|||+.+|++..||++|||+-
T Consensus 3 ~~~~~~l~~~l~~~l~~-~~~~~i~~~~~~~~~dlG~DSL~~vel~~~le~~fgi~i 58 (83)
T 1or5_A 3 ALTVDDLKKLLAETAGE-DDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIAL 58 (83)
T ss_dssp CSCHHHHHHHHHHHSCC-CSSCCGGGCSSSCHHHHSCCHHHHHHHHHHHHTTSCCCC
T ss_pred hHHHHHHHHHHHHHhCC-CcccccCCCCCCcHHHhCCCHHHHHHHHHHHHHHHCCcc
Confidence 45789999999999999 655 899 999999999999999999999999999854
No 28
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national proje protein structural and functional analyses; 1.30A {Aquifex aeolicus} PDB: 2eht_A
Probab=99.25 E-value=1.1e-11 Score=78.61 Aligned_cols=52 Identities=25% Similarity=0.347 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCCCCcc-ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 61 ETVQKVCEIVRRQLALPAETELTSESKF-SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d~~~It~eS~F-~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
++.++|++++.+.+++ ++++++++++| .|||+|||+.++++..||++||++-
T Consensus 1 ~i~~~l~~~~~~~l~~-~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~~gi~i 53 (77)
T 2ehs_A 1 SLEERVKEIIAEQLGV-EKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEI 53 (77)
T ss_dssp CHHHHHHHHHHHHHCC-CGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHhCC-ChhhCCCccchhhccCCCHHHHHHHHHHHHHHhCCcc
Confidence 4788999999999999 78899999999 6999999999999999999999863
No 29
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=99.23 E-value=5.8e-12 Score=89.54 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAETELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++++++|++||.++++ |+++++|. |||+||||+|||++.||++|||+-
T Consensus 28 ~~ei~~~v~~il~e~l~------I~~d~~l~~dLGlDSLd~veLi~~LEe~FgI~I 77 (113)
T 2cgq_A 28 EEAINATIQRILRTDRG------ITANQVLVDDLGFDSLKLFQLITELEDEFDIAI 77 (113)
T ss_dssp HHHHHHHHHHHHTCCSC------CCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHhC------CCCCCchhhhcCCCHHHHHHHHHHHHHHhCCCc
Confidence 78899999999998876 89999995 999999999999999999999854
No 30
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=99.23 E-value=8.1e-12 Score=84.77 Aligned_cols=53 Identities=17% Similarity=0.061 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHhCCCC---CCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 61 ETVQKVCEIVRRQLALPA---ETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d---~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.++++|+++|.+++++.. +++|+++++|.|||+|||+.+||++.||++|||+.
T Consensus 4 ~t~~~l~~ii~~~l~~~~~~~~~~i~~d~~~~dlG~DSL~~vel~~~le~~fgi~i 59 (95)
T 1nq4_A 4 LTLSDLLTLLRECAGEEESIDLGGDVEDVAFDALGYDSLALLNTVGRIERDYGVQL 59 (95)
T ss_dssp CCHHHHHHHHHHHHTCSSTTCSCSCCSSSCHHHHTCCSHHHHHHHHHHHHHTCCCS
T ss_pred ccHHHHHHHHHHHHccccccccccCCCCCChhhhCCCHHHHHHHHHHHHHHHCCcc
Confidence 367899999999999832 23799999999999999999999999999999854
No 31
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=99.22 E-value=1.7e-12 Score=83.29 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCccCCCCcc-ccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 60 PETVQKVCEIVRRQLALPAETELTSESKF-SALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d~~~It~eS~F-~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+++.++|++++++.+++ ++++|+++++| .|||+|||+.+|++..||++|||+-
T Consensus 3 ~~i~~~l~~~~~~~l~~-~~~~i~~~~~l~~~lG~DSl~~~~l~~~le~~fgi~i 56 (79)
T 2l3v_A 3 SDTAERVKKIVVEHLGV-DADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEI 56 (79)
T ss_dssp THHHHHHHHHHHHHTCC-CSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHhCC-CHhhCCCCCccccccCCCHHHHHHHHHHHHHHHCCCC
Confidence 47999999999999999 78899999999 6999999999999999999999853
No 32
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=99.21 E-value=1.8e-12 Score=87.10 Aligned_cols=55 Identities=16% Similarity=0.261 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhCCC-------CCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCCC
Q 033331 60 PETVQKVCEIVRRQLALP-------AETELTSESKFSALGGNSDELRRRIWDWCRRGKLPEH 114 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~-------d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~~ 114 (121)
+++.++|+++|+++++.. ++++|+++++|.|||+|||+++||++.||++|||+-.
T Consensus 3 ~~i~~~i~~ii~~~~~~~~~~~~~~~~~~i~~d~~l~dlg~DSl~~vel~~~lE~~fgi~i~ 64 (92)
T 1fh1_A 3 DQLTLEIISAINKLVKAENGERTSVALGEITTDTELTSLGIDSLGLADVLWDLEQLYGIKIE 64 (92)
T ss_dssp --CHHHHHHHHHHHC----------------------------CTTTTHHHHHHHC------
T ss_pred hHHHHHHHHHHHHHHHhccccccCCCHhhCCCCCCHhhcCCChHHHHHHHHHHHHHhCCccC
Confidence 367899999999999851 3458999999999999999999999999999999543
No 33
>2cg5_B Fatty acid synthase; transferase-hydrolase complex, transferase/hydrolase (comple fatty acid biosynthesis, phosphopantetheine transferase; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=99.16 E-value=3.4e-11 Score=83.01 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 64 QKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 64 ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+.|+++|.+.++++++++|+++..|.|||+|||+.|||.+.||++|||+.
T Consensus 9 ~~v~~~va~iLg~~~~~~I~~~~~l~dLG~DSL~aVELr~~Le~~fgi~l 58 (91)
T 2cg5_B 9 RDLVEAVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVL 58 (91)
T ss_dssp TTHHHHHHHHTTCCSCTTSCTTSBTTTTTCCHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHCCCchhhCCCCCCHHHhCCcchHHHHHHHHHHHHHCCCC
Confidence 57899999999996668999999999999999999999999999999964
No 34
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=99.09 E-value=1.3e-10 Score=75.97 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
...++.+.|++++.+.+++ +.++|+++++|.|||+|||+.++++..||++||++.
T Consensus 8 ~~~~~~~~l~~~~~~~l~~-~~~~i~~~~~~~~lG~DSL~~~~l~~~l~~~~g~~l 62 (89)
T 2kr5_A 8 VSNEKLDAVMRVVSEESGI-ALEELTDDSNFADMGIDSLSSMVIGSRFREDLGLDL 62 (89)
T ss_dssp CCHHHHHHHHHHHHHHHCC-CGGGCCTTCBHHHHTCCHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHCc-CHHHCCCCCCHHHcCccHHHHHHHHHHHHHHHCCCC
Confidence 4578999999999999999 788999999999999999999999999999998853
No 35
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein FA structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=99.06 E-value=4.1e-10 Score=72.65 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
....++.+.|.+++.+.+++ +.++|.++.+|.+||+|||..++++..||++||++.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~-~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~~~~i 65 (88)
T 2afd_A 10 ASVEDIQSWLIDQFAQQLDV-DPDDIDMEESFDNYDLNSSKALILLGRLEKWLGKEL 65 (88)
T ss_dssp SSHHHHHHHHHHHHHHHHTS-CGGGCCTTSCGGGTTCCSTHHHHHHHHHHHHTTSCC
T ss_pred CCHHHHHHHHHHHHHHHHCc-CHHHcCCCCCHHHcCccHHHHHHHHHHHHHHHCCCc
Confidence 35678999999999999999 788999999999999999999999999999998753
No 36
>2liu_A CURA; holo state, transferase; NMR {Lyngbya majuscula} PDB: 2liw_A*
Probab=98.98 E-value=6.4e-10 Score=73.35 Aligned_cols=56 Identities=20% Similarity=0.074 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
....++.+.|++++.+.+++ +.++|.++.+|.|||+|||+.++++..||++||++.
