Query 033333
Match_columns 121
No_of_seqs 110 out of 1492
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 12:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03673 Ap6A_hydrolase Diadeno 99.9 4.4E-21 9.5E-26 120.5 11.3 99 1-100 29-130 (131)
2 cd04666 Nudix_Hydrolase_9 Memb 99.9 5.2E-21 1.1E-25 119.7 9.9 91 1-92 28-121 (122)
3 cd04684 Nudix_Hydrolase_25 Con 99.8 1.8E-20 3.9E-25 117.3 10.1 95 1-96 27-127 (128)
4 PRK09438 nudB dihydroneopterin 99.8 1E-20 2.2E-25 121.7 9.1 101 1-103 33-146 (148)
5 cd03428 Ap4A_hydrolase_human_l 99.8 2.7E-20 5.8E-25 117.1 10.3 98 1-99 29-128 (130)
6 cd04695 Nudix_Hydrolase_36 Mem 99.8 6.3E-20 1.4E-24 115.9 10.3 101 1-102 29-130 (131)
7 cd04679 Nudix_Hydrolase_20 Mem 99.8 2.1E-20 4.5E-25 117.0 7.8 87 1-88 30-117 (125)
8 cd03675 Nudix_Hydrolase_2 Cont 99.8 1.5E-19 3.2E-24 114.3 11.3 99 1-100 26-128 (134)
9 cd03427 MTH1 MutT homolog-1 (M 99.8 3.5E-20 7.5E-25 117.6 8.1 98 1-100 28-125 (137)
10 cd04700 DR1025_like DR1025 fro 99.8 5.5E-20 1.2E-24 117.7 8.7 91 1-93 41-132 (142)
11 PRK15434 GDP-mannose mannosyl 99.8 1.9E-19 4.1E-24 117.1 9.5 94 1-95 45-147 (159)
12 cd03674 Nudix_Hydrolase_1 Memb 99.8 2.1E-19 4.6E-24 114.4 9.5 99 1-100 28-137 (138)
13 cd04680 Nudix_Hydrolase_21 Mem 99.8 1.2E-19 2.5E-24 112.6 8.0 86 1-89 25-111 (120)
14 cd04664 Nudix_Hydrolase_7 Memb 99.8 1.8E-19 3.8E-24 113.4 8.6 95 1-96 30-128 (129)
15 cd04673 Nudix_Hydrolase_15 Mem 99.8 2.7E-19 5.7E-24 111.2 9.1 89 1-91 27-119 (122)
16 cd03430 GDPMH GDP-mannose glyc 99.8 5.1E-19 1.1E-23 113.5 9.7 85 1-86 40-132 (144)
17 cd04681 Nudix_Hydrolase_22 Mem 99.8 2.3E-19 5E-24 112.8 8.0 97 1-98 29-128 (130)
18 cd04688 Nudix_Hydrolase_29 Mem 99.8 3.7E-19 8E-24 111.5 8.7 89 1-90 25-122 (126)
19 cd04696 Nudix_Hydrolase_37 Mem 99.8 8.1E-19 1.8E-23 109.8 9.9 93 1-95 28-123 (125)
20 KOG2839 Diadenosine and diphos 99.8 3.1E-19 6.7E-24 111.9 7.6 104 1-104 38-143 (145)
21 COG1051 ADP-ribose pyrophospha 99.8 3.2E-19 7E-24 114.5 8.0 86 1-87 37-123 (145)
22 PF00293 NUDIX: NUDIX domain; 99.8 7.8E-19 1.7E-23 110.3 9.4 99 1-100 32-133 (134)
23 cd04661 MRP_L46 Mitochondrial 99.8 1.2E-18 2.5E-23 110.4 10.0 87 1-88 28-122 (132)
24 cd03429 NADH_pyrophosphatase N 99.8 8.4E-19 1.8E-23 110.8 8.5 81 1-86 27-107 (131)
25 cd04687 Nudix_Hydrolase_28 Mem 99.8 1.2E-18 2.6E-23 109.5 8.6 89 1-90 27-125 (128)
26 cd04667 Nudix_Hydrolase_10 Mem 99.8 1.1E-18 2.4E-23 107.4 8.0 87 1-94 23-109 (112)
27 cd04676 Nudix_Hydrolase_17 Mem 99.8 1.4E-18 3.1E-23 108.5 8.1 96 1-97 27-128 (129)
28 cd04689 Nudix_Hydrolase_30 Mem 99.8 2.7E-18 5.7E-23 107.5 9.2 83 1-84 25-112 (125)
29 cd04678 Nudix_Hydrolase_19 Mem 99.8 3E-18 6.6E-23 107.7 9.0 85 1-86 30-117 (129)
30 PLN02325 nudix hydrolase 99.8 1.4E-18 2.9E-23 111.6 7.5 87 1-88 36-127 (144)
31 cd04683 Nudix_Hydrolase_24 Mem 99.8 1.8E-18 3.9E-23 107.4 7.8 85 1-87 28-115 (120)
32 PRK15472 nucleoside triphospha 99.8 3.8E-18 8.3E-23 108.9 9.5 96 1-98 33-137 (141)
33 cd04672 Nudix_Hydrolase_14 Mem 99.8 2E-18 4.4E-23 107.8 8.0 90 1-92 26-118 (123)
34 cd04690 Nudix_Hydrolase_31 Mem 99.8 1.2E-18 2.7E-23 107.8 6.2 85 1-88 25-112 (118)
35 cd03672 Dcp2p mRNA decapping e 99.8 6.1E-18 1.3E-22 108.7 9.4 84 1-88 27-113 (145)
36 cd04669 Nudix_Hydrolase_11 Mem 99.8 3.8E-18 8.3E-23 106.4 8.2 83 1-90 27-118 (121)
37 cd04677 Nudix_Hydrolase_18 Mem 99.8 4.1E-18 8.8E-23 107.3 8.3 88 1-89 32-125 (132)
38 cd03671 Ap4A_hydrolase_plant_l 99.8 1.2E-17 2.6E-22 107.4 10.3 98 1-100 29-144 (147)
39 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 3.3E-18 7.1E-23 108.5 7.6 88 1-91 31-120 (137)
40 cd04670 Nudix_Hydrolase_12 Mem 99.8 6.4E-18 1.4E-22 106.0 8.7 83 1-86 29-113 (127)
41 cd04691 Nudix_Hydrolase_32 Mem 99.8 3.9E-18 8.4E-23 105.8 7.3 81 1-87 29-109 (117)
42 cd04671 Nudix_Hydrolase_13 Mem 99.8 1.9E-18 4.1E-23 108.2 5.7 84 1-90 28-114 (123)
43 cd04693 Nudix_Hydrolase_34 Mem 99.7 9.2E-18 2E-22 105.3 7.4 87 1-91 30-118 (127)
44 PRK15393 NUDIX hydrolase YfcD; 99.7 2.5E-17 5.5E-22 109.3 9.7 101 2-106 69-171 (180)
45 cd04697 Nudix_Hydrolase_38 Mem 99.7 2E-17 4.4E-22 103.8 8.5 86 1-90 30-116 (126)
46 cd04682 Nudix_Hydrolase_23 Mem 99.7 1.5E-17 3.2E-22 103.7 7.7 85 1-88 31-116 (122)
47 PRK10546 pyrimidine (deoxy)nuc 99.7 3.6E-17 7.8E-22 103.4 9.6 97 1-102 32-128 (135)
48 PRK00241 nudC NADH pyrophospha 99.7 2.1E-17 4.6E-22 114.9 8.9 88 1-93 158-245 (256)
49 cd03426 CoAse Coenzyme A pyrop 99.7 1.1E-17 2.3E-22 108.8 6.7 83 1-86 34-118 (157)
50 PRK11762 nudE adenosine nucleo 99.7 2.5E-17 5.5E-22 109.7 8.2 91 1-94 76-167 (185)
51 cd04686 Nudix_Hydrolase_27 Mem 99.7 4.1E-17 8.8E-22 103.1 8.6 85 1-86 24-119 (131)
52 cd04511 Nudix_Hydrolase_4 Memb 99.7 4.1E-17 8.8E-22 102.9 7.3 78 1-84 40-117 (130)
53 cd04692 Nudix_Hydrolase_33 Mem 99.7 5.9E-17 1.3E-21 103.8 7.9 87 1-88 35-129 (144)
54 PRK05379 bifunctional nicotina 99.7 1.5E-16 3.2E-21 114.7 10.3 99 1-100 230-338 (340)
55 cd02885 IPP_Isomerase Isopente 99.7 1.3E-16 2.8E-21 104.5 9.1 88 1-90 60-152 (165)
56 cd04699 Nudix_Hydrolase_39 Mem 99.7 2E-16 4.4E-21 99.0 9.4 85 1-88 31-116 (129)
57 PRK00714 RNA pyrophosphohydrol 99.7 2E-16 4.2E-21 102.8 9.5 103 1-105 34-153 (156)
58 TIGR00052 nudix-type nucleosid 99.7 6.5E-17 1.4E-21 107.7 7.4 92 1-95 79-174 (185)
59 PRK10729 nudF ADP-ribose pyrop 99.7 3.4E-16 7.3E-21 105.5 9.0 91 1-94 84-179 (202)
60 PRK10776 nucleoside triphospha 99.7 5.6E-16 1.2E-20 96.9 9.0 94 1-99 33-126 (129)
61 TIGR02705 nudix_YtkD nucleosid 99.7 1.5E-15 3.3E-20 98.3 10.5 98 1-104 47-151 (156)
62 cd03425 MutT_pyrophosphohydrol 99.7 1.1E-15 2.3E-20 94.7 9.3 93 1-98 30-122 (124)
63 cd04665 Nudix_Hydrolase_8 Memb 99.7 3.9E-16 8.4E-21 97.0 6.9 80 1-83 23-102 (118)
64 PRK03759 isopentenyl-diphospha 99.7 7.9E-16 1.7E-20 102.4 8.7 89 1-90 64-156 (184)
65 cd02883 Nudix_Hydrolase Nudix 99.6 6.2E-16 1.3E-20 95.1 7.2 87 1-88 27-114 (123)
66 cd03676 Nudix_hydrolase_3 Memb 99.6 8.1E-16 1.8E-20 102.0 7.9 92 2-94 68-166 (180)
67 TIGR00586 mutt mutator mutT pr 99.6 1.8E-15 4E-20 94.6 8.2 93 1-98 33-125 (128)
68 cd04694 Nudix_Hydrolase_35 Mem 99.6 1.4E-15 3E-20 97.5 7.6 88 1-89 31-134 (143)
69 cd04685 Nudix_Hydrolase_26 Mem 99.6 1.6E-15 3.5E-20 96.1 7.8 85 1-86 30-123 (133)
70 cd04663 Nudix_Hydrolase_6 Memb 99.6 1.2E-15 2.6E-20 95.5 5.8 88 1-90 26-120 (126)
71 PRK10707 putative NUDIX hydrol 99.6 3.5E-15 7.6E-20 99.7 8.3 85 1-88 62-148 (190)
72 cd04662 Nudix_Hydrolase_5 Memb 99.6 3.1E-15 6.7E-20 93.5 7.4 31 1-31 35-65 (126)
73 cd03670 ADPRase_NUDT9 ADP-ribo 99.6 6.6E-15 1.4E-19 97.8 9.3 99 1-102 62-185 (186)
74 PRK15009 GDP-mannose pyrophosp 99.6 7.3E-15 1.6E-19 98.2 8.2 91 1-95 81-175 (191)
75 TIGR02150 IPP_isom_1 isopenten 99.6 1.2E-14 2.7E-19 94.5 8.4 86 1-90 57-146 (158)
76 PRK08999 hypothetical protein; 99.5 1.5E-13 3.4E-18 98.0 8.6 94 1-99 34-127 (312)
77 PLN02709 nudix hydrolase 99.5 1.9E-13 4.2E-18 92.8 7.6 83 1-86 69-155 (222)
78 cd04674 Nudix_Hydrolase_16 Mem 99.5 1.9E-13 4.1E-18 84.9 6.8 78 1-81 31-110 (118)
79 PLN03143 nudix hydrolase; Prov 99.5 1.2E-12 2.6E-17 92.3 11.1 93 1-95 160-274 (291)
80 COG0494 MutT NTP pyrophosphohy 99.4 1.4E-12 3E-17 82.2 8.3 88 1-89 38-137 (161)
81 COG2816 NPY1 NTP pyrophosphohy 99.4 4.3E-13 9.4E-18 93.1 3.8 81 3-88 172-252 (279)
82 PLN02552 isopentenyl-diphospha 99.2 2.4E-10 5.3E-15 79.1 10.7 87 14-101 117-225 (247)
83 PLN02791 Nudix hydrolase homol 99.1 4.7E-10 1E-14 87.8 10.5 87 1-88 63-160 (770)
84 KOG3084 NADH pyrophosphatase I 99.1 4.1E-12 8.9E-17 89.1 -0.8 83 1-86 215-298 (345)
85 KOG3041 Nucleoside diphosphate 99.1 1E-09 2.2E-14 72.5 8.0 84 2-86 106-194 (225)
86 COG4119 Predicted NTP pyrophos 99.0 3.3E-09 7E-14 65.7 7.3 96 1-103 38-151 (161)
87 KOG3069 Peroxisomal NUDIX hydr 98.9 3.3E-09 7.2E-14 71.9 5.7 84 2-86 77-163 (246)
88 KOG0648 Predicted NUDIX hydrol 98.7 2.1E-09 4.6E-14 75.4 0.4 85 1-87 145-232 (295)
89 PLN02839 nudix hydrolase 98.7 1.4E-07 3.1E-12 68.2 8.1 85 3-88 239-329 (372)
90 cd03431 DNA_Glycosylase_C DNA 98.6 4.7E-07 1E-11 55.4 9.0 85 1-96 31-115 (118)
91 COG1443 Idi Isopentenyldiphosp 98.5 6.5E-07 1.4E-11 58.4 6.8 82 5-89 68-156 (185)
92 KOG4195 Transient receptor pot 98.0 2.5E-05 5.5E-10 52.9 5.8 27 1-27 152-178 (275)
93 COG4112 Predicted phosphoester 97.7 0.00046 9.9E-09 44.8 7.9 81 5-86 97-187 (203)
94 KOG2937 Decapping enzyme compl 97.5 3.9E-05 8.5E-10 54.7 1.3 79 1-83 108-189 (348)
95 PF14815 NUDIX_4: NUDIX domain 97.3 0.0004 8.6E-09 42.5 4.1 87 1-95 26-112 (114)
96 KOG4432 Uncharacterized NUDIX 97.1 0.0022 4.8E-08 45.6 6.2 79 2-81 82-160 (405)
97 KOG0142 Isopentenyl pyrophosph 96.9 0.007 1.5E-07 40.7 7.1 74 12-88 103-185 (225)
98 KOG4432 Uncharacterized NUDIX 96.4 0.01 2.3E-07 42.3 5.6 89 2-92 287-382 (405)
99 KOG4313 Thiamine pyrophosphoki 95.2 0.063 1.4E-06 37.4 5.2 83 4-86 170-258 (306)
100 PF13869 NUDIX_2: Nucleotide h 94.8 0.15 3.3E-06 34.1 6.0 83 1-85 70-169 (188)
101 KOG4548 Mitochondrial ribosoma 94.5 0.16 3.5E-06 35.4 5.8 87 1-88 154-249 (263)
102 KOG1689 mRNA cleavage factor I 91.1 0.26 5.6E-06 32.5 2.8 26 2-27 97-122 (221)
103 PF03487 IL13: Interleukin-13; 85.7 0.92 2E-05 22.4 2.0 22 5-26 15-36 (43)
104 PRK10880 adenine DNA glycosyla 83.5 6.3 0.00014 29.1 6.5 83 1-96 259-341 (350)
105 PF14443 DBC1: DBC1 81.5 8.6 0.00019 24.2 5.6 23 12-34 40-62 (126)
106 PF07026 DUF1317: Protein of u 78.2 1.7 3.7E-05 23.4 1.5 12 1-12 24-35 (60)
107 KOG0648 Predicted NUDIX hydrol 61.7 5.8 0.00013 28.6 1.7 33 1-34 57-89 (295)
108 KOG2937 Decapping enzyme compl 60.8 2.4 5.2E-05 30.9 -0.3 32 1-32 266-297 (348)
109 PF13014 KH_3: KH domain 55.7 13 0.00027 18.2 2.0 17 18-34 12-28 (43)
110 PF09505 Dimeth_Pyl: Dimethyla 53.0 9.4 0.0002 28.1 1.6 23 8-30 409-431 (466)
111 COG0828 RpsU Ribosomal protein 51.3 14 0.0003 20.6 1.7 27 3-29 1-29 (67)
112 PF14044 NETI: NETI protein 50.0 18 0.00039 19.4 2.0 25 7-32 3-27 (57)
113 COG1707 ACT domain-containing 46.7 17 0.00038 24.2 2.0 23 17-40 158-180 (218)
114 PRK07198 hypothetical protein; 45.7 13 0.00029 28.0 1.4 29 1-30 175-203 (418)
115 cd02393 PNPase_KH Polynucleoti 43.7 25 0.00054 18.8 2.1 17 18-34 23-39 (61)
116 COG4353 Uncharacterized conser 42.0 28 0.0006 23.0 2.3 14 1-14 129-142 (192)
117 PF03068 PAD: Protein-arginine 30.4 42 0.00091 25.3 2.0 32 4-35 323-354 (385)
118 PF10921 DUF2710: Protein of u 30.3 63 0.0014 19.3 2.4 24 4-27 5-32 (109)
119 smart00250 PLEC Plectin repeat 29.1 23 0.0005 16.9 0.4 18 5-22 11-32 (38)
120 PF00013 KH_1: KH domain syndr 27.6 64 0.0014 16.7 2.0 16 18-33 21-36 (60)
121 PF08398 Parvo_coat_N: Parvovi 26.2 88 0.0019 17.2 2.3 19 4-22 9-29 (64)
122 cd02395 SF1_like-KH Splicing f 26.0 62 0.0013 20.1 2.0 17 18-34 27-43 (120)
123 COG4274 Uncharacterized conser 25.3 1.4E+02 0.0031 18.1 3.3 30 12-41 27-57 (104)
124 PF08734 GYD: GYD domain; Int 24.9 1.1E+02 0.0023 17.8 2.8 27 13-39 19-45 (91)
125 PRK00270 rpsU 30S ribosomal pr 23.3 73 0.0016 17.4 1.7 26 4-29 2-29 (64)
126 cd02394 vigilin_like_KH K homo 22.9 74 0.0016 16.6 1.7 17 18-34 21-37 (62)
127 KOG3904 Predicted hydrolase RP 22.1 40 0.00087 23.1 0.6 19 12-30 23-41 (209)
128 PF09999 DUF2240: Uncharacteri 22.0 40 0.00087 21.7 0.6 14 74-87 30-43 (144)
129 PF10820 DUF2543: Protein of u 21.3 82 0.0018 17.7 1.6 24 9-32 44-67 (81)
130 PF03479 DUF296: Domain of unk 20.6 2.1E+02 0.0047 17.4 3.7 31 7-39 7-37 (120)
No 1
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.87 E-value=4.4e-21 Score=120.52 Aligned_cols=99 Identities=24% Similarity=0.245 Sum_probs=77.2
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC--CCeeEEEEEEeEeccccccc-ccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH--NTDYQGYMFPLLVQDQLAEW-PEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W 77 (121)
|.||||++++||++++||.||++||||+.+..... ++.+.+..... ......++|.+......... ...|..+++|
T Consensus 29 w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W 107 (131)
T cd03673 29 WSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDP-LGTIRYWFSSSGKRVHKTVHWWLMRALGGEFTPQPDEEVDEVRW 107 (131)
T ss_pred ccCCCCccCCCCCHHHHHHHHHhhhhCCceEecce-EEEEEEeccCCCCCcceEEEEEEEEEcCCCcccCCCCcEEEEEE
Confidence 89999999999999999999999999999988776 77766544431 23345566777665443322 3467788999
Q ss_pred EeHHHHHHhcCchhHHHHHHHHH
Q 033333 78 MSVAEARKVCQHWWMKEALDRLV 100 (121)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~~ 100 (121)
++++++.++..++..+.++..+.
T Consensus 108 ~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 108 LPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred cCHHHHHHHcCCHhHHHHHHHhh
Confidence 99999999998898888887764
No 2
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.86 E-value=5.2e-21 Score=119.67 Aligned_cols=91 Identities=42% Similarity=0.653 Sum_probs=71.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeee-cceeeeeEeeeCCC--CCeeEEEEEEeEecccccccccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVE-CELLGEWNFKSRAH--NTDYQGYMFPLLVQDQLAEWPEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~-~~~l~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W 77 (121)
|.||||+++.||++.+||+||++||||+.+... .+ ++.+.+..+.. ......++|.+.........+..+..+++|
T Consensus 28 w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W 106 (122)
T cd04666 28 WIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRP-LGRFEYRKRSKNRPPRCEVAVFPLEVTEELDEWPEMHQRKRKW 106 (122)
T ss_pred EECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceE-EEEEEeeecCCCCCceEEEEEEEEEEeccccCCcccCceEEEE
Confidence 899999999999999999999999999998776 66 88887665532 234556778777665443334456678999
Q ss_pred EeHHHHHHhcCchhH
Q 033333 78 MSVAEARKVCQHWWM 92 (121)
Q Consensus 78 ~~~~~l~~~~~~~~~ 92 (121)
++++++.+++.++.+
T Consensus 107 ~~~~ea~~~~~~~~~ 121 (122)
T cd04666 107 FSPEEAALLVEEPEL 121 (122)
T ss_pred ecHHHHHHhcCChhh
Confidence 999999999887743
No 3
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.85 E-value=1.8e-20 Score=117.27 Aligned_cols=95 Identities=23% Similarity=0.221 Sum_probs=71.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCC----CeeEEEEEEeEeccccc--ccccCCcce
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN----TDYQGYMFPLLVQDQLA--EWPEKNVRS 74 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~----~~~~~~~f~~~~~~~~~--~~~~~e~~~ 74 (121)
|.+|||++++||++++||+||++||||+.+..... ++.+.+...... .....++|.+....... ....++..+
T Consensus 27 w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~~~ 105 (128)
T cd04684 27 WDLPGGGIEPGESPEEALHREVLEETGLTVEIGRR-LGSASRYFYSPDGDYDAHHLCVFYDARVVGGALPVQEPGEDSHG 105 (128)
T ss_pred EECCCcccCCCCCHHHHHHHHHHHHhCcEeeccee-eeEEEEEEECCCCCeeccEEEEEEEEEEecCccccCCCCCCcee
Confidence 89999999999999999999999999999887776 777654332221 24456778777665443 234456778
Q ss_pred eEEEeHHHHHHhcCchhHHHHH
Q 033333 75 RKWMSVAEARKVCQHWWMKEAL 96 (121)
Q Consensus 75 ~~W~~~~~l~~~~~~~~~~~~~ 96 (121)
++|++++++......+....++
T Consensus 106 ~~W~~~~~l~~~~~~~~~~~a~ 127 (128)
T cd04684 106 AAWLPLDEAIERLLSPLVLWAV 127 (128)
T ss_pred eEEECHHHhhccCCCHHHHHhh
Confidence 9999999999887777655443
No 4
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.85 E-value=1e-20 Score=121.74 Aligned_cols=101 Identities=23% Similarity=0.314 Sum_probs=72.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceee--eecceee-----eeE------eeeCCCCCeeEEEEEEeEeccccccc
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI--VECELLG-----EWN------FKSRAHNTDYQGYMFPLLVQDQLAEW 67 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~--~~~~~l~-----~~~------~~~~~~~~~~~~~~f~~~~~~~~~~~ 67 (121)
|.+|||++++|||+.+||+||++||||+.+. ...+ ++ .+. +.+..+..+...++|.+........
