Query 033334
Match_columns 121
No_of_seqs 124 out of 885
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:06:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3djh_A Macrophage migration in 100.0 5.5E-43 1.9E-47 225.3 12.8 114 2-116 1-114 (114)
2 3kan_A D-dopachrome tautomeras 100.0 2.9E-43 9.8E-48 227.6 11.5 116 2-118 1-117 (117)
3 4dh4_A MIF; trimer, isomerase; 100.0 7.7E-43 2.6E-47 224.5 11.6 114 2-115 1-114 (114)
4 3t5s_A Gilaa.00834.A, macropha 100.0 1.1E-42 3.9E-47 229.7 9.4 114 1-115 22-135 (135)
5 3fwu_A Macrophage migration in 100.0 3.8E-42 1.3E-46 226.7 11.4 113 1-115 21-133 (133)
6 3fwt_A Macrophage migration in 100.0 7.3E-42 2.5E-46 225.4 12.2 113 1-115 21-133 (133)
7 1uiz_A MIF, macrophage migrati 100.0 1.7E-39 5.9E-44 209.0 13.0 115 1-116 1-115 (115)
8 2xcz_A Possible ATLS1-like lig 100.0 3.2E-39 1.1E-43 207.7 13.1 115 1-116 1-115 (115)
9 2wkb_A Macrophage migration in 100.0 8.2E-40 2.8E-44 213.5 9.9 120 2-121 1-120 (125)
10 2os5_A Acemif; macrophage migr 100.0 2.3E-39 7.9E-44 209.6 11.3 117 1-118 1-117 (119)
11 1hfo_A Migration inhibitory fa 100.0 2.1E-38 7.2E-43 203.2 12.8 113 2-115 1-113 (113)
12 3b64_A Macrophage migration in 100.0 1.7E-37 5.9E-42 198.8 11.8 111 2-115 1-112 (112)
13 2aal_A Malonate semialdehyde d 100.0 4.4E-33 1.5E-37 182.7 13.3 117 1-118 1-125 (131)
14 1mww_A Hypothetical protein HI 100.0 5E-31 1.7E-35 172.3 9.6 116 4-119 2-120 (128)
15 3n4h_A Putative tautomerase; C 99.9 6.6E-26 2.3E-30 151.3 10.0 116 3-118 2-122 (148)
16 3mlc_A FG41 malonate semialdeh 99.9 1.8E-24 6.3E-29 142.6 12.7 116 2-118 1-124 (136)
17 3c6v_A Probable tautomerase/de 99.9 8.9E-22 3E-26 133.0 11.8 115 1-116 22-142 (161)
18 3mf7_A CIS-3-chloroacrylic aci 99.8 8.2E-19 2.8E-23 117.1 11.2 115 3-117 2-121 (149)
19 2opa_A Probable tautomerase YW 99.7 9.8E-18 3.3E-22 95.6 6.2 59 60-118 2-60 (61)
20 1otf_A 4-oxalocrotonate tautom 99.7 1.3E-17 4.3E-22 95.4 6.1 60 60-119 2-61 (62)
21 1u9d_A Hypothetical protein VC 99.7 8.7E-17 3E-21 103.5 10.2 107 1-115 16-122 (122)
22 3abf_A 4-oxalocrotonate tautom 99.7 3.7E-17 1.3E-21 94.0 6.1 62 59-120 2-63 (64)
23 3m21_A Probable tautomerase HP 99.7 6.3E-17 2.1E-21 94.2 6.7 61 60-120 2-65 (67)
24 3m20_A 4-oxalocrotonate tautom 99.7 1.8E-16 6.3E-21 91.0 6.2 59 60-119 2-60 (62)
25 3mb2_A 4-oxalocrotonate tautom 99.7 2.3E-16 7.8E-21 93.1 6.5 61 60-120 3-63 (72)
26 3ry0_A Putative tautomerase; o 99.6 3.3E-16 1.1E-20 90.6 5.6 61 60-120 2-62 (65)
27 2x4k_A 4-oxalocrotonate tautom 99.6 9.5E-16 3.2E-20 87.4 6.1 59 59-117 4-62 (63)
28 3ej9_A Alpha-subunit of trans- 99.6 1.4E-15 4.7E-20 90.7 6.3 60 60-119 3-62 (76)
29 3e6q_A Putative 5-carboxymethy 99.5 3.6E-13 1.2E-17 89.4 11.1 111 1-111 22-138 (146)
30 1otg_A 5-carboxymethyl-2-hydro 99.4 1.4E-12 4.9E-17 84.4 9.5 110 2-111 1-118 (125)
31 3ej9_B Beta-subunit of trans-3 99.4 1.7E-12 5.8E-17 74.4 6.0 57 60-116 2-58 (70)
32 1gyx_A YDCE, B1461, hypothetic 99.3 1.2E-12 4.1E-17 77.7 5.1 51 60-110 2-53 (76)
33 3abf_A 4-oxalocrotonate tautom 99.3 1.4E-12 4.7E-17 74.6 3.7 55 1-55 1-57 (64)
34 2x4k_A 4-oxalocrotonate tautom 99.2 3.6E-11 1.2E-15 68.1 4.8 55 1-55 3-59 (63)
35 3mb2_A 4-oxalocrotonate tautom 99.1 1.1E-10 3.6E-15 68.5 4.8 55 1-55 1-57 (72)
36 3ej9_A Alpha-subunit of trans- 98.9 1.9E-09 6.4E-14 63.8 6.0 55 1-55 1-57 (76)
37 3n4h_A Putative tautomerase; C 98.8 5.3E-09 1.8E-13 69.1 6.1 58 60-117 2-60 (148)
38 3m20_A 4-oxalocrotonate tautom 98.8 1.5E-08 5E-13 57.5 5.4 53 2-55 1-55 (62)
39 2aal_A Malonate semialdehyde d 98.7 3.9E-08 1.3E-12 63.6 7.6 53 60-112 3-55 (131)
40 3mlc_A FG41 malonate semialdeh 98.7 2.8E-08 9.4E-13 65.0 6.3 53 60-112 2-54 (136)
41 3c6v_A Probable tautomerase/de 98.7 4.6E-08 1.6E-12 65.7 6.8 59 57-116 21-80 (161)
42 3mb2_B 4-oxalocrotonate tautom 98.7 7E-08 2.4E-12 55.4 6.3 47 61-107 3-51 (72)
43 3ry0_A Putative tautomerase; o 98.7 5.5E-08 1.9E-12 55.5 5.8 54 2-55 1-56 (65)
44 3m21_A Probable tautomerase HP 98.7 7.5E-08 2.6E-12 55.3 6.3 54 2-55 1-59 (67)
45 3mf7_A CIS-3-chloroacrylic aci 98.6 6.4E-08 2.2E-12 64.2 6.1 56 62-117 4-60 (149)
46 2opa_A Probable tautomerase YW 98.6 1.8E-07 6E-12 52.4 5.8 54 2-55 1-56 (61)
47 1otf_A 4-oxalocrotonate tautom 98.5 2.3E-07 7.9E-12 52.0 6.0 54 2-55 1-56 (62)
48 1mww_A Hypothetical protein HI 98.5 7.6E-08 2.6E-12 61.9 3.4 52 61-112 2-53 (128)
49 3ej9_B Beta-subunit of trans-3 98.4 6.5E-07 2.2E-11 51.2 5.9 53 2-54 1-55 (70)