T Consensus 17 ~~~~~~~~~l~~~~~~~l~~-~~~~i~~~~~~~~lG~DSl~~~~l~~~l~~~~g~~l 72 (99)
T 2liu_A 17 VNLSEIKQVLKQQLAEALYT-EESEIAEDQKFVDLGLDSIVGVEWTTTINQTYNLNL 72 (99)
T ss_dssp CCHHHHHHHHHHHHHHHTTS-CGGGCCSSSCHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHHHHCc-CHHHcCCCCCHHHhCccHHHHHHHHHHHHHHHCCCc
Confidence 36788999999999999999 788999999999999999999999999999999853
No 37
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.91 E-value=1.6e-09 Score=81.40 Aligned_cols=56 Identities=20% Similarity=0.130 Sum_probs=52.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
..+.++.+.|++++.+.+++ ++++|.++.+|.|||+|||+.+|++..||++||++.
T Consensus 22 ~~~~~i~~~l~~~~a~~l~~-~~~~i~~~~~f~~lG~DSl~~~el~~~l~~~~g~~l 77 (212)
T 2l22_A 22 VADDECAQFLRQSLAAMLYC-EPGQIRDGSRFLELGLDSVIAAQWIREINKHYQLKI 77 (212)
T ss_dssp CCTTHHHHHHHHHHHHHTTC-CTTSCCTTCBHHHHTCCHHHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHHHHCc-CHHHcCCCCCHHHhCCcHHHHHHHHHHHHHHHCCCC
Confidence 45778999999999999999 788999999999999999999999999999999854
No 38
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=98.88 E-value=1.9e-09 Score=71.04 Aligned_cols=55 Identities=18% Similarity=0.026 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+..+.+.|++++.+.++..+.++|.++.+|.|||+|||..+|++..|+++||++.
T Consensus 18 ~~~~~~~l~~~~~~~l~~~~~~~i~~~~~f~~lG~DSL~a~~l~~~l~~~~g~~l 72 (95)
T 2ju1_A 18 TAELVRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRL 72 (95)
T ss_dssp HHHHHHHHHHHHHHHTTCCCGGGCCSSSCHHHHTCSSHHHHHHHHHHGGGTSSCC
T ss_pred HHHHHHHHHHHHHHHHCCCChhhCCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCC
Confidence 4568899999999999943788999999999999999999999999999998853
No 39
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=98.80 E-value=1.2e-08 Score=68.22 Aligned_cols=53 Identities=19% Similarity=0.188 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
....++.++|++++.+.+++ + +|.++.+|.+||.|||..++++..|+++||++
T Consensus 10 ~p~~~~e~~l~~i~~~vL~~-~--~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~ 62 (91)
T 1dny_A 10 APTNAVESKLAEIWERVLGV-S--GIGILDNFFQIGGHSLKAMAVAAQVHREYQVE 62 (91)
T ss_dssp CCSSHHHHHHHHHHHHHHTC-S--SCCSSCCTTSSCCSSHHHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHHHHHhCC-C--CCCCCCCHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 44668999999999999998 4 69999999999999999999999999999985
No 40
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=98.75 E-value=2.4e-08 Score=66.61 Aligned_cols=52 Identities=17% Similarity=0.096 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
..++.++|++|+++.+++ + +|.++.+|.+||.|||..++++..|+++||++.
T Consensus 14 ~~~~e~~l~~i~~~vL~~-~--~i~~~~~Ff~lGgdSL~a~~l~~~l~~~~g~~l 65 (93)
T 4i4d_A 14 RRALERDIAAIWAETLGR-D--SVGPHEDFAALGGNSIHAIXITNRVEELVDAEL 65 (93)
T ss_dssp HHHHHHHHHHHHHHHHTC-S--CCCTTCCTTTTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHhCC-C--CCCCCCCHHHcCCcHHHHHHHHHHHHHHhCCCC
Confidence 457899999999999998 3 599999999999999999999999999999853
No 41
>2l22_A Mupirocin didomain acyl carrier protein; biosynthetic protein; NMR {Pseudomonas fluorescens}
Probab=98.69 E-value=3.6e-08 Score=73.94 Aligned_cols=54 Identities=17% Similarity=0.112 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+.++.+.|++++.+.+++ +.++|.++.+|.+||+|||+.+|++..||++||++.
T Consensus 128 ~~~i~~~l~~~~~~~l~~-~~~~i~~~~~f~~lG~DSl~a~el~~~l~~~~g~~l 181 (212)
T 2l22_A 128 RESIQDYLKQSLGELLFL-DPGQLRSGAQFLDLGMDSVTGTQWMRGVSRHFSIQL 181 (212)
T ss_dssp HHHHHHHHHHHHHHHHSS-CSSSCCSSCCGGGGCSSSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHCC-ChhhCCCCCCHHHhCCCHHHHHHHHHHHHHHHCCCc
Confidence 567889999999999999 888999999999999999999999999999998753
No 42
>3tej_A Enterobactin synthase component F; nonribosomal peptide, thioesterase, carrier domain, ATP- BIN enterobactin biosynthesis, ION transport, iron; HET: UF0; 1.90A {Escherichia coli} PDB: 2roq_A
Probab=98.19 E-value=2.5e-06 Score=66.45 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=47.9
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
+...++.++|++|+++.|++ +. |..+.+|.+||.|||..++++..|+++||++.
T Consensus 7 ~p~~~~e~~l~~~~~~~l~~-~~--i~~~~~ff~lGgdSl~a~~l~~~l~~~~~~~~ 60 (329)
T 3tej_A 7 APKAGSETIIAAAFSSLLGC-DV--QDADADFFALGGHXLLAMKLAAQLSRQVARQV 60 (329)
T ss_dssp CCCTTHHHHHHHHHHHHHTC--C--CSTTCBTTTTTCCHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHHHHhCC-CC--CCCCCCHHHcCCcHHHHHHHHHHHHHHHCCCC
Confidence 34567899999999999999 44 99999999999999999999999999999853
No 43
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=2.2e-05 Score=55.67 Aligned_cols=52 Identities=19% Similarity=0.170 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHHHHHhC-CCCCCccCCCCccccCCCChHHHHHHHHHHHHhcC-CCC
Q 033331 59 KPETVQKVCEIVRRQLA-LPAETELTSESKFSALGGNSDELRRRIWDWCRRGK-LPE 113 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~-l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~-Ip~ 113 (121)
+.++.++|.+|-.+.|+ + ..|.++++|.+||.|||..+.++..|.++|+ ++.
T Consensus 23 ~~~~E~~La~iW~~vL~~~---~~i~~~ddFF~lGG~SLla~rLv~~ir~~~g~v~l 76 (110)
T 2cq8_A 23 ELVTAEAVRSVWQRILPKV---LEVEDSTDFFKSGAASVDVVRLVEEVKELCDGLEL 76 (110)
T ss_dssp HHHHHHHHHHHHHHHCSSC---SCCCTTCBHHHHHCCTTHHHHHHHHHHHHHTSCCC
T ss_pred chHHHHHHHHHHHHHhCCC---CCCCCCCCHHhcCChHHHHHHHHHHHHHHcCCCCc
Confidence 45699999999999997 5 3599999999999999999999999999998 753
No 44
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis}
Probab=97.69 E-value=6.5e-05 Score=61.19 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
+...++.++|++|.++.|++ + +|..+.+|.+||.|||..+.++..+.++||+.