T Consensus 33 W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~- 110 (148)
T PRK09438 33 WQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTL-IDCQRSIEYEIFPHWRHRYAPGVTRNTEHWFCLALPHERPV- 110 (148)
T ss_pred EeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceee-cccccccccccchhhhhccccccCCceeEEEEEecCCCCcc-
Confidence 8999999999999999999999999999973 2221 11 111 1111122234567788775543222
Q ss_pred ccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHh
Q 033333 68 PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 103 (121)
Q Consensus 68 ~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 103 (121)
..+|..+++|++++++.++...+..+.++..+.+++
T Consensus 111 ~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~~~~ 146 (148)
T PRK09438 111 VLTEHLAYQWLDAREAAALTKSWSNAEAIEQLVIRL 146 (148)
T ss_pred ccCcccceeeCCHHHHHHHhcChhHHHHHHHHHHHh
Confidence 224888899999999999988899999998877664
No 5
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.84 E-value=2.7e-20 Score=117.08 Aligned_cols=98 Identities=26% Similarity=0.212 Sum_probs=73.0
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeee--CCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKS--RAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM 78 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~--~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~ 78 (121)
|.+|||++++||++.+||.||++||||+.+..... ++.+.... .......+.++|.+...........+|..+++|+
T Consensus 29 w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~ 107 (130)
T cd03428 29 WDFPKGHVEPGEDDLEAALRETEEETGITAEQLFI-VLGFKETLNYQVRGKLKTVTYFLAELRPDVEVKLSEEHQDYRWL 107 (130)
T ss_pred CcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhh-hccceeEEEccccCcceEEEEEEEEeCCCCccccccceeeEEee
Confidence 89999999999999999999999999999877665 43332211 1122334567788776633222233678889999
Q ss_pred eHHHHHHhcCchhHHHHHHHH
Q 033333 79 SVAEARKVCQHWWMKEALDRL 99 (121)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~ 99 (121)
+++++.++...+.++.++.++
T Consensus 108 ~~~e~~~~~~~~~~~~~~~~~ 128 (130)
T cd03428 108 PYEEALKLLTYEDLKAVLDKA 128 (130)
T ss_pred cHHHHHHHcCchhHHHHHHHh
Confidence 999999999888888877765
No 6
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=6.3e-20 Score=115.86 Aligned_cols=101 Identities=21% Similarity=0.132 Sum_probs=72.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEe-eeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF-KSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~-~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~ 79 (121)
|.+|||++++|||+.+||.||++||||+++..... .+.+.+ ............+|.+.........+.+|..+++|++
T Consensus 29 w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~W~~ 107 (131)
T cd04695 29 WCHVAGGVEAGETAWQAALRELKEETGISLPELYN-ADYLEQFYEANDNRILMAPVFVGFVPPHQEVVLNHEHTEYRWCS 107 (131)
T ss_pred EECCcccccCCCCHHHHHHHHHHHHhCCCcccccc-ccceeeEeecCCceEEEEEEEEEEecCCCccccCchhcccEecC
Confidence 89999999999999999999999999999765432 222111 1111222344556766654433333446788899999
Q ss_pred HHHHHHhcCchhHHHHHHHHHHH
Q 033333 80 VAEARKVCQHWWMKEALDRLVMR 102 (121)
Q Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~ 102 (121)
++++.++...+..+.++..+.+.
T Consensus 108 ~~e~~~~~~~~~~~~~~~~~~~~ 130 (131)
T cd04695 108 FAEALELAPFPGQRALYDHVWRY 130 (131)
T ss_pred HHHHHHhcCChhHHHHHHHHHhh
Confidence 99999999999999888876654
No 7
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.83 E-value=2.1e-20 Score=117.04 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=66.1
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc-cCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~ 79 (121)
|.+|||++++||++++||+||++||||+.+..... ++.+.+.......+.+.++|.+.......... .+|..+++|++
T Consensus 30 w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~ 108 (125)
T cd04679 30 WGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRL-LCVVDHIIEEPPQHWVAPVYLAENFSGEPRLMEPDKLLELGWFA 108 (125)
T ss_pred EeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceE-EEEEeecccCCCCeEEEEEEEEeecCCccccCCCccccEEEEeC
Confidence 89999999999999999999999999999887776 77765544333345566778777654433222 35778899999
Q ss_pred HHHHHHhcC
Q 033333 80 VAEARKVCQ 88 (121)
Q Consensus 80 ~~~l~~~~~ 88 (121)
++++++.+.
T Consensus 109 ~~~l~~~l~ 117 (125)
T cd04679 109 LDALPQPLT 117 (125)
T ss_pred HHHCCchhH
Confidence 999977544
No 8
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.83 E-value=1.5e-19 Score=114.33 Aligned_cols=99 Identities=22% Similarity=0.365 Sum_probs=71.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccc-cccCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~ 79 (121)
|.+|||++++||++.+||.||++||||+.+..... ++.+.+.........+.++|.+........ ...++..++.|++
T Consensus 26 w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 104 (134)
T cd03675 26 FNQPAGHLEPGESLIEAAVRETLEETGWHVEPTAL-LGIYQWTAPDSDTTYLRFAFAAELLEHLPDQPLDSGIVRAHWLT 104 (134)
T ss_pred EECCCccCCCCCCHHHHHHHHHHHHHCcccccceE-EEEEEeecCCCCeeEEEEEEEEEECCCCCCCCCCCCceeeEEEe
Confidence 88999999999999999999999999999877666 776665444323334556677776654332 2335677899999
Q ss_pred HHHHHHhc---CchhHHHHHHHHH
Q 033333 80 VAEARKVC---QHWWMKEALDRLV 100 (121)
Q Consensus 80 ~~~l~~~~---~~~~~~~~~~~~~ 100 (121)
++++..+. ..+.+...+...+
T Consensus 105 ~~el~~~~~~~~~~~~~~~i~~~l 128 (134)
T cd03675 105 LEEILALAARLRSPLVLRCIEDYL 128 (134)
T ss_pred HHHHHhhhhhhcCchHHHHHHHHH
Confidence 99999885 3454445544433
No 9
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.83 E-value=3.5e-20 Score=117.58 Aligned_cols=98 Identities=20% Similarity=0.142 Sum_probs=74.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.+|||+++.||++.+||+||++||||+.+..... ++.+.+...........++|.+........ ..++..+++|+++
T Consensus 28 w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~e~~~~~W~~~ 105 (137)
T cd03427 28 WNGPGGKVEPGETPEECAIRELKEETGLTIDNLKL-VGIIKFPFPGEEERYGVFVFLATEFEGEPL-KESEEGILDWFDI 105 (137)
T ss_pred EeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceE-EEEEEEEcCCCCcEEEEEEEEECCcccccC-CCCccccceEEcH
Confidence 89999999999999999999999999999988777 787766544323445566777665443322 2345567899999
Q ss_pred HHHHHhcCchhHHHHHHHHH
Q 033333 81 AEARKVCQHWWMKEALDRLV 100 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~ 100 (121)
+++..+...+..+.+++.++
T Consensus 106 ~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 106 DDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred hhcccccCCCCcHHHHHHHh
Confidence 99988766677777776666
No 10
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.82 E-value=5.5e-20 Score=117.74 Aligned_cols=91 Identities=18% Similarity=0.110 Sum_probs=69.0
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc-ccccCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA-EWPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~~e~~~~~W~~ 79 (121)
|.||||++++||++++||+||++||||+++..... ++.+.+.... ......++|.+....... ....+|..+++|++
T Consensus 41 w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~w~~ 118 (142)
T cd04700 41 WHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKF-LGTYLGRFDD-GVLVLRHVWLAEPEGQTLAPKFTDEIAEASFFS 118 (142)
T ss_pred EECCceecCCCCCHHHHHHHHHHHhhCceeeccEE-EEEEEEEcCC-CcEEEEEEEEEEecCCccccCCCCCEEEEEEEC
Confidence 89999999999999999999999999999987776 7776543332 233445777777654321 12236778899999
Q ss_pred HHHHHHhcCchhHH
Q 033333 80 VAEARKVCQHWWMK 93 (121)
Q Consensus 80 ~~~l~~~~~~~~~~ 93 (121)
++++.+++..+.+.
T Consensus 119 ~~el~~~~~~g~i~ 132 (142)
T cd04700 119 REDVAQLYAQGQLR 132 (142)
T ss_pred HHHhhhcccccccc
Confidence 99999998776544
No 11
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.81 E-value=1.9e-19 Score=117.13 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=65.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeCC---C---CCeeEEEEEEeEecccccccccCCc
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRA---H---NTDYQGYMFPLLVQDQLAEWPEKNV 72 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~~---~---~~~~~~~~f~~~~~~~~~~~~~~e~ 72 (121)
|.||||+|++|||+++||+||++||||+.+.. ..+ ++.+.+.... . ..+++.++|.+............|.
T Consensus 45 W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~g~~~~~~~E~ 123 (159)
T PRK15434 45 WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQF-YGVWQHFYDDNFSGTDFTTHYVVLGFRLRVAEEDLLLPDEQH 123 (159)
T ss_pred EECCceecCCCCCHHHHHHHHHHHHHCCccccccceE-EEEEEeecccccCCCccceEEEEEEEEEEecCCcccCChHHe
Confidence 99999999999999999999999999998643 233 5554432221 1 2245667777776654433334578
Q ss_pred ceeEEEeHHHHHHhc-CchhHHHH
Q 033333 73 RSRKWMSVAEARKVC-QHWWMKEA 95 (121)
Q Consensus 73 ~~~~W~~~~~l~~~~-~~~~~~~~ 95 (121)
.+++|++++++..+. .++..+.+
T Consensus 124 ~~~~W~~~~el~~~~~~~~~~~~~ 147 (159)
T PRK15434 124 DDYRWLTPDALLASDNVHANSRAY 147 (159)
T ss_pred eEEEEEeHHHhhhccccCHHHHHH
Confidence 899999999998863 33433333
No 12
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.81 E-value=2.1e-19 Score=114.44 Aligned_cols=99 Identities=19% Similarity=0.194 Sum_probs=68.1
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeee------eEeeeCCC----CCeeEEEEEEeEeccccccc-cc
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE------WNFKSRAH----NTDYQGYMFPLLVQDQLAEW-PE 69 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~------~~~~~~~~----~~~~~~~~f~~~~~~~~~~~-~~ 69 (121)
|.+|||++++||++++||.||++||||+.+..... .+. +....... ...++.++|.+......... ..
T Consensus 28 w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 106 (138)
T cd03674 28 WLQPGGHIDPDESLLEAALRELREETGIELLGLRP-LSVLVDLDVHPIDGHPKRGVPGHLHLDLRFLAVAPADDVAPPKS 106 (138)
T ss_pred EECCceecCCCCCHHHHHHHHHHHHHCCCccccee-ccccccceeEeecCCCCCCCCCcEEEEEEEEEEccCccccCCCC
Confidence 89999999999999999999999999998654433 221 11111111 12234456777655433222 44
Q ss_pred CCcceeEEEeHHHHHHhcCchhHHHHHHHHH
Q 033333 70 KNVRSRKWMSVAEARKVCQHWWMKEALDRLV 100 (121)
Q Consensus 70 ~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~ 100 (121)
+|..+++|++++++..+...+..+.++..++
T Consensus 107 ~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 107 DESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred CcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 6778899999999987766677777777654
No 13
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=1.2e-19 Score=112.59 Aligned_cols=86 Identities=22% Similarity=0.272 Sum_probs=65.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceee-eecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI-VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~-~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~ 79 (121)
|.+|||++++|||+++||+||++||||+.+. .... ++.+.+... ......++|.+...........+|..+++|++
T Consensus 25 w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~ 101 (120)
T cd04680 25 WYLPGGGLERGETFAEAARRELLEELGIRLAVVAEL-LGVYYHSAS--GSWDHVIVFRARADTQPVIRPSHEISEARFFP 101 (120)
T ss_pred EeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccce-EEEEecCCC--CCceEEEEEEecccCCCccCCcccEEEEEEEC
Confidence 8999999999999999999999999999998 7666 777654432 22345577777765543333446778899999
Q ss_pred HHHHHHhcCc
Q 033333 80 VAEARKVCQH 89 (121)
Q Consensus 80 ~~~l~~~~~~ 89 (121)
++++++++..
T Consensus 102 ~~~l~~~~~~ 111 (120)
T cd04680 102 PDALPEPTTP 111 (120)
T ss_pred HHHCcccCCh
Confidence 9999886553
No 14
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.81 E-value=1.8e-19 Score=113.37 Aligned_cols=95 Identities=20% Similarity=0.111 Sum_probs=68.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE----eeeCCCCCeeEEEEEEeEecccccccccCCcceeE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN----FKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRK 76 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~ 76 (121)
|.+|||++++||++.+||+||++||||+.+..... ++.+. +.....+.....++|++...........+|..+++
T Consensus 30 w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~E~~~~~ 108 (129)
T cd04664 30 WQSVTGGIEDGESPAEAARREVAEETGLDPERLTL-LDRGASIAFVEFTDNGRVWTEHPFAFHLPSDAVVTLDWEHDAFE 108 (129)
T ss_pred ccccCcccCCCCCHHHHHHHHHHHHHCCChhheEE-EeecccccccccCCCceEEEEeEEEEEcCCCCcccCCccccccE
Confidence 89999999999999999999999999999755444 44332 11111113345677888766543223345777899
Q ss_pred EEeHHHHHHhcCchhHHHHH
Q 033333 77 WMSVAEARKVCQHWWMKEAL 96 (121)
Q Consensus 77 W~~~~~l~~~~~~~~~~~~~ 96 (121)
|++++++.++...+.++.++
T Consensus 109 W~~~~e~~~~~~~~~~~~~~ 128 (129)
T cd04664 109 WVPPEEAAALLLWESNRRAW 128 (129)
T ss_pred ecCHHHHHHHHcChhhhhhh
Confidence 99999999998877666554
No 15
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.81 E-value=2.7e-19 Score=111.19 Aligned_cols=89 Identities=22% Similarity=0.254 Sum_probs=66.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC----CCeeEEEEEEeEecccccccccCCcceeE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH----NTDYQGYMFPLLVQDQLAEWPEKNVRSRK 76 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~----~~~~~~~~f~~~~~~~~~~~~~~e~~~~~ 76 (121)
|.||||++++||++++||.||++||||+++..... ++.+.+..... ......++|.+....... .+.+|..+++
T Consensus 27 w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~E~~~~~ 104 (122)
T cd04673 27 WSFPGGKVELGETLEQAALRELLEETGLEAEVGRL-LTVVDVIERDAAGRVEFHYVLIDFLCRYLGGEP-VAGDDALDAR 104 (122)
T ss_pred EECCCcccCCCCCHHHHHHHHHHHhhCcEeeecee-EEEEEEeeccCCCccceEEEEEEEEEEeCCCcc-cCCcccceeE
Confidence 89999999999999999999999999999887776 77765544321 123344556666544332 3446778899
Q ss_pred EEeHHHHHHhcCchh
Q 033333 77 WMSVAEARKVCQHWW 91 (121)
Q Consensus 77 W~~~~~l~~~~~~~~ 91 (121)
|++++++.++...+.
T Consensus 105 w~~~~el~~~~~~~~ 119 (122)
T cd04673 105 WVPLDELAALSLTES 119 (122)
T ss_pred EECHHHHhhCcCCcc
Confidence 999999998765553
No 16
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.80 E-value=5.1e-19 Score=113.53 Aligned_cols=85 Identities=19% Similarity=0.257 Sum_probs=62.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeee--cceeeeeEeeeCC------CCCeeEEEEEEeEecccccccccCCc
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVE--CELLGEWNFKSRA------HNTDYQGYMFPLLVQDQLAEWPEKNV 72 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~--~~~l~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~~~~~e~ 72 (121)
|.||||+++.|||+++||+||++||||+.+... .+ ++.+.+.... ...+++..+|.+.........+.++.
T Consensus 40 w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 118 (144)
T cd03430 40 WFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAEL-LGVFEHFYDDNFFGDDFSTHYVVLGYVLKLSSNELLLPDEQH 118 (144)
T ss_pred EECCCceecCCCCHHHHHHHHHHHHHCCCcccccceE-EEEEEEEeccccccCCCccEEEEEEEEEEEcCCcccCCchhc
Confidence 899999999999999999999999999998766 55 6665432221 12244556676665544333344678
Q ss_pred ceeEEEeHHHHHHh
Q 033333 73 RSRKWMSVAEARKV 86 (121)
Q Consensus 73 ~~~~W~~~~~l~~~ 86 (121)
.+++|+++++++++
T Consensus 119 ~~~~W~~~~el~~~ 132 (144)
T cd03430 119 SEYQWLTSDELLAD 132 (144)
T ss_pred cEeEEecHHHHhcC
Confidence 89999999999875
No 17
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=2.3e-19 Score=112.84 Aligned_cols=97 Identities=22% Similarity=0.190 Sum_probs=66.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC--CCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA--HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM 78 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~ 78 (121)
|.+|||++++||++.+||.||++||||+++..... ++.+...... .......++|.+...........++..+++|+
T Consensus 29 w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W~ 107 (130)
T cd04681 29 LDLPGGFVDPGESAEEALIREIREETGLKVTELSY-LFSLPNTYPYGGMEYDTLDLFFVCQVDDKPIVKAPDDVAELKWV 107 (130)
T ss_pred EeCCceeecCCCCHHHHHHHHHHHHhCCcccceeE-EEeecceeeeCCceeEEEEEEEEEEeCCCCCcCChHHhheeEEe
Confidence 89999999999999999999999999999876665 6654322221 11223345666766544332333677889999
Q ss_pred eHHHHH-HhcCchhHHHHHHH
Q 033333 79 SVAEAR-KVCQHWWMKEALDR 98 (121)
Q Consensus 79 ~~~~l~-~~~~~~~~~~~~~~ 98 (121)
+++++. ..+..+..+.+++.
T Consensus 108 ~~~el~~~~~~~~~~~~~~~~ 128 (130)
T cd04681 108 VPQDIELENFAFPSIRQAVER 128 (130)
T ss_pred cHHHCCcccCCcHHHHHHHHh
Confidence 999985 33455555555543
No 18
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=3.7e-19 Score=111.48 Aligned_cols=89 Identities=21% Similarity=0.193 Sum_probs=67.0
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC--CCeeEEEEEEeEeccccccc-------ccCC
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH--NTDYQGYMFPLLVQDQLAEW-------PEKN 71 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~-------~~~e 71 (121)
|.+|||++++||++.+||.||++||||+.+..... ++.+.+..... ..+...++|.+......... ..++
T Consensus 25 w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~e 103 (126)
T cd04688 25 YRPPGGGIEFGESSEEALIREFKEELGLKIEITRL-LGVVENIFTYNGKPGHEIEFYYLVTLLDESLYQQDIEILEEEGE 103 (126)
T ss_pred EECCCccccCCCCHHHHHHHHHHHHhCCceeccee-eEEEEEeeccCCcccEEEEEEEEEEeCCCcccccccceeccCCC
Confidence 89999999999999999999999999999888777 77755332222 23455678888876654322 2356
Q ss_pred cceeEEEeHHHHHHhcCch
Q 033333 72 VRSRKWMSVAEARKVCQHW 90 (121)
Q Consensus 72 ~~~~~W~~~~~l~~~~~~~ 90 (121)
..+++|++++++..+...|
T Consensus 104 ~~~~~W~~~~~l~~~~~~p 122 (126)
T cd04688 104 KIVFRWIPIDELKEIKLYP 122 (126)
T ss_pred EEEEEEeeHHHcccCccCC
Confidence 7789999999998764444
No 19
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.80 E-value=8.1e-19 Score=109.84 Aligned_cols=93 Identities=18% Similarity=0.114 Sum_probs=65.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC--C-CCeeEEEEEEeEecccccccccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA--H-NTDYQGYMFPLLVQDQLAEWPEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~--~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W 77 (121)
|.+|||++++|||+++||+||++||||+.+..... ++...+.... . ..+++.+.|.+..... .....++..+++|
T Consensus 28 w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~W 105 (125)
T cd04696 28 WGVPGGKVEWGETLEEALKREFREETGLKLRDIKF-AMVQEAIFSEEFHKPAHFVLFDFFARTDGT-EVTPNEEIVEWEW 105 (125)
T ss_pred EeCCceeccCCCCHHHHHHHHHHHHhCCcccccce-EEEEEEeccCCCCCccEEEEEEEEEEecCC-cccCCcccceeEE
Confidence 89999999999999999999999999999876665 5543332211 1 1233445566665432 2234467788999
Q ss_pred EeHHHHHHhcCchhHHHH
Q 033333 78 MSVAEARKVCQHWWMKEA 95 (121)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~ 95 (121)
++++++.++-..+..+++
T Consensus 106 ~~~~el~~~~~~~~~~~~ 123 (125)
T cd04696 106 VTPEEALDYPLNSFTRLL 123 (125)
T ss_pred ECHHHHhcCCCCHHHHHH
Confidence 999999988666655443
No 20
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.80 E-value=3.1e-19 Score=111.95 Aligned_cols=104 Identities=47% Similarity=0.829 Sum_probs=85.7
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCC--cceeEEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKN--VRSRKWM 78 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e--~~~~~W~ 78 (121)
|.+|+|++|++|+..+||.||+.||+|+.........+...+.+..+......+.|.+.+.......|..+ ..+.+|+
T Consensus 38 wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~ 117 (145)
T KOG2839|consen 38 WIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTKPKGVMYVLAVTEELEDWPESEHEFREREWL 117 (145)
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhcccccceeehhhhhhhcccChhhhcccceeEEe
Confidence 89999999999999999999999999999988885255555665555555667788887777666666644 8889999
Q ss_pred eHHHHHHhcCchhHHHHHHHHHHHhc
Q 033333 79 SVAEARKVCQHWWMKEALDRLVMRLT 104 (121)
Q Consensus 79 ~~~~l~~~~~~~~~~~~~~~~~~~~~ 104 (121)
.++|+.....+..+..++..+.+.+.