50 2wkb_A Macrophage migration in 98.2 2.7E-06 9.3E-11 54.4 5.7 55 1-55 57-113 (125)
51 3b64_A Macrophage migration in 98.1 5.1E-06 1.7E-10 52.1 5.4 54 1-54 57-110 (112)
52 2xcz_A Possible ATLS1-like lig 98.1 1E-05 3.4E-10 50.9 6.2 52 60-114 3-54 (115)
53 1hfo_A Migration inhibitory fa 98.1 4.8E-06 1.6E-10 52.2 4.6 54 1-54 56-111 (113)
54 1gyx_A YDCE, B1461, hypothetic 98.0 7.3E-06 2.5E-10 48.0 4.0 44 2-45 1-45 (76)
55 1uiz_A MIF, macrophage migrati 98.0 8.5E-06 2.9E-10 51.2 4.5 55 1-55 57-113 (115)
56 2os5_A Acemif; macrophage migr 97.9 2E-05 6.7E-10 49.9 5.0 55 1-55 57-113 (119)
57 1u9d_A Hypothetical protein VC 97.7 0.00012 4.1E-09 46.8 6.0 52 1-54 67-120 (122)
58 3t5s_A Gilaa.00834.A, macropha 97.5 0.00017 6E-09 46.7 5.5 53 3-55 80-134 (135)
59 3fwu_A Macrophage migration in 97.4 0.00027 9.1E-09 45.7 5.5 52 3-54 80-131 (133)
60 4dh4_A MIF; trimer, isomerase; 97.3 0.0002 6.7E-09 44.9 3.7 52 3-54 59-112 (114)
61 3fwt_A Macrophage migration in 97.2 0.0013 4.5E-08 42.4 7.0 57 56-114 19-75 (133)
62 3djh_A Macrophage migration in 97.0 0.00099 3.4E-08 41.7 4.8 53 3-55 58-112 (114)
63 3mb2_B 4-oxalocrotonate tautom 96.8 0.002 6.8E-08 36.9 4.3 42 2-43 1-44 (72)
64 3kan_A D-dopachrome tautomeras 95.8 0.018 6E-07 36.1 4.8 52 4-55 59-113 (117)
65 1otg_A 5-carboxymethyl-2-hydro 95.6 0.0072 2.5E-07 38.4 2.5 45 1-45 60-108 (125)
66 1n91_A ORF, hypothetical prote 91.1 0.69 2.4E-05 28.6 5.7 57 38-99 16-73 (108)
67 2y9j_Y Lipoprotein PRGK, prote 87.4 2 6.7E-05 28.6 6.2 79 19-102 84-169 (170)
68 3e6q_A Putative 5-carboxymethy 85.6 0.85 2.9E-05 29.6 3.6 42 4-45 85-129 (146)
69 3lax_A Phenylacetate-coenzyme 81.9 2.3 7.9E-05 25.4 4.3 41 54-94 43-83 (109)
70 1yfs_A Alanyl-tRNA synthetase; 72.7 3.4 0.00012 31.8 3.6 48 56-103 86-133 (465)
71 1jwq_A N-acetylmuramoyl-L-alan 68.5 22 0.00076 23.4 9.3 71 17-91 101-178 (179)
72 3lxy_A 4-hydroxythreonine-4-ph 67.2 7.5 0.00026 28.6 4.4 34 67-100 178-211 (334)
73 1oey_A P67-PHOX, neutrophil cy 62.2 6.4 0.00022 23.0 2.6 29 81-109 29-57 (83)
74 3hrd_B Nicotinate dehydrogenas 61.5 7.5 0.00026 28.3 3.5 38 76-113 48-87 (330)
75 3gxs_A Phenylacetate-coenzyme 61.0 23 0.00078 20.9 6.3 73 23-106 18-95 (109)
76 3k13_A 5-methyltetrahydrofolat 59.2 17 0.00057 26.3 4.9 42 58-99 134-178 (300)
77 3n3k_B Ubiquitin; hydrolase, p 58.9 11 0.00036 21.0 3.2 25 78-102 26-50 (85)
78 2kxo_A Cell division topologic 57.9 21 0.00073 21.2 4.5 36 68-103 34-69 (95)
79 3hy0_A Alanyl-tRNA synthetase; 57.4 11 0.00036 28.9 3.7 43 57-102 86-133 (441)
80 3b08_A Polyubiquitin-C, ubiqui 56.8 28 0.00097 21.4 5.3 82 19-101 21-122 (152)
81 3a9j_A Ubiquitin; protein comp 56.4 13 0.00044 20.0 3.2 23 79-101 24-46 (76)
82 1rm6_A 4-hydroxybenzoyl-COA re 55.9 8.2 0.00028 31.4 3.1 80 17-98 482-561 (769)
83 1ndd_A NEDD8, protein (ubiquit 55.6 13 0.00046 19.9 3.2 23 79-101 24-46 (76)
84 1wh3_A 59 kDa 2'-5'-oligoadeny 54.9 17 0.00058 20.4 3.7 24 78-101 30-53 (87)
85 3hrd_B Nicotinate dehydrogenas 54.7 5.2 0.00018 29.2 1.6 29 17-45 46-74 (330)
86 1t0a_A 2C-methyl-D-erythritol 54.6 7.8 0.00027 25.5 2.3 50 60-113 95-144 (159)
87 1yxo_A 4-hydroxythreonine-4-ph 54.5 47 0.0016 24.3 6.7 32 68-99 174-205 (328)
88 1n91_A ORF, hypothetical prote 53.9 26 0.0009 21.4 4.5 33 8-41 40-72 (108)
89 2pmp_A 2-C-methyl-D-erythritol 53.6 8.2 0.00028 25.4 2.3 88 18-112 41-144 (160)
90 3mtn_B UBA80, ubcep1, ubiquiti 53.5 12 0.0004 20.8 2.8 24 78-101 26-49 (85)
91 2kjr_A CG11242; UBL, ubiquitin 53.2 21 0.00073 20.9 4.0 25 78-102 40-64 (95)
92 1gx1_A 2-C-methyl-D-erythritol 52.9 8.7 0.0003 25.3 2.3 50 60-113 94-143 (160)
93 3re3_A 2-C-methyl-D-erythritol 52.2 8.4 0.00029 25.4 2.2 89 17-112 43-147 (162)
94 2hi1_A 4-hydroxythreonine-4-ph 52.2 48 0.0016 24.3 6.4 31 68-99 181-211 (330)
95 3f0d_A 2-C-methyl-D-erythritol 51.5 9.1 0.00031 25.7 2.3 88 18-112 61-164 (183)
96 1wxv_A BAG-family molecular ch 51.5 16 0.00056 20.9 3.2 24 78-101 34-57 (92)
97 2kj6_A Tubulin folding cofacto 51.5 23 0.00078 20.9 3.9 25 78-102 39-63 (97)
98 1t3q_B Quinoline 2-oxidoreduct 51.1 9.3 0.00032 31.2 2.7 79 17-98 507-585 (788)
99 1wy8_A NP95-like ring finger p 51.0 20 0.0007 20.1 3.6 24 78-101 32-55 (89)
100 2faz_A Ubiquitin-like containi 50.9 18 0.0006 19.8 3.2 23 79-101 28-50 (78)
101 2dzi_A Ubiquitin-like protein 50.7 18 0.00061 19.8 3.2 23 79-101 31-53 (81)
102 2kd0_A LRR repeats and ubiquit 50.4 17 0.00059 20.6 3.2 23 79-101 35-57 (85)
103 1ffv_B CUTL, molybdoprotein of 50.1 8.9 0.00031 31.4 2.5 80 17-98 523-602 (803)