T Consensus 6 ~p~~~~e~~l~~iw~~vL~~-~--~i~~~d~ff~lGgdSl~a~~l~~~~~~~~g~~ 58 (520)
T 2jgp_A 6 APRSVWEARLAQVWEQVLNV-P--QVGALDDFFALGGHSLRAMRVLSSMHNEYQVD 58 (520)
T ss_dssp CCCSHHHHHHHHHHHHHHTC-S--CCCTTCBTTTTTCCHHHHHHHHHHHHHHHCBC
T ss_pred CCCCHHHHHHHHHHHHHhCC-C--CCCCCccHHHhcccHHHHHHHHHHHHHHhCCC
Confidence 34568899999999999999 4 59999999999999999999999999999875
No 45
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=97.19 E-value=0.00028 Score=55.24 Aligned_cols=48 Identities=13% Similarity=0.067 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCCC
Q 033331 63 VQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 63 ~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+.+++.+.+.+ + ++++|.++.+|.+||+||+.+|+++..+|++ |++.
T Consensus 217 ~dwlr~~va~~L-~-~~~~i~~~~nL~~lGlDSi~~m~l~~~~~~~-g~~~ 264 (287)
T 2fq1_A 217 KAALREVILPLL-D-ESDEPFDDDNLIDYGLDSVRMMALAARWRKV-HGDI 264 (287)
T ss_dssp HHHHHHHHGGGC-C-CSSCCCTTSCSGGGTCCTTHHHHHHHHHTTT-CTTC
T ss_pred HHHHHHHHHHHh-C-CHhhcCCCCCHHHhCccHHHHHHHHHHHHHc-CCCC
Confidence 355788888888 7 7788999999999999999999999999998 8754
No 46
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=96.85 E-value=0.00089 Score=61.49 Aligned_cols=53 Identities=15% Similarity=0.166 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
+...++.++|++|.++.|++ + +|..+.+|.+||.|||..++++..|+++||++
T Consensus 968 ~p~~~~e~~l~~~~~~vL~~-~--~i~~~~~ff~lGg~Sl~a~~l~~~l~~~~g~~ 1020 (1304)
T 2vsq_A 968 GPRNEMEETIAQIWSEVLGR-K--QIGIHDDFFALGGHALKAMTAASRIKKELGID 1020 (1304)
T ss_dssp CCSSHHHHHHHHHHHHHHTC-S--CCCTTCCTTTTTCCHHHHHHHHHHSSSTTSCC
T ss_pred CCCChHHHHHHHHHHHHcCC-C--ccCCCCCHHHhCCChHHHHHHHHHHHHHhCCC
Confidence 44568899999999999998 3 59999999999999999999999999999874
No 47
>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}
Probab=96.63 E-value=0.00031 Score=57.93 Aligned_cols=52 Identities=21% Similarity=0.177 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
+...++.++|.+|.++.|++ + +|..+.+|.+||.|||..+.++..|++ ||++
T Consensus 41 ~p~~~~e~~l~~~w~~~l~~-~--~i~~~~~ff~lGg~Sl~a~~l~~~~~~-~~~~ 92 (508)
T 4f6l_B 41 EPSNEIEQTFVDVFGEVLKQ-N--DVGVDDDFFELGGNSLEAMLVVSHLKR-FGHH 92 (508)
T ss_dssp --------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCC-C--CCCCCCChHHcCchHHHHHHHHHHHHH-cCCC
Confidence 34567899999999999998 4 699999999999999999999999985 8763
No 48
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=95.77 E-value=0.0016 Score=64.52 Aligned_cols=51 Identities=16% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCCC
Q 033331 62 TVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 62 t~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
..+.|.+++.+.|++++.++|.++.+|.|||.|||..|||...|+++||++
T Consensus 2124 ~~~~l~~~~a~vL~~~~~~~i~~~~~~~~lG~DSL~avelr~~i~~~~~~~ 2174 (2512)
T 2vz8_A 2124 SQKDLVKAVAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLV 2174 (2512)
T ss_dssp ---------------------------------------------------
T ss_pred hHHHHHHHHHHHhCCCcccccCCCCchHHhCcchHHHHHHHHHHHHHhCCc
Confidence 346789999999999556789999999999999999999999999999874
No 49
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=95.70 E-value=0.0018 Score=55.18 Aligned_cols=52 Identities=13% Similarity=-0.005 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHH-hcCCC
Q 033331 58 AKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCR-RGKLP 112 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEd-eF~Ip 112 (121)
...++.++|++|.++.|++ + .+..+.+|.+||.|||..+.++-.|++ +||+.
T Consensus 521 ~~~~~e~~l~~iw~~vL~~-~--~~~~~d~Ff~lGGdSl~a~~l~~~l~~~~~~~~ 573 (620)
T 4dg8_A 521 ALDPDQRGCAQLWSELLGC-E--VGAADQDFFLCGGNSLLALQLVALCQSAGAGAN 573 (620)
T ss_dssp --------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHhCC-C--CCCCCCChhhccCcHHHHHHHHHHHHhhCCCCC
Confidence 3456788899999999988 3 478889999999999999999999998 78763
No 50
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=95.06 E-value=0.017 Score=48.60 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhcCC
Q 033331 61 ETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRGKL 111 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF~I 111 (121)
++.+.+.+++.+.++. ..++..+.+|.+||.|||..+.++-.|++ +++
T Consensus 545 ~~~~~l~~~~~~~l~~--~~~~~~~d~Ff~lGgdSl~a~~l~~~l~~-~~~ 592 (617)
T 3rg2_A 545 ASKAALREVILPLLDE--SDEPFDDDNLIDYGLDSVRMMALAARWRK-VHG 592 (617)
T ss_dssp CSHHHHHHHHGGGSCT--TCCCCTTSCGGGGTCCHHHHHHHHHHHHT-TST
T ss_pred ccHHHHHHHHHHHhcc--CCCCCCCCChhhcCccHHHHHHHHHHHHH-hcC
Confidence 4567888999888864 34688899999999999999999999987 454
No 51
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=90.79 E-value=0.21 Score=29.49 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=18.5
Q ss_pred ChHHHHHHHHHHHHhcCCCCCC
Q 033331 94 NSDELRRRIWDWCRRGKLPEHH 115 (121)
Q Consensus 94 DSLD~VEIVm~LEdeF~Ip~~~ 115 (121)
.=|++.|++-.||++|||+..+
T Consensus 14 TvlE~~eLvk~leekfGVsaaa 35 (40)
T 1dd4_C 14 TVSELAELVKKLEDKFGVTAAA 35 (40)
T ss_dssp CHHHHHHHHHHHHHHTCCCSCC
T ss_pred cHHHHHHHHHHHHHHHCCCccc
Confidence 3478899999999999998643
No 52
>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*
Probab=84.33 E-value=0.19 Score=51.29 Aligned_cols=52 Identities=8% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCccCCCCccccC-CCChHHHHHHHHHHHHhcCC--CCC
Q 033331 62 TVQKVCEIVRRQLALPAETELTSESKFSAL-GGNSDELRRRIWDWCRRGKL--PEH 114 (121)
Q Consensus 62 t~ekV~~IV~~~l~l~d~~~It~eS~F~DL-GaDSLD~VEIVm~LEdeF~I--p~~ 114 (121)
..+.|..||...++. ..++|.++.++.+| |.+|.-..||++.|+.|||+ |+.
