BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033333
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FVV|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1
pdb|2Q9P|A Chain A, Human Diphosphoinositol Polyphosphate Phosphohydrolase 1,
Mg-F Complex
Length = 194
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Query: 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
+ P GG E +E AA+RE EEAGV G + L+G + + R H T Y++ L+V
Sbjct: 69 IVPGGGMEPEEEPSVAAVREVCEEAGVKGTL-GRLVGIFENQERKHRT----YVYVLIVT 123
Query: 62 DQLAEWPEK-NV-RSRKWMSVAEARKVCQH 89
+ L +W + N+ R R+W + +A KV Q+
Sbjct: 124 EVLEDWEDSVNIGRKREWFKIEDAIKVLQY 153
>pdb|2DUK|A Chain A, Crystal Structure Of Ms0616
pdb|2DUK|B Chain B, Crystal Structure Of Ms0616
Length = 138
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 7/89 (7%)
Query: 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
+ P GG E +E AA+RE EEAGV G + LLG + + R H T Y++ L V
Sbjct: 39 IVPGGGMEPEEEPGGAAVREVYEEAGVKGKL-GRLLGIFENQDRKHRT----YVYVLTVT 93
Query: 62 DQLAEWPEK-NV-RSRKWMSVAEARKVCQ 88
+ L +W + N+ R R+W V +A KV Q
Sbjct: 94 EILEDWEDSVNIGRKREWFKVEDAIKVLQ 122
>pdb|3MCF|A Chain A, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
pdb|3MCF|B Chain B, Crystal Structure Of Human Diphosphoinositol Polyphosphate
Phosphohydrolase 3-Alpha
Length = 136
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
+ P GG E +E AA+RE EEAGV G + LLG + + + +++ Y++ L V
Sbjct: 31 IVPGGGMEPEEEPGGAAVREVYEEAGVKGKL-GRLLGVFE---QNQDPEHRTYVYVLTVT 86
Query: 62 DQLAEWPEKNV---RSRKWMSVAEARKVCQ 88
+ L +W E +V R R+W V +A KV Q
Sbjct: 87 ELLEDW-EDSVSIGRKREWFKVEDAIKVLQ 115
>pdb|3I7U|A Chain A, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|B Chain B, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|C Chain C, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7U|D Chain D, Crystal Structure Of Ap4a Hydrolase (Aq_158) From Aquifex
Aeolicus Vf5
pdb|3I7V|A Chain A, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
pdb|3I7V|B Chain B, Crystal Structure Of Ap4a Hydrolase Complexed With Ap4a
(atp) (aq_158) From Aquifex Aeolicus Vf5
Length = 134
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF-KSRAHNTDYQGYMFPLLVQ 61
FPKG E E +E A+RE EE GV G + + +GE ++ + ++ + L+
Sbjct: 29 FPKGNIEPGEKPEETAVREVWEETGVKGEI-LDYIGEIHYWYTLKGERIFKTVKYYLMKY 87
Query: 62 DQLAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDR 98
+ P V+ K+ + EA+K+ ++ KE ++
Sbjct: 88 KEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDKEIFEK 124
>pdb|2QJT|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2QJT|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE COMPLEXED
With Amp And Mn Ion From Francisella Tularensis
pdb|2R5W|B Chain B, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
pdb|2R5W|A Chain A, Crystal Structure Of A Bifunctional Nmn
AdenylyltransferaseADP RIBOSE PYROPHOSPHATASE FROM
Francisella Tularensis
Length = 352
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 17/97 (17%)
Query: 4 PKGGWEIDESIQEAALRETIEEAGVTGIVE-------CELLGEWNFKS-RAHNTDYQGYM 55
P G E DE+I +A +RE EE + E CE + ++ +S R + G
Sbjct: 238 PGGFLECDETIAQAIIRELFEETNINLTHEQLAIAKRCEKVFDYPDRSVRGRTISHVG-- 295
Query: 56 FPLLVQDQLAEWPEKN----VRSRKWMSV-AEARKVC 87
L V DQ PE N + KW+S+ + + +C
Sbjct: 296 --LFVFDQWPSLPEINAADDAKDVKWISLGSNIKNIC 330
>pdb|2AZW|A Chain A, Crystal Structure Of The Mutt/nudix Family Protein From
Enterococcus Faecalis
Length = 148
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN--FKSRAHNTDY--QGYMFP 57
P G E E+ +EA RE +EE G++ + C LGE + F S T Y GY +
Sbjct: 44 FLPGGEIEGTETKEEAIHREVLEELGISVEIGC-YLGEADEYFYSNHRQTAYYNPGYFYV 102