T Consensus 118 ~ledA~~~~~~~~m~~al~e~~~~l~ 143 (145)
T KOG2839|consen 118 KLEDAIELCQHKWMKAALEEFLQFLC 143 (145)
T ss_pred eHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 99999999889999999888887654
No 21
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.80 E-value=3.2e-19 Score=114.55 Aligned_cols=86 Identities=22% Similarity=0.232 Sum_probs=65.7
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~~ 79 (121)
|+||||+|+.|||+++||+||++||||+++....+ ++++....+....++..++|++........... ++...+.|++
T Consensus 37 WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~-~~v~~~~~rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~ 115 (145)
T COG1051 37 WALPGGFVEIGETLEEAARRELKEETGLRVRVLEL-LAVFDDPGRDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFP 115 (145)
T ss_pred EeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeE-EEEecCCCCCCceeEEEEEEEEEecCCCcccCChhhHhhcceec
Confidence 99999999999999999999999999999988888 888876655433445555555554433222222 4677799999
Q ss_pred HHHHHHhc
Q 033333 80 VAEARKVC 87 (121)
Q Consensus 80 ~~~l~~~~ 87 (121)
+++++.+.
T Consensus 116 ~~~l~~~~ 123 (145)
T COG1051 116 LDELPELP 123 (145)
T ss_pred HhHccccc
Confidence 99998753
No 22
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.79 E-value=7.8e-19 Score=110.29 Aligned_cols=99 Identities=23% Similarity=0.267 Sum_probs=74.7
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCC-eeEEEEEEeEecccc-ccccc-CCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNT-DYQGYMFPLLVQDQL-AEWPE-KNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~-~~~~~~f~~~~~~~~-~~~~~-~e~~~~~W 77 (121)
|.+|||++++||++.+||+||++||||+.+..... ++.+.+....... ....++|.+...... ...+. .+..+++|
T Consensus 32 ~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W 110 (134)
T PF00293_consen 32 WELPGGGIEPGESPEEAARRELKEETGLDVSPLEL-LGLFSYPSPSGDPEGEIVIFFIAELPSEQSEIQPQDEEISEVKW 110 (134)
T ss_dssp EESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEE-EEEEEEEETTTESSEEEEEEEEEEEEEEESECHTTTTTEEEEEE
T ss_pred EecceeeEEcCCchhhhHHhhhhhcccceeccccc-ceeeeecccCCCcccEEEEEEEEEEeCCccccCCCCccEEEEEE
Confidence 88999999999999999999999999999866665 6665555554332 345566666655544 22222 48888999
Q ss_pred EeHHHHHHhcCchhHHHHHHHHH
Q 033333 78 MSVAEARKVCQHWWMKEALDRLV 100 (121)
Q Consensus 78 ~~~~~l~~~~~~~~~~~~~~~~~ 100 (121)
++++++.++..++....+++.+.
T Consensus 111 ~~~~el~~~~~~~~~~~~i~~~~ 133 (134)
T PF00293_consen 111 VPPDELLELLLNGRIRKIIPWLY 133 (134)
T ss_dssp EEHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEHHHhhhchhCcchhhhhcccc
Confidence 99999999988887777766653
No 23
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.79 E-value=1.2e-18 Score=110.35 Aligned_cols=87 Identities=18% Similarity=0.218 Sum_probs=62.2
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeec---ceeeeeEeeeCCCC-----CeeEEEEEEeEecccccccccCCc
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC---ELLGEWNFKSRAHN-----TDYQGYMFPLLVQDQLAEWPEKNV 72 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~---~~l~~~~~~~~~~~-----~~~~~~~f~~~~~~~~~~~~~~e~ 72 (121)
|.||||++++|||+.+||.||++||||+.+.... ..++.+.+.++... .....++|.+...+... .+.++.
T Consensus 28 W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~-~~~~e~ 106 (132)
T cd04661 28 WILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFKARYMSGQF-ELSQNQ 106 (132)
T ss_pred eECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEEEEEecCcc-ccCCCc
Confidence 9999999999999999999999999999866421 11333434332211 12356778887665433 234678
Q ss_pred ceeEEEeHHHHHHhcC
Q 033333 73 RSRKWMSVAEARKVCQ 88 (121)
Q Consensus 73 ~~~~W~~~~~l~~~~~ 88 (121)
.+++|++++++..++.
T Consensus 107 ~~~~W~~~~el~~~l~ 122 (132)
T cd04661 107 VDFKWLAKEELQKYLN 122 (132)
T ss_pred ceeEecCHHHHHhhcC
Confidence 8999999999998765
No 24
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.79 E-value=8.4e-19 Score=110.84 Aligned_cols=81 Identities=21% Similarity=0.169 Sum_probs=60.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.+|||+++.||++++||+||++||||+.+..... ++.+.+... ..+.++|.+...........+|..+++|+++
T Consensus 27 w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~-l~~~~~~~~----~~~~~~f~~~~~~~~~~~~~~E~~~~~w~~~ 101 (131)
T cd03429 27 YSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRY-VGSQPWPFP----SSLMLGFTAEADSGEIVVDDDELEDARWFSR 101 (131)
T ss_pred CcCCcccccCCCCHHHHHhhhhhhccCceeeeeEE-EeecCCCCC----ceEEEEEEEEEcCCcccCCchhhhccEeecH
Confidence 89999999999999999999999999999877766 665433221 2345667776654332223367778999999
Q ss_pred HHHHHh
Q 033333 81 AEARKV 86 (121)
Q Consensus 81 ~~l~~~ 86 (121)
+++.++
T Consensus 102 ~el~~~ 107 (131)
T cd03429 102 DEVRAA 107 (131)
T ss_pred HHHhhc
Confidence 999884
No 25
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.2e-18 Score=109.46 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=64.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC------CCCeeEEEEEEeEecccccc----cccC
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA------HNTDYQGYMFPLLVQDQLAE----WPEK 70 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~------~~~~~~~~~f~~~~~~~~~~----~~~~ 70 (121)
|.+|||++++||++++||.||++||||+.+..... ++.+.+.... ...+.+.++|.+........ .++.
T Consensus 27 ~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~ 105 (128)
T cd04687 27 YILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPL-LFVREYIGHNPTSELPGHFHQVELMFECKIKSGTPAKTPSKPDP 105 (128)
T ss_pred EECCCcccCCCCCHHHHHHHHHHHHHCCccccCcE-EEEEEEeccCccccCCCceeEEEEEEEEEECCCCcccccCCCCC
Confidence 88999999999999999999999999999887665 5555543221 12344567777776554321 1233
Q ss_pred CcceeEEEeHHHHHHhcCch
Q 033333 71 NVRSRKWMSVAEARKVCQHW 90 (121)
Q Consensus 71 e~~~~~W~~~~~l~~~~~~~ 90 (121)
+..+++|++++++.++...|
T Consensus 106 ~~~~~~W~~~~~l~~~~~~p 125 (128)
T cd04687 106 NQIGVEWLKLKELGDIPLYP 125 (128)
T ss_pred CEEeeEEEcHHHhCcccccC
Confidence 45679999999998875554
No 26
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.1e-18 Score=107.37 Aligned_cols=87 Identities=21% Similarity=0.216 Sum_probs=64.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.+|||++++||++.+||.||++||||+.+..... ++.+. .. ....++|.+.........+.++..+++|+++
T Consensus 23 w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-~~~~~----~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 95 (112)
T cd04667 23 WALPGGKIEPGETPLQAARRELQEETGLQGLDLLY-LFHVD----GG--STRHHVFVASVPPSAQPKPSNEIADCRWLSL 95 (112)
T ss_pred EeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEE-EEEEe----CC--CEEEEEEEEEcCCcCCCCCchheeEEEEecH
Confidence 89999999999999999999999999999766555 55432 11 2234667776554433334567788999999
Q ss_pred HHHHHhcCchhHHH
Q 033333 81 AEARKVCQHWWMKE 94 (121)
Q Consensus 81 ~~l~~~~~~~~~~~ 94 (121)
+++.++..++..+.
T Consensus 96 ~el~~~~~~~~~~~ 109 (112)
T cd04667 96 DALGDLNASAATRL 109 (112)
T ss_pred HHhhhcccchhhhh
Confidence 99999877664443
No 27
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.78 E-value=1.4e-18 Score=108.53 Aligned_cols=96 Identities=21% Similarity=0.207 Sum_probs=66.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEe-----eeCCCC-CeeEEEEEEeEecccccccccCCcce
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNF-----KSRAHN-TDYQGYMFPLLVQDQLAEWPEKNVRS 74 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~-----~~~~~~-~~~~~~~f~~~~~~~~~~~~~~e~~~ 74 (121)
|.||||++++||++++||.||++||||+.+..... ++.+.. ....+. .....++|.+...........++..+
T Consensus 27 w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 105 (129)
T cd04676 27 WALPGGAVEPGESPADTAVREVREETGLDVEVTGL-VGIYTGPVHVVTYPNGDVRQYLDITFRCRVVGGELRVGDDESLD 105 (129)
T ss_pred EECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEE-EEEeecccceeecCCCCcEEEEEEEEEEEeeCCeecCCCCceeE
Confidence 89999999999999999999999999999876554 444321 111111 13344556655544332234467778
Q ss_pred eEEEeHHHHHHhcCchhHHHHHH
Q 033333 75 RKWMSVAEARKVCQHWWMKEALD 97 (121)
Q Consensus 75 ~~W~~~~~l~~~~~~~~~~~~~~ 97 (121)
++|++++++..+..++.++.+++
T Consensus 106 ~~w~~~~el~~~~~~~~~~~~~~ 128 (129)
T cd04676 106 VAWFDPDGLPPLLMHPSMRLRID 128 (129)
T ss_pred EEEEChhhCccccCCHhHHHHhc
Confidence 99999999999877776666553
No 28
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.77 E-value=2.7e-18 Score=107.45 Aligned_cols=83 Identities=22% Similarity=0.203 Sum_probs=60.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCC--CeeEEEEEEeEecccc---cccccCCccee
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN--TDYQGYMFPLLVQDQL---AEWPEKNVRSR 75 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~--~~~~~~~f~~~~~~~~---~~~~~~e~~~~ 75 (121)
|.+|||++++||++.+||.||++||||+++..... ++.+.+.....+ .+.+.++|.+...... .....++..++
T Consensus 25 ~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~e~~~~ 103 (125)
T cd04689 25 YFLPGGHVEPGETAENALRRELQEELGVAVSDGRF-LGAIENQWHEKGVRTHEINHIFAVESSWLASDGPPQADEDHLSF 103 (125)
T ss_pred EECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEE-EEEEeeeeccCCceEEEEEEEEEEEcccccccCCccCccceEEE
Confidence 88999999999999999999999999999887776 777654333222 2334566776654322 11223457789
Q ss_pred EEEeHHHHH
Q 033333 76 KWMSVAEAR 84 (121)
Q Consensus 76 ~W~~~~~l~ 84 (121)
+|++++++.
T Consensus 104 ~W~~~~el~ 112 (125)
T cd04689 104 SWVPVSDLS 112 (125)
T ss_pred EEccHHHcc
Confidence 999999964
No 29
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=3e-18 Score=107.67 Aligned_cols=85 Identities=26% Similarity=0.238 Sum_probs=64.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc---cCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP---EKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~---~~e~~~~~W 77 (121)
|.+|||++++||++.+||.||++||||+.+..... ++.+.......+.++..++|.+.......... .++..+++|
T Consensus 30 w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~W 108 (129)
T cd04678 30 WALPGGHLEFGESFEECAAREVLEETGLHIENVQF-LTVTNDVFEEEGKHYVTIFVKAEVDDGEAEPNKMEPEKCEGWEW 108 (129)
T ss_pred EECCcccccCCCCHHHHHHHHHHHHhCCcccceEE-EEEEeEEeCCCCcEEEEEEEEEEeCCCCcccCCCCCceeCceEE
Confidence 89999999999999999999999999999877666 77655433333445566777777665433222 245667899
Q ss_pred EeHHHHHHh
Q 033333 78 MSVAEARKV 86 (121)
Q Consensus 78 ~~~~~l~~~ 86 (121)
++++++.++
T Consensus 109 ~~~~~l~~~ 117 (129)
T cd04678 109 FDWEELPSV 117 (129)
T ss_pred eCHHHCCCc
Confidence 999999875
No 30
>PLN02325 nudix hydrolase
Probab=99.77 E-value=1.4e-18 Score=111.57 Aligned_cols=87 Identities=21% Similarity=0.155 Sum_probs=62.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC--CCCeeEEEEEEeEeccccccc--cc-CCccee
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA--HNTDYQGYMFPLLVQDQLAEW--PE-KNVRSR 75 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~--~~-~e~~~~ 75 (121)
|.+|||+++.||++.+||+||++||||+.+....+ ++.+.+.... ...+++.++|.+......... .+ ++..++
T Consensus 36 W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~-l~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~ 114 (144)
T PLN02325 36 FALPGGHLEFGESFEECAAREVKEETGLEIEKIEL-LTVTNNVFLEEPKPSHYVTVFMRAVLADPSQVPQNLEPEKCYGW 114 (144)
T ss_pred EECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEecceeecCCCCcEEEEEEEEEEECCCCCCCCcCCchhcCce
Confidence 89999999999999999999999999999988877 7775432221 223445566666654332111 12 345778
Q ss_pred EEEeHHHHHHhcC
Q 033333 76 KWMSVAEARKVCQ 88 (121)
Q Consensus 76 ~W~~~~~l~~~~~ 88 (121)
+|+++++++....
T Consensus 115 ~W~~~d~Lp~~~~ 127 (144)
T PLN02325 115 DWYEWDNLPEPLF 127 (144)
T ss_pred EEEChHHCChhhh
Confidence 9999999987544
No 31
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=1.8e-18 Score=107.38 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=59.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceee--eecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc-ccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI--VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW-PEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~--~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~-~~~e~~~~~W 77 (121)
|.+|||++++||++.+||.||++||||+.+. .... ++.+.+.... ....+.++|.+......... ..++..+++|
T Consensus 28 w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~-~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~W 105 (120)
T cd04683 28 WALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRL-AHTMHRRTED-IESRIGLFFTVRRWSGEPRNCEPDKCAELRW 105 (120)
T ss_pred EeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEEecCCC-CceEEEEEEEEEeecCccccCCCCcEeeEEE
Confidence 8999999999999999999999999999976 3333 5555433222 23344556666544333222 2356778999
Q ss_pred EeHHHHHHhc
Q 033333 78 MSVAEARKVC 87 (121)
Q Consensus 78 ~~~~~l~~~~ 87 (121)
++++++...+
T Consensus 106 ~~~~~l~~~~ 115 (120)
T cd04683 106 FPLDALPDDT 115 (120)
T ss_pred EchHHCcchh
Confidence 9999997654
No 32
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.77 E-value=3.8e-18 Score=108.90 Aligned_cols=96 Identities=16% Similarity=0.126 Sum_probs=61.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceee-eeE-----eeeCCCCCeeEEE---EEEeEecccccccccCC
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLG-EWN-----FKSRAHNTDYQGY---MFPLLVQDQLAEWPEKN 71 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~-~~~-----~~~~~~~~~~~~~---~f~~~~~~~~~~~~~~e 71 (121)
|.+|||++++||++++||+||++||||+.+..... .. .+. ..+..+......+ +|.+..... ...+.+|
T Consensus 33 W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E 110 (141)
T PRK15472 33 WALSGGGVEPGERIEEALRREIREELGEQLLLTEI-TPWTFRDDIRTKTYADGRKEEIYMIYLIFDCVSANR-DVKINEE 110 (141)
T ss_pred eeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeee-ccccccccceeEEecCCCceeEEEEEEEEEeecCCC-cccCChh
Confidence 89999999999999999999999999998754331 11 110 1111111111112 233332222 2233467
Q ss_pred cceeEEEeHHHHHHhcCchhHHHHHHH
Q 033333 72 VRSRKWMSVAEARKVCQHWWMKEALDR 98 (121)
Q Consensus 72 ~~~~~W~~~~~l~~~~~~~~~~~~~~~ 98 (121)
..+++|++++++.++...+..+.+++.
T Consensus 111 ~~~~~w~~~~el~~l~~~~~~~~~~~~ 137 (141)
T PRK15472 111 FQDYAWVKPEDLVHYDLNVATRKTLRL 137 (141)
T ss_pred hheEEEccHHHhccccccHHHHHHHHH
Confidence 788999999999998777766666553
No 33
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=2e-18 Score=107.82 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=63.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC---CCCeeEEEEEEeEecccccccccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA---HNTDYQGYMFPLLVQDQLAEWPEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W 77 (121)
|.+|||++++||++.+||.||++||||+.+..... ++.+...... ...+.+..+|.+....... .+.+|..+++|
T Consensus 26 w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~~E~~~~~W 103 (123)
T cd04672 26 WSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKL-AAVDDRNKHHPPPQPYQVYKLFFLCEILGGEF-KPNIETSEVGF 103 (123)
T ss_pred EeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEE-EEEeccccccCCCCceEEEEEEEEEEecCCcc-cCCCceeeeEE
Confidence 89999999999999999999999999999866555 6654322111 1123344566666654332 23367788999
Q ss_pred EeHHHHHHhcCchhH
Q 033333 78 MSVAEARKVCQHWWM 92 (121)
Q Consensus 78 ~~~~~l~~~~~~~~~ 92 (121)
++++++.++......
T Consensus 104 ~~~~el~~l~~~~~~ 118 (123)
T cd04672 104 FALDDLPPLSEKRNT 118 (123)
T ss_pred ECHHHCcccccCCcc
Confidence 999999887654433
No 34
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.2e-18 Score=107.80 Aligned_cols=85 Identities=18% Similarity=0.251 Sum_probs=63.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeCCC-CCeeEEEEEEeEecccccccccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSRAH-NTDYQGYMFPLLVQDQLAEWPEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W 77 (121)
|.||||++++||++++||.||++||||+.+.. ... ++.+.+..... +.....++|.+.... ...+.++..+++|
T Consensus 25 w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~e~~~~~W 101 (118)
T cd04690 25 FYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEY-LGTFRAPAANEPGVDVRATVYVAELTG--EPVPAAEIEEIRW 101 (118)
T ss_pred EECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEE-EEEEecccccCCCcEEEEEEEEEcccC--CcCCCchhhccEE
Confidence 89999999999999999999999999999876 666 77665432222 234456777777654 2234467788999
Q ss_pred EeHHHHHHhcC
Q 033333 78 MSVAEARKVCQ 88 (121)
Q Consensus 78 ~~~~~l~~~~~ 88 (121)
++++++.....
T Consensus 102 ~~~~e~~~~~~ 112 (118)
T cd04690 102 VDYDDPADDRL 112 (118)
T ss_pred ecHHHcccccc
Confidence 99999865433
No 35
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.76 E-value=6.1e-18 Score=108.68 Aligned_cols=84 Identities=17% Similarity=0.231 Sum_probs=55.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEe-cccccc--cccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLV-QDQLAE--WPEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~--~~~~e~~~~~W 77 (121)
|.||||++++||++.+||+||++||||+.+..... ... +........ ..++|.+.. ...... .+.+|..+++|
T Consensus 27 W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~-~~~--~~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~E~~~~~W 102 (145)
T cd03672 27 WSFPKGKINKDEDDHDCAIREVYEETGFDISKYID-KDD--YIELIIRGQ-NVKLYIVPGVPEDTPFEPKTRKEISKIEW 102 (145)
T ss_pred EECCCccCCCCcCHHHHHHHHHHHhhCccceeccc-cce--eeecccCCc-EEEEEEEecCCCCcccCcCChhhhheEEE
Confidence 89999999999999999999999999999765321 122 222211121 234444432 222211 22357888999
Q ss_pred EeHHHHHHhcC
Q 033333 78 MSVAEARKVCQ 88 (121)
Q Consensus 78 ~~~~~l~~~~~ 88 (121)
++++++..+..
T Consensus 103 v~~~el~~~~~ 113 (145)
T cd03672 103 FDIKDLPTKKN 113 (145)
T ss_pred eeHHHhhhhhh
Confidence 99999998754
No 36
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=3.8e-18 Score=106.41 Aligned_cols=83 Identities=25% Similarity=0.251 Sum_probs=59.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc---------ccCC
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW---------PEKN 71 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---------~~~e 71 (121)
|.||||+++.||++.+||+||++||||+.+....+ ++.+.+ . +. ..++|.+......... ...+
T Consensus 27 w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~-~~~~~~--~--~~--~~~~f~~~~~~g~~~~~~~~e~~~~~~~~ 99 (121)
T cd04669 27 YVFPGGGIEEGETPEEAAKREALEELGLDVRVEEI-FLIVNQ--N--GR--TEHYFLARVISGKLGLGVGEEFERQSDDN 99 (121)
T ss_pred EECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeE-EEEEee--C--Cc--EEEEEEEEEECCeecCCCchhhcccCCCC
Confidence 89999999999999999999999999999977666 666554 1 11 2356666544322111 1223
Q ss_pred cceeEEEeHHHHHHhcCch
Q 033333 72 VRSRKWMSVAEARKVCQHW 90 (121)
Q Consensus 72 ~~~~~W~~~~~l~~~~~~~ 90 (121)
..+++|++++++..+...|
T Consensus 100 ~~~~~Wv~~~el~~l~~~p 118 (121)
T cd04669 100 QYHPVWVDLDQLETIPLRP 118 (121)
T ss_pred ceEEEEEEHHHcccCCCCC
Confidence 4568999999999875544
No 37
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=4.1e-18 Score=107.29 Aligned_cols=88 Identities=22% Similarity=0.216 Sum_probs=60.0
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeE----eeeCCCC-CeeEEEE-EEeEecccccccccCCcce
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWN----FKSRAHN-TDYQGYM-FPLLVQDQLAEWPEKNVRS 74 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~----~~~~~~~-~~~~~~~-f~~~~~~~~~~~~~~e~~~ 74 (121)
|.||||++++||++.+||.||++||||+.+..... ++.+. +.....+ ......+ |+..........+.++..+
T Consensus 32 w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 110 (132)
T cd04677 32 WGLPGGAMELGESLEETARRELKEETGLEVEELEL-LGVYSGKEFYVKPNGDDEQYIVTLYYVTKVFGGKLVPDGDETLE 110 (132)
T ss_pred EECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEE-EEEecCCceeecCCCCcEEEEEEEEEEEeccCCcccCCCCceee
Confidence 89999999999999999999999999999887766 65542 2111111 1223333 3333322222334467788
Q ss_pred eEEEeHHHHHHhcCc
Q 033333 75 RKWMSVAEARKVCQH 89 (121)
Q Consensus 75 ~~W~~~~~l~~~~~~ 89 (121)
++|++++++..+...
T Consensus 111 ~~W~~~~e~~~~~~~ 125 (132)
T cd04677 111 LKFFSLDELPELINP 125 (132)
T ss_pred EEEEChhHCccchhH
Confidence 999999999876553
No 38
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.76 E-value=1.2e-17 Score=107.43 Aligned_cols=98 Identities=17% Similarity=0.241 Sum_probs=65.1
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeee----EeeeCCC---------CCeeEEEEEEeEecc--cc-
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW----NFKSRAH---------NTDYQGYMFPLLVQD--QL- 64 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~----~~~~~~~---------~~~~~~~~f~~~~~~--~~- 64 (121)
|.+|||++++||++.+||+||++||||+.+....+ ++.. .|..... ......++|++.... ..