T Consensus 1795 a~~~~~~liA~~~k~-~~~~i~~~~~i~~L~gg~St~~nell~dl~~efg~~~p~~ 1849 (3089)
T 3zen_D 1795 AADATVALIALSAKM-RIDQIEALDSIESITDGASSRRNQLLVDLGSELNLGAIDG 1849 (3089)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCC-ChhHCCccccHHHHhCCchHHHHHHHHHHHHHhCCCCCCc
Confidence 467799999999998 88899999999988 99999999999999999986 655
No 53
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=82.83 E-value=0.88 Score=25.22 Aligned_cols=16 Identities=13% Similarity=-0.055 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhcC
Q 033331 95 SDELRRRIWDWCRRGK 110 (121)
Q Consensus 95 SLD~VEIVm~LEdeF~ 110 (121)
=|.+.|+|-++|++||
T Consensus 15 vlEl~eLvk~lEe~fG 30 (30)
T 1zav_U 15 VSELAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhC
Confidence 3788999999999997
No 54
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=64.45 E-value=4.4 Score=29.53 Aligned_cols=23 Identities=13% Similarity=-0.150 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCC
Q 033331 96 DELRRRIWDWCRRGKLPEHHNGP 118 (121)
Q Consensus 96 LD~VEIVm~LEdeF~Ip~~~~~p 118 (121)
|.+.||+-.||++|||+.....|
T Consensus 16 lE~~eLv~~leekfgv~aaa~~~ 38 (137)
T 2ftc_E 16 LEISDLNELLKKTLKIQDVGLMP 38 (137)
T ss_pred HHHHHHHHHHHHHhCCCcccccc
Confidence 78899999999999999865433
No 55
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=60.58 E-value=5.8 Score=28.44 Aligned_cols=21 Identities=14% Similarity=-0.167 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCC
Q 033331 95 SDELRRRIWDWCRRGKLPEHH 115 (121)
Q Consensus 95 SLD~VEIVm~LEdeF~Ip~~~ 115 (121)
=|.+.|++-.||++|||+..+
T Consensus 17 llE~~eLv~~lee~fgv~aaa 37 (122)
T 2zjq_5 17 IMELADLIDGLKETWGVTAAV 37 (122)
T ss_pred HHHHHHHHHHHHHHcCCCCcc
Confidence 378899999999999998753
No 56
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=59.46 E-value=6.1 Score=28.40 Aligned_cols=21 Identities=14% Similarity=-0.083 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCC
Q 033331 95 SDELRRRIWDWCRRGKLPEHH 115 (121)
Q Consensus 95 SLD~VEIVm~LEdeF~Ip~~~ 115 (121)
=|.+.|++-.||++|||+...
T Consensus 17 llE~~eLv~~lee~fgv~aaa 37 (125)
T 2j01_L 17 VLELKQLIDALKEAWGVTAAA 37 (125)
T ss_pred HHHHHHHHHHHHHHcCCCccc
Confidence 378899999999999998753
No 57
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=50.67 E-value=4.6 Score=24.41 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCCChHHHHHHHHH
Q 033331 59 KPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGGNSDELRRRIWD 104 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGaDSLD~VEIVm~ 104 (121)
..++++.|++.|.+..+++... .+..+.++.|+|+..-+++.++..
T Consensus 19 ~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~r 72 (76)
T 3b1l_X 19 SDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQR 72 (76)
Confidence 4578899999999888883221 244455566777776666666554
No 58
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=44.70 E-value=7.3 Score=28.16 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHhcCCCC
Q 033331 95 SDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 95 SLD~VEIVm~LEdeF~Ip~ 113 (121)
=|.+.|++-.||++|||+.
T Consensus 15 llE~~eLv~~lee~fgv~a 33 (128)
T 1dd3_A 15 VSELAELVKKLEDKFGVTA 33 (128)
T ss_dssp HHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 3788999999999999964
No 59
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=44.09 E-value=4.8 Score=27.63 Aligned_cols=48 Identities=10% Similarity=0.203 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCCChHHHHHHHHHHH
Q 033331 59 KPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGGNSDELRRRIWDWC 106 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGaDSLD~VEIVm~LE 106 (121)
..+++..|++.|.+..+++... .+..+.++.|+|+..-+++.+++.+.
T Consensus 19 ~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 19 SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp --------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcC
Confidence 4578999999999888884322 25556667799998888888876553
No 60
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=43.26 E-value=0.84 Score=30.40 Aligned_cols=46 Identities=7% Similarity=0.027 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhCCCC--------CCccCCCCccccCCCChHHHHHHHHHH
Q 033331 60 PETVQKVCEIVRRQLALPA--------ETELTSESKFSALGGNSDELRRRIWDW 105 (121)
Q Consensus 60 ~et~ekV~~IV~~~l~l~d--------~~~It~eS~F~DLGaDSLD~VEIVm~L 105 (121)
.+.+++|.+-.+++.+++. ...|.++.+..|||+..=|++|++...
T Consensus 25 ~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 25 HTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp TSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC
T ss_pred CChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEec
Confidence 4577889999999999832 233888888889999888887766443
No 61
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=40.70 E-value=5.8 Score=28.64 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCCChHHHHHHHHHHHH
Q 033331 59 KPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGGNSDELRRRIWDWCR 107 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGaDSLD~VEIVm~LEd 107 (121)
..+++..|++.|.+..+++... .+..+.++.|+|+..-+++.+++.+.-
T Consensus 19 ~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~G 75 (152)
T 3u5c_f 19 SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75 (152)
T ss_dssp ---------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccC
Confidence 4678999999999988884322 255566677999988888888877653
No 62
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=38.32 E-value=4.5 Score=29.00 Aligned_cols=21 Identities=5% Similarity=-0.148 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhcCCCCCC
Q 033331 95 SDELRRRIWDWCRRGKLPEHH 115 (121)
Q Consensus 95 SLD~VEIVm~LEdeF~Ip~~~ 115 (121)
=|.+.|+|-.||++|||+...
T Consensus 17 llE~~eLv~~lee~fgVsaaa 37 (121)
T 3sgf_J 17 VMDVVELISAMEEKFGVSAAA 37 (121)
T ss_dssp HHHHHHHHTTTCSCC------
T ss_pred HHHHHHHHHHHHHHcCCCccc
Confidence 378899999999999998654
No 63
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=37.63 E-value=40 Score=20.33 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=29.9
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCChHHH
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGNSDEL 98 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaDSLD~ 98 (121)
+.+.+. ..+++..|++.|.+..++ +++. +..+.++.|+|+..=++
T Consensus 16 ~~~~v~-~~~tV~~lK~~i~~~~~i-p~~~qrL~~~g~~L~d~~tL~~~~i~~~~~ 69 (85)
T 3n3k_B 16 IILEVE-PSDTIENVKAKIQDKEGI-PPDQQRLIFAGKQLEDGRTLSDYNIHNHSA 69 (85)
T ss_dssp EEEECC-TTCBHHHHHHHHHHHHCC-CGGGEEEEETBEECCTTCBTTTTTCCTTCE
T ss_pred EEEEEC-CCCcHHHHHHHHHHHHCC-CHHHEEEEECCeECCCCCCHHHCCCCCCCE
Confidence 555444 467999999999999999 4332 44555566777654433
No 64
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=37.33 E-value=27 Score=23.79 Aligned_cols=56 Identities=5% Similarity=0.007 Sum_probs=46.2
Q ss_pred cCChHHHHHHHHHHHHHHhCCCCC---CccCCCCccc-cCCCChHHHHHHHHHHHHhcCCC
Q 033331 56 CSAKPETVQKVCEIVRRQLALPAE---TELTSESKFS-ALGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 56 c~ak~et~ekV~~IV~~~l~l~d~---~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip 112 (121)
-.++++++.+|-+.|+++- |-|+ ..|..|.+|. =+|-|.+.+.||--.|..+|--+
T Consensus 34 ~~sR~eVvk~lW~YIK~nn-LQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~ 93 (101)
T 1v32_A 34 MISRYDVSDTIAKYISKEG-LLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKEN 93 (101)
T ss_dssp CCCHHHHHHHHHHHHHHHT-CBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSC
T ss_pred ccCHHHHHHHHHHHHHhhc-CcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCcc
Confidence 3678999999999999764 4244 3488999998 78999999999999999998543
No 65
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=36.83 E-value=19 Score=25.33 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=31.3
Q ss_pred ceeeecCC-hHHHHHHHHHHHHHHhCCCCCCc--------cCCCCccccCCCCh
Q 033331 51 RFCVSCSA-KPETVQKVCEIVRRQLALPAETE--------LTSESKFSALGGNS 95 (121)
Q Consensus 51 r~~v~c~a-k~et~ekV~~IV~~~l~l~d~~~--------It~eS~F~DLGaDS 95 (121)
++.+..-+ ..+|+..|++.|.+..|++.... +..+.++.|.|+.+
T Consensus 11 ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~ 64 (118)
T 4ajy_B 11 KTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTS 64 (118)
T ss_dssp TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCG
T ss_pred CEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCc
Confidence 34443333 34799999999999999944322 55556677999887
No 66
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=35.62 E-value=34 Score=19.47 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
..|....+.|.+.+.+.+++ +++.