104 3fiq_A OBP1, RCG36470, odorant 49.9 18 0.00061 23.0 3.5 38 60-99 112-149 (157)
105 1n62_B Carbon monoxide dehydro 49.9 9.3 0.00032 31.3 2.5 80 17-98 529-608 (809)
106 2bwf_A Ubiquitin-like protein 49.7 19 0.00065 19.5 3.2 23 79-101 27-49 (77)
107 2kan_A Uncharacterized protein 49.6 21 0.0007 20.8 3.5 24 78-101 37-60 (94)
108 3phx_B Ubiquitin-like protein 49.6 19 0.00063 19.8 3.2 24 78-101 27-50 (79)
109 2kk8_A Uncharacterized protein 49.0 19 0.00065 20.4 3.2 24 78-101 33-56 (84)
110 1sif_A Ubiquitin; hydrophobic 48.5 16 0.00053 20.9 2.8 24 78-101 32-55 (88)
111 3k9o_B Ubiquitin, UBB+1; E2-25 48.0 20 0.00067 20.5 3.2 24 78-101 24-47 (96)
112 1yj7_A ESCJ; mixed alpha/beta, 47.9 56 0.0019 21.4 7.3 74 23-105 94-168 (171)
113 2pmp_A 2-C-methyl-D-erythritol 47.9 45 0.0015 21.9 5.1 39 18-56 109-147 (160)
114 2daf_A FLJ35834 protein; hypot 47.7 22 0.00074 22.2 3.4 23 79-101 40-62 (118)
115 1t0a_A 2C-methyl-D-erythritol 47.4 45 0.0015 21.8 5.1 39 18-56 108-146 (159)
116 2w3s_B Xanthine dehydrogenase; 46.6 8.3 0.00028 31.5 1.8 80 17-98 489-568 (777)
117 1wm3_A Ubiquitin-like protein 46.2 21 0.00071 19.6 3.0 23 79-101 25-47 (72)
118 1yx5_B Ubiquitin; proteasome, 46.2 22 0.00075 20.5 3.3 24 78-101 23-46 (98)
119 4eew_A Large proline-rich prot 45.6 23 0.00078 19.9 3.2 23 79-101 41-63 (88)
120 4b6w_A Tubulin-specific chaper 45.5 24 0.00081 20.3 3.2 25 79-103 28-52 (86)
121 1t0y_A Tubulin folding cofacto 45.2 29 0.001 21.2 3.8 24 79-102 31-54 (122)
122 1gx1_A 2-C-methyl-D-erythritol 45.2 51 0.0017 21.6 5.1 39 18-56 107-145 (160)
123 1dd4_C 50S ribosomal protein L 45.1 20 0.00068 17.9 2.4 16 79-94 19-34 (40)
124 1uh6_A Ubiquitin-like 5; beta- 45.1 19 0.00064 21.6 2.8 26 77-102 50-75 (100)
125 1wx7_A Ubiquilin 3; ubiquitin- 44.8 28 0.00094 20.5 3.6 24 78-101 39-62 (106)
126 3lhe_A GNTR family transcripti 44.6 51 0.0018 20.0 6.5 72 26-104 23-98 (143)
127 1wju_A NEDD8 ultimate buster-1 44.4 24 0.00081 21.2 3.2 24 78-101 42-65 (100)
128 2uyz_B Small ubiquitin-related 44.1 23 0.0008 19.4 3.0 21 81-101 29-49 (79)
129 1yqb_A Ubiquilin 3; structural 44.0 24 0.00082 20.7 3.2 24 78-101 44-67 (100)
130 4fbj_B NEDD8; effector-HOST ta 43.8 20 0.0007 20.3 2.8 24 78-101 23-46 (88)
131 2hj8_A Interferon-induced 17 k 43.7 21 0.0007 20.3 2.8 24 79-102 28-51 (88)
132 3plu_A Ubiquitin-like modifier 43.7 25 0.00087 20.8 3.2 25 77-101 43-67 (93)
133 3a4r_A Nfatc2-interacting prot 43.6 25 0.00085 19.7 3.1 23 79-101 32-54 (79)
134 2zws_A Neutral ceramidase; pri 43.3 49 0.0017 26.4 5.7 50 55-112 53-104 (646)
135 3b6n_A 2-C-methyl-D-erythritol 43.2 18 0.00061 24.4 2.7 90 17-113 65-170 (187)
136 2klc_A Ubiquilin-1; ubiquitin- 43.2 25 0.00086 20.6 3.2 24 78-101 47-70 (101)
137 3hma_A N-acetylmuramoyl-L-alan 43.1 39 0.0013 21.7 4.3 22 76-97 110-131 (157)
138 3re3_A 2-C-methyl-D-erythritol 43.0 60 0.002 21.3 5.2 39 18-56 112-150 (162)
139 4dwf_A HLA-B-associated transc 42.9 26 0.0009 19.7 3.2 24 78-101 28-51 (90)
140 2io0_B Small ubiquitin-related 42.9 30 0.001 20.1 3.5 23 79-101 29-51 (91)
141 2l7r_A Ubiquitin-like protein 42.8 21 0.00072 20.6 2.8 24 78-101 40-63 (93)
142 3f0d_A 2-C-methyl-D-erythritol 42.7 58 0.002 21.8 5.1 39 18-56 129-167 (183)
143 3v6c_B Ubiquitin; structural g 42.0 22 0.00077 20.2 2.8 24 78-101 40-63 (91)
144 3dbh_I NEDD8; cell cycle, acti 41.7 17 0.00059 20.3 2.2 24 78-101 35-58 (88)
145 1v5t_A 8430435I17RIK protein; 41.6 29 0.00099 19.8 3.2 22 78-99 30-51 (90)
146 4hcn_B Polyubiquitin, ubiquiti 41.4 23 0.00078 20.6 2.8 24 78-101 45-68 (98)
147 1vku_A Acyl carrier protein; T 41.4 25 0.00085 20.8 3.0 25 72-96 13-37 (100)
148 2io1_B Small ubiquitin-related 41.1 27 0.00091 20.5 3.0 23 79-101 31-53 (94)
149 1rm6_A 4-hydroxybenzoyl-COA re 40.9 21 0.00072 29.0 3.3 38 76-113 484-523 (769)
150 1v6e_A Cytoskeleton-associated 40.5 19 0.00065 20.9 2.3 25 78-102 31-55 (95)
151 3b6n_A 2-C-methyl-D-erythritol 40.5 82 0.0028 21.2 5.8 40 17-56 133-172 (187)
152 2z5b_A Protein YPL144W, DMP1; 39.7 75 0.0026 20.5 7.0 56 16-90 95-150 (151)
153 3td3_A Outer membrane protein 39.2 34 0.0012 20.6 3.5 24 77-100 70-93 (123)
154 2w9j_A Signal recognition part 39.1 43 0.0015 19.7 3.7 69 17-89 5-82 (91)
155 3s26_A Neutrophil gelatinase-a 38.6 61 0.0021 21.0 4.9 32 69-101 142-173 (190)
156 3ddv_A Transcriptional regulat 38.6 66 0.0023 19.6 6.4 73 27-103 21-94 (145)
157 2hqs_H Peptidoglycan-associate 38.2 46 0.0016 20.0 3.9 28 71-99 52-83 (118)