T Consensus 29 W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~-l~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 107 (147)
T cd03671 29 WQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEI-IAEIPDWLRYDLPPELKLKIWGGRYRGQEQKWFLFRFTGDDSEI 107 (147)
T ss_pred EECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEE-EEEcCCeeEeeChhhhhccccCCcCCCEEEEEEEEEecCCCccc
Confidence 89999999999999999999999999999766554 5542 2222110 011234566655543 11
Q ss_pred cccc--cCCcceeEEEeHHHHHHhcCchhHHHHHHHHH
Q 033333 65 AEWP--EKNVRSRKWMSVAEARKVCQHWWMKEALDRLV 100 (121)
Q Consensus 65 ~~~~--~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~ 100 (121)
...+ .+|..+++|++++++.++.. +....++.++.
T Consensus 108 ~l~~~~~~E~~~~~W~~~~el~~~~~-~~~~~~~~~~~ 144 (147)
T cd03671 108 DLNAPEHPEFDEWRWVPLEELPDLIV-PFKRPVYEAVL 144 (147)
T ss_pred cCCCCCCCCEeeEEeCCHHHHHHhch-hhhHHHHHHHH
Confidence 1122 35788899999999999865 33444555443
No 39
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.76 E-value=3.3e-18 Score=108.55 Aligned_cols=88 Identities=20% Similarity=0.055 Sum_probs=64.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc--ccccCCcceeEEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA--EWPEKNVRSRKWM 78 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~e~~~~~W~ 78 (121)
|.+|||+++.||++.+||+||++||||+.+..... ++.+.+. ........++|.+....... ....+|..+++|+
T Consensus 31 w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~ 107 (137)
T cd03424 31 LELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK-LGSFYPS--PGFSDERIHLFLAEDLSPGEEGLLDEGEDIEVVLV 107 (137)
T ss_pred EEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEE-EeeEecC--CcccCccEEEEEEEcccccccCCCCCCCeeEEEEe
Confidence 88999999999999999999999999999865554 6655332 12222345667766655432 2234678889999
Q ss_pred eHHHHHHhcCchh
Q 033333 79 SVAEARKVCQHWW 91 (121)
Q Consensus 79 ~~~~l~~~~~~~~ 91 (121)
+++++.+++....
T Consensus 108 ~~~el~~~~~~~~ 120 (137)
T cd03424 108 PLDEALELLADGE 120 (137)
T ss_pred cHHHHHHHHHcCC
Confidence 9999999876554
No 40
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=6.4e-18 Score=105.98 Aligned_cols=83 Identities=20% Similarity=0.284 Sum_probs=56.0
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc-c-ccccCCcceeEEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL-A-EWPEKNVRSRKWM 78 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~-~~~~~e~~~~~W~ 78 (121)
|.+|||++++|||+++||.||++||||+.+..... ++...+...... ....+|.+...... . ....+|..+++|+
T Consensus 29 w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~ 105 (127)
T cd04670 29 WKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSV-VGFRHAHPGAFG--KSDLYFICRLKPLSFDINFDTSEIAAAKWM 105 (127)
T ss_pred EECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEE-EEEEecCCCCcC--ceeEEEEEEEccCcCcCCCChhhhheeEEE
Confidence 89999999999999999999999999999876664 554332211111 12233444443211 1 1223567789999
Q ss_pred eHHHHHHh
Q 033333 79 SVAEARKV 86 (121)
Q Consensus 79 ~~~~l~~~ 86 (121)
+++++.+.
T Consensus 106 ~~~el~~~ 113 (127)
T cd04670 106 PLEEYISQ 113 (127)
T ss_pred cHHHHhcc
Confidence 99999665
No 41
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=3.9e-18 Score=105.81 Aligned_cols=81 Identities=22% Similarity=0.227 Sum_probs=58.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.||||++++||++++||+||++||||+++..... ++.+.+.. . .....++|.+....... ..+|..+++|+++
T Consensus 29 w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~-l~~~~~~~--~-~~~~~~~~~~~~~~~~~--~~~E~~~~~W~~~ 102 (117)
T cd04691 29 LNIPGGHIEAGESQEEALLREVQEELGVDPLSYTY-LCSLYHPT--S-ELQLLHYYVVTFWQGEI--PAQEAAEVHWMTA 102 (117)
T ss_pred EECcceeecCCCCHHHHHHHHHHHHHCCCcccceE-EEEEeccC--C-CeEEEEEEEEEEecCCC--CcccccccEEcCH
Confidence 89999999999999999999999999999754444 55543322 1 22345666666543322 2367888999999
Q ss_pred HHHHHhc
Q 033333 81 AEARKVC 87 (121)
Q Consensus 81 ~~l~~~~ 87 (121)
++++.+.
T Consensus 103 ~~l~~~~ 109 (117)
T cd04691 103 NDIVLAS 109 (117)
T ss_pred HHcchhh
Confidence 9998654
No 42
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=1.9e-18 Score=108.18 Aligned_cols=84 Identities=19% Similarity=0.198 Sum_probs=60.2
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccc---ccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEW---PEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~e~~~~~W 77 (121)
|.+|||+++.||++++||+||++||||+.+....+ ++.... . .....++|.+...+..... +..+..+++|
T Consensus 28 w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~-~~~~~~--~---~~~~~~~f~a~~~~g~~~~~~~~~~e~~~~~W 101 (123)
T cd04671 28 WYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTL-LSVEEQ--G---GSWFRFVFTGNITGGDLKTEKEADSESLQARW 101 (123)
T ss_pred EECceeecCCCCCHHHHHHHHHHHHHCCeeecceE-EEEEcc--C---CeEEEEEEEEEEeCCeEccCCCCCcceEEEEE
Confidence 89999999999999999999999999999987766 654321 1 2234567777655432211 2245668999
Q ss_pred EeHHHHHHhcCch
Q 033333 78 MSVAEARKVCQHW 90 (121)
Q Consensus 78 ~~~~~l~~~~~~~ 90 (121)
+++++++..+...
T Consensus 102 ~~~~el~~~~~~~ 114 (123)
T cd04671 102 YSNKDLPLPLRAH 114 (123)
T ss_pred ECHHHCCCccchh
Confidence 9999995444433
No 43
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.74 E-value=9.2e-18 Score=105.32 Aligned_cols=87 Identities=22% Similarity=0.089 Sum_probs=58.3
Q ss_pred CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeecc-eeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEE
Q 033333 1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECE-LLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWM 78 (121)
Q Consensus 1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~~-~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~ 78 (121)
|.+| ||++++||++ +||+||++||||+.+..... .++.+.+... .....++|.+...........+|..+++|+
T Consensus 30 w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~E~~~~~w~ 105 (127)
T cd04693 30 WDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAE---GFDDYYLFYADVEIGKLILQKEEVDEVKFV 105 (127)
T ss_pred ccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecC---CeEEEEEEEecCcccccccCHHHhhhEEEe
Confidence 8897 9999999999 99999999999999764332 1344433221 122233444433332222233677889999
Q ss_pred eHHHHHHhcCchh
Q 033333 79 SVAEARKVCQHWW 91 (121)
Q Consensus 79 ~~~~l~~~~~~~~ 91 (121)
+++++.+++.+..
T Consensus 106 ~~~el~~~~~~~~ 118 (127)
T cd04693 106 SKDEIDGLIGHGE 118 (127)
T ss_pred CHHHHHHHHhcCC
Confidence 9999999876553
No 44
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.74 E-value=2.5e-17 Score=109.26 Aligned_cols=101 Identities=25% Similarity=0.302 Sum_probs=68.8
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeHH
Q 033333 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVA 81 (121)
Q Consensus 2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ 81 (121)
.+|||++++||++.+||+|||+||||+.+..... ++.+.+... .......+|.+.... ......+|..+++|++++
T Consensus 69 ~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~-~~~~~~~E~~~~~W~~~~ 144 (180)
T PRK15393 69 ATAGGVVQAGEQLLESARREAEEELGIAGVPFAE-HGQFYFEDE--NCRVWGALFSCVSHG-PFALQEEEVSEVCWMTPE 144 (180)
T ss_pred ccCCCcCCCCCCHHHHHHHHHHHHHCCCCcccee-ceeEEecCC--CceEEEEEEEEEeCC-CCCCChHHeeEEEECCHH
Confidence 6899999999999999999999999998665554 666544322 222333456554332 222233577889999999
Q ss_pred HHHHhc--CchhHHHHHHHHHHHhccc
Q 033333 82 EARKVC--QHWWMKEALDRLVMRLTSQ 106 (121)
Q Consensus 82 ~l~~~~--~~~~~~~~~~~~~~~~~~~ 106 (121)
++.++. ..+.....+...+.+..+.
T Consensus 145 el~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (180)
T PRK15393 145 EITARCDEFTPDSLKALALWLTRNAKN 171 (180)
T ss_pred HHhhhhhhcCccHHHHHHHHHHhhccc
Confidence 999873 3355566666666655543
No 45
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=2e-17 Score=103.79 Aligned_cols=86 Identities=23% Similarity=0.308 Sum_probs=63.2
Q ss_pred Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333 1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~ 79 (121)
|.+ |||++++||++++||+||++||||+.+..... ++.+.+... ......++|.+...... ....+|..+++|++
T Consensus 30 w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~-~~~~~E~~~~~w~~ 105 (126)
T cd04697 30 WDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTP-LGLFYYDTD--GNRVWGKVFSCVYDGPL-KLQEEEVEEITWLS 105 (126)
T ss_pred ccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEE-eeEEEecCC--CceEEEEEEEEEECCCC-CCCHhHhhheEEcC
Confidence 778 69999999999999999999999999876555 666654332 22334466766654322 22336778899999
Q ss_pred HHHHHHhcCch
Q 033333 80 VAEARKVCQHW 90 (121)
Q Consensus 80 ~~~l~~~~~~~ 90 (121)
++++.+++...
T Consensus 106 ~~el~~~~~~~ 116 (126)
T cd04697 106 INEILQFKEGE 116 (126)
T ss_pred HHHHHHHhhcC
Confidence 99999987654
No 46
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=1.5e-17 Score=103.74 Aligned_cols=85 Identities=21% Similarity=0.079 Sum_probs=60.1
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc-cccccCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL-AEWPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~~~~~e~~~~~W~~ 79 (121)
|.||||+++.||++++||.||++||||+.+..... .....+... ......++|.+...... .....+|..+++|++
T Consensus 31 w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~f~~~~~~~~~~~~~~~E~~~~~W~~ 107 (122)
T cd04682 31 WDLPGGHREGGETPLECVLRELLEEIGLTLPESRI-PWFRVYPSA--SPPGTEHVFVVPLTAREDAILFGDEGQALRLMT 107 (122)
T ss_pred EeCCCccccCCCCHHHHHHHHHHHHhCCccccccc-ceeEecccC--CCCceEEEEEEEEecCCCccccCchhheeeccc
Confidence 89999999999999999999999999999864333 222223222 12234567776655443 223346778899999
Q ss_pred HHHHHHhcC
Q 033333 80 VAEARKVCQ 88 (121)
Q Consensus 80 ~~~l~~~~~ 88 (121)
++++.+..+
T Consensus 108 ~~el~~~~~ 116 (122)
T cd04682 108 VEEFLAHED 116 (122)
T ss_pred HHHHhhccc
Confidence 999977643
No 47
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.73 E-value=3.6e-17 Score=103.44 Aligned_cols=97 Identities=16% Similarity=0.070 Sum_probs=71.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.||||++++||++.+||.||++||||+.+..... ++.+.+... +.....++|.+...... ....+..+++|+++
T Consensus 32 w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~ 106 (135)
T PRK10546 32 WEFAGGKVEPGESQPQALIRELREELGIEATVGEY-VASHQREVS--GRRIHLHAWHVPDFHGE--LQAHEHQALVWCTP 106 (135)
T ss_pred EECCcccCCCCCCHHHHHHHHHHHHHCCcccccee-EEEEEEecC--CcEEEEEEEEEEEecCc--ccccccceeEEcCH
Confidence 89999999999999999999999999999877665 666554433 23334455655543222 12235667899999
Q ss_pred HHHHHhcCchhHHHHHHHHHHH
Q 033333 81 AEARKVCQHWWMKEALDRLVMR 102 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~ 102 (121)
+++..+...+..+.++..+.+.
T Consensus 107 ~el~~~~~~~~~~~~l~~~~~~ 128 (135)
T PRK10546 107 EEALRYPLAPADIPLLEAFMAL 128 (135)
T ss_pred HHcccCCCCcCcHHHHHHHHHh
Confidence 9999987778788888777665
No 48
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.73 E-value=2.1e-17 Score=114.86 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=65.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.+|||++++|||+++||+||++||||+++..... ++...+..+ ....+.|.+...........+|..+++|+++
T Consensus 158 wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~-~~s~~~~~p----~~lm~~f~a~~~~~~~~~~~~Ei~~a~W~~~ 232 (256)
T PRK00241 158 YTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRY-VGSQPWPFP----HSLMLGFHADYDSGEIVFDPKEIADAQWFRY 232 (256)
T ss_pred EeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEE-EEeEeecCC----CeEEEEEEEEecCCcccCCcccEEEEEEECH
Confidence 88999999999999999999999999999887776 665443222 2345677777654432223357788999999
Q ss_pred HHHHHhcCchhHH
Q 033333 81 AEARKVCQHWWMK 93 (121)
Q Consensus 81 ~~l~~~~~~~~~~ 93 (121)
++++.+.....+.
T Consensus 233 del~~lp~~~sia 245 (256)
T PRK00241 233 DELPLLPPSGTIA 245 (256)
T ss_pred HHCcccCCchHHH
Confidence 9998876555433
No 49
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.73 E-value=1.1e-17 Score=108.83 Aligned_cols=83 Identities=20% Similarity=0.073 Sum_probs=59.7
Q ss_pred CccCCcccCCC-CCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEE
Q 033333 1 MLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWM 78 (121)
Q Consensus 1 W~lPgG~ve~g-E~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~ 78 (121)
|.||||++++| |++++||+||++||||+.+..... ++.+.......+ ..+++|.+.........++ +|..+++|+
T Consensus 34 w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~-l~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~E~~~~~W~ 110 (157)
T cd03426 34 VAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEV-LGRLPPYYTRSG--FVVTPVVGLVPPPLPLVLNPDEVAEVFEV 110 (157)
T ss_pred EECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEE-EEECCCccccCC--CEEEEEEEEECCCCCCCCCHHHhheeEEE
Confidence 88999999999 999999999999999999877666 665442222222 2345555554443222223 577889999
Q ss_pred eHHHHHHh
Q 033333 79 SVAEARKV 86 (121)
Q Consensus 79 ~~~~l~~~ 86 (121)
+++++.+.
T Consensus 111 ~~~el~~~ 118 (157)
T cd03426 111 PLSFLLDP 118 (157)
T ss_pred cHHHHhCc
Confidence 99999875
No 50
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.72 E-value=2.5e-17 Score=109.67 Aligned_cols=91 Identities=20% Similarity=0.011 Sum_probs=66.2
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccc-cCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWP-EKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~~ 79 (121)
|+||||.+|+||++++||+||++||||+.+..... ++.+... + +......++|.+.......... +.|..+..|++
T Consensus 76 ~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~-l~~~~~~-~-~~~~~~~~~f~a~~~~~~~~~~~e~E~i~~~~~~ 152 (185)
T PRK11762 76 LGFPKGLIDPGETPLEAANRELKEEVGFGARQLTF-LKELSLA-P-SYFSSKMNIVLAEDLYPERLEGDEPEPLEVVRWP 152 (185)
T ss_pred EEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEE-EEEEecC-C-CccCcEEEEEEEEccccccCCCCCCceeEEEEEc
Confidence 78999999999999999999999999999988877 7775432 2 2223345666665432222222 35667889999
Q ss_pred HHHHHHhcCchhHHH
Q 033333 80 VAEARKVCQHWWMKE 94 (121)
Q Consensus 80 ~~~l~~~~~~~~~~~ 94 (121)
++++.+++.++.+.+
T Consensus 153 ~~e~~~~~~~g~i~d 167 (185)
T PRK11762 153 LADLDELLARPDFSE 167 (185)
T ss_pred HHHHHHHHHcCCCCc
Confidence 999999877665543
No 51
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=4.1e-17 Score=103.10 Aligned_cols=85 Identities=26% Similarity=0.323 Sum_probs=57.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCcee-eeecceeeeeEeeeC--CC-C--CeeEEEEEEeEeccccccc-cc-CC-
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGEWNFKSR--AH-N--TDYQGYMFPLLVQDQLAEW-PE-KN- 71 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~-~~~~~~l~~~~~~~~--~~-~--~~~~~~~f~~~~~~~~~~~-~~-~e- 71 (121)
|.||||++++||++.+||+||++||||+.+ ..... ++.+..... .. . .+...++|.+......... .. .+
T Consensus 24 w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 102 (131)
T cd04686 24 YKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEK-FGTYTERRPWRKPDADIFHMISYYYLCEVDAELGAQQLEDYEA 102 (131)
T ss_pred EECccccCCCCCCHHHHHHHHHHHHHCCcccccceE-EEEEEeeccccCCCCceeEEEEEEEEEEEcCCcCCcccchhhH
Confidence 899999999999999999999999999986 44444 666542211 11 1 1334577777765433211 11 11
Q ss_pred --cceeEEEeHHHHHHh
Q 033333 72 --VRSRKWMSVAEARKV 86 (121)
Q Consensus 72 --~~~~~W~~~~~l~~~ 86 (121)
...++|++++++...
T Consensus 103 ~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 103 ELGMKPIWINIHEAIEH 119 (131)
T ss_pred hcCCCcEEecHHHHHHh
Confidence 235899999999764
No 52
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.71 E-value=4.1e-17 Score=102.88 Aligned_cols=78 Identities=21% Similarity=0.177 Sum_probs=60.1
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.+|||++++||++++||.||++||||+++..... ++.+.. + ......++|.+...... .....|..+++|+++
T Consensus 40 w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~-~~~~~~--~--~~~~~~~~f~~~~~~~~-~~~~~e~~~~~~~~~ 113 (130)
T cd04511 40 WTLPAGFMENGETTEQGALRETWEEAGARVEIDGL-YAVYSV--P--HISQVYMFYRARLLDLD-FAPGPESLEVRLFTE 113 (130)
T ss_pred EECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeE-EEEEec--C--CceEEEEEEEEEEcCCc-ccCCcchhceEEECH
Confidence 89999999999999999999999999999876655 665543 2 22345577888775543 234456788999999
Q ss_pred HHHH
Q 033333 81 AEAR 84 (121)
Q Consensus 81 ~~l~ 84 (121)
++++
T Consensus 114 ~~l~ 117 (130)
T cd04511 114 EEIP 117 (130)
T ss_pred HHCC
Confidence 9996
No 53
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=5.9e-17 Score=103.81 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=59.8
Q ss_pred Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeC-CC--CCeeEEEEEEeEeccc--ccccccCCc
Q 033333 1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSR-AH--NTDYQGYMFPLLVQDQ--LAEWPEKNV 72 (121)
Q Consensus 1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~-~~--~~~~~~~~f~~~~~~~--~~~~~~~e~ 72 (121)
|.+ |||++++||++++||+||++||||+.+.. +.. ++.+.+... .. ......++|.+..... ......+|.
T Consensus 35 W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~E~ 113 (144)
T cd04692 35 WDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIP-LGTFKIEYDHIGKLIDREFHHVYLYELKVPLEEFTLQKEEV 113 (144)
T ss_pred cccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEE-eeEEEEeccccCCCccceEEEEEEEeccCChhhcCCChhHh
Confidence 778 59999999999999999999999998643 333 555544332 11 1123446666665431 222233677
Q ss_pred ceeEEEeHHHHHHhcC
Q 033333 73 RSRKWMSVAEARKVCQ 88 (121)
Q Consensus 73 ~~~~W~~~~~l~~~~~ 88 (121)
.+++|++++++.+++.
T Consensus 114 ~~~~W~~~~el~~~~~ 129 (144)
T cd04692 114 AGVVLIPLDEFAELLE 129 (144)
T ss_pred heEEEECHHHHHHHHH
Confidence 8899999999988753
No 54
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.70 E-value=1.5e-16 Score=114.71 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=66.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeee------eEeeeCCCCCeeEEEEEEeEecccc--cccccCCc
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGE------WNFKSRAHNTDYQGYMFPLLVQDQL--AEWPEKNV 72 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~------~~~~~~~~~~~~~~~~f~~~~~~~~--~~~~~~e~ 72 (121)
|.+|||++++||++++||+||++||||+++..... .+. +.++..........++|.+...... .....++.
T Consensus 230 W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l-~~~~~~~~~f~~p~r~~~~~~i~~~f~~~~~~~~~~~~~~~de~ 308 (340)
T PRK05379 230 WALPGGFLEQDETLLDACLRELREETGLKLPEPVL-RGSIRDQQVFDHPGRSLRGRTITHAFLFEFPAGELPRVKGGDDA 308 (340)
T ss_pred EECCcccCCCCCCHHHHHHHHHHHHHCCccccccc-ceeeeeeEEEcCCCCCCCCcEEEEEEEEEecCCccCccCCCCce
Confidence 89999999999999999999999999998755443 332 2222221122345566766654332 12234677
Q ss_pred ceeEEEeHHHHHHh--cCchhHHHHHHHHH
Q 033333 73 RSRKWMSVAEARKV--CQHWWMKEALDRLV 100 (121)
Q Consensus 73 ~~~~W~~~~~l~~~--~~~~~~~~~~~~~~ 100 (121)
.+++|++++++..+ ....+...++..++
T Consensus 309 ~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 309 DKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred eeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 88999999999875 33455556665543
No 55
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.70 E-value=1.3e-16 Score=104.48 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=62.5
Q ss_pred CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeeccee-eeeEeeeCCCC---CeeEEEEEEeEecccccccccCCccee
Q 033333 1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELL-GEWNFKSRAHN---TDYQGYMFPLLVQDQLAEWPEKNVRSR 75 (121)
Q Consensus 1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l-~~~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~e~~~~ 75 (121)
|.+| ||++++||++++||+||++||||+.+..... + +.+.|...... ...+.++|.+....... ...+|..++
T Consensus 60 w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~-~~~~Ev~~~ 137 (165)
T cd02885 60 WTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLEL-VLPRFRYRAPDDGGLVEHEIDHVFFARADVTLI-PNPDEVSEY 137 (165)
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhh-ccceEEEEEEcCCCceeeEEEEEEEEEeCCCCC-CCccceeEE
Confidence 6665 7999999999999999999999999877665 4 55544432211 12345667666544332 233677889
Q ss_pred EEEeHHHHHHhcCch
Q 033333 76 KWMSVAEARKVCQHW 90 (121)
Q Consensus 76 ~W~~~~~l~~~~~~~ 90 (121)
+|++++++.+++...