T Consensus 14 eqk~~l~~~i~~~l~~~lg~-~~~~ 37 (61)
T 2opa_A 14 EQKRNLVEKVTEAVKETTGA-SEEK 37 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-CGGG
T ss_pred HHHHHHHHHHHHHHHHHhCc-CcCe
Confidence 34678999999999999999 4433
No 67
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=35.03 E-value=42 Score=19.70 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.|.+..+.|.+.+.+.+|+ +++.
T Consensus 14 qK~~L~~~it~~~~~~lg~-~~~~ 36 (62)
T 3m20_A 14 KKREFVERLTSVAAEIYGM-DRSA 36 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTC-CTTS
T ss_pred HHHHHHHHHHHHHHHHhCc-Ccce
Confidence 3778999999999999999 5444
No 68
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=34.72 E-value=35 Score=19.39 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=19.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
..|.+..+.|.+.+.+.+++ +++.
T Consensus 14 e~k~~l~~~i~~~l~~~lg~-p~~~ 37 (62)
T 1otf_A 14 EQKETLIRQVSEAMANSLDA-PLER 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CGGG
T ss_pred HHHHHHHHHHHHHHHHHhCc-Cccc
Confidence 34678999999999999999 4433
No 69
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=34.53 E-value=39 Score=21.20 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=28.7
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCCh
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGNS 95 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaDS 95 (121)
.+.+.+. ..+++..|++.|.+..+++ ++. +..+.++.++|+..
T Consensus 21 ~~~l~v~-~~~TV~~LK~~I~~~~gip-~~~qrL~~~Gk~L~D~~tL~~~gi~~ 72 (88)
T 1sif_A 21 TFTVEME-PSDTIENLKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYNIQK 72 (88)
T ss_dssp EEEEECC-TTSBHHHHHHHHHHHHCCC-GGGCEEEETTEECCTTSBSGGGTCCT
T ss_pred EEEEEEC-CCChHHHHHHHHHHHHCcC-hhhEEEEECCEECCCCCcHHHcCCCC
Confidence 3555544 4578999999999999994 333 44455566666643
No 70
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=34.03 E-value=38 Score=20.33 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=27.4
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCCCh
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGGNS 95 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGaDS 95 (121)
+.+.+. ..+++..|++.|.+..+++... .+..+..+.++|+..
T Consensus 16 ~~~~v~-~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~ 66 (85)
T 3mtn_B 16 ITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 66 (85)
T ss_dssp EEEEEC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCT
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCC
Confidence 445443 4678999999999999994321 144444555666544
No 71
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=33.66 E-value=46 Score=20.82 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=30.5
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCCChHHH
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGGNSDEL 98 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGaDSLD~ 98 (121)
.|.+.+. ..+++..|++.|.+..+++... .+..+.++.|+|+..=++
T Consensus 12 ~~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~ 66 (88)
T 4fbj_B 12 EIEIDIE-PTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSV 66 (88)
T ss_dssp EEEEECC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCE
T ss_pred EEEEEEC-CCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCE
Confidence 3555443 4568999999999999994322 144555566777654433
No 72
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=32.49 E-value=36 Score=19.55 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.|.+..+.|.+.+.+.+|+ +++.
T Consensus 16 qk~~l~~~lt~~l~~~lg~-~~~~ 38 (64)
T 3abf_A 16 KKRELVRRLTEMASRLLGE-PYEE 38 (64)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CGGG
T ss_pred HHHHHHHHHHHHHHHHhCC-Cccc
Confidence 3678999999999999999 4444
No 73
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=32.25 E-value=37 Score=22.84 Aligned_cols=29 Identities=14% Similarity=0.315 Sum_probs=22.7
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
-++|.|.. .+++..|++.|.++.|+ ++++
T Consensus 33 k~~v~v~p-~DTI~~LK~~I~~k~Gi-p~~q 61 (93)
T 3plu_A 33 KVRVKCLG-EDSVGDFKKVLSLQIGT-QPNK 61 (93)
T ss_dssp EEEEEEET-TSBHHHHHHHHHHHHTC-CGGG
T ss_pred EEEEEECC-cCHHHHHHHHHHHHhCC-CHHH
Confidence 45677765 45999999999999999 5544
No 74
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=32.20 E-value=38 Score=22.39 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHHHHHhCCCCC---CccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAE---TELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~---~~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+++|++.+|-+.|+++= +-|+ ..|..|.++. =+|-|.+.+.||--.|..+|--++
T Consensus 27 ~sr~evvk~lW~YIK~n~-Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1uhr_A 27 QTRPVIIQALWQYIKTHK-LQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE 86 (93)
T ss_dssp EEHHHHHHHHHHHHHHTT-CBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred cCHHHHHHHHHHHHHhcc-CCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 568899999999999754 4244 3499999998 789999999999999998885443
No 75
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=31.02 E-value=50 Score=19.18 Aligned_cols=41 Identities=12% Similarity=0.253 Sum_probs=26.5
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCC
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGN 94 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaD 94 (121)
+.+.+. ..+++..|++.|.+..+++ ++. +..+.++.|+|+.
T Consensus 13 ~~i~v~-~~~tv~~lK~~i~~~~~i~-~~~q~L~~~g~~L~d~~tL~~~~i~ 62 (76)
T 3a9j_A 13 ITLEVE-PSDTIENVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLSDYNIQ 62 (76)
T ss_dssp EEEECC-TTCBHHHHHHHHHHHHCCC-GGGEEEEETTEECCTTCBTGGGTCC
T ss_pred EEEEEC-CCCcHHHHHHHHHHHHCcC-HHHeEEEECCeECCCCCcHHHcCCC
Confidence 444443 4568999999999999994 333 3444455566553
No 76
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=30.96 E-value=4.2 Score=26.93 Aligned_cols=45 Identities=7% Similarity=0.061 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHHHHHhCCCC--------CCccCCCCccccCCCChHHHHHHHH
Q 033331 59 KPETVQKVCEIVRRQLALPA--------ETELTSESKFSALGGNSDELRRRIW 103 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d--------~~~It~eS~F~DLGaDSLD~VEIVm 103 (121)
+.+.+++|.+-++++.+++. ...|.++.+..||++..=|+++++.
T Consensus 26 ~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 78 (94)
T 2io1_B 26 RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 78 (94)
T ss_dssp TTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 34678889999999999832 3338888888899988877776543
No 77
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=29.92 E-value=46 Score=19.72 Aligned_cols=23 Identities=13% Similarity=0.292 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.|.+..+.|.+.+.+.+++ +++.
T Consensus 18 qK~~l~~~lt~~l~~~lg~-p~~~ 40 (67)
T 3m21_A 18 QKQQLIEGVSDLMVKVLNK-NKAS 40 (67)
T ss_dssp HHHHHHHHHHHHHHHHHCC-CGGG
T ss_pred HHHHHHHHHHHHHHHHHCc-Cccc
Confidence 3678999999999999999 4433
No 78
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=28.58 E-value=32 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=26.3
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCC
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGG 93 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGa 93 (121)
|.+.+. ..+++..|++.|.+..+++... .+..+.++.++|+
T Consensus 30 ~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i 78 (88)
T 4eew_A 30 RTFIVG-AQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV 78 (88)
T ss_dssp EEEEEE-TTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC
T ss_pred EEEEEC-CCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC
Confidence 344333 4568999999999999994322 1444455556666
No 79
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=27.66 E-value=54 Score=19.23 Aligned_cols=23 Identities=4% Similarity=-0.020 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.|.++.+.|.+.+.+.+++ +++.