Query: 58 LLVQDQLAEWPEKNVRSRKWMSVAEARKVCQ---HWWMKE 94
QL+E P + + W++ EA ++ + H W E
Sbjct: 103 ANTWRQLSE-PLERTNTLHWVAPEEAVRLLKRGSHRWAVE 141
>pdb|1VC8|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VC8|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1-Ap6a Complex
pdb|1VCD|A Chain A, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
pdb|1VCD|B Chain B, Crystal Structure Of A T.Thermophilus Hb8 Ap6a Hydrolase
Ndx1
Length = 126
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
+FPKG E ES++EAA+RE EE GV V L + + + L++
Sbjct: 27 VFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVHWF----LMR 82
Query: 62 DQLAEWPEKNVRSRKWMSVAEARKVCQH----WWMKEALDRLVM 101
+ A E+ + W S EAR + ++ AL+RL +
Sbjct: 83 GEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLPL 126
>pdb|1VC9|A Chain A, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
pdb|1VC9|B Chain B, Crystal Structure Of A T.thermophilus Hb8 Ap6a Hydrolase
E50q Mutant- Mg2+-atp Complex
Length = 126
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ 61
+FPKG E ES++EAA+RE E+ GV V L + + + L++
Sbjct: 27 VFPKGHPEPGESLEEAAVREVWEQTGVRAEVLLPLYPTRYVNPKGVEREVHWF----LMR 82
Query: 62 DQLAEWPEKNVRSRKWMSVAEARKVC 87
+ A E+ + W S EAR +
Sbjct: 83 GEGAPRLEEGMTGAGWFSPEEARALL 108
>pdb|3U53|A Chain A, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|B Chain B, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|C Chain C, Crystal Structure Of Human Ap4a Hydrolase
pdb|3U53|D Chain D, Crystal Structure Of Human Ap4a Hydrolase
Length = 155
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 22/105 (20%)
Query: 4 PKGGWEIDESIQEAALRETIEEAGVTG----IVECELLGEWNFKSRAHNTDYQGYMFPLL 59
PKG E E E ALRET EEAG+ I+E FK +Y P
Sbjct: 41 PKGHVEPGEDDLETALRETQEEAGIEAGQLTIIE-------GFKR---ELNYVARNKPKT 90
Query: 60 VQDQLAEWPEKNVRSR--------KWMSVAEARKVCQHWWMKEAL 96
V LAE + +V R +W+ + EA ++ Q MK AL
Sbjct: 91 VIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAAL 135
>pdb|3EXQ|A Chain A, Crystal Structure Of A Nudix Family Hydrolase From
Lactobacillus Brevis
Length = 161
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAG--VTGIVECELLGEWNFKSRAH 47
FP G E+ E AA+RE EE G ++G+ C EW R H
Sbjct: 41 FPGGHVEVGEPCATAAIREVFEETGLRLSGVTFCGTC-EWFDDDRQH 86
>pdb|2B06|A Chain A, Crystal Structure Of The MuttNUDIX FAMILY PROTEIN FROM
STREPTOCOCCUS Pneumoniae
Length = 155
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG 38
FP G E DE+ E+ +RE EE G+T I +L+G
Sbjct: 40 FPGGHVENDEAFAESVIREIYEETGLT-IQNPQLVG 74
>pdb|3GRN|A Chain A, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
pdb|3GRN|B Chain B, Crystal Structure Of Mutt Protein From Methanosarcina
Mazei Go1
Length = 153
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFK 43
P G DES++E RE EE G+T +V ++ G+ NF+
Sbjct: 40 LPGGKVNPDESLKEGVAREVWEETGIT-MVPGDIAGQVNFE 79
>pdb|3R03|A Chain A, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
pdb|3R03|B Chain B, The Crystal Structure Of Nudix Hydrolase From
Rhodospirillum Rubrum
Length = 144
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT 49
FP G E E+ + A +RE EE GV C L F S +++T
Sbjct: 39 FPGGKLEPGETPEAALVRELAEELGVDTRASC--LAPLAFASHSYDT 83
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAG 27
FPKG + DES + A+RE EE G
Sbjct: 125 FPKGKIDKDESDVDCAIREVYEETG 149
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAG 27
FPKG + DES + A+RE EE G
Sbjct: 130 FPKGKIDKDESDVDCAIREVYEETG 154
>pdb|2B0V|A Chain A, Nudix Hydrolase From Nitrosomonas Europaea
Length = 153
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 4 PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMF 56