T Consensus 138 ~w~~~~el~~~~~~~ 152 (165)
T cd02885 138 RWVSLEDLKELVAAA 152 (165)
T ss_pred EEECHHHHHHHHHhC
Confidence 999999999986543
No 56
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=2e-16 Score=98.97 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=57.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCC-CeeEEEEEEeEecccccccccCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHN-TDYQGYMFPLLVQDQLAEWPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~ 79 (121)
|.||||++++||++.+||.||++||||+.+..... ++...+. .... .....++|.+..... .....++..+++|++
T Consensus 31 w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~w~~ 107 (129)
T cd04699 31 WELPGGKVEEGETFEEALKREVYEETGLTVTPFLR-YPSTVTH-EDSGVYNVIYLVFVCEALSG-AVKLSDEHEEYAWVT 107 (129)
T ss_pred CcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee-eeEEEEE-cCCCEEEEEEEEEEeeecCC-cccCChhheEEEEec
Confidence 89999999999999999999999999999877654 3332222 2221 223334455443332 122335667889999
Q ss_pred HHHHHHhcC
Q 033333 80 VAEARKVCQ 88 (121)
Q Consensus 80 ~~~l~~~~~ 88 (121)
++++..+..
T Consensus 108 ~~el~~~~~ 116 (129)
T cd04699 108 LEELAILKA 116 (129)
T ss_pred HHHhhhhhc
Confidence 999965543
No 57
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.70 E-value=2e-16 Score=102.80 Aligned_cols=103 Identities=17% Similarity=0.194 Sum_probs=68.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeee----EeeeCC-------CCC-eeEEEEEEeEeccc-cc--
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEW----NFKSRA-------HNT-DYQGYMFPLLVQDQ-LA-- 65 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~----~~~~~~-------~~~-~~~~~~f~~~~~~~-~~-- 65 (121)
|.+|||++++||++++||.||++||||+.+..... ++.+ .|..+. ... ....++|++..... ..
T Consensus 34 w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~-~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~ 112 (156)
T PRK00714 34 WQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEI-LAETRDWLRYDLPKRLVRRSKGVYRGQKQKWFLLRLTGDDSEIN 112 (156)
T ss_pred EECCcccCCCCcCHHHHHHHHHHHHhCCCccceEE-EEEcCCeEEecCcHHHhhccCCcccCcEEEEEEEEecCCCcccc
Confidence 89999999999999999999999999999865554 5542 221111 000 11346677665322 11
Q ss_pred cc--ccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHhcc
Q 033333 66 EW--PEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRLTS 105 (121)
Q Consensus 66 ~~--~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 105 (121)
.. ..+|..+++|++++++++++. +..+.++..+.+.+..
T Consensus 113 l~~~~~~E~~~~~W~~~del~~~~~-~~~r~~~~~~~~~~~~ 153 (156)
T PRK00714 113 LNTTSHPEFDAWRWVSYWYPLDQVV-PFKRDVYRRVLKEFAR 153 (156)
T ss_pred CCCCCCCCeeeeEeCCHHHHHHhch-hhhHHHHHHHHHHHHH
Confidence 11 225778899999999998764 3346677776666543
No 58
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.70 E-value=6.5e-17 Score=107.68 Aligned_cols=92 Identities=21% Similarity=0.122 Sum_probs=68.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc----ccccCCcceeE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA----EWPEKNVRSRK 76 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~----~~~~~e~~~~~ 76 (121)
|.||||++++||++++||+||++||||+.+..... ++.+ +..+ +......++|++....... ...++|..+..
T Consensus 79 lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~-~~~~-~~~~-g~~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~ 155 (185)
T TIGR00052 79 LELSAGMVEKGESPEDVARREAIEEAGYQVKNLRK-LLSF-YSSP-GGVTELIHLFIAEVDDNQAAGIGGGADEEEIEVL 155 (185)
T ss_pred EEECcEecCCCCCHHHHHHHHccccccceecceEE-EEEE-EcCC-CCCcEEEEEEEEEEchhhcCCCCCCCCccceEEE
Confidence 68999999999999999999999999999987666 6654 2222 3334567888887654321 11235667789
Q ss_pred EEeHHHHHHhcCchhHHHH
Q 033333 77 WMSVAEARKVCQHWWMKEA 95 (121)
Q Consensus 77 W~~~~~l~~~~~~~~~~~~ 95 (121)
|++++++.+++.++.+.+.
T Consensus 156 ~~~~~e~~~~~~~G~i~d~ 174 (185)
T TIGR00052 156 HLVFSQALQWIKEGKIDNG 174 (185)
T ss_pred EeCHHHHHHHHHcCCCCCH
Confidence 9999999999877765544
No 59
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.68 E-value=3.4e-16 Score=105.50 Aligned_cols=91 Identities=20% Similarity=0.125 Sum_probs=66.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccc----ccccc-cCCccee
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ----LAEWP-EKNVRSR 75 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~~-~~e~~~~ 75 (121)
|++|+|.+|+||++++||+|||.||||+.+..... ++.+ +.++ +......++|++..... ..... ..|..++
T Consensus 84 lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~-l~~~-~~sp-g~~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v 160 (202)
T PRK10729 84 LEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKP-VLSY-LASP-GGTSERSSIMVGEVDATTASGIHGLADENEDIRV 160 (202)
T ss_pred EEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEE-EEEE-EcCC-CcCceEEEEEEEEEcchhcccCCCCCCCCCceEE
Confidence 78999999999999999999999999999887666 6554 3323 33345668888875221 11122 2566789
Q ss_pred EEEeHHHHHHhcCchhHHH
Q 033333 76 KWMSVAEARKVCQHWWMKE 94 (121)
Q Consensus 76 ~W~~~~~l~~~~~~~~~~~ 94 (121)
.|++++++.+++.++.+.+
T Consensus 161 ~~~~~~e~~~~~~~G~i~d 179 (202)
T PRK10729 161 HVVSREQAYQWVEEGKIDN 179 (202)
T ss_pred EEEcHHHHHHHHHcCCCCc
Confidence 9999999999877665553
No 60
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.67 E-value=5.6e-16 Score=96.87 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=66.0
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.||||++++||++.+||.||++||||+.+..... ++.+.+..++ .....++|.+...... ....|..+.+|+++
T Consensus 33 w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~e~~~~~W~~~ 107 (129)
T PRK10776 33 WEFPGGKIEAGETPEQALIRELQEEVGITVQHATL-FEKLEYEFPD--RHITLWFWLVESWEGE--PWGKEGQPGRWVSQ 107 (129)
T ss_pred EECCceecCCCCCHHHHHHHHHHHHHCCceecceE-EEEEEeeCCC--cEEEEEEEEEEEECCc--cCCccCCccEEecH
Confidence 89999999999999999999999999998766555 6665554432 2233445555433222 12235667899999
Q ss_pred HHHHHhcCchhHHHHHHHH
Q 033333 81 AEARKVCQHWWMKEALDRL 99 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~ 99 (121)
+++..+...+.++.++..+
T Consensus 108 ~~l~~~~~p~~~~~~~~~~ 126 (129)
T PRK10776 108 VALNADEFPPANEPIIAKL 126 (129)
T ss_pred HHCccCCCCcccHHHHHHH
Confidence 9998876666666666554
No 61
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.66 E-value=1.5e-15 Score=98.28 Aligned_cols=98 Identities=23% Similarity=0.267 Sum_probs=71.0
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeE-EEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRK-WMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~-W~~ 79 (121)
|.+|||++++||++++||.||++||||+.+..... ++.+..... ......++|.+...... +.++..+.. +++
T Consensus 47 ~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~-lg~~~~~~~--~~~~~~~vf~A~~~~~~---~~~e~~E~~~~~~ 120 (156)
T TIGR02705 47 LEFPGGKVEPGETSKEAAIREVMEETGAIVKELHY-IGQYEVEGE--STDFVKDVYFAEVSALE---SKDDYLETKGPVL 120 (156)
T ss_pred EECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEE-EEEEEecCC--CcEEEEEEEEEEEeccc---cCCCceeeEeEEE
Confidence 78999999999999999999999999999988887 887654322 24456678888776432 235666666 799
Q ss_pred HHHHHHhcCchh-----HH-HHHHHHHHHhc
Q 033333 80 VAEARKVCQHWW-----MK-EALDRLVMRLT 104 (121)
Q Consensus 80 ~~~l~~~~~~~~-----~~-~~~~~~~~~~~ 104 (121)
++++.+++.... ++ ..+..+++++.
T Consensus 121 ~~~~~~~~~~g~~~s~~~~d~~~~~~~~~~~ 151 (156)
T TIGR02705 121 LQEIPDIIKADPRFSFIMKDDVLLKCLERAK 151 (156)
T ss_pred HHHHHHHHhcCCcccEEEchHHHHHHHHHHH
Confidence 999988754332 12 34555555553
No 62
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.66 E-value=1.1e-15 Score=94.66 Aligned_cols=93 Identities=17% Similarity=0.088 Sum_probs=67.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.||||+++.+|+++++|.||++||||+.+..... ++.+.+..+ +.....++|.+....... ...+..+.+|+++
T Consensus 30 w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~e~~~~~W~~~ 104 (124)
T cd03425 30 WEFPGGKVEPGETPEQALVRELREELGIEVEVGEL-LATVEHDYP--DKRVTLHVFLVELWSGEP--QLLEHQELRWVPP 104 (124)
T ss_pred EeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccce-EEEEEeeCC--CCeEEEEEEEEeeeCCCc--ccccCceEEEeeH
Confidence 89999999999999999999999999999877665 776655443 233445666665443221 1345667899999
Q ss_pred HHHHHhcCchhHHHHHHH
Q 033333 81 AEARKVCQHWWMKEALDR 98 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~ 98 (121)
+++..+...+.++.+++.
T Consensus 105 ~el~~~~~~~~~~~~l~~ 122 (124)
T cd03425 105 EELDDLDFPPADVPIVAA 122 (124)
T ss_pred HHcccCCCCcccHHHHHh
Confidence 999887666655555543
No 63
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.66 E-value=3.9e-16 Score=97.02 Aligned_cols=80 Identities=20% Similarity=0.208 Sum_probs=63.0
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.+|||++++||++++||.||++||||+.+..... ++.+..... .......+|.+.........+..|.....|++.
T Consensus 23 w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~-l~~~~~~~~--~~~~~~~~y~a~~~~~~~~~~~~E~~~~~~~~~ 99 (118)
T cd04665 23 WEFPGGHVEPGETIEEAARREVWEETGAELGSLTL-VGYYQVDLF--ESGFETLVYPAVSAQLEEKASYLETDGPVLFKN 99 (118)
T ss_pred EECCccccCCCCCHHHHHHHHHHHHHCCccCceEE-EEEEEecCC--CCcEEEEEEEEEEEecccccccccccCcEEecc
Confidence 89999999999999999999999999999977776 887765432 233455777777766555456678888999986
Q ss_pred HHH
Q 033333 81 AEA 83 (121)
Q Consensus 81 ~~l 83 (121)
+..
T Consensus 100 ~~~ 102 (118)
T cd04665 100 EPE 102 (118)
T ss_pred CCc
Confidence 655
No 64
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.65 E-value=7.9e-16 Score=102.42 Aligned_cols=89 Identities=17% Similarity=0.177 Sum_probs=59.7
Q ss_pred CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCC-CCC--eeEEEEEEeEecccccccccCCcceeE
Q 033333 1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRA-HNT--DYQGYMFPLLVQDQLAEWPEKNVRSRK 76 (121)
Q Consensus 1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~-~~~--~~~~~~f~~~~~~~~~~~~~~e~~~~~ 76 (121)
|.+| ||++++||++++||+||++||||+++......++.+.+.... .+. ....++|.+..... .....+|..+++
T Consensus 64 w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vf~~~~~~~-~~~~~~Ev~~~~ 142 (184)
T PRK03759 64 WTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPNGIVENEVCPVFAARVTSA-LQPNPDEVMDYQ 142 (184)
T ss_pred ccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCCCceeeEEEEEEEEEECCC-CCCChhHeeeEE
Confidence 4443 799999999999999999999999986433225555443221 111 23456777765532 222235778899
Q ss_pred EEeHHHHHHhcCch
Q 033333 77 WMSVAEARKVCQHW 90 (121)
Q Consensus 77 W~~~~~l~~~~~~~ 90 (121)
|++++++.+++...
T Consensus 143 W~~~~el~~~i~~~ 156 (184)
T PRK03759 143 WVDPADLLRAVDAT 156 (184)
T ss_pred EECHHHHHHHHHhC
Confidence 99999999986533
No 65
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.65 E-value=6.2e-16 Score=95.14 Aligned_cols=87 Identities=24% Similarity=0.365 Sum_probs=64.7
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccc-cccCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAE-WPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~-~~~~e~~~~~W~~ 79 (121)
|.+|||+++.||++.++|.||+.||+|+.+..... ++.+.+.....+.....++|.+........ ....+..+.+|++
T Consensus 27 ~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~w~~ 105 (123)
T cd02883 27 WELPGGGVEPGETLEEAAIREVREETGLDVDVLRL-LGVYEVESPDEGEHAVVFVFLARLVGGEPTLLPPDEISEVRWVT 105 (123)
T ss_pred EeCCcccccCCCCHHHHHHHHHHHhhCccceeeeE-EEEEEeeccCCCceEEEEEEEEEeCCCCcCCCCCCccceEEEEc
Confidence 88999999999999999999999999999875554 666665544334455667787776654332 2235666789999
Q ss_pred HHHHHHhcC
Q 033333 80 VAEARKVCQ 88 (121)
Q Consensus 80 ~~~l~~~~~ 88 (121)
++++.++..
T Consensus 106 ~~~l~~~~~ 114 (123)
T cd02883 106 LDELPALAL 114 (123)
T ss_pred HHHCccccc
Confidence 999987543
No 66
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.64 E-value=8.1e-16 Score=101.96 Aligned_cols=92 Identities=18% Similarity=0.237 Sum_probs=64.4
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHhCceeeee---cceeeeeEeeeC-CCC--CeeEEEEEEeEecccccccc-cCCcce
Q 033333 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVE---CELLGEWNFKSR-AHN--TDYQGYMFPLLVQDQLAEWP-EKNVRS 74 (121)
Q Consensus 2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~---~~~l~~~~~~~~-~~~--~~~~~~~f~~~~~~~~~~~~-~~e~~~ 74 (121)
.+|||++++||++.+||+||++||||+.+... .. ++.+.|... ... .....++|.+.........+ .+|..+
T Consensus 68 ~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~-~g~~~~~~~~~~~~~~~e~~~~f~~~~~~~~~~~~~~~Ev~~ 146 (180)
T cd03676 68 NLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKP-VGVVSYLREGEAGGLQPEVEYVYDLELPPDFIPAPQDGEVES 146 (180)
T ss_pred eecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhcee-ccEEEEEEEcCCCcEeeeEEEEEEEEcCCCCeeCCCCCcEeE
Confidence 48999999999999999999999999997653 23 555444432 222 23455677766543322223 367788
Q ss_pred eEEEeHHHHHHhcCchhHHH
Q 033333 75 RKWMSVAEARKVCQHWWMKE 94 (121)
Q Consensus 75 ~~W~~~~~l~~~~~~~~~~~ 94 (121)
+.|++++++.+++....+.+
T Consensus 147 ~~~~~~~el~~~l~~g~~~~ 166 (180)
T cd03676 147 FRLLTIDEVLRALKEGEFKP 166 (180)
T ss_pred EEEECHHHHHHHHHcCCCCc
Confidence 99999999999877665544
No 67
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=1.8e-15 Score=94.60 Aligned_cols=93 Identities=14% Similarity=-0.046 Sum_probs=65.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.||||+++.||++++++.||++||||+.+..... ++.+.+... +.....++|.+...+... ...+..+.+|+++
T Consensus 33 w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~-~~~~~h~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~W~~~ 107 (128)
T TIGR00586 33 LEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEF-EKLEYEFYP--RHITLWFWLLERWEGGPP--GKEGQPEEWWVLV 107 (128)
T ss_pred EECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeE-EEEEEEECC--CcEEEEEEEEEEEcCCCc--CcccccccEEeCH
Confidence 89999999999999999999999999999877665 666555433 223344556555443221 1234456899999
Q ss_pred HHHHHhcCchhHHHHHHH
Q 033333 81 AEARKVCQHWWMKEALDR 98 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~ 98 (121)
+++.++.....++.+++.
T Consensus 108 ~~l~~~~~p~~~~~~~~~ 125 (128)
T TIGR00586 108 GLLADDFFPAANPVIIKL 125 (128)
T ss_pred HHCCccCCCCCCHHHHHH
Confidence 999987665555555543
No 68
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=1.4e-15 Score=97.53 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=57.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeee----cceeeeeEeeeCC----C--CCeeEEEEEEeEeccc-----cc
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVE----CELLGEWNFKSRA----H--NTDYQGYMFPLLVQDQ-----LA 65 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~----~~~l~~~~~~~~~----~--~~~~~~~~f~~~~~~~-----~~ 65 (121)
|.+|||++++||++.+||+||++||||+.+... .. ++.+.+..+. + .......+|.+..... ..
T Consensus 31 w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 109 (143)
T cd04694 31 WVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQV-LGLWESVYPPLLSRGLPKRHHIVVYILVKSSETHQQLQAR 109 (143)
T ss_pred EECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeE-EeeeccccccccCCCcccceeEEEEEEEEecccccccccc
Confidence 899999999999999999999999999997653 33 5554332221 1 1122222333322211 11
Q ss_pred ccc-cCCcceeEEEeHHHHHHhcCc
Q 033333 66 EWP-EKNVRSRKWMSVAEARKVCQH 89 (121)
Q Consensus 66 ~~~-~~e~~~~~W~~~~~l~~~~~~ 89 (121)
..+ .+|..+++|++++++.++...
T Consensus 110 ~~~~~~Ev~~~~Wv~~~~a~~~~~~ 134 (143)
T cd04694 110 LQPDPNEVSAAAWLDKSLAKAVVSA 134 (143)
T ss_pred ccCChhhccceEeeCHHHHHHHHHh
Confidence 122 267888999999999987643
No 69
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=1.6e-15 Score=96.11 Aligned_cols=85 Identities=24% Similarity=0.228 Sum_probs=57.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCcee-eeecceeeeeE--eeeCCCCCeeEEEEEEeEeccccccc-----cc-CC
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTG-IVECELLGEWN--FKSRAHNTDYQGYMFPLLVQDQLAEW-----PE-KN 71 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~-~~~~~~l~~~~--~~~~~~~~~~~~~~f~~~~~~~~~~~-----~~-~e 71 (121)
|.+|||+++.||++.+||.||++||||+.+ ..... +.... +...........++|.+......... .+ .+
T Consensus 30 w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~E~~~ 108 (133)
T cd04685 30 WFTPGGGVEPGESPEQAARRELREETGITVADLGPP-VWRRDAAFTFLGVDGRQEERFFLARTPRTEPSPAGWTALERRS 108 (133)
T ss_pred EECCcCCCCCCCCHHHHHHHHHHHHHCCccccccce-EEEEEEEEEecCccceeeEEEEEEEcCCccccCCCCChhhhhh
Confidence 889999999999999999999999999998 54443 43322 22222223345577887765422111 11 23
Q ss_pred cceeEEEeHHHHHHh
Q 033333 72 VRSRKWMSVAEARKV 86 (121)
Q Consensus 72 ~~~~~W~~~~~l~~~ 86 (121)
...++|++++++...
T Consensus 109 ~~~~~W~~~~el~~~ 123 (133)
T cd04685 109 ILGWRWWTRAELAAT 123 (133)
T ss_pred cccccCCCHHHHhhC
Confidence 446899999999875
No 70
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.61 E-value=1.2e-15 Score=95.54 Aligned_cols=88 Identities=22% Similarity=0.222 Sum_probs=51.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccc----cccc-ccCCc--c
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ----LAEW-PEKNV--R 73 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~----~~~~-~~~e~--~ 73 (121)
|.||||++++||++.+||+||++||||+.+......++.+.. .........+++.+..... .... ..++. .
T Consensus 26 ~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~E~~~i 103 (126)
T cd04663 26 FQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWER--RFYQKRHFWHLTLCEVDQDLPDSWVHFVQDDGGHEF 103 (126)
T ss_pred EECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeC--CEeeccEEEEEEEEEecCCCcccccCcccCCCCceE
Confidence 789999999999999999999999999997432221333221 1111112233344433211 1111 11233 3
Q ss_pred eeEEEeHHHHHHhcCch
Q 033333 74 SRKWMSVAEARKVCQHW 90 (121)
Q Consensus 74 ~~~W~~~~~l~~~~~~~ 90 (121)
.+.|++++++.....++
T Consensus 104 ~~~Wv~l~~~~~~~~~~ 120 (126)
T cd04663 104 RFFWVDLASCLDEFLHL 120 (126)
T ss_pred EEEEEccccccccceec
Confidence 45699999997655443
No 71
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.61 E-value=3.5e-15 Score=99.73 Aligned_cols=85 Identities=21% Similarity=0.170 Sum_probs=60.4
Q ss_pred CccCCcccCCC-CCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEE
Q 033333 1 MLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWM 78 (121)
Q Consensus 1 W~lPgG~ve~g-E~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~ 78 (121)
|.||||++|++ |++++||+||+.||||+.+..... ++.+.......+. .+..|.+.........++ +|..++.|+
T Consensus 62 ~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~-lg~l~~~~~~~~~--~~~~~v~~~~~~~~~~~d~~Ev~~v~~v 138 (190)
T PRK10707 62 VAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEV-IGVLPPVDSSTGY--QVTPVVGIIPPDLPYRANEDEVAAVFEM 138 (190)
T ss_pred EEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEE-EEEeeeeeccCCc--EEEEEEEEECCCCCCCCChhhhheEEEE
Confidence 78999999985 689999999999999999888777 8876533232222 334444433333333333 678889999
Q ss_pred eHHHHHHhcC
Q 033333 79 SVAEARKVCQ 88 (121)
Q Consensus 79 ~~~~l~~~~~ 88 (121)
+++++.++..
T Consensus 139 pl~e~~~~~~ 148 (190)
T PRK10707 139 PLAEALHLGR 148 (190)
T ss_pred eHHHHhCccc
Confidence 9999988643
No 72
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.61 E-value=3.1e-15 Score=93.54 Aligned_cols=31 Identities=35% Similarity=0.291 Sum_probs=29.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceee
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI 31 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~ 31 (121)
|.+|||+++.||++.+||+||++||||+.+.
T Consensus 35 W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 35 WSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred EECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 8999999999999999999999999999875
No 73
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.61 E-value=6.6e-15 Score=97.76 Aligned_cols=99 Identities=14% Similarity=0.058 Sum_probs=60.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeec----------------ceeeeeEeeeCCCC----CeeEEEEEEeEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC----------------ELLGEWNFKSRAHN----TDYQGYMFPLLV 60 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~----------------~~l~~~~~~~~~~~----~~~~~~~f~~~~ 60 (121)
|.||||++++||++.+||+||++||||+.+.... . +.+|..+..... ...+++.|.+..