158 2ook_A Hypothetical protein; s 37.9 67 0.0023 19.6 4.7 48 56-104 17-64 (127)
159 1wh9_A 40S ribosomal protein S 37.8 61 0.0021 18.9 4.8 75 20-106 8-85 (92)
160 2d07_B Ubiquitin-like protein 37.8 32 0.0011 20.0 3.0 23 79-101 41-63 (93)
161 1wyw_B Ubiquitin-like protein 37.6 32 0.0011 19.9 3.0 21 81-101 47-67 (97)
162 2ztg_A Alanyl-tRNA synthetase; 37.4 17 0.00058 29.6 2.2 32 74-112 163-195 (739)
163 2ojr_A Ubiquitin; lanthide-bin 37.1 43 0.0015 19.9 3.6 24 78-101 58-81 (111)
164 2q3l_A Uncharacterized protein 36.6 29 0.001 21.3 2.9 44 57-103 18-63 (126)
165 1v5o_A 1700011N24RIK protein; 36.3 24 0.00083 20.7 2.4 24 78-101 34-57 (102)
166 1j27_A Hypothetical protein TT 36.3 70 0.0024 19.2 4.8 34 59-93 8-41 (102)
167 2w3s_B Xanthine dehydrogenase; 36.2 22 0.00075 29.0 2.7 39 76-114 491-531 (777)
168 2kdi_A Ubiquitin, vacuolar pro 36.2 37 0.0013 20.4 3.2 23 79-101 33-55 (114)
169 1j8c_A Ubiquitin-like protein 35.9 45 0.0016 20.4 3.7 24 78-101 54-77 (125)
170 3vdz_A Ubiquitin-40S ribosomal 35.8 38 0.0013 20.2 3.2 24 78-101 58-81 (111)
171 3pa8_A Toxin B; CLAN CD cystei 35.4 1.2E+02 0.0039 21.4 6.5 84 24-107 47-159 (254)
172 2lol_A ACP, acyl carrier prote 35.1 36 0.0012 18.5 2.9 22 75-96 5-26 (81)
173 2yci_X 5-methyltetrahydrofolat 35.1 65 0.0022 22.7 4.8 41 58-99 126-169 (271)
174 1wx8_A Riken cDNA 4931431F19; 34.9 24 0.00082 20.2 2.1 24 78-101 39-62 (96)
175 3d2y_A N-acetylmuramoyl-L-alan 33.6 56 0.0019 22.8 4.2 30 69-99 122-151 (261)
176 2kvr_A Ubiquitin carboxyl-term 33.4 27 0.00094 21.9 2.3 55 38-99 30-89 (130)
177 1wgd_A Homocysteine-responsive 33.3 45 0.0015 18.9 3.2 24 78-101 32-57 (93)
178 3m63_B Ubiquitin domain-contai 33.0 33 0.0011 20.2 2.5 24 78-101 50-73 (101)
179 2cnr_A FAS, ACP, acyl carrier 32.9 41 0.0014 18.2 2.9 22 75-96 6-27 (82)
180 1n62_B Carbon monoxide dehydro 32.9 33 0.0011 28.1 3.2 38 76-113 531-570 (809)
181 2pa8_L DNA-directed RNA polyme 32.8 55 0.0019 19.1 3.5 26 2-29 53-78 (92)
182 1wjn_A Tubulin-folding protein 32.5 43 0.0015 19.3 3.0 25 78-102 35-59 (97)
183 3t12_B Gliding protein MGLB; G 32.3 95 0.0032 19.5 6.4 66 23-89 65-134 (136)
184 3m62_B UV excision repair prot 32.3 34 0.0012 20.2 2.5 24 78-101 24-47 (106)
185 2kzr_A Ubiquitin thioesterase 32.2 28 0.00096 19.7 2.1 24 78-101 23-46 (86)
186 1x3o_A Acyl carrier protein; s 31.9 35 0.0012 18.4 2.5 22 75-96 4-25 (80)
187 4di1_A Enoyl-COA hydratase ECH 31.9 1.3E+02 0.0045 21.0 6.6 83 3-93 34-116 (277)
188 2dnw_A Acyl carrier protein; A 31.5 28 0.00095 20.2 2.0 27 70-96 9-35 (99)
189 3gzm_A Acyl carrier protein; h 31.5 36 0.0012 18.7 2.5 22 75-96 4-25 (81)
190 2zze_A Alanyl-tRNA synthetase; 31.0 38 0.0013 27.7 3.3 52 56-112 140-196 (752)
191 1ffv_B CUTL, molybdoprotein of 31.0 32 0.0011 28.2 2.9 29 76-104 525-553 (803)
192 1ttn_A DC-UBP, dendritic cell- 30.8 46 0.0016 19.5 3.0 24 78-101 46-69 (106)
193 1wgg_A Ubiquitin carboxyl-term 30.5 28 0.00097 20.2 1.9 24 78-101 30-53 (96)
194 2qnw_A Acyl carrier protein; m 30.5 25 0.00085 19.4 1.6 22 75-96 6-27 (82)
195 3sao_A Extracellular fatty aci 30.3 68 0.0023 20.0 3.9 30 69-99 116-145 (160)
196 2yz0_A Serine/threonine-protei 30.3 60 0.0021 19.9 3.6 35 1-35 78-112 (138)
197 4dbg_A Ranbp-type and C3HC4-ty 30.2 55 0.0019 19.7 3.2 23 79-101 50-72 (105)
198 1we7_A SF3A1 protein; structur 29.9 58 0.002 19.4 3.4 21 81-101 61-81 (115)
199 1t6a_A Rbstp2229 gene product; 29.9 1E+02 0.0035 19.2 4.6 37 53-90 74-110 (126)
200 2cs4_A Protein C12ORF2; GTP bi 29.6 92 0.0031 18.5 5.0 37 17-53 26-62 (95)
201 3nvz_C Xanthine dehydrogenase/ 29.6 26 0.00088 28.5 2.1 38 77-114 472-511 (755)
202 2eke_C Ubiquitin-like protein 29.5 52 0.0018 19.8 3.0 23 79-101 54-76 (106)
203 3h0g_K DNA-directed RNA polyme 29.5 75 0.0026 19.7 3.8 26 2-29 70-95 (123)
204 1vq8_X 50S ribosomal protein L 29.5 48 0.0016 19.6 2.8 24 75-98 28-51 (92)
205 2kwl_A ACP, acyl carrier prote 29.2 42 0.0014 18.4 2.5 22 75-96 8-29 (84)
206 1xov_A PLY protein, plypsa; al 28.8 1.7E+02 0.0057 21.2 7.0 74 17-94 111-191 (326)
207 2ogg_A Trehalose operon transc 28.7 1E+02 0.0034 18.7 6.3 73 26-102 23-96 (152)
208 2l9f_A CALE8, meacp; transfera 28.5 42 0.0014 20.2 2.5 20 77-96 15-34 (102)
209 1qlm_A Methenyltetrahydrometha 28.4 50 0.0017 24.1 3.2 39 57-103 133-171 (316)
210 1ooh_A Odorant binding protein 28.1 15 0.0005 22.1 0.3 28 68-95 2-29 (126)
211 4aty_A Terephthalate 1,2-CIS-d 28.0 1.7E+02 0.0058 21.3 6.1 71 24-100 155-227 (349)