T Consensus 15 qk~~L~~~it~~~~~~lg~-p~~~ 37 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGT-PVEA 37 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCC-CGGG
T ss_pred HHHHHHHHHHHHHHHHhCc-Cccc
Confidence 4778999999999999999 4433
No 80
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.55 E-value=54 Score=19.49 Aligned_cols=19 Identities=26% Similarity=0.496 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHhCCC
Q 033331 59 KPETVQKVCEIVRRQLALP 77 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~ 77 (121)
..+++..|++.|.+..+++
T Consensus 26 ~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 26 EDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp SSCBHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHCcC
Confidence 4568999999999999994
No 81
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=27.40 E-value=58 Score=19.74 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=27.6
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCCh
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGNS 95 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaDS 95 (121)
|.+.+. ..+++..|++.|.+..+++ ++. +..+.++.|+|+..
T Consensus 25 ~~~~v~-~~~tV~~lK~~i~~~~gip-~~~qrL~~~G~~L~d~~tL~~~~i~~ 75 (88)
T 3dbh_I 25 IEIDIE-PTDKVERIKERVEEKEGIP-PQQQRLIYSGKQMNDEKTAADYKILG 75 (88)
T ss_dssp EEEEEC-TTCBHHHHHHHHHHHHCCC-GGGCCEEETTEECCTTSBGGGGTCCT
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHCcC-HHHEEEEECCeECCCCCcHHHcCCCC
Confidence 445443 4568999999999999994 333 44455555666544
No 82
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=27.25 E-value=2.6 Score=25.95 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCChHHH
Q 033331 59 KPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGNSDEL 98 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaDSLD~ 98 (121)
..+++.+|++.+.+..++ ++++ +.++.++.|+|+..-|+
T Consensus 22 ~~~tv~~lk~~i~~~~gi-~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~ 69 (79)
T 2uyz_B 22 MTTHLKKLKESYCQRQGV-PMNSLRFLFEGQRIADNHTPKELGMEEEDV 69 (79)
T ss_dssp TTSCTHHHHHHHHHHHTC-CGGGEEEEETTEECCTTCCHHHHTCCTTEE
T ss_pred CCChHHHHHHHHHHHHCC-CcccEEEEECCEEeCCCCCHHHcCCCCCCE
Confidence 457899999999999999 4333 45555555666654443
No 83
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=26.83 E-value=42 Score=20.74 Aligned_cols=40 Identities=10% Similarity=0.143 Sum_probs=26.5
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCC
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGG 93 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGa 93 (121)
|.+.+. ..+++..|++.|.+..++ +.+. +..+..+.|+|+
T Consensus 18 ~~~~v~-~~~tV~~lK~~i~~~~gi-p~~~qrLi~~Gk~L~d~~tL~~~~i 66 (90)
T 4dwf_A 18 RTFIVG-AQMNVKEFKEHIAASVSI-PSEKQRLIYQGRVLQDDKKLQEYNV 66 (90)
T ss_dssp EEEEEE-TTCBHHHHHHHHHHHHTC-CGGGEEEEETTEECCTTSBGGGGTC
T ss_pred EEEEEC-CCCCHHHHHHHHHHHhCC-CHHHEEEEECCeECCCCCCHHHcCC
Confidence 344333 456899999999999999 4333 444555667666
No 84
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=26.50 E-value=30 Score=22.90 Aligned_cols=56 Identities=9% Similarity=0.169 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCC---ccCCCCccc-cCCCChHHHHHHHHHHHHhcCCCC
Q 033331 57 SAKPETVQKVCEIVRRQLALPAET---ELTSESKFS-ALGGNSDELRRRIWDWCRRGKLPE 113 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~---~It~eS~F~-DLGaDSLD~VEIVm~LEdeF~Ip~ 113 (121)
.+++|++.+|-+.|+++= +-|+. .|..|.++. =+|-|++.+.||--.|..+|--++
T Consensus 27 ~sr~evvk~lW~YIK~n~-Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p~~ 86 (93)
T 1v31_A 27 ETRPRIIAAIWHYVKARK-LQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPP 86 (93)
T ss_dssp ECSHHHHHHHHHHHHHTT-CBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCCC
T ss_pred cCHHHHHHHHHHHHHHcc-CcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCCCC
Confidence 578999999999999754 43544 388999998 789999999999999998885443
No 85
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=26.19 E-value=67 Score=20.28 Aligned_cols=26 Identities=15% Similarity=0.216 Sum_probs=20.4
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCC
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALP 77 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~ 77 (121)
-+||.+. ..+++..|++-|.+.++++
T Consensus 15 ~~Ri~v~-~~~t~~~L~~~I~~~~~i~ 40 (80)
T 2pjh_A 15 VKRITAT-KRETAATFLKKVAKEFGFQ 40 (80)
T ss_dssp EEECCCC-SSCCHHHHHHHHHHHTCCC
T ss_pred CEEEEcC-CcChHHHHHHHHHHHcCCC
Confidence 4677755 4569999999999999984
No 86
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=26.17 E-value=46 Score=19.38 Aligned_cols=41 Identities=10% Similarity=0.144 Sum_probs=26.8
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCC
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGN 94 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaD 94 (121)
+.+.+. ..+++..|++.|.+..++ +++. +.++.++.++|+.
T Consensus 13 ~~~~v~-~~~tv~~lK~~i~~~~~i-~~~~q~L~~~g~~L~d~~tL~~~~i~ 62 (76)
T 1ndd_A 13 IEIDIE-PTDKVERIKERVEEKEGI-PPQQQRLIYSGKQMNDEKTAADYKIL 62 (76)
T ss_dssp EEEECC-TTCBHHHHHHHHHHHHCC-CGGGEEEEETTEECCTTSBGGGGTCC
T ss_pred EEEEEC-CCChHHHHHHHHHHHHCc-ChHHEEEEECCEECCCCCcHHHcCCC
Confidence 444443 457899999999999999 4333 3444455566654
No 87
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=26.02 E-value=53 Score=19.79 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.|.+..+.|.+.+.+.+++ +++.
T Consensus 16 qK~~L~~~it~~l~~~lg~-p~~~ 38 (72)
T 3mb2_A 16 QKAELARALSAAAAAAFDV-PLAE 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTC-CGGG
T ss_pred HHHHHHHHHHHHHHHHhCC-Cccc
Confidence 4678999999999999999 4443
No 88
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=25.91 E-value=66 Score=20.07 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=26.6
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc--------cCCCCccccCCCC
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE--------LTSESKFSALGGN 94 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~--------It~eS~F~DLGaD 94 (121)
|.+.+. ..+++..|++.|.+..+++.... +..+..+.++|+.
T Consensus 24 ~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~ 73 (85)
T 2kd0_A 24 IPLSVS-PDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVG 73 (85)
T ss_dssp EEEEEC-TTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCC
T ss_pred EEEEEC-CCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCC
Confidence 444443 35689999999999999943221 3344455566653
No 89
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=25.48 E-value=69 Score=20.37 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=28.0
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc--------cCCCCccccCCCCh
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE--------LTSESKFSALGGNS 95 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~--------It~eS~F~DLGaDS 95 (121)
|.+.+. ..+++..|++.|.+..+++.... +..+..+.++|+..