P G E ESI +A RE +EE G + + E L G +++ ++ T Y + F
Sbjct: 38 PAGHLEPGESIIQACSREVLEETGHSFLPEV-LTGIYHWTCASNGTTYLRFTF 89
>pdb|1XSA|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant)
pdb|1XSB|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (E63a Mutant) In Complex With Atp. No Atp
Restraints Included
pdb|1XSC|A Chain A, Structure Of The Nudix Enzyme Ap4a Hydrolase From Homo
Sapiens (e63a Mutant) In Complex With Atp
Length = 153
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 22/105 (20%)
Query: 4 PKGGWEIDESIQEAALRETIEEAGVTG----IVECELLGEWNFKSRAHNTDYQGYMFPLL 59
PKG E E E ALR T EEAG+ I+E FK +Y P
Sbjct: 46 PKGHVEPGEDDLETALRATQEEAGIEAGQLTIIE-------GFKR---ELNYVARNKPKT 95
Query: 60 VQDQLAEWPEKNVRSR--------KWMSVAEARKVCQHWWMKEAL 96
V LAE + +V R +W+ + EA ++ Q MK AL
Sbjct: 96 VIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEMKAAL 140
>pdb|2KDV|A Chain A, Solution Structure Of Rna Pyrophosphohydrolase Rpph From
Escherichia Coli
Length = 164
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVT 29
FP+GG ES ++A RE EE G++
Sbjct: 35 FPQGGINPGESAEQAMYRELFEEVGLS 61
>pdb|3H95|A Chain A, Crystal Structure Of The Nudix Domain Of Nudt6
Length = 199
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGV 28
FP G E +E I + A+RE EE G+
Sbjct: 56 FPGGLSEPEEDIGDTAVREVFEETGI 81
>pdb|1F3Y|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius L.
pdb|1JKN|A Chain A, Solution Structure Of The Nudix Enzyme Diadenosine
Tetraphosphate Hydrolase From Lupinus Angustifolius
Complexed With Atp
Length = 165
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 15/75 (20%)
Query: 4 PKGGWEIDESIQEAALRETIEEAGVTG---IVECELLGEWNFKSRAH-------NTDYQG 53
P+GG + E + AA+RE EE GVT I E ++F + +D++G
Sbjct: 43 PQGGIDEGEDPRNAAIRELREETGVTSAEVIAEVPYWLTYDFPPKVREKLNIQWGSDWKG 102
Query: 54 -----YMFPLLVQDQ 63
++F QDQ
Sbjct: 103 QAQKWFLFKFTGQDQ 117
>pdb|3DKU|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3DKU|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|A Chain A, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|B Chain B, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|C Chain C, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|D Chain D, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|E Chain E, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|F Chain F, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|G Chain G, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|H Chain H, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|I Chain I, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|J Chain J, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|K Chain K, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
pdb|3SHD|L Chain L, Crystal Structure Of Nudix Hydrolase Orf153, Ymfb, From
Escherichia Coli K-1
Length = 153
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 4 PKGGWEIDESIQEAALRETIEEAGVTG 30
P G E DE++ EAA RE EE G++
Sbjct: 34 PAGHLEADETLVEAAARELWEETGISA 60
>pdb|2DSB|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|C Chain C, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
pdb|2DSB|D Chain D, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5
Length = 227
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 34
FP G + E+ + AALRE EE G G I EC
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|3BM4|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
pdb|3BM4|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Ampcpr
Length = 210
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 34