212 4fyj_A PTH, peptidyl-tRNA hydr 27.9 67 0.0023 21.7 3.6 20 86-105 86-105 (199)
213 3v2l_A AGAP005208-PA; odorant 27.8 30 0.001 20.4 1.8 28 69-96 1-28 (120)
214 1wfm_A Synaptotagmin XIII; C2 27.8 49 0.0017 20.1 2.8 30 35-64 24-53 (138)
215 3aq9_A Group 1 truncated hemog 27.7 29 0.00098 20.9 1.7 60 17-94 43-102 (121)
216 1v86_A DNA segment, CHR 7, way 27.6 18 0.00061 21.0 0.7 24 78-101 39-62 (95)
217 3b21_A ORF169B, OSPI; bacteria 27.5 1.3E+02 0.0043 19.5 4.7 51 13-64 119-170 (220)
218 1we6_A Splicing factor, putati 27.2 45 0.0015 19.7 2.5 22 80-101 56-77 (111)
219 1x1m_A Ubiquitin-like protein 26.9 84 0.0029 18.4 3.7 24 78-101 47-73 (107)
220 1ais_A TBP, protein (tata-bind 26.8 1.4E+02 0.0048 19.7 5.4 36 56-92 52-93 (182)
221 3nea_A PTH, peptidyl-tRNA hydr 26.7 70 0.0024 21.8 3.6 20 86-105 99-118 (207)
222 2dzm_A FAS-associated factor 1 26.7 38 0.0013 20.1 2.0 23 78-100 31-53 (100)
223 2v4i_A Glutamate N-acetyltrans 26.6 1.4E+02 0.0048 19.7 5.1 33 69-101 72-104 (173)
224 2lxa_A Ubiquitin-like protein 26.3 67 0.0023 18.4 3.0 24 78-101 26-50 (87)
225 2day_A Ring finger protein 25; 26.2 1.1E+02 0.0038 18.3 4.9 33 60-92 77-109 (128)
226 1yb0_A Prophage lambdaba02, N- 25.9 1.1E+02 0.0038 19.3 4.4 40 59-98 85-128 (159)
227 1uel_A HHR23B, UV excision rep 25.9 91 0.0031 17.7 3.7 23 79-101 24-49 (95)
228 2k8h_A Small ubiquitin protein 25.8 45 0.0015 20.2 2.3 24 79-102 50-73 (110)
229 2ebm_A RWD domain-containing p 25.7 1.1E+02 0.0039 18.3 5.0 33 60-92 73-105 (128)
230 2lxb_A Small glutamine-rich te 25.7 50 0.0017 18.8 2.3 16 73-88 6-21 (74)
231 2l76_A Nfatc2-interacting prot 25.6 68 0.0023 19.1 3.0 23 80-102 45-67 (95)
232 1f80_D Acyl carrier protein; t 25.5 37 0.0013 18.4 1.8 22 75-96 6-27 (81)
233 1tke_A Threonyl-tRNA synthetas 25.3 1.2E+02 0.0041 20.3 4.7 35 56-90 99-133 (224)
234 3bx6_A Alpha-1-acid glycoprote 25.3 33 0.0011 22.8 1.8 30 69-99 129-158 (192)
235 2ikk_A Hypothetical transcript 25.2 1.3E+02 0.0044 18.8 6.7 74 26-103 44-119 (173)
236 1f6y_A 5-methyltetrahydrofolat 25.2 1.2E+02 0.0042 21.1 4.7 29 70-99 132-160 (262)
237 4dpo_A Conserved protein; stru 25.1 1.1E+02 0.0039 18.1 6.4 82 1-90 23-107 (119)
238 2p19_A Transcriptional regulat 25.1 1.2E+02 0.004 18.3 8.3 72 26-103 22-95 (149)
239 1vra_A Arginine biosynthesis b 25.1 1.7E+02 0.0057 20.0 5.8 32 69-100 103-134 (208)
240 1ryb_A CRS2; alpha-beta, hydro 25.0 81 0.0028 21.4 3.6 21 85-105 91-111 (205)
241 3tuf_A Stage III sporulation p 24.9 71 0.0024 21.6 3.3 39 58-102 157-195 (197)
242 2jpq_A UPF0352 protein VP2129; 24.7 1.1E+02 0.0037 17.7 3.9 27 68-94 48-74 (83)
243 4gvq_A Methenyltetrahydrometha 24.7 63 0.0022 23.5 3.2 38 58-103 134-171 (316)
244 3kqf_A Enoyl-COA hydratase/iso 24.4 1.8E+02 0.006 20.0 8.8 83 3-94 19-104 (265)
245 3v2i_A PTH, peptidyl-tRNA hydr 24.4 82 0.0028 21.7 3.6 20 86-105 99-118 (222)
246 2l3v_A ACP, acyl carrier prote 24.4 62 0.0021 17.3 2.6 21 76-96 4-24 (79)
247 3kyd_D Small ubiquitin-related 24.3 92 0.0032 19.0 3.5 23 80-102 65-87 (115)
248 3j1z_P YIIP, cation efflux fam 24.2 1.8E+02 0.0063 20.4 5.7 76 18-105 214-291 (306)
249 2wyq_A HHR23A, UV excision rep 24.2 86 0.003 17.0 3.2 23 79-101 29-54 (85)
250 3b1l_X E3 ubiquitin-protein li 29.9 16 0.00055 19.8 0.0 25 78-102 23-47 (76)
251 2gan_A 182AA long hypothetical 24.1 1.3E+02 0.0045 18.5 6.8 81 17-99 47-146 (190)
252 1b4u_B LIGA, LIGB, protocatech 23.9 1.9E+02 0.0067 20.4 5.9 43 2-44 146-190 (302)
253 1dgj_A Aldehyde oxidoreductase 23.8 69 0.0024 26.6 3.7 37 77-113 659-700 (907)
254 2jrx_A UPF0352 protein YEJL; h 23.8 44 0.0015 19.3 1.8 25 13-37 50-74 (83)
255 2ibf_B Invasin IPAA, 70 kDa an 23.8 48 0.0016 14.4 1.5 14 21-34 8-21 (26)
256 1wz0_A Ubiquitin-like protein 23.5 35 0.0012 20.4 1.5 23 79-101 48-70 (104)
257 1oi2_A Hypothetical protein YC 23.4 2.3E+02 0.0079 21.1 6.2 40 59-99 288-327 (366)
258 2z2i_A PTH, peptidyl-tRNA hydr 23.4 72 0.0025 21.4 3.1 21 85-105 79-99 (191)
259 4a20_A Ubiquitin-like protein 23.4 52 0.0018 19.3 2.2 24 78-101 44-68 (98)
260 1twf_K B13.6, DNA-directed RNA 23.4 93 0.0032 19.2 3.4 26 2-29 71-96 (120)
261 1w55_A ISPD/ISPF bifunctional 23.4 45 0.0015 24.6 2.3 35 77-113 317-351 (371)
262 2jxx_A Nfatc2-interacting prot 23.3 85 0.0029 18.5 3.1 23 79-101 50-72 (97)
263 3f8l_A HTH-type transcriptiona 23.3 1.6E+02 0.0055 19.1 7.6 74 26-104 67-142 (201)
264 1qd1_A Formiminotransferase-cy 23.2 1.9E+02 0.0063 21.2 5.4 27 66-92 95-121 (325)