T Consensus 35 ~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~ 85 (98)
T 4hcn_B 35 ITLEVE-SSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 85 (98)
T ss_dssp EEEECC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCT
T ss_pred EEEEEC-CCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCC
Confidence 555443 46799999999999999943221 44455555666644
No 90
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=24.84 E-value=1.6e+02 Score=23.39 Aligned_cols=46 Identities=11% Similarity=0.052 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHHHHHHHHHHHhc
Q 033331 63 VQKVCEIVRRQLALPAETELTSESKFSALGGNSDELRRRIWDWCRRG 109 (121)
Q Consensus 63 ~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~VEIVm~LEdeF 109 (121)
++.+.+++.. .+.+....+----+++|-|-+|+.++++++++...|
T Consensus 69 ~~~L~~ll~~-~g~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~ 114 (330)
T 1fjm_A 69 YYDLLRLFEY-GGFPPESNYLFLGDYVDRGKQSLETICLLLAYKIKY 114 (330)
T ss_dssp HHHHHHHHHH-HCSTTSSCEEECSCCSSSSSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH-hCCCCcceEEeCCCcCCCCCChHHHHHHHHHhhhhc
Confidence 4556666653 444333333333445577999999999999997655
No 91
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=24.83 E-value=73 Score=19.77 Aligned_cols=48 Identities=8% Similarity=0.151 Sum_probs=31.4
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCChHHHHHH
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGNSDELRRR 101 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaDSLD~VEI 101 (121)
|.+.+. ..+++..|++.|.+..++ +.+. +..+.++.|+|+..=+++.+
T Consensus 14 ~~~~v~-~~~TV~~LK~~i~~~~gi-p~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l 70 (96)
T 3k9o_B 14 ITLEVE-PSDTIENVKAKIQDKEGI-PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL 70 (96)
T ss_dssp EEEECC-TTCBHHHHHHHHHHHHCC-CGGGEEEEETTEECCTTSBTGGGTCCTTCEEEE
T ss_pred EEEEEC-CCCCHHHHHHHHHhhhCC-ChhHEEEEECCEECCCCCcHHHcCCCCCCEEEE
Confidence 445443 467899999999999999 4332 55555666777655444433
No 92
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=24.82 E-value=68 Score=17.91 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=17.1
Q ss_pred ChHHHHHHHHHHHHHHhCCC
Q 033331 58 AKPETVQKVCEIVRRQLALP 77 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~ 77 (121)
.|.+..+.|.+.+.+.++++
T Consensus 18 ~k~~l~~~l~~~l~~~lg~p 37 (63)
T 2x4k_A 18 QLKNLVSEVTDAVEKTTGAN 37 (63)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhCcC
Confidence 36678999999999999993
No 93
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.47 E-value=11 Score=25.58 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHhCCC--------CCCccCCCCccccCCCChHHHHHHH
Q 033331 59 KPETVQKVCEIVRRQLALP--------AETELTSESKFSALGGNSDELRRRI 102 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~--------d~~~It~eS~F~DLGaDSLD~VEIV 102 (121)
+...+.+|.+-++++.+++ +...|.++.+..|||+..=|+++++
T Consensus 43 ~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~ 94 (104)
T 1wz0_A 43 RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 94 (104)
T ss_dssp TTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEEC
T ss_pred CCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 3456899999999999984 2334788888889988877776654
No 94
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=23.98 E-value=65 Score=19.61 Aligned_cols=39 Identities=10% Similarity=0.223 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCccCCCCccccCCCChHHH
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETELTSESKFSALGGNSDEL 98 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~It~eS~F~DLGaDSLD~ 98 (121)
..|.+..+.|++.+.+.+|+ +++.+. -.|.+...+..-.
T Consensus 15 eqk~~L~~~l~~~l~~~lgi-p~~~v~--V~i~e~~~~~w~~ 53 (76)
T 1gyx_A 15 QQKAALAADITDVIIRHLNS-KDSSIS--IALQQIQPESWQA 53 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CGGGCE--EEEEECCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHhCc-CCceEE--EEEEEeChHHEEE
Confidence 44678999999999999999 443321 1123665555544
No 95
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.85 E-value=7.8 Score=26.40 Aligned_cols=45 Identities=9% Similarity=0.195 Sum_probs=29.1
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCCCCCcc---------CCCCccccCCCChHH
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALPAETEL---------TSESKFSALGGNSDE 97 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~d~~~I---------t~eS~F~DLGaDSLD 97 (121)
.+.+.|.. .+++..|++.|.++.|+ +++++ ..+.++.|.|+...+
T Consensus 40 ~i~lev~p-~dTV~~lK~~Ia~k~Gi-p~~qQrLi~~Gk~L~D~~TL~dygI~~gs 93 (100)
T 1uh6_A 40 KVRVKCNT-DDTIGDLKKLIAAQTGT-RWNKIVLKKWYTIFKDHVSLGDYEIHDGM 93 (100)
T ss_dssp CEEEEEET-TSBHHHHHHHHHHHHCC-CGGGCEEEETTEECCSSCBHHHHTCCTTE
T ss_pred EEEEEeCC-CCcHHHHHHHHHHHhCC-CHHHEEEEECCEECCCCCCHHHcCCCCCC
Confidence 35566654 56899999999999999 44442 234445565554433
No 96
>3hi2_B Motility quorum-sensing regulator MQSR; toxin-antitoxin system, Zn-binding protein, MQSA, YGIU B3022, B3021, stress response; 2.00A {Escherichia coli k-12}
Probab=23.70 E-value=9.9 Score=26.36 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCCCccCCCCccc--cCCCChHHHHHHHHHHHHh
Q 033331 63 VQKVCEIVRRQLALPAETELTSESKFS--ALGGNSDELRRRIWDWCRR 108 (121)
Q Consensus 63 ~ekV~~IV~~~l~l~d~~~It~eS~F~--DLGaDSLD~VEIVm~LEde 108 (121)
+++|++++.. -++ .+|..+.-. +||+|.-|++++|.+|+.+
T Consensus 13 L~~ik~l~~~-g~~----~~T~sA~~ga~~LG~~~~~m~~vI~~L~~~ 55 (101)
T 3hi2_B 13 LSQVKKLVNA-GQV----RTTRSALLNADELGLDFDGMCNVIIGLSES 55 (101)
T ss_dssp HHHHHHHHHT-TCE----EEEHHHHHHHHHTTCCHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHc-CCh----HHHHHHHhhHHHhCCCHHHHHHHHHhcCHH
Confidence 4677777765 223 355555432 9999999999999999865
No 97
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=23.10 E-value=55 Score=19.59 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=27.4
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCCCh
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGGNS 95 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGaDS 95 (121)
+.+.+. ..+++..|++.|.+..++|... .+..+.++.|+|+..
T Consensus 17 ~~~~v~-~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~ 67 (79)
T 3phx_B 17 STYEVR-LTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKP 67 (79)
T ss_dssp EEEEEC-TTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCT
T ss_pred EEEEEC-CcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCC
Confidence 344333 4568999999999999994322 244555566666543
No 98
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=22.99 E-value=50 Score=20.60 Aligned_cols=43 Identities=12% Similarity=0.269 Sum_probs=27.8
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCCCCC--------ccCCCCccccCCCCh
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALPAET--------ELTSESKFSALGGNS 95 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~d~~--------~It~eS~F~DLGaDS 95 (121)
|.+.+. ..+++..|++.|.+..+++... .+..+.++.++|+..
T Consensus 30 ~~l~v~-~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~ 80 (91)
T 3v6c_B 30 ITLEVE-PSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 80 (91)
T ss_dssp EEEEEC-TTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCT
T ss_pred EEEEEC-CCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCC
Confidence 444433 4679999999999999994322 144455555666543
No 99
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=22.89 E-value=17 Score=22.36 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHHHhCCCC--------CCccCCCCccccCCCChHHHHH
Q 033331 59 KPETVQKVCEIVRRQLALPA--------ETELTSESKFSALGGNSDELRR 100 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d--------~~~It~eS~F~DLGaDSLD~VE 100 (121)
+...+++|.+-.+++.|++. ...|.++.+..|||+..=|+++
T Consensus 20 ~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Id 69 (72)
T 1wm3_A 20 RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTID 69 (72)
T ss_dssp TTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEE
T ss_pred CCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEE
Confidence 34577888888899999832 2337788888888877655443
No 100
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=22.87 E-value=71 Score=19.65 Aligned_cols=24 Identities=4% Similarity=0.051 Sum_probs=19.3
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
..|.+..+.|.+.+.+.+++ +++.