FP G + E+ + AALRE EE G G I EC
Sbjct: 94 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 126
>pdb|2DSC|A Chain A, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSC|B Chain B, Crystal Structure Of Human Adp-ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Adp-ribose
pdb|2DSD|A Chain A, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
pdb|2DSD|B Chain B, Crystal Structure Of Human Adp-Ribose Pyrophosphatase
Nudt5 In Complex With Magnesium And Amp
Length = 212
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 34
FP G + E+ + AALRE EE G G I EC
Sbjct: 96 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 128
>pdb|3AC9|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3AC9|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgdp
And Manganese
pdb|3L85|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
pdb|3L85|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dgmp
Length = 195
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 34
FP G + E+ + AALRE EE G G I EC
Sbjct: 81 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 113
>pdb|3ACA|A Chain A, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
pdb|3ACA|B Chain B, Crystal Structure Of Human Nudt5 Complexed With 8-Oxo-Dadp
And Manganese
Length = 196
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTG-IVEC 34
FP G + E+ + AALRE EE G G I EC
Sbjct: 82 FPAGLIDDGETPEAAALRELEEETGYKGDIAEC 114
>pdb|1PPX|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUN|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUQ|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1PUS|A Chain A, Solution Structure Of The Mutt Pyrophosphohydrolase
Complexed With Mg(2+) And 8-Oxo-Dgmp, A Tightly-Bound
Product
pdb|1MUT|A Chain A, Nmr Study Of Mutt Enzyme, A Nucleoside Triphosphate
Pyrophosphohydrolase
pdb|1TUM|A Chain A, Mutt Pyrophosphohydrolase-Metal-Nucleotide-Metal
Complex, Nmr, 16 Structures
pdb|3A6S|A Chain A, Crystal Structure Of The Mutt Protein
pdb|3A6S|B Chain B, Crystal Structure Of The Mutt Protein
pdb|3A6T|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp Complex
pdb|3A6U|A Chain A, Crystal Structure Of Mutt-8-Oxo-Dgmp-Mn(Ii) Complex
pdb|3A6V|A Chain A, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound
Holo Form
pdb|3A6V|B Chain B, Crystal Structure Of The Mutt Protein In Mn(Ii) Bound
Holo Form
Length = 129
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVT 29
FP G E+ E+ ++A +RE EE G+T
Sbjct: 35 FPGGKIEMGETPEQAVVRELQEEVGIT 61
>pdb|2B9S|A Chain A, Crystal Structure Of Heterodimeric L. Donovani
Topoisomerase I-Vanadate-Dna Complex
Length = 432
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 96 LDRLVMRLTSQQLHGKEDSVGTCSL 120
+DRL +R+ +++ + D+VG CSL
Sbjct: 284 IDRLALRVGNEKGEDEADTVGCCSL 308
>pdb|3SON|A Chain A, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc
19115) At 1.70 A Resolution
pdb|3SON|B Chain B, Crystal Structure Of A Hypothetical Nudix Hydrolase
(Lmof2365_2679) From Listeria Monocytogenes (Atcc
19115) At 1.70 A Resolution
Length = 149
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFP 57
F GG E +E+I E A RE+IEE + V+ L H + + Y+ P
Sbjct: 35 FVAGGGEDEEAISETAKRESIEELNLDVDVKXYSLDSHASIPNFHFSFNKPYVVP 89
>pdb|3FJY|A Chain A, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
pdb|3FJY|B Chain B, Crystal Structure Of A Probable Mutt1 Protein From
Bifidobacterium Adolescentis
Length = 364
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 31/143 (21%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVT---GIVECEL---LGEWNFKSR-AHN--TDYQG 53
+PKG E +E+ + AA+RE EE G G CE+ L E K+R +H+ D +