265 3w1s_C Ubiquitin-like protein 23.1 34 0.0012 20.1 1.3 37 78-120 35-72 (91)
266 2ava_A ACP I, acyl carrier pro 23.0 67 0.0023 17.4 2.6 20 75-94 3-22 (82)
267 2ve7_A Kinetochore protein HEC 23.0 30 0.001 25.0 1.2 28 82-109 226-258 (315)
268 2pth_A Peptidyl-tRNA hydrolase 22.7 74 0.0025 21.3 3.1 21 85-105 77-97 (193)
269 1iv3_A 2-C-methyl-D-erythritol 22.6 1.6E+02 0.0056 19.0 5.6 33 18-50 106-138 (152)
270 2ns6_A Mobilization protein A; 22.6 88 0.003 20.7 3.4 36 56-91 69-104 (185)
271 3goe_A DNA repair protein RAD6 22.6 1E+02 0.0035 17.8 3.2 21 81-101 35-56 (82)
272 1yfs_A Alanyl-tRNA synthetase; 22.5 2.7E+02 0.0091 21.4 6.4 51 17-98 104-154 (465)
273 1bkr_A Spectrin beta chain; fi 22.3 84 0.0029 18.7 3.1 25 69-93 54-78 (109)
274 4efo_A Serine/threonine-protei 22.3 97 0.0033 18.3 3.2 24 79-102 37-60 (94)
275 3ojc_A Putative aspartate/glut 22.3 1.3E+02 0.0044 20.3 4.4 30 63-92 5-34 (231)
276 2fnj_B Transcription elongatio 22.3 91 0.0031 19.1 3.2 23 79-101 25-47 (118)
277 2gpj_A Siderophore-interacting 22.3 85 0.0029 21.2 3.5 27 75-101 200-226 (252)
278 2kx2_A MTH1821, putative uncha 22.1 1.3E+02 0.0045 17.7 3.8 46 51-101 12-58 (96)
279 3cyp_B Chemotaxis protein MOTB 22.1 89 0.003 19.3 3.2 28 71-99 59-86 (138)
280 1l6x_B Minimized B-domain of p 22.0 78 0.0027 15.1 2.5 18 66-83 15-32 (34)
281 1klp_A ACP, ACPM, meromycolate 21.9 81 0.0028 18.7 2.9 23 74-96 5-27 (115)
282 2r2q_A Gamma-aminobutyric acid 21.9 54 0.0018 19.8 2.1 39 78-120 56-95 (110)
283 4ajy_B Transcription elongatio 21.8 95 0.0033 19.1 3.2 23 79-101 25-47 (118)
284 1xkr_A Chemotaxis protein CHEC 21.8 1.7E+02 0.0059 19.0 6.2 66 19-84 18-91 (206)
285 4hoy_A PTH, peptidyl-tRNA hydr 21.7 82 0.0028 21.1 3.1 22 84-105 78-99 (193)
286 2juz_A UPF0352 protein HI0840; 21.6 1.1E+02 0.0039 17.5 3.3 24 9-32 46-69 (80)
287 1yqe_A Hypothetical UPF0204 pr 21.6 2.2E+02 0.0076 20.2 9.8 65 19-87 115-183 (282)
288 3l0w_B Monoubiquitinated proli 21.5 1.1E+02 0.0036 19.8 3.6 24 78-101 23-46 (169)
289 1wmh_B Partitioning defective- 21.2 1.3E+02 0.0045 17.4 4.1 34 78-111 30-63 (86)
290 1xn9_A 30S ribosomal protein S 20.9 1.1E+02 0.0036 18.3 3.2 37 60-102 20-56 (101)
291 1wz3_A Autophagy 12B, ATG12B, 20.9 69 0.0024 18.9 2.4 23 78-102 40-62 (96)
292 3rt3_B Ubiquitin-like protein 20.8 95 0.0032 19.3 3.2 23 78-100 25-48 (159)
293 4gdk_A Ubiquitin-like protein 20.7 58 0.002 19.0 2.0 39 78-120 32-72 (91)
294 2nlv_A XISI protein-like; XISI 20.7 14 0.00049 22.8 -0.8 15 89-103 87-101 (112)
295 1mp9_A Tata-binding protein; t 20.6 2E+02 0.0068 19.2 5.7 28 64-92 70-97 (198)
296 1ur5_A Malate dehydrogenase; o 20.6 95 0.0032 21.9 3.5 34 78-118 149-182 (309)
297 3s57_A Alpha-ketoglutarate-dep 20.5 1.9E+02 0.0066 19.1 4.9 35 77-111 83-117 (204)
298 3h90_A Ferrous-iron efflux pum 20.5 2.2E+02 0.0074 19.6 10.4 75 18-104 205-281 (283)
299 4eqp_A Thermonuclease; staphyl 20.4 89 0.003 19.5 3.0 75 38-119 12-87 (143)
300 3pea_A Enoyl-COA hydratase/iso 20.4 2.1E+02 0.0073 19.5 5.8 84 3-94 16-100 (261)
301 2zsk_A PH1733, 226AA long hypo 20.3 1.4E+02 0.0049 19.8 4.2 41 63-103 4-45 (226)
302 1e5p_A Aphrodisin; lipocalin, 20.3 63 0.0021 19.8 2.2 29 69-98 114-142 (151)
303 3cnv_A Putative GNTR-family tr 20.2 1.6E+02 0.0054 17.9 8.9 73 26-102 33-109 (162)
304 2ju1_A Erythronolide synthase; 20.1 95 0.0033 17.2 2.9 26 71-96 15-41 (95)
No 1
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=100.00 E-value=5.5e-43 Score=225.27 Aligned_cols=114 Identities=29% Similarity=0.502 Sum_probs=111.3
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i 81 (121)
|+++++||++.+++ +++|++++++++|+++|||++|+||++++++.|+|||+++||+|++|+++|++++++|++++++|
T Consensus 1 P~i~~~TNv~~~~~-~~~~~~~ls~~~a~~lgKpe~~vmV~~~~~~~m~fgGs~~P~a~~~v~sig~~~~~~n~~~s~~i 79 (114)
T 3djh_A 1 PMFIVNTNVPRASV-PDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFGGSSEPCALCSLHSIGKIGGAQNRSYSKLL 79 (114)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHCCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHHH
T ss_pred CEEEEEecCCcccc-cHHHHHHHHHHHHHHHCCCHHHeEEEEeCCceEEEcCcCCCEEEEEEEEccCCCHHHHHHHHHHH
Confidence 99999999998876 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceee
Q 033334 82 SAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLH 116 (121)
Q Consensus 82 ~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~ 116 (121)
+++++++|||+++|+||.|+|++++||||||+||+
T Consensus 80 ~~~l~~~Lgi~~~riyI~f~d~~~~~~g~~G~tf~ 114 (114)