T Consensus 62 walPGG~v~~~E~~~~aa~Rel~EEt~l~l~~~~~~~~~l~~l~~~~~~~~-~~vy~~~~~dpr~td~~w~~Tva~~f~~ 140 (186)
T cd03670 62 WAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDG-VEVYKGYVDDPRNTDNAWMETVAVNFHD 140 (186)
T ss_pred CcCCeeeccCCCCHHHHHHHHHHHHHcccccccchhhhhhcchhhhhcccc-cEEEeccccCCCCCCcceEEEEEEEEEe
Confidence 8999999999999999999999999976532211 1 223322222211 122334444433
Q ss_pred ccc-----ccccccCCcceeEEEeHHHHHHhcCchhHHHHHHHHHHH
Q 033333 61 QDQ-----LAEWPEKNVRSRKWMSVAEARKVCQHWWMKEALDRLVMR 102 (121)
Q Consensus 61 ~~~-----~~~~~~~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~ 102 (121)
... ......++..+++|+++++++.|+.+. ..++..+.+.
T Consensus 141 ~~~~~~~~~~~~a~dda~~a~W~~v~~l~~L~~dH--~~Il~~a~~~ 185 (186)
T cd03670 141 EDGNDVENLPLEAGDDAGSVRWQDIDSKLPLYANH--SQFLKKVAEL 185 (186)
T ss_pred cCcccccccccCCCCchheeEEEEcccccccccCH--HHHHHHHHHh
Confidence 211 112233677889999999998765544 4666665543
No 74
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.59 E-value=7.3e-15 Score=98.25 Aligned_cols=91 Identities=16% Similarity=0.017 Sum_probs=65.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccc-cc---cccCCcceeE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQL-AE---WPEKNVRSRK 76 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~-~~---~~~~e~~~~~ 76 (121)
|++|+|.+|+| ++++||+||++||||+.+..... ++.+ +.++ +......++|++...... .. ..++|..++.
T Consensus 81 lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~-l~~~-~~sp-G~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~ 156 (191)
T PRK15009 81 IETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRK-LFEL-YMSP-GGVTELIHFFIAEYSDSQRANAGGGVEDEDIEVL 156 (191)
T ss_pred EEEeccccCCC-CHHHHHHHHHHHhhCCccceEEE-eeEE-EcCC-cccCcEEEEEEEEECchhcccCCCCCCCceEEEE
Confidence 68999999976 69999999999999999887776 6654 3333 333445678888754221 11 1235677899
Q ss_pred EEeHHHHHHhcCchhHHHH
Q 033333 77 WMSVAEARKVCQHWWMKEA 95 (121)
Q Consensus 77 W~~~~~l~~~~~~~~~~~~ 95 (121)
|++++++.+++.++.+.+.
T Consensus 157 ~~~~~e~~~~i~~G~i~da 175 (191)
T PRK15009 157 ELPFSQALEMIKTGEIRDG 175 (191)
T ss_pred EEcHHHHHHHHHcCCCCcH
Confidence 9999999999876655543
No 75
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.58 E-value=1.2e-14 Score=94.52 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=59.0
Q ss_pred CccC-CcccCCCCCHHHHHHHHHHHHhCceeeeec--ceeeeeEeeeCCC-CCeeEEEEEEeEecccccccccCCcceeE
Q 033333 1 MLFP-KGGWEIDESIQEAALRETIEEAGVTGIVEC--ELLGEWNFKSRAH-NTDYQGYMFPLLVQDQLAEWPEKNVRSRK 76 (121)
Q Consensus 1 W~lP-gG~ve~gE~~~eaa~REl~EEtG~~~~~~~--~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~e~~~~~ 76 (121)
|.+| ||+++.|| .+||+||++||||+.+.... . ++.+.|..... +.....++|.+..... .....+|..+++
T Consensus 57 W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~-~~~~~~~~~~~~g~~~~~~~f~~~~~~~-~~~~~~Ev~~~~ 132 (158)
T TIGR02150 57 WTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTV-LPRFSYRARDAWGEHELCPVFFARAPVP-LNPNPEEVAEYR 132 (158)
T ss_pred ccccccCCCCccc--HHHHHHHHHHHHCCCccccceEE-cceEEEEEecCCCcEEEEEEEEEecCCc-ccCChhHeeeEE
Confidence 6665 79999999 49999999999999976543 2 44444433221 2344556777665442 222235888899
Q ss_pred EEeHHHHHHhcCch
Q 033333 77 WMSVAEARKVCQHW 90 (121)
Q Consensus 77 W~~~~~l~~~~~~~ 90 (121)
|++++++.+++..+
T Consensus 133 W~~~~el~~~~~~~ 146 (158)
T TIGR02150 133 WVSLEELKEILKAP 146 (158)
T ss_pred EeCHHHHHHHHhcC
Confidence 99999999987644
No 76
>PRK08999 hypothetical protein; Provisional
Probab=99.49 E-value=1.5e-13 Score=97.96 Aligned_cols=94 Identities=16% Similarity=0.059 Sum_probs=66.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.||||++++||++.++|.||++||||+.+..... ++.+.+..+ +.....++|.+...... ....+..+++|+++
T Consensus 34 w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~-l~~~~h~~~--~~~~~i~~y~~~~~~~~--~~~~e~~~~~Wv~~ 108 (312)
T PRK08999 34 WEFPGGKVEPGETVEQALARELQEELGIEVTAARP-LITVRHDYP--DKRVRLDVRRVTAWQGE--PHGREGQPLAWVAP 108 (312)
T ss_pred EECCccCCCCCCCHHHHHHHHHHHHhCCceeccee-EEEEEEEcC--CCeEEEEEEEEEEecCc--ccCccCCccEEecH
Confidence 89999999999999999999999999999876555 665554433 22334566665543222 12245667899999
Q ss_pred HHHHHhcCchhHHHHHHHH
Q 033333 81 AEARKVCQHWWMKEALDRL 99 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~~~~~ 99 (121)
+++.++...+.++.+++.+
T Consensus 109 ~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 109 DELAVYPFPPANQPIVRAL 127 (312)
T ss_pred HHcccCCCCcchHHHHHHh
Confidence 9999876666666655544
No 77
>PLN02709 nudix hydrolase
Probab=99.47 E-value=1.9e-13 Score=92.77 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=60.5
Q ss_pred CccCCcccCCC-CCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecc--ccccccc-CCcceeE
Q 033333 1 MLFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQD--QLAEWPE-KNVRSRK 76 (121)
Q Consensus 1 W~lPgG~ve~g-E~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~--~~~~~~~-~e~~~~~ 76 (121)
|.||||++|++ +++.+||+||+.||+|+....... +|.........+ ..++.|++.+.. .....++ +|..++.
T Consensus 69 iafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~v-lg~L~~~~t~sg--~~V~P~V~~~~~~~~~~~~~np~EV~~vf 145 (222)
T PLN02709 69 VALPGGKRDEEDKDDIATALREAREEIGLDPSLVTI-ISVLEPFVNKKG--MSVAPVIGFLHDKKAFKPLPNPAEVEEIF 145 (222)
T ss_pred ccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEE-eeecCCeECCCC--CEEEEEEEEecCCCCccccCChhhhheeE
Confidence 89999999996 479999999999999999876676 777654333222 345667765543 2222234 6888899
Q ss_pred EEeHHHHHHh
Q 033333 77 WMSVAEARKV 86 (121)
Q Consensus 77 W~~~~~l~~~ 86 (121)
|++++.+.+.
T Consensus 146 ~vPL~~ll~~ 155 (222)
T PLN02709 146 DVPLEMFLKD 155 (222)
T ss_pred EecHHHHhCC
Confidence 9999998753
No 78
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=1.9e-13 Score=84.92 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=48.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEeccccc--ccccCCcceeEEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLA--EWPEKNVRSRKWM 78 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~--~~~~~e~~~~~W~ 78 (121)
|.||||++++||++++||.||++||||+.+.... +..+...... .....++.|......... ..+..|..++.|+
T Consensus 31 w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~--l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~ 107 (118)
T cd04674 31 LALPGGFIELGETWQDAVARELLEETGVAVDPAD--IRLFDVRSAP-DGTLLVFGLLPERRAADLPPFEPTDETTERAVV 107 (118)
T ss_pred EECCceecCCCCCHHHHHHHHHHHHHCCcccccE--EEEEEEEecC-CCeEEEEEEEeccccccCCCCCCCcceeeEEEc
Confidence 8999999999999999999999999999976422 3333222222 222334444444333222 2234566666666
Q ss_pred eHH
Q 033333 79 SVA 81 (121)
Q Consensus 79 ~~~ 81 (121)
...
T Consensus 108 ~~~ 110 (118)
T cd04674 108 TAP 110 (118)
T ss_pred cCC
Confidence 543
No 79
>PLN03143 nudix hydrolase; Provisional
Probab=99.46 E-value=1.2e-12 Score=92.25 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=58.0
Q ss_pred CccCCcccCC-CCCHHHHHHHHHHHHhCceeee--ecceeee--------eEeeeCCCCCeeEEEEEEeEecccc-----
Q 033333 1 MLFPKGGWEI-DESIQEAALRETIEEAGVTGIV--ECELLGE--------WNFKSRAHNTDYQGYMFPLLVQDQL----- 64 (121)
Q Consensus 1 W~lPgG~ve~-gE~~~eaa~REl~EEtG~~~~~--~~~~l~~--------~~~~~~~~~~~~~~~~f~~~~~~~~----- 64 (121)
|+||+|.+|+ +|++.+||+||++||||+.+.. ... +.. -.|.+. +.....+++|++......
T Consensus 160 lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~-L~~~~~~~~g~~v~psp-G~~dE~i~Lfla~~~v~~~~l~~ 237 (291)
T PLN03143 160 LELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVD-LTAFLDPSTGCRMFPSP-GGCDEEISLFLYRGHVDKETIRQ 237 (291)
T ss_pred EEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEE-eeeccccCcCceEEecC-CccCCeEEEEEEccccchhhhcc
Confidence 6899999998 5899999999999999998542 222 221 112222 222234456664433210
Q ss_pred -----ccccc-CCcceeEEEeHHHHHHhcCchhHHHH
Q 033333 65 -----AEWPE-KNVRSRKWMSVAEARKVCQHWWMKEA 95 (121)
Q Consensus 65 -----~~~~~-~e~~~~~W~~~~~l~~~~~~~~~~~~ 95 (121)
....+ .|..++.|++++++..+..+.....+
T Consensus 238 l~~~~~~l~degE~Iev~~vpl~eiw~~~aD~ktl~a 274 (291)
T PLN03143 238 LQGKETGLRDHGELIKVHVVPYRELWRMTADAKVLMA 274 (291)
T ss_pred cccccCCCCCCCcEEEEEEEEHHHHHHHHHhHHHHHH
Confidence 11122 46677899999999988765543333
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.42 E-value=1.4e-12 Score=82.20 Aligned_cols=88 Identities=25% Similarity=0.251 Sum_probs=54.2
Q ss_pred CccCCcccCCCCCHHH-HHHHHHHHHhCceee--eecceeeeeEeeeCCCC---CeeEEEEEEeEecccc--cccc----
Q 033333 1 MLFPKGGWEIDESIQE-AALRETIEEAGVTGI--VECELLGEWNFKSRAHN---TDYQGYMFPLLVQDQL--AEWP---- 68 (121)
Q Consensus 1 W~lPgG~ve~gE~~~e-aa~REl~EEtG~~~~--~~~~~l~~~~~~~~~~~---~~~~~~~f~~~~~~~~--~~~~---- 68 (121)
|.||||++++||++.+ ||+||+.||||+.+. .... ++.+........ ......++........ ....
T Consensus 38 ~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (161)
T COG0494 38 WELPGGKVEPGEELPEEAAARELEEETGLRVKDERLEL-LGEFPPSPGDGSSVGGREHRVFFVAEVDDSLAVAIEGLSAP 116 (161)
T ss_pred eecCCcccCCCCchHHHHHHHHHHHHhCCeeeeeccee-eeeccCcccCcccccceEEEEEEeeeccccccccccccCCC
Confidence 8999999999998888 999999999999987 4444 554432222111 1111222222211111 1111
Q ss_pred cCCcceeEEEeHHHHHHhcCc
Q 033333 69 EKNVRSRKWMSVAEARKVCQH 89 (121)
Q Consensus 69 ~~e~~~~~W~~~~~l~~~~~~ 89 (121)
..+.....|++++++......
T Consensus 117 ~~e~~~~~~~~~~~~~~~~~~ 137 (161)
T COG0494 117 SEELEDLEWVPLDELAALVLA 137 (161)
T ss_pred cchhhceeeeeHHHccccccc
Confidence 135677899999999876543
No 81
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.37 E-value=4.3e-13 Score=93.15 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=59.3
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeHHH
Q 033333 3 FPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVAE 82 (121)
Q Consensus 3 lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~~ 82 (121)
+-.|.||+|||+++|..||++||+|++++.+.. ++....+.+ ..+..-|.+....+.......|..+++||+.++
T Consensus 172 ~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY-~~SQPWPfP----~SLMigf~aey~sgeI~~d~~Eleda~WFs~~e 246 (279)
T COG2816 172 LLAGFVEPGETLEQAVAREVFEEVGIKVKNVRY-VGSQPWPFP----HSLMLGFMAEYDSGEITPDEGELEDARWFSRDE 246 (279)
T ss_pred eeeecccCCccHHHHHHHHHHHhhCeEEeeeeE-EeccCCCCc----hhhhhhheeeeccccccCCcchhhhccccCHhH
Confidence 457999999999999999999999999998776 555333222 224455666666655433347888999999999
Q ss_pred HHHhcC
Q 033333 83 ARKVCQ 88 (121)
Q Consensus 83 l~~~~~ 88 (121)
+..++.
T Consensus 247 vl~~L~ 252 (279)
T COG2816 247 VLPALP 252 (279)
T ss_pred HhhhcC
Confidence 655543
No 82
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.22 E-value=2.4e-10 Score=79.07 Aligned_cols=87 Identities=17% Similarity=0.300 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhCceeee-----ecceeeeeEeeeCCC------C---CeeEEEEEEeEecccccccc-cCCcceeEEE
Q 033333 14 IQEAALRETIEEAGVTGIV-----ECELLGEWNFKSRAH------N---TDYQGYMFPLLVQDQLAEWP-EKNVRSRKWM 78 (121)
Q Consensus 14 ~~eaa~REl~EEtG~~~~~-----~~~~l~~~~~~~~~~------~---~~~~~~~f~~~~~~~~~~~~-~~e~~~~~W~ 78 (121)
..+||+||++||+||.+.. +.. ++.+.|..... + .....++|...........+ .+|..+++|+
T Consensus 117 ~~eAA~REL~EElGI~~~~~~~~~l~~-~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~~~~~l~lq~eEV~~~~wv 195 (247)
T PLN02552 117 VKNAAQRKLLHELGIPAEDVPVDQFTF-LTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPVRDVKVNPNPDEVADVKYV 195 (247)
T ss_pred HHHHHHhHHHHHhCCCcccccccccee-eeEEEEecccccccccCCCccceEEEEEEEEEecCCCcccCCHHHhheEEEE
Confidence 6789999999999999543 333 55555544322 1 12333333332222222233 3688889999
Q ss_pred eHHHHHHhcC-------chhHHHHHHHHHH
Q 033333 79 SVAEARKVCQ-------HWWMKEALDRLVM 101 (121)
Q Consensus 79 ~~~~l~~~~~-------~~~~~~~~~~~~~ 101 (121)
+++++.+++. .|+++.++..+..
T Consensus 196 s~~el~~~~~~~~~~~~tpw~~~~~~~~l~ 225 (247)
T PLN02552 196 NREELKEMMRKESGLKLSPWFRLIVDNFLM 225 (247)
T ss_pred eHHHHHHHHhhcCCcccCHHHHHHHHHHHH
Confidence 9999998853 5666666655543
No 83
>PLN02791 Nudix hydrolase homolog
Probab=99.15 E-value=4.7e-10 Score=87.77 Aligned_cols=87 Identities=18% Similarity=0.060 Sum_probs=58.0
Q ss_pred Ccc-CCcccCCCCCHHHHHHHHHHHHhCceeee--ecceeeeeEeeeC--CC--CCeeEEEEEEeEecccc---cccc-c
Q 033333 1 MLF-PKGGWEIDESIQEAALRETIEEAGVTGIV--ECELLGEWNFKSR--AH--NTDYQGYMFPLLVQDQL---AEWP-E 69 (121)
Q Consensus 1 W~l-PgG~ve~gE~~~eaa~REl~EEtG~~~~~--~~~~l~~~~~~~~--~~--~~~~~~~~f~~~~~~~~---~~~~-~ 69 (121)
|.+ ||||++.||++.+||+||++||+||.+.. ... ++.+.+... .. ..+.+.++|.+...... ...+ .
T Consensus 63 WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~-l~~~~~~~~~~~g~~~e~E~~~VYlv~~~~~~p~~~~~lq~ 141 (770)
T PLN02791 63 WDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFEL-LFVFLQECVINDGKFINNEYNDVYLVTTLDPIPLEAFTLQE 141 (770)
T ss_pred ccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheee-eeeEEEEeeccCCCcceeeEEEEEEEEECCCCCcccCCCCh
Confidence 666 79999999999999999999999998543 233 555433211 11 12344566665432211 1122 3
Q ss_pred CCcceeEEEeHHHHHHhcC
Q 033333 70 KNVRSRKWMSVAEARKVCQ 88 (121)
Q Consensus 70 ~e~~~~~W~~~~~l~~~~~ 88 (121)
+|..+++|++++++.+++.
T Consensus 142 eEV~~v~wvsl~El~~~l~ 160 (770)
T PLN02791 142 SEVSAVKYMSIEEYKSALA 160 (770)
T ss_pred hhhheeEEEcHHHHHHHHh
Confidence 6888899999999997754
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.15 E-value=4.1e-12 Score=89.08 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=53.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEec-ccccccccCCcceeEEEe
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQ-DQLAEWPEKNVRSRKWMS 79 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~-~~~~~~~~~e~~~~~W~~ 79 (121)
|..++|.+|+||+++|||+||+.||||++++.... ...-..+ ..+...++.++.+... .......+.|..+++||+
T Consensus 215 ~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~-~asQPWP--~~p~SLMIgc~ala~~~~~I~vd~dlEleDaqwF~ 291 (345)
T KOG3084|consen 215 WTCLAGFLEPGESIEEAVRRETWEETGIEVEVISY-VASQPWP--LMPQSLMIGCLALAKLNGKISVDKDLELEDAQWFD 291 (345)
T ss_pred hhhhhccCCccccHHHHHHHHHHHHhCceeeeEee-eecCCCC--CCchHHHHHHHHHHhhCCccccCcchhhhhccccc
Confidence 78899999999999999999999999999987654 3322221 1111111122222111 222222234777899999
Q ss_pred HHHHHHh
Q 033333 80 VAEARKV 86 (121)
Q Consensus 80 ~~~l~~~ 86 (121)
.+++...
T Consensus 292 r~ev~~a 298 (345)
T KOG3084|consen 292 REEVKSA 298 (345)
T ss_pred HHHHHHH
Confidence 9998764
No 85
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.07 E-value=1e-09 Score=72.55 Aligned_cols=84 Identities=18% Similarity=0.102 Sum_probs=54.0
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEE--eEecccccc---cccCCcceeE
Q 033333 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFP--LLVQDQLAE---WPEKNVRSRK 76 (121)
Q Consensus 2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~--~~~~~~~~~---~~~~e~~~~~ 76 (121)
+||.|-+|.||+++.||+|||+||||+..++......+|-.+ ...+......++. +.......+ ..+.|..++.
T Consensus 106 ElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DP-Gltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~ 184 (225)
T KOG3041|consen 106 ELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDP-GLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVF 184 (225)
T ss_pred EcccccccCCCchHHHHHHHHHHHhCccceeeeccccEEcCC-CCCCCceEEEEEEecCCCccccCccccCCCCceEEEE
Confidence 689999999999999999999999999976655434444332 2222222223333 333322211 1125777889
Q ss_pred EEeHHHHHHh
Q 033333 77 WMSVAEARKV 86 (121)
Q Consensus 77 W~~~~~l~~~ 86 (121)
-++..++.+.
T Consensus 185 ~i~~~~L~~~ 194 (225)
T KOG3041|consen 185 LIPLSELWRE 194 (225)
T ss_pred EeeHHHHHHH
Confidence 9998888765
No 86
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.99 E-value=3.3e-09 Score=65.65 Aligned_cols=96 Identities=25% Similarity=0.246 Sum_probs=61.5
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceee-eecceeeeeEeeeCCCCCeeEEEEEEeEeccc----------------
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGI-VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQ---------------- 63 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~-~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~---------------- 63 (121)
|++|+|....||++.-||+||+-||+||.++ .... +|.+. ..++. .++.|..+..-+
T Consensus 38 WSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~-lG~~k---Q~GGK--vVta~~veae~Dva~~rSntFe~eWPpr 111 (161)
T COG4119 38 WSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRID-LGSLK---QSGGK--VVTAFGVEAELDVADARSNTFELEWPPR 111 (161)
T ss_pred ccccccccCCCcCHHHHHHHHhhhhhceeecCchhh-hhhhc---cCCCc--EEEEEeeeeeeehhhhhcceeeeecCCC
Confidence 9999999999999999999999999999975 2333 55432 22222 334443332111
Q ss_pred cccccc-CCcceeEEEeHHHHHHhcCchhHHHHHHHHHHHh
Q 033333 64 LAEWPE-KNVRSRKWMSVAEARKVCQHWWMKEALDRLVMRL 103 (121)
Q Consensus 64 ~~~~~~-~e~~~~~W~~~~~l~~~~~~~~~~~~~~~~~~~~ 103 (121)
...... .|...+.||++.++...+. ...++++..+....