Sbjct: 53 WPKGKLEQNETHRHAAVREIGEETGSPVKLGPYLCEVEYPLSEEGKKTRHSHDCTADTKH 112
Query: 54 YMF----PLLVQDQ---------LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 100
++ P+ D + + W+SV EARK+ H K+ L V
Sbjct: 113 TLYWXAQPISADDAEHLLDAFGPVHRADVGEINDIVWVSVREARKILSHSTDKDTLAVFV 172
Query: 101 MRL-----TSQQL----HGKEDS 114
R+ T+Q L H K +S
Sbjct: 173 DRVQEGAATAQNLLIVRHAKAES 195
>pdb|2KDW|A Chain A, Solution Structure Of Rpph Mutant E53a From Escherichia
Coli
Length = 164
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVT 29
FP+GG ES ++A R EE G++
Sbjct: 35 FPQGGINPGESAEQAMYRALFEEVGLS 61
>pdb|1SJY|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 From
Deinococcus Radiodurans
pdb|1SOI|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complex
With Sm+3
pdb|1SU2|A Chain A, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SU2|B Chain B, Crystal Structure Of The Nudix Hydrolase Dr1025 In
Complex With Atp
pdb|1SZ3|A Chain A, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
pdb|1SZ3|B Chain B, Crystal Structure Of Nudix Hydrolase Dr1025 In Complexed
With Gnp And Mg+2
Length = 159
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 3 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW 40
P G E E+ Q+AA+RE EE G+ + + LG +
Sbjct: 47 IPSGAVEDGENPQDAAVREACEETGLR-VRPVKFLGAY 83
>pdb|1MB1|A Chain A, Mbp1 From Saccharomyces Cerevisiae
Length = 130
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 25 EAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE 66
+A T I+E E+L E + K + YQG PL + QLAE
Sbjct: 47 KAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAE 88
>pdb|1L3G|A Chain A, Nmr Structure Of The Dna-Binding Domain Of Cell Cycle
Protein, Mbp1(2-124) From Saccharomyces Cerevisiae
Length = 136
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 25 EAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE 66
+A T I+E E+L E + K + YQG PL + QLAE
Sbjct: 46 KAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAE 87
>pdb|1BM8|A Chain A, Dna-Binding Domain Of Mbp1
Length = 99
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 25 EAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE 66
+A T I+E E+L E + K + YQG PL + QLAE
Sbjct: 44 KAKRTRILEKEVLKETHEKVQGGFGKYQGTWVPLNIAKQLAE 85
>pdb|3O8S|A Chain A, Crystal Structure Of An Adp-Ribose Pyrophosphatase
(Ssu98_1448) From Streptococcus Suis 89-1591 At 2.27 A
Resolution
Length = 206
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Query: 6 GGW-EIDESIQEAALRETIEEAGV 28
GGW ++D+S+++ ++E EEAG+
Sbjct: 97 GGWCDVDQSVKDNVVKEVKEEAGL 120
>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
pdb|3GWY|B Chain B, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
From Bacteroides Fragilis
Length = 140
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 3 FPKGGWEIDESIQEAALRETIEE 25
FP G E ES+QEA RE +EE
Sbjct: 38 FPGGKVEEGESLQEALQREIMEE 60
>pdb|1KT9|A Chain A, Crystal Structure Of C. Elegans Ap4a Hydrolase
pdb|1KTG|A Chain A, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
pdb|1KTG|B Chain B, Crystal Structure Of A C. Elegans Ap4a Hydrolase Binary
Complex
Length = 138
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 4 PKGGWEIDESIQEAALRETIEEAGVT 29
PKG + E +AA+RET EEA +T
Sbjct: 35 PKGHVDPGEDEWQAAIRETKEEANIT 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,617,640
Number of Sequences: 62578
Number of extensions: 127705
Number of successful extensions: 316
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 280
Number of HSP's gapped (non-prelim): 49
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)