T 3djh_A 80 CGLLAERLRISPDRVYINYYDMNAANVGWNNSTFA 114 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEECC
T ss_pred HHHHHHHhCcCcceEEEEEEECCHHHeeECCEECc
Confidence 99999999999999999999999999999999984
No 2
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=100.00 E-value=2.9e-43 Score=227.62 Aligned_cols=116 Identities=24% Similarity=0.433 Sum_probs=111.9
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCCh-hHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNP-DVNKKLSAA 80 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~-e~~~~~~~~ 80 (121)
|+++++||++.+++ +++|++++++++|+++|||++|+||++++++.|+|||+++||||++|+++|++++ ++|++++++
T Consensus 1 P~i~l~TNv~~~~~-~~~l~~~ls~~~a~~lgKpe~~vmV~v~~~~~m~fgGs~~P~a~~~v~siG~~~~~~~n~~~s~~ 79 (117)
T 3kan_A 1 PFLELDTNLPANRV-PAGLEKRLCAAAASILGKPADRVNVTVRPGLAMALSGSTEPCAQLSISSIGVVGTAEDNRSHSAH 79 (117)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEecCccccc-hHHHHHHHHHHHHHHHCCChHHEEEEEeCCCeEEECCCCCceEEEEEEEecCCCcHHHHHHHHHH
Confidence 99999999998876 4789999999999999999999999999999999999999999999999999976 799999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeeh
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAV 118 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~ 118 (121)
|+++++++|||+++|+||.|.|++++||||||+||++|
T Consensus 80 i~~~l~~~Lgi~~~RiyI~f~d~~~~~~G~nG~tf~~~ 117 (117)
T 3kan_A 80 FFEFLTKELALGQDRILIRFFPLESWQIGKIGTVMTFL 117 (117)
T ss_dssp HHHHHHHHHTCCGGGEEEEEEEECGGGCEETTEEGGGC
T ss_pred HHHHHHHHhCcCcCeEEEEEEEcCHHHeeeCCEEeecC
Confidence 99999999999999999999999999999999999976
No 3
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=100.00 E-value=7.7e-43 Score=224.52 Aligned_cols=114 Identities=32% Similarity=0.531 Sum_probs=111.9
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i 81 (121)
|+++++||++.+++++++|++++++++++++|||++|+||++++++.|+|||+++||+|++|+++|++++++|++++++|
T Consensus 1 P~i~~~TNv~~~~~~~~~l~~~ls~~~a~~lgKPe~~v~V~~~~~~~m~fgGs~~p~a~v~i~~ig~~~~e~~~~l~~~i 80 (114)
T 4dh4_A 1 PKCMIFCPVAATPAQQDALLKDAEKAVADALGKPLSYVMVGYSQTGQMRFGGSSDPCAFIRVASIGGITSSTNCKIAAAL 80 (114)
T ss_dssp CEEEEEESSCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECSCCCBTTBCSCCEEEEEEEESCCCHHHHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHHCCChHHEEEEEeCCceEEECCcCCCeEEEEEEEEcCCCHHHHHHHHHHH
Confidence 99999999999777799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCCCCceeCCcee
Q 033334 82 SAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCL 115 (121)
Q Consensus 82 ~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~ 115 (121)
+++|+++|||+++|+||.|+|++++||||||+||
T Consensus 81 ~~~l~~~Lgi~~~riyI~f~d~~~~~wg~~G~tf 114 (114)
T 4dh4_A 81 SAACERHLGVPKNRIYTTFTNKSPSEWAMGDRTF 114 (114)
T ss_dssp HHHHHHHHCCCGGGEEEEEEEECGGGCEETTEEC
T ss_pred HHHHHHHhCcCcccEEEEEEeCCHHHeEECCEeC
Confidence 9999999999999999999999999999999997
No 4
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=100.00 E-value=1.1e-42 Score=229.74 Aligned_cols=114 Identities=26% Similarity=0.457 Sum_probs=94.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
||+++|+||++.+++++++|++++++++++++|||++|+||+++ ++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 22 MP~i~i~tnv~~~~~~~~~l~~~ls~~la~~lgKPe~~vmV~v~-~~~m~fgGs~dp~a~v~i~sig~~t~e~n~~~s~~ 100 (135)
T 3t5s_A 22 MPCAIVTTNADFTKDQADAFCLDMGQVLAKETGKPVSYCMAGVR-KADMSFGTSTDLCCFVDFYCIGVISQAKNPSISAA 100 (135)
T ss_dssp CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCSCGGGCEEEEE-ECCCCBTTBCCSCEEEEEECCC-----CCHHHHHH
T ss_pred cceEEEEecCccchhccchhHHHHHHHHHHhhCCchHHHHhhhh-hhhcccCcccceEEEEEEEEEEEEeccCCchHHHH
Confidence 99999999999987778999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCcee
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCL 115 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~ 115 (121)
|+++|+++|||+++|+||.|.|++++||||||+||
T Consensus 101 i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~nG~Tf 135 (135)
T 3t5s_A 101 ITGCLTQHFKVKPERVYISFNEAKGHNWGFNGSTF 135 (135)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEC-------------
T ss_pred HHHHHHHhcccCccEEEEEeccccCcccccCCCcC
Confidence 99999999999999999999999999999999997
No 5
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=100.00 E-value=3.8e-42 Score=226.71 Aligned_cols=113 Identities=23% Similarity=0.469 Sum_probs=110.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