T Consensus 112 SG~M~~FPEVDRagWF~l~eAr~Kil-~gQRpfldrL~a~~ 151 (161)
T COG4119 112 SGKMRKFPEVDRAGWFPLAEARTKIL-KGQRPFLDRLMAHA 151 (161)
T ss_pred CCccccCcccccccceecHHHHhHHh-hccchHHHHHHHHh
Confidence 111111 2455679999999987654 33456776666553
No 87
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.91 E-value=3.3e-09 Score=71.89 Aligned_cols=84 Identities=24% Similarity=0.188 Sum_probs=53.0
Q ss_pred ccCCcccCCC-CCHHHHHHHHHHHHhCceeeeecceeeeeE-eeeCCCCCeeEEEEEEeEeccccccccc-CCcceeEEE
Q 033333 2 LFPKGGWEID-ESIQEAALRETIEEAGVTGIVECELLGEWN-FKSRAHNTDYQGYMFPLLVQDQLAEWPE-KNVRSRKWM 78 (121)
Q Consensus 2 ~lPgG~ve~g-E~~~eaa~REl~EEtG~~~~~~~~~l~~~~-~~~~~~~~~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~ 78 (121)
.||||+.|+. ++-..||.||..||.|++...... +|... +..+.+-...-...|............+ .|...+.|+
T Consensus 77 ~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~-~g~l~~~~~r~~~~v~p~v~~l~~~~~l~~~~ln~gEv~~~F~V 155 (246)
T KOG3069|consen 77 CFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDV-LGALPPFVLRSGWSVFPVVGFLSDKKILPSLRLNSGEVESAFWV 155 (246)
T ss_pred eCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhh-hhhccceeeccCcccceeEEEEecccccccccCCchheeeeeee
Confidence 5899999994 477889999999999999876665 66543 2222221212222333222111222233 677789999
Q ss_pred eHHHHHHh
Q 033333 79 SVAEARKV 86 (121)
Q Consensus 79 ~~~~l~~~ 86 (121)
|++++..-
T Consensus 156 PL~~ll~~ 163 (246)
T KOG3069|consen 156 PLTDLLLP 163 (246)
T ss_pred eHHHHhhh
Confidence 99999763
No 88
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=2.1e-09 Score=75.35 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=55.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCC-CCeeEEEEEEeEeccc--ccccccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAH-NTDYQGYMFPLLVQDQ--LAEWPEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~-~~~~~~~~f~~~~~~~--~~~~~~~e~~~~~W 77 (121)
|-+|+|.|+++|++.++|+||++||||++.....+ +..-. .+... ....-..||.+.+... .......+...++|
T Consensus 145 wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eV-la~r~-~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~W 222 (295)
T KOG0648|consen 145 WKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEV-LAFRR-AHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAW 222 (295)
T ss_pred ccccceEecccccchhhhhhhhHHHhCcchhhhhH-HHHHh-hhcchhhcccccceeEEEeeccccccchhHHHHHHHhc
Confidence 88999999999999999999999999998776654 33211 11111 1112234555554332 22223345566799
Q ss_pred EeHHHHHHhc
Q 033333 78 MSVAEARKVC 87 (121)
Q Consensus 78 ~~~~~l~~~~ 87 (121)
+++++.....
T Consensus 223 mp~~e~v~qp 232 (295)
T KOG0648|consen 223 MPIEEYVSQP 232 (295)
T ss_pred ccHHHhhccc
Confidence 9999887653
No 89
>PLN02839 nudix hydrolase
Probab=98.67 E-value=1.4e-07 Score=68.23 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=61.3
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHhCceee---eecceeeeeEeeeCCCCC--eeEEEEEEeEeccccccccc-CCcceeE
Q 033333 3 FPKGGWEIDESIQEAALRETIEEAGVTGI---VECELLGEWNFKSRAHNT--DYQGYMFPLLVQDQLAEWPE-KNVRSRK 76 (121)
Q Consensus 3 lPgG~ve~gE~~~eaa~REl~EEtG~~~~---~~~~~l~~~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~-~e~~~~~ 76 (121)
+.+|.+..||++.++++||..||+|+... .... .|.+.|....... ....++|-+.++.+..+.+. .|..+..
T Consensus 239 ~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~-~G~VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~ 317 (372)
T PLN02839 239 LVAGGLPHGISCGENLVKECEEEAGISKAIADRAIA-VGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFK 317 (372)
T ss_pred ccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceE-eEEEEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEE
Confidence 35899999999999999999999999843 2333 6777765433222 23445677777776654444 5677789
Q ss_pred EEeHHHHHHhcC
Q 033333 77 WMSVAEARKVCQ 88 (121)
Q Consensus 77 W~~~~~l~~~~~ 88 (121)
+++++++.+.+.
T Consensus 318 Lm~v~EV~~~l~ 329 (372)
T PLN02839 318 LIPVAQVANVIR 329 (372)
T ss_pred EecHHHHHHHHH
Confidence 999999987654
No 90
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.65 E-value=4.7e-07 Score=55.36 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=56.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.||+|.++.+++.+++..|++.++.++ .... ++.+.+..+ +......+|.+...... .+..+.+|+++
T Consensus 31 wefP~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~H~ft--h~~~~~~~~~~~~~~~~-----~~~~~~~W~~~ 99 (118)
T cd03431 31 WEFPSVEWEEEADGEEALLSALKKALRL---SLEP-LGTVKHTFT--HFRLTLHVYLARLEGDL-----LAPDEGRWVPL 99 (118)
T ss_pred eeCCCccccCCcCHHHHHHHHHHHHhCc---cccc-ceeEEEecC--CeEEEEEEEEEEEeCCC-----cCccccEEccH
Confidence 8999999999999999999999988765 2222 445444433 22334566666554321 23446799999
Q ss_pred HHHHHhcCchhHHHHH
Q 033333 81 AEARKVCQHWWMKEAL 96 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~~ 96 (121)
+++..+.....++.++
T Consensus 100 eel~~~~~p~~~~kil 115 (118)
T cd03431 100 EELDEYALPTVMRKIL 115 (118)
T ss_pred HHHhhCCCCHHHHHHH
Confidence 9999876555444444
No 91
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.50 E-value=6.5e-07 Score=58.41 Aligned_cols=82 Identities=16% Similarity=0.158 Sum_probs=60.3
Q ss_pred CcccCCCCCHHHHHHHHHHHHhCceee---eecceeeeeEeeeCCCCC---eeEEEEEEeEeccccccccc-CCcceeEE
Q 033333 5 KGGWEIDESIQEAALRETIEEAGVTGI---VECELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPE-KNVRSRKW 77 (121)
Q Consensus 5 gG~ve~gE~~~eaa~REl~EEtG~~~~---~~~~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~-~e~~~~~W 77 (121)
.||--+||+..+||+|-+..|.||.+. .... +..|.|....... ..+..+|.+...... .++ +|..+++|
T Consensus 68 CsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~i-l~rf~YrA~~~~~~~E~Eic~V~~~~~~~~~--~~npdEV~~~~w 144 (185)
T COG1443 68 CSHPLPGESNEDAARRRLAYELGIEPDQYDKLEI-LPRFRYRAADPDGIVENEICPVLAARLDSAL--DPNPDEVMDYRW 144 (185)
T ss_pred cCCCcCCCchHHHHHHHHHHHhCCCCcccCcccc-ccceEEeccCCCCcceeeeeeEEEEeecCCC--CCChHHhhheec
Confidence 477789999999999999999999976 2333 6667776655332 445566666655533 333 68888999
Q ss_pred EeHHHHHHhcCc
Q 033333 78 MSVAEARKVCQH 89 (121)
Q Consensus 78 ~~~~~l~~~~~~ 89 (121)
++++++.++..+
T Consensus 145 v~~e~l~~~~~~ 156 (185)
T COG1443 145 VSPEDLKEMVDA 156 (185)
T ss_pred cCHHHHHHhhcC
Confidence 999999998654
No 92
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.97 E-value=2.5e-05 Score=52.91 Aligned_cols=27 Identities=30% Similarity=0.224 Sum_probs=25.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhC
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAG 27 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG 27 (121)
|.+|||.||+||.+-.+.+||+.||+=
T Consensus 152 WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 152 WAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred ccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999964
No 93
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.70 E-value=0.00046 Score=44.81 Aligned_cols=81 Identities=23% Similarity=0.154 Sum_probs=52.6
Q ss_pred CcccCCCC--CH-HHH----HHHHHHHHhCceee---eecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcce
Q 033333 5 KGGWEIDE--SI-QEA----ALRETIEEAGVTGI---VECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRS 74 (121)
Q Consensus 5 gG~ve~gE--~~-~ea----a~REl~EEtG~~~~---~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~ 74 (121)
|||+..++ ++ .+. +.||+.||.++.-. .+.. +|-+......-+..++..+|+...........+.+..+
T Consensus 97 GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~e~-lGlINdd~neVgkVHiG~lf~~~~k~ndvevKEkd~~~ 175 (203)
T COG4112 97 GGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQELEF-LGLINDDTNEVGKVHIGALFLGRGKFNDVEVKEKDLFE 175 (203)
T ss_pred ccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhhee-eeeecCCCcccceEEEEEEEEeeccccceeeeecceee
Confidence 78888755 33 333 46999999999843 3444 55543322222335667888887665433334467778
Q ss_pred eEEEeHHHHHHh
Q 033333 75 RKWMSVAEARKV 86 (121)
Q Consensus 75 ~~W~~~~~l~~~ 86 (121)
.+|+...++...
T Consensus 176 ~kwik~~ele~~ 187 (203)
T COG4112 176 WKWIKLEELEKF 187 (203)
T ss_pred eeeeeHHHHHHH
Confidence 899999999874
No 94
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=97.51 E-value=3.9e-05 Score=54.74 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=48.8
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEe-Eeccc--ccccccCCcceeEE
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPL-LVQDQ--LAEWPEKNVRSRKW 77 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~-~~~~~--~~~~~~~e~~~~~W 77 (121)
|.||.|++..+|+-..||.||+.||||.+...... ...+....... .....|.. -+... ....-..|...+.|
T Consensus 108 w~fprgK~~kdesd~~caiReV~eetgfD~skql~---~~e~Ie~nI~d-q~~~~fIi~gvs~d~~f~~~v~~eis~ihW 183 (348)
T KOG2937|consen 108 WSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQ---DNEGIETNIRD-QLVRLFIINGVSEDTNFNPRVRKEISKIHW 183 (348)
T ss_pred ccccCccccccchhhhcchhcccchhhcCHHHHhc---cccCcccchhh-ceeeeeeeccceeeeecchhhhccccceee
Confidence 89999999999999999999999999999754221 11111111111 11222332 11111 22222357777899
Q ss_pred EeHHHH
Q 033333 78 MSVAEA 83 (121)
Q Consensus 78 ~~~~~l 83 (121)
+.++++
T Consensus 184 ~~l~~l 189 (348)
T KOG2937|consen 184 HYLDHL 189 (348)
T ss_pred eehhhh
Confidence 999998
No 95
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=97.33 E-value=0.0004 Score=42.49 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=48.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|+||.-.++. ++..+.+.+.+.+..|+.+..... ++.+.+.-+ +.+....+|.+.+...... .....+|+++
T Consensus 26 wefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~-~~~v~H~fS--H~~~~~~~~~~~~~~~~~~----~~~~~~W~~~ 97 (114)
T PF14815_consen 26 WEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEP-LGTVKHVFS--HRRWTIHVYEVEVSADPPA----EPEEGQWVSL 97 (114)
T ss_dssp EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S--SEEEEEE-S--SEEEEEEEEEEEEE-SS--------TTEEEEEG
T ss_pred cccCEeCccC-CCCHHHHHHHHHHHcCCChhhhee-cCcEEEEcc--ceEEEEEEEEEEecCCCCC----CCCCcEEEEH
Confidence 7888877663 333555666677788988877666 887766544 3444567777776664332 3456899999
Q ss_pred HHHHHhcCchhHHHH
Q 033333 81 AEARKVCQHWWMKEA 95 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~ 95 (121)
+++.++.....++.+
T Consensus 98 ~~l~~~~~p~~~~ki 112 (114)
T PF14815_consen 98 EELDQYPLPTPMRKI 112 (114)
T ss_dssp GGGGGS---HHHHHH
T ss_pred HHHhhCCCCHHHHHH
Confidence 999886655544443
No 96
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.09 E-value=0.0022 Score=45.60 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=56.1
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeHH
Q 033333 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSVA 81 (121)
Q Consensus 2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~~ 81 (121)
++-+|-|++.-++.|-|..|+.||.|..+....+ +-+++|...-+..-.-.+.|++++.+...........+-+..+++
T Consensus 82 elc~g~idke~s~~eia~eev~eecgy~v~~d~l-~hv~~~~~g~~~s~sa~~l~y~ei~es~kis~gggv~~~~~~~~~ 160 (405)
T KOG4432|consen 82 ELCAGLIDKELSPREIASEEVAEECGYRVDPDDL-IHVITFVVGAHQSGSAQHLYYAEIDESMKISEGGGVITKVYYPVN 160 (405)
T ss_pred eeeccccccccCHHHHhHHHHHHHhCCcCChhHc-eEEEEEEeccccCccchheeeeecchhhccccCCceeeEEEEeeh
Confidence 4678999999999999999999999999988777 777877766554434457788887765433333333333444433
No 97
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.92 E-value=0.007 Score=40.71 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHhCceeeeec-----ceeeeeEeeeCCCCC---eeEEEEEEeEeccccccccc-CCcceeEEEeHHH
Q 033333 12 ESIQEAALRETIEEAGVTGIVEC-----ELLGEWNFKSRAHNT---DYQGYMFPLLVQDQLAEWPE-KNVRSRKWMSVAE 82 (121)
Q Consensus 12 E~~~eaa~REl~EEtG~~~~~~~-----~~l~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~-~e~~~~~W~~~~~ 82 (121)
.....||.|-|+=|.||....+. . ++.+.|..+..+. +. +-|.+-........|+ +|..+++|++.++
T Consensus 103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~-ltrihYkA~sdg~wGEhE--iDYiL~~~~~~~~nPnpnEv~e~ryvs~ee 179 (225)
T KOG0142|consen 103 LGVRRAAQRKLKAELGIPLEEVPPEEFNF-LTRIHYKAPSDGIWGEHE--IDYILFLVKDVTLNPNPNEVSEIRYVSREE 179 (225)
T ss_pred HHHHHHHHHHHHHhhCCCccccCHHHccc-ceeeeeecCCCCCcccce--eeEEEEEeccCCCCCChhhhhHhheecHHH
Confidence 35788999999999999975443 4 7777776655432 33 2333333334444555 7888999999999
Q ss_pred HHHhcC
Q 033333 83 ARKVCQ 88 (121)
Q Consensus 83 l~~~~~ 88 (121)
+..+..
T Consensus 180 lkel~~ 185 (225)
T KOG0142|consen 180 LKELVA 185 (225)
T ss_pred HHHHHh
Confidence 999864
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.43 E-value=0.01 Score=42.28 Aligned_cols=89 Identities=20% Similarity=0.127 Sum_probs=56.8
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHhCceeeeecce-eeeeEeeeCCCCCeeEEEEEEeEecccc------cccccCCcce
Q 033333 2 LFPKGGWEIDESIQEAALRETIEEAGVTGIVECEL-LGEWNFKSRAHNTDYQGYMFPLLVQDQL------AEWPEKNVRS 74 (121)
Q Consensus 2 ~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~-l~~~~~~~~~~~~~~~~~~f~~~~~~~~------~~~~~~e~~~ 74 (121)
+|-.|.|+..-+..+-|.||.-||.|.++....+. ... |.+.-+..-..-.+|+.++.+.. ....++|..+
T Consensus 287 ELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~--y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IE 364 (405)
T KOG4432|consen 287 ELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAK--YISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIE 364 (405)
T ss_pred eeecccCCCCcccHHHHHHHHHHHhCCCCCHHHHhhhhe--eecccCCcCCeeEEEEEEeehhhccCCCCCcccccceee
Confidence 35678999888999999999999999997554431 222 33332211112245555554432 1122357778
Q ss_pred eEEEeHHHHHHhcCchhH
Q 033333 75 RKWMSVAEARKVCQHWWM 92 (121)
Q Consensus 75 ~~W~~~~~l~~~~~~~~~ 92 (121)
..=+++++++.++..+.+
T Consensus 365 vv~lsle~a~~~~~q~~I 382 (405)
T KOG4432|consen 365 VVRLSLEDAPSLYRQHNI 382 (405)
T ss_pred EEEechhhhhHHHhccCC
Confidence 899999999998765533
No 99
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=95.20 E-value=0.063 Score=37.42 Aligned_cols=83 Identities=18% Similarity=0.236 Sum_probs=55.1
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhCceeee-ec-ceeeeeEeee---CCCCCeeEEEEEEeEecccccccccC-CcceeEE
Q 033333 4 PKGGWEIDESIQEAALRETIEEAGVTGIV-EC-ELLGEWNFKS---RAHNTDYQGYMFPLLVQDQLAEWPEK-NVRSRKW 77 (121)
Q Consensus 4 PgG~ve~gE~~~eaa~REl~EEtG~~~~~-~~-~~l~~~~~~~---~~~~~~~~~~~f~~~~~~~~~~~~~~-e~~~~~W 77 (121)
-+|.+--|-.+.++|++|..||+.+.... .. ...|+++|.+ +.+-....-++|-+.++.+..+.+++ |......
T Consensus 170 vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~~d~iP~~nDGEV~~F~L 249 (306)
T KOG4313|consen 170 VAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFDLELPLDFIPQNNDGEVQAFEL 249 (306)
T ss_pred hccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEeccCchhhcCCCCCCceeeEee
Confidence 47888889999999999999999998622 11 1256666553 21111233477778877776666654 4455678
Q ss_pred EeHHHHHHh
Q 033333 78 MSVAEARKV 86 (121)
Q Consensus 78 ~~~~~l~~~ 86 (121)
+++.+..+.
T Consensus 250 ltl~~~v~~ 258 (306)
T KOG4313|consen 250 LTLKDCVER 258 (306)
T ss_pred ecHHHHHHH
Confidence 887776553
No 100
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=94.78 E-value=0.15 Score=34.11 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=45.6
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCcee------eeecceeeeeEeee----------CC-CCCeeEEEEEEeEeccc
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTG------IVECELLGEWNFKS----------RA-HNTDYQGYMFPLLVQDQ 63 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~------~~~~~~l~~~~~~~----------~~-~~~~~~~~~f~~~~~~~ 63 (121)
+.||||.+.+||+..++..|.+.+-.|... .+... +|.|-.+. .+ ........+|.+.+...
T Consensus 70 fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge~-l~~WwRp~Fe~~~YPYlP~HitkPKE~~klylV~Lpe~ 148 (188)
T PF13869_consen 70 FKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGEC-LGTWWRPNFEPFMYPYLPPHITKPKECIKLYLVQLPEK 148 (188)
T ss_dssp EE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEEE-EEEEEESSSSS--BSS--TT-SS-SEEEEEEEEE--SS
T ss_pred ccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecCE-EEEEeCCCCCCCCCCCCCcccCChhheeEEEEEecCCC
Confidence 458999999999999999999999988752 33334 66653211 11 11234567788777664
Q ss_pred ccccccCCcceeEEEeHHHHHH
Q 033333 64 LAEWPEKNVRSRKWMSVAEARK 85 (121)
Q Consensus 64 ~~~~~~~e~~~~~W~~~~~l~~ 85 (121)
...... ....+.-+++=|+-+
T Consensus 149 ~~F~VP-kn~kL~AvPLFeLyd 169 (188)
T PF13869_consen 149 CLFAVP-KNMKLVAVPLFELYD 169 (188)
T ss_dssp EEEEEE-TTSEEEEEEHHHHTT
T ss_pred ceEecC-CCCeEEeecHhhhhc
Confidence 332211 345677778666643
No 101
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=94.54 E-value=0.16 Score=35.40 Aligned_cols=87 Identities=14% Similarity=0.206 Sum_probs=54.3
Q ss_pred CccCCccc-CCCCCHHHHHHHHHHHHhCceeee---ecceeeeeEeeeCCCCC-----eeEEEEEEeEecccccccccCC
Q 033333 1 MLFPKGGW-EIDESIQEAALRETIEEAGVTGIV---ECELLGEWNFKSRAHNT-----DYQGYMFPLLVQDQLAEWPEKN 71 (121)
Q Consensus 1 W~lPgG~v-e~gE~~~eaa~REl~EEtG~~~~~---~~~~l~~~~~~~~~~~~-----~~~~~~f~~~~~~~~~~~~~~e 71 (121)
|.||.+.+ ++++++..+|.|.|+.-.|=.... ....+|.+.+.++.... ...+.+|.+........ .++.
T Consensus 154 w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k~~lv~~~~~-kn~n 232 (263)
T KOG4548|consen 154 WIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFKASLVANSNQ-KNQN 232 (263)
T ss_pred eeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEeeeeeccccch-hccc
Confidence 89999999 899999999999999998866432 12224533332222211 13345555554443211 1222
Q ss_pred cceeEEEeHHHHHHhcC
Q 033333 72 VRSRKWMSVAEARKVCQ 88 (121)
Q Consensus 72 ~~~~~W~~~~~l~~~~~ 88 (121)
-.+..|++-+++.+.+.
T Consensus 233 ~edfvWvTkdel~e~l~ 249 (263)
T KOG4548|consen 233 KEDFVWVTKDELGEKLP 249 (263)
T ss_pred ccceEEechHHHhhhcc
Confidence 33489999999988765
No 102
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=91.15 E-value=0.26 Score=32.51 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=24.8
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHhC
Q 033333 2 LFPKGGWEIDESIQEAALRETIEEAG 27 (121)
Q Consensus 2 ~lPgG~ve~gE~~~eaa~REl~EEtG 27 (121)
.+|||.+.+||+-.+...|-+.|-.|
T Consensus 97 KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 97 KLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred ecCCCccCCCcchhHHHHHHHHHHhc
Confidence 48999999999999999999999999
No 103
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=85.66 E-value=0.92 Score=22.45 Aligned_cols=22 Identities=32% Similarity=0.206 Sum_probs=11.9
Q ss_pred CcccCCCCCHHHHHHHHHHHHh
Q 033333 5 KGGWEIDESIQEAALRETIEEA 26 (121)
Q Consensus 5 gG~ve~gE~~~eaa~REl~EEt 26 (121)
||-..+|--+.-++.||+-||.
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 6777788888899999999995
No 104
>PRK10880 adenine DNA glycosylase; Provisional
Probab=83.54 E-value=6.3 Score=29.13 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=39.4
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeecceeeeeEeeeCCCCCeeEEEEEEeEecccccccccCCcceeEEEeH
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVECELLGEWNFKSRAHNTDYQGYMFPLLVQDQLAEWPEKNVRSRKWMSV 80 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~e~~~~~W~~~ 80 (121)
|.||+. +. .+ ..++..|+.|+....... ++.+.|..++ ..-...+|.+........ .. .....|+++
T Consensus 259 ~~fP~~--~~----~~-~~~~~~~~~~~~~~~~~~-~~~~~H~fTH--~~~~~~~~~~~~~~~~~~-~~--~~~~~w~~~ 325 (350)
T PRK10880 259 FCFPQF--AD----EE-ELRQWLAQRGIAADNLTQ-LTAFRHTFSH--FHLDIVPMWLPVSSFTGC-MD--EGNGLWYNL 325 (350)
T ss_pred ccCCCC--cc----hh-hHHHHHHhcCCchhhhcc-cCceEEEEee--EEEEEEEEEEEccccccc-cC--CcCCeEech
Confidence 788863 21 11 245566777875322222 4444443331 112223444433221110 11 123469999
Q ss_pred HHHHHhcCchhHHHHH
Q 033333 81 AEARKVCQHWWMKEAL 96 (121)
Q Consensus 81 ~~l~~~~~~~~~~~~~ 96 (121)
+++..+.....++.++
T Consensus 326 ~~~~~~~~p~~~~k~l 341 (350)
T PRK10880 326 AQPPSVGLAAPVERLL 341 (350)
T ss_pred HHhcccCCcHHHHHHH
Confidence 9999876655444444
No 105
>PF14443 DBC1: DBC1
Probab=81.55 E-value=8.6 Score=24.16 Aligned_cols=23 Identities=13% Similarity=0.059 Sum_probs=19.3
Q ss_pred CCHHHHHHHHHHHHhCceeeeec
Q 033333 12 ESIQEAALRETIEEAGVTGIVEC 34 (121)
Q Consensus 12 E~~~eaa~REl~EEtG~~~~~~~ 34 (121)
.++..||+|=+++-|||+.....