T Consensus 15 eqK~~L~~~it~~l~~~lg~-p~~~ 38 (76)
T 3ej9_A 15 EQKRALSAGLLRVISEATGE-PREN 38 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-CGGG
T ss_pred HHHHHHHHHHHHHHHHHHCc-Cccc
Confidence 34678999999999999999 4444
No 101
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=22.85 E-value=57 Score=19.19 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=18.7
Q ss_pred eeeecCChHHHHHHHHHHHHHHhCCC
Q 033331 52 FCVSCSAKPETVQKVCEIVRRQLALP 77 (121)
Q Consensus 52 ~~v~c~ak~et~ekV~~IV~~~l~l~ 77 (121)
+.+.+. ..+++..|++.|.+..+++
T Consensus 16 ~~~~v~-~~~tV~~LK~~i~~~~~i~ 40 (77)
T 2bwf_A 16 WEVNVA-PESTVLQFKEAINKANGIP 40 (77)
T ss_dssp EEEEEC-TTCBHHHHHHHHHHHHCCC
T ss_pred EEEEEC-CCCcHHHHHHHHHHHhCCC
Confidence 444333 4568999999999999993
No 102
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=22.84 E-value=42 Score=21.84 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=19.6
Q ss_pred CCCChHHHHHHHHHHHHhcCCC
Q 033331 91 LGGNSDELRRRIWDWCRRGKLP 112 (121)
Q Consensus 91 LGaDSLD~VEIVm~LEdeF~Ip 112 (121)
=|.|.|+.-++-+.||.+|||.
T Consensus 54 R~s~~le~kDvql~Ler~wni~ 75 (76)
T 1h3o_B 54 RKSSTLEVKDVQLHLERQWNMW 75 (76)
T ss_dssp TTCCEECHHHHHHHHHHHTCCC
T ss_pred cCCCCccHHHHHHHHHhhcCCc
Confidence 3788899999999999999985
No 103
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=22.47 E-value=60 Score=22.34 Aligned_cols=24 Identities=8% Similarity=0.170 Sum_probs=19.7
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
..+.+..+++++++.+.||+ +++.
T Consensus 92 e~n~~~s~~i~~~l~~~LgI-~~~r 115 (133)
T 3fwu_A 92 SEPEKVTSIVTAAITKECGI-VADR 115 (133)
T ss_dssp THHHHHHHHHHHHHHHHHCC-CGGG
T ss_pred HHHHHHHHHHHHHHHHHhCc-Chhh
Confidence 34678999999999999999 5544
No 104
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=22.34 E-value=66 Score=19.10 Aligned_cols=35 Identities=3% Similarity=0.036 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCc---------cCCCCccccCCCC
Q 033331 59 KPETVQKVCEIVRRQLALPAETE---------LTSESKFSALGGN 94 (121)
Q Consensus 59 k~et~ekV~~IV~~~l~l~d~~~---------It~eS~F~DLGaD 94 (121)
..++++.|++.|.+..+++ ++. +..+.++.|+|+.
T Consensus 23 ~~~tv~~lK~~i~~~~gip-~~~qrL~~~g~~L~d~~tL~~~~i~ 66 (78)
T 2faz_A 23 RLTKVEELRRKIQELFHVE-PGLQRLFYRGKQMEDGHTLFDYEVR 66 (78)
T ss_dssp TTCBHHHHHHHHHHHHCCC-GGGEEEEETTEECCTTCBTTTTTCC
T ss_pred CCCCHHHHHHHHHHHHCcC-hhhEEEEECCEECCCCCCHHHcCCC
Confidence 4568999999999999994 333 3444455566653
No 105
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=21.56 E-value=67 Score=20.97 Aligned_cols=23 Identities=9% Similarity=0.212 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.+.+..+.+++++.+.||+ +++.
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi-~~~r 94 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGV-PKNR 94 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCC-CGGG
T ss_pred HHHHHHHHHHHHHHHHhCc-Cccc
Confidence 3578889999999999999 5544
No 106
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=21.27 E-value=10 Score=24.88 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=34.3
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCCC--------CCccCCCCccccCCCChHHHHHH
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALPA--------ETELTSESKFSALGGNSDELRRR 101 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~d--------~~~It~eS~F~DLGaDSLD~VEI 101 (121)
.|+|. +...+.+|.+-.++..+++. ...|.++.+..|||+..=|++++
T Consensus 31 ~~~v~---~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv 86 (93)
T 2d07_B 31 QFKIK---RHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDV 86 (93)
T ss_dssp EEEEE---TTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred EEEEc---cCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 35553 33468999999999999942 33388888888898877766654
No 107
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.89 E-value=1e+02 Score=20.62 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=19.5
Q ss_pred ceeeecCChHHHHHHHHHHHHHHhCCCC
Q 033331 51 RFCVSCSAKPETVQKVCEIVRRQLALPA 78 (121)
Q Consensus 51 r~~v~c~ak~et~ekV~~IV~~~l~l~d 78 (121)
.+.+.+.. .+++..|++.|.+..++|.
T Consensus 31 ~~~lev~~-~~TV~~lK~kI~~k~gip~ 57 (100)
T 1wju_A 31 KNLLETRL-HITGRELRSKIAETFGLQE 57 (100)
T ss_dssp SEEEEEES-SSBHHHHHHHHHHHTTCCS
T ss_pred EEEEEeCC-cCHHHHHHHHHHHHHCcCH
Confidence 34444433 3689999999999999943
No 108
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*
Probab=20.81 E-value=1.1e+02 Score=30.41 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCccCCCCccccC-CCChHHHHHHHHHHHHhcCC-CC
Q 033331 61 ETVQKVCEIVRRQLALPAETELTSESKFSAL-GGNSDELRRRIWDWCRRGKL-PE 113 (121)
Q Consensus 61 et~ekV~~IV~~~l~l~d~~~It~eS~F~DL-GaDSLD~VEIVm~LEdeF~I-p~ 113 (121)
.-.+-|..||+..++. ..++|.+..+..|| |-=|----||++.|-.|||. |+
T Consensus 146 ~a~~~~~~l~a~~~k~-~~~~i~~~~~i~~l~~g~st~~ne~~gdl~~ef~~~~~ 199 (1887)
T 2uv8_A 146 KASLLLHVLVAHKLKK-SLDSIPMSKTIKDLVGGKXTVQNEILGDLGKEFGTTPE 199 (1887)
T ss_dssp CHHHHHHHHHHHTTTS-CTTTCCTTSCHHHHHTTCHHHHHHHHHHHHHHHCCCCS
T ss_pred CHHHHHHHHHHHHhcC-ChhhCCccccHHHHhCChhhhhhHHHHHHHHHhccCCC
Confidence 3567889999999999 88899988888887 88888899999999999984 54
No 109
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=20.26 E-value=75 Score=20.60 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 57 SAKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 57 ~ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
..|.+..+.|++.+.+.+|+ +++.
T Consensus 71 eqk~~l~~~i~~~l~~~lgi-~~~~ 94 (115)
T 2xcz_A 71 SRTQEVSELVCGHIEQNLGI-PADR 94 (115)
T ss_dssp THHHHHHHHHHHHHHHHHCC-CGGG
T ss_pred HHHHHHHHHHHHHHHHHhCc-Cccc
Confidence 34678999999999999999 5544
No 110
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=20.20 E-value=72 Score=21.89 Aligned_cols=23 Identities=0% Similarity=0.159 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHHHhCCCCCCc
Q 033331 58 AKPETVQKVCEIVRRQLALPAETE 81 (121)
Q Consensus 58 ak~et~ekV~~IV~~~l~l~d~~~ 81 (121)
.+.+..+.|++++.+.|++ +++.
T Consensus 93 ~n~~~s~~i~~~l~~~LgI-~~~r 115 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGI-PAER 115 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCC-CGGG
T ss_pred HHHHHHHHHHHHHHHHhCc-Chhh
Confidence 3568899999999999999 5544
Done!