||+++|+||++.+++++++|++++++++++++|||++|+||++++++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 21 MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~vmV~~~~~~~m~fgGs~dP~a~v~i~sig~~~~e~n~~~s~~ 100 (133)
T 3fwu_A 21 MPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPEKVTSI 100 (133)
T ss_dssp CCEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCccEEEEEEECCceEEECCcCCCEEEEEEEEcCCCCHHHHHHHHHH
Confidence 99999999999998867789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCcee
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCL 115 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~ 115 (121)
|+++|+++|||+++|+||.|.|+ +||||||+||
T Consensus 101 i~~~l~~~LgI~~~riyI~f~d~--~~wG~nG~tf 133 (133)
T 3fwu_A 101 VTAAITKECGIVADRIFVLYFSP--LHCGWNGTNF 133 (133)
T ss_dssp HHHHHHHHHCCCGGGEEEEEECC--SCCEETTEEC
T ss_pred HHHHHHHHhCcChhhEEEEEEEH--HHEeeCcEEC
Confidence 99999999999999999999999 9999999997
No 6
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=100.00 E-value=7.3e-42 Score=225.39 Aligned_cols=113 Identities=28% Similarity=0.505 Sum_probs=110.6
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
||+++|+||++.+++++++|++++++++++++|||++|+||++++++.|+|||+++||+|++|+++|++++++|++++++
T Consensus 21 MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~~~~m~fgGs~dP~a~v~v~sig~~~~e~n~~~s~~ 100 (133)
T 3fwt_A 21 MPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSDKTPISFQGSTAPAAYVRVESWGEYAPSKPKMMTPR 100 (133)
T ss_dssp EEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEECSCCCCBTTBCSSCEEEEEEEEECCCTHHHHHHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEECCceEEECCCCCCeEEEEEEECCCCCHHHHHHHHHH
Confidence 99999999999987778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCcee
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCL 115 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~ 115 (121)
|+++|+++|||+++|+||.|.|++ ||||||+||
T Consensus 101 i~~~l~~~LgI~~~rvyI~f~d~~--~wg~nG~Tf 133 (133)
T 3fwt_A 101 IAAAITKECGIPAERIYVFYYSTK--HCGWNGTNF 133 (133)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEEES--CCEETTEEC
T ss_pred HHHHHHHHhCcChhhEEEEEEEhh--hEeECCEeC
Confidence 999999999999999999999997 999999997
No 7
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=100.00 E-value=1.7e-39 Score=208.97 Aligned_cols=115 Identities=35% Similarity=0.561 Sum_probs=112.9
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
||+++|++|++.+++ +++|++++++++++++|||+++++|+++++..|+|||+++|+++++|+++|++++++|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~~~eqk~~l~~~ 79 (115)
T 1uiz_A 1 MPVFTIRTNVCRDSV-PDTLLSDLTKQLAKATGKPAEYIAIHIVPDQIMSFGDSTDPCAVCSLCSIGKIGGPQNKSYTKL 79 (115)
T ss_dssp CCEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSCCSHHHHHHHHHH
T ss_pred CCEEEEEecCCCchh-HHHHHHHHHHHHHHHHCcChhHEEEEEECCcceEECCCCCCeEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999888 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceee
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLH 116 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~ 116 (121)
|++.+++.||++++|+||.|+|++++||||||.||+
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~t~~ 115 (115)
T 1uiz_A 80 LCDILTKQLNIPANRVYINYYDLNAANVGWNGSTFA 115 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGEEETTEECC
T ss_pred HHHHHHHHhCcCcceEEEEEEECCHHHeeeCCEECC
Confidence 999999999999999999999999999999999984
No 8
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=100.00 E-value=3.2e-39 Score=207.71 Aligned_cols=115 Identities=34% Similarity=0.582 Sum_probs=111.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
||+++|++|++.+++ +++|++++++++++++|||+++++|+++++..|+|||+++|+++++|+++|++++++|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~~~~v~~~~~~~~~~~g~~~~~~~v~i~~~~g~t~eqk~~l~~~ 79 (115)
T 2xcz_A 1 MPLINIQASVPAVAD-ANSLLQELSSKLAELLGKPEKYVMTSLQCGVPMTFSGNTEPTCYVEVKSIGALDGSRTQEVSEL 79 (115)
T ss_dssp -CEEEEEESSCCCTT-HHHHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCTTHHHHHHHH
T ss_pred CCEEEEEecCCCchh-HHHHHHHHHHHHHHHHCCChHHEEEEEECCCceEECCCCCcEEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999888 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceee
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLH 116 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~ 116 (121)
|++.+++.||++++|+||.|+|++++||||||.||+
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~t~~ 115 (115)
T 2xcz_A 80 VCGHIEQNLGIPADRIYIGFEDVPARLWGWNGSTFG 115 (115)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEECC
T