T Consensus 40 ~~LI~TAiR~~K~~tgiDLS~Ct 62 (126)
T PF14443_consen 40 SVLIRTAIRTCKALTGIDLSNCT 62 (126)
T ss_pred HHHHHHHHHHHHHHhccchhhcC
Confidence 36788999999999999976544
No 106
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=78.16 E-value=1.7 Score=23.43 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=10.0
Q ss_pred CccCCcccCCCC
Q 033333 1 MLFPKGGWEIDE 12 (121)
Q Consensus 1 W~lPgG~ve~gE 12 (121)
|.+|||.+-.+-
T Consensus 24 Wl~Pgg~vi~NP 35 (60)
T PF07026_consen 24 WLMPGGKVITNP 35 (60)
T ss_pred eecCCCeeEcCH
Confidence 889999988764
No 107
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=61.74 E-value=5.8 Score=28.58 Aligned_cols=33 Identities=18% Similarity=-0.052 Sum_probs=28.2
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeeeec
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIVEC 34 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~~~ 34 (121)
|.+ .|+..-++++.+++.|++.+++|......+
T Consensus 57 W~~-~Gr~~iwl~l~~~~~~lV~~a~~~gf~~hH 89 (295)
T KOG0648|consen 57 WYL-QGRKGIWLKLPEELARLVEEAAKYGFDYHH 89 (295)
T ss_pred HHH-ccCcccceechHHHHhHHHHHHhcCcEEec
Confidence 566 899999999999999999999998865433
No 108
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=60.83 E-value=2.4 Score=30.94 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=29.3
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCceeee
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTGIV 32 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~~~ 32 (121)
|.||.|++..||-+..+++|+-.||+|.+...
T Consensus 266 ~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s 297 (348)
T KOG2937|consen 266 WTFPKGKISRGEKPRDASIRSTFEEPGFPFGS 297 (348)
T ss_pred ccCcccccccCCccccchhhhcCCCcCCcccc
Confidence 78999999999999999999999999988543
No 109
>PF13014 KH_3: KH domain
Probab=55.68 E-value=13 Score=18.23 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.2
Q ss_pred HHHHHHHHhCceeeeec
Q 033333 18 ALRETIEEAGVTGIVEC 34 (121)
Q Consensus 18 a~REl~EEtG~~~~~~~ 34 (121)
-+|++.++||+.+.+..
T Consensus 12 ~I~~I~~~tg~~I~i~~ 28 (43)
T PF13014_consen 12 TIKEIREETGAKIQIPP 28 (43)
T ss_pred HHHHHHHHhCcEEEECC
Confidence 37999999999987755
No 110
>PF09505 Dimeth_Pyl: Dimethylamine methyltransferase (Dimeth_PyL); InterPro: IPR012653 This family consists of dimethylamine methyltransferases from the genus Methanosarcina. It is found in three nearly identical copies in each of Methanosarcina acetivorans, Methanosarcina barkeri, and Methanosarcina mazei. It is one of a suite of three non-homologous enzymes with a critical UAG-encoded pyrrolysine residue in these species (along with trimethylamine methyltransferase and monomethylamine methyltransferase). It demethylates dimethylamine, leaving monomethylamine, and methylates the prosthetic group of the small corrinoid protein MtbC. The methyl group is then transferred by methylcorrinoid:coenzyme M methyltransferase to coenzyme M. Note that the pyrrolysine residue is variously translated as K or X, or as a stop codon that truncates the sequence.; GO: 0008168 methyltransferase activity, 0015948 methanogenesis
Probab=52.96 E-value=9.4 Score=28.14 Aligned_cols=23 Identities=26% Similarity=0.134 Sum_probs=19.2
Q ss_pred cCCCCCHHHHHHHHHHHHhCcee
Q 033333 8 WEIDESIQEAALRETIEEAGVTG 30 (121)
Q Consensus 8 ve~gE~~~eaa~REl~EEtG~~~ 30 (121)
|+..+-..+.+.||++||.+|-+
T Consensus 409 V~~~dLsDe~~MrelReeL~IG~ 431 (466)
T PF09505_consen 409 VEPMDLSDEYVMRELREELNIGV 431 (466)
T ss_pred CChhhcccHHHHHHHHHhcCcce
Confidence 56677778899999999999875
No 111
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=51.29 E-value=14 Score=20.61 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=18.0
Q ss_pred cCCcccCCCCCHHHHHHH--HHHHHhCce
Q 033333 3 FPKGGWEIDESIQEAALR--ETIEEAGVT 29 (121)
Q Consensus 3 lPgG~ve~gE~~~eaa~R--El~EEtG~~ 29 (121)
+|...|..||+++.|..| -.-+++|+.
T Consensus 1 M~~v~V~ene~~d~ALrrFKr~~~k~gil 29 (67)
T COG0828 1 MPQVKVRENEPLDKALRRFKRKVEKEGIL 29 (67)
T ss_pred CCeeeecCCChHHHHHHHHHHHHHHHHHH
Confidence 578889999988888753 122445544
No 112
>PF14044 NETI: NETI protein
Probab=49.96 E-value=18 Score=19.41 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=16.9
Q ss_pred ccCCCCCHHHHHHHHHHHHhCceeee
Q 033333 7 GWEIDESIQEAALRETIEEAGVTGIV 32 (121)
Q Consensus 7 ~ve~gE~~~eaa~REl~EEtG~~~~~ 32 (121)
.|+.+||+.+|+.| +++|--..+..
T Consensus 3 eV~enETI~~CL~R-M~~eGY~PvrR 27 (57)
T PF14044_consen 3 EVEENETISDCLAR-MKKEGYMPVRR 27 (57)
T ss_pred eccCCCcHHHHHHH-HHHcCCCceee
Confidence 37789999999999 44443333443
No 113
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=46.74 E-value=17 Score=24.17 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCceeeeecceeeee
Q 033333 17 AALRETIEEAGVTGIVECELLGEW 40 (121)
Q Consensus 17 aa~REl~EEtG~~~~~~~~~l~~~ 40 (121)
-|+.|++||+|+.+-.+.. .|..
T Consensus 158 eaVk~lr~~hgI~VISL~M-~GSV 180 (218)
T COG1707 158 EAVKELREEHGIPVISLNM-FGSV 180 (218)
T ss_pred HHHHHHHHhcCCeEEEecc-CCCC
Confidence 4678999999999887765 5544
No 114
>PRK07198 hypothetical protein; Validated
Probab=45.71 E-value=13 Score=28.04 Aligned_cols=29 Identities=14% Similarity=0.057 Sum_probs=19.9
Q ss_pred CccCCcccCCCCCHHHHHHHHHHHHhCcee
Q 033333 1 MLFPKGGWEIDESIQEAALRETIEEAGVTG 30 (121)
Q Consensus 1 W~lPgG~ve~gE~~~eaa~REl~EEtG~~~ 30 (121)
|.|||=.-..| -.+.+.+|-|+|+||-..
T Consensus 175 wylpgva~rfg-~~e~~lrr~lfe~t~g~~ 203 (418)
T PRK07198 175 WYLPGVAERFG-VSETDLRRTLFEQTGGMF 203 (418)
T ss_pred ccccchHHHcC-CCHHHHHHHHHHHcCCCC
Confidence 78887332222 346778999999999664
No 115
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to those in other RNA binding proteins: a KH domain and an S1 domain. KH domains bind single-stranded RNA and are found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=43.69 E-value=25 Score=18.77 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=13.6
Q ss_pred HHHHHHHHhCceeeeec
Q 033333 18 ALRETIEEAGVTGIVEC 34 (121)
Q Consensus 18 a~REl~EEtG~~~~~~~ 34 (121)
-+|+++|+||+.+.+..
T Consensus 23 ~ik~I~~~tg~~I~i~~ 39 (61)
T cd02393 23 TIKKIIEETGVKIDIED 39 (61)
T ss_pred HHHHHHHHHCCEEEeCC
Confidence 46899999999986543
No 116
>COG4353 Uncharacterized conserved protein [Function unknown]
Probab=42.03 E-value=28 Score=23.01 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=10.8
Q ss_pred CccCCcccCCCCCH
Q 033333 1 MLFPKGGWEIDESI 14 (121)
Q Consensus 1 W~lPgG~ve~gE~~ 14 (121)
|.+|-|.++.|+.+
T Consensus 129 WY~PEG~mEGg~Kl 142 (192)
T COG4353 129 WYFPEGGMEGGPKL 142 (192)
T ss_pred eeccCccccccccc
Confidence 88999988877543
No 117
>PF03068 PAD: Protein-arginine deiminase (PAD); InterPro: IPR013530 In the presence of calcium ions, Protein-arginine deiminase (PAD) enzymes 3.5.3.15 from EC catalyse the post-translational modification reaction responsible for the formation of citrulline residues from protein-bound arginine residues []. Four PAD isotypes of PAD have been identified in mammals, a fifth may also exist. Non-mammalian vertebrates appear to have only a single PAD enzyme. All known natural substrates of PAD are proteins known to have an important structural function, such as keratin (PAD1), intermediate filaments or proteins associated with intermediate filaments. Citrulination may have consequences for the structural integrity and interactions of these proteins. Physiological levels of calcium appear to be too low to activate these enzymes suggesting a role between PAD activation and loss of calcium homeostasis during terminal differentiation and cell death (apoptosis). ; GO: 0004668 protein-arginine deiminase activity, 0005509 calcium ion binding, 0005737 cytoplasm; PDB: 3B1U_A 3B1T_A 2DW5_A 3APN_A 1WD9_A 2DEX_X 1WD8_A 2DEY_X 2DEW_X 1WDA_A ....
Probab=30.40 E-value=42 Score=25.31 Aligned_cols=32 Identities=28% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCcccCCCCCHHHHHHHHHHHHhCceeeeecc
Q 033333 4 PKGGWEIDESIQEAALRETIEEAGVTGIVECE 35 (121)
Q Consensus 4 PgG~ve~gE~~~eaa~REl~EEtG~~~~~~~~ 35 (121)
|-|-+-.|....+.++|++.|-+|+.+.....
T Consensus 323 P~GP~i~G~d~~e~~v~~~~~~~G~~v~fiDD 354 (385)
T PF03068_consen 323 PFGPVIDGRDCLEEAVRELLEPAGLNVTFIDD 354 (385)
T ss_dssp ----EETTEEHHHHHHHHHHGGGT-EEEEE--
T ss_pred CcCCccCCEehHHHHHHHHHhhcCCEEEEEeC
Confidence 56777889999999999999999999988664
No 118
>PF10921 DUF2710: Protein of unknown function (DUF2710); InterPro: IPR024296 This family of uncharacterised proteins appears to be restricted to Mycobacteriaceae.
Probab=30.28 E-value=63 Score=19.34 Aligned_cols=24 Identities=38% Similarity=0.433 Sum_probs=18.2
Q ss_pred CCcccCC----CCCHHHHHHHHHHHHhC
Q 033333 4 PKGGWEI----DESIQEAALRETIEEAG 27 (121)
Q Consensus 4 PgG~ve~----gE~~~eaa~REl~EEtG 27 (121)
||++.+| +.++.+..+||+.|-..
T Consensus 5 ~~~r~~~~~lsDkdLvesVlr~lseaa~ 32 (109)
T PF10921_consen 5 PGSRAEPSQLSDKDLVESVLRELSEAAD 32 (109)
T ss_pred CCCCccccccchhhHHHHHHHHHHHHHH
Confidence 7777764 45889999999987643
No 119
>smart00250 PLEC Plectin repeat.
Probab=29.06 E-value=23 Score=16.92 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=12.3
Q ss_pred CcccCC--CC--CHHHHHHHHH
Q 033333 5 KGGWEI--DE--SIQEAALRET 22 (121)
Q Consensus 5 gG~ve~--gE--~~~eaa~REl 22 (121)
||-+++ |+ +..+|..|.+
T Consensus 11 ~Giidp~t~~~lsv~eA~~~gl 32 (38)
T smart00250 11 GGIIDPETGQKLSVEEALRRGL 32 (38)
T ss_pred eEEEcCCCCCCcCHHHHHHcCC
Confidence 566675 44 7788887765
No 120
>PF00013 KH_1: KH domain syndrome, contains KH motifs.; InterPro: IPR018111 The K homology (KH) domain was first identified in the human heterogeneous nuclear ribonucleoprotein (hnRNP) K. It is a domain of around 70 amino acids that is present in a wide variety of quite diverse nucleic acid-binding proteins []. It has been shown to bind RNA [, ]. Like many other RNA-binding motifs, KH motifs are found in one or multiple copies (14 copies in chicken vigilin) and, at least for hnRNP K (three copies) and FMR-1 (two copies), each motif is necessary for in vitro RNA binding activity, suggesting that they may function cooperatively or, in the case of single KH motif proteins (for example, Mer1p), independently []. According to structural [, , ] analysis the KH domain can be separated in two groups. The first group or type-1 contain a beta-alpha-alpha-beta-beta-alpha structure, whereas in the type-2 the two last beta-sheet are located in the N-terminal part of the domain (alpha-beta-beta-alpha-alpha-beta). Sequence similarity between these two folds are limited to a short region (VIGXXGXXI) in the RNA binding motif. This motif is located between helice 1 and 2 in type-1 and between helice 2 and 3 in type-2. Proteins known to contain a type-1 KH domain include bacterial polyribonucleotide nucleotidyltransferases (2.7.7.8 from EC); vertebrate fragile X mental retardation protein 1 (FMR1); eukaryotic heterogeneous nuclear ribonucleoprotein K (hnRNP K), one of at least 20 major proteins that are part of hnRNP particles in mammalian cells; mammalian poly(rC) binding proteins; Artemia salina glycine-rich protein GRP33; yeast PAB1-binding protein 2 (PBP2); vertebrate vigilin; and human high-density lipoprotein binding protein (HDL-binding protein). More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding; PDB: 1TUA_A 2Z0S_A 1WE8_A 4AM3_B 4AIM_A 4AID_A 2HH3_A 2JVZ_A 1J4W_A 2HH2_A ....
Probab=27.62 E-value=64 Score=16.68 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.3
Q ss_pred HHHHHHHHhCceeeee
Q 033333 18 ALRETIEEAGVTGIVE 33 (121)
Q Consensus 18 a~REl~EEtG~~~~~~ 33 (121)
-+|++.++||+.+.+.
T Consensus 21 ~i~~I~~~t~~~I~i~ 36 (60)
T PF00013_consen 21 NIKEIEEETGVKIQIP 36 (60)
T ss_dssp HHHHHHHHHTSEEEEE
T ss_pred cHHHhhhhcCeEEEEc
Confidence 4789999999997764
No 121
>PF08398 Parvo_coat_N: Parvovirus coat protein VP1; InterPro: IPR013607 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This is the N-terminal region of the Parvovirus VP1 coat protein []; its function is not known. ; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=26.19 E-value=88 Score=17.24 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=13.0
Q ss_pred CCcccCCCC--CHHHHHHHHH
Q 033333 4 PKGGWEIDE--SIQEAALRET 22 (121)
Q Consensus 4 PgG~ve~gE--~~~eaa~REl 22 (121)
||..++.|+ +..++|.|+=
T Consensus 9 Pgn~l~~g~Pv~~~D~aA~~H 29 (64)
T PF08398_consen 9 PGNPLDNGEPVNPVDAAAREH 29 (64)
T ss_pred CCCCcCCCCCCCHHHHHHHHH
Confidence 677777777 5667776653
No 122
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH). Splicing factor 1 (SF1) specifically recognizes the intron branch point sequence (BPS) UACUAAC in the pre-mRNA transcripts during spliceosome assembly. We show that the KH-QUA2 region of SF1 defines an enlarged KH (hnRNP K) fold which is necessary and sufficient for BPS binding. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=25.98 E-value=62 Score=20.06 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=13.7
Q ss_pred HHHHHHHHhCceeeeec
Q 033333 18 ALRETIEEAGVTGIVEC 34 (121)
Q Consensus 18 a~REl~EEtG~~~~~~~ 34 (121)
-+|.+.+|||+.+.+..
T Consensus 27 tiK~i~~eTg~kI~Irg 43 (120)
T cd02395 27 TLKQLEKETGAKISIRG 43 (120)
T ss_pred HHHHHHHHHCCEEEEec
Confidence 46899999999987643
No 123
>COG4274 Uncharacterized conserved protein [Function unknown]
Probab=25.28 E-value=1.4e+02 Score=18.06 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=20.6
Q ss_pred CCH-HHHHHHHHHHHhCceeeeecceeeeeE
Q 033333 12 ESI-QEAALRETIEEAGVTGIVECELLGEWN 41 (121)
Q Consensus 12 E~~-~eaa~REl~EEtG~~~~~~~~~l~~~~ 41 (121)
|++ ..+|.|-+.|.-|+++......+|.|+
T Consensus 27 e~p~R~~av~~~les~G~k~~~~y~T~GeYD 57 (104)
T COG4274 27 ETPKRAAAVRALLESMGGKVKEQYWTLGEYD 57 (104)
T ss_pred hCHHHHHHHHHHHHHcCcEEEEEEEeecccc
Confidence 344 456688899999999876554366554
No 124
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=24.93 E-value=1.1e+02 Score=17.83 Aligned_cols=27 Identities=30% Similarity=0.153 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHhCceeeeecceeee
Q 033333 13 SIQEAALRETIEEAGVTGIVECELLGE 39 (121)
Q Consensus 13 ~~~eaa~REl~EEtG~~~~~~~~~l~~ 39 (121)
+-...+.|++.|..|.++......+|.
T Consensus 19 ~~R~~a~~~~~e~~Gg~l~~~y~t~G~ 45 (91)
T PF08734_consen 19 PDRAEAVRALIEALGGKLKSFYWTLGE 45 (91)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEEecCC
Confidence 445667788999999998754432443
No 125
>PRK00270 rpsU 30S ribosomal protein S21; Reviewed
Probab=23.33 E-value=73 Score=17.43 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=15.1
Q ss_pred CCcccCCCCCHHHHHHH--HHHHHhCce
Q 033333 4 PKGGWEIDESIQEAALR--ETIEEAGVT 29 (121)
Q Consensus 4 PgG~ve~gE~~~eaa~R--El~EEtG~~ 29 (121)
|.=.|..||+++.|..| -.-+.+|+.
T Consensus 2 ~~V~V~~~e~ie~Alrrfkr~~~k~gil 29 (64)
T PRK00270 2 PQVKVRENESIDKALRRFKRKVEKAGIL 29 (64)
T ss_pred CeeEeCCCChHHHHHHHHHHHHHHcchH
Confidence 44557778877777742 233445543
No 126
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like. The vigilin family is a large and extended family of multiple KH-domain proteins, including vigilin, also called high density lipoprotein binding protien (HBP), fungal Scp160 and bicaudal-C. Yeast Scp160p has been shown to bind RNA and to associate with both soluble and membrane-bound polyribosomes as a mRNP component. Bicaudal-C is a RNA-binding molecule believed to function in embryonic development at the post-transcriptional level. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=22.91 E-value=74 Score=16.56 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=13.4
Q ss_pred HHHHHHHHhCceeeeec
Q 033333 18 ALRETIEEAGVTGIVEC 34 (121)
Q Consensus 18 a~REl~EEtG~~~~~~~ 34 (121)
-++++.++||+.+.+..
T Consensus 21 ~i~~i~~~~g~~I~i~~ 37 (62)
T cd02394 21 NIRKIMEETGVKIRFPD 37 (62)
T ss_pred cHHHHHHHhCCEEEcCC
Confidence 36889999999987644
No 127
>KOG3904 consensus Predicted hydrolase RP2 (NUDIX/MutT superfamily) [Function unknown]
Probab=22.15 E-value=40 Score=23.05 Aligned_cols=19 Identities=37% Similarity=0.506 Sum_probs=15.9
Q ss_pred CCHHHHHHHHHHHHhCcee
Q 033333 12 ESIQEAALRETIEEAGVTG 30 (121)
Q Consensus 12 E~~~eaa~REl~EEtG~~~ 30 (121)
-....+|+||..||.|+-.
T Consensus 23 i~lrltAire~feE~gill 41 (209)
T KOG3904|consen 23 IALRLTAIRETFEEVGILL 41 (209)
T ss_pred eeeccHHHHHHHhhhheeE
Confidence 3567899999999999874
No 128
>PF09999 DUF2240: Uncharacterized protein conserved in archaea (DUF2240); InterPro: IPR018716 This family of various hypothetical archaeal proteins has no known function.
Probab=22.01 E-value=40 Score=21.72 Aligned_cols=14 Identities=43% Similarity=0.885 Sum_probs=11.5
Q ss_pred eeEEEeHHHHHHhc
Q 033333 74 SRKWMSVAEARKVC 87 (121)
Q Consensus 74 ~~~W~~~~~l~~~~ 87 (121)
+.+||+++++.+++
T Consensus 30 D~~WmspdqAk~li 43 (144)
T PF09999_consen 30 DRKWMSPDQAKRLI 43 (144)
T ss_pred ecCCCCHHHHHHHH
Confidence 57999999998764
No 129
>PF10820 DUF2543: Protein of unknown function (DUF2543); InterPro: IPR020251 This entry contains proteins with no known function.
Probab=21.31 E-value=82 Score=17.74 Aligned_cols=24 Identities=33% Similarity=0.345 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHHHHhCceeee
Q 033333 9 EIDESIQEAALRETIEEAGVTGIV 32 (121)
Q Consensus 9 e~gE~~~eaa~REl~EEtG~~~~~ 32 (121)
-.+|.+.+-|.+|+..|+|++...
T Consensus 44 mnneeIsEeaQ~EMA~eAgi~~~r 67 (81)
T PF10820_consen 44 MNNEEISEEAQQEMASEAGIDEQR 67 (81)
T ss_pred hccHhhhHHHHHHHHHHcCCcHHH
Confidence 346778888999999999998644
No 130
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=20.63 E-value=2.1e+02 Score=17.35 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=20.3
Q ss_pred ccCCCCCHHHHHHHHHHHHhCceeeeecceeee
Q 033333 7 GWEIDESIQEAALRETIEEAGVTGIVECELLGE 39 (121)
Q Consensus 7 ~ve~gE~~~eaa~REl~EEtG~~~~~~~~~l~~ 39 (121)
++++||++.++...=++ +-++......- +|.
T Consensus 7 rl~~Gedl~~~l~~~~~-~~~i~~~~is~-iGs 37 (120)
T PF03479_consen 7 RLDPGEDLLESLEAFAR-EHGIRSGVISG-IGS 37 (120)
T ss_dssp EEETTSBHHHHHHHHHH-HHT-SSEEEEE-EEE
T ss_pred EECCCCHHHHHHHHHHH-HCCCcEEEEEE-EeE
Confidence 57899999998876444 44777555443 554
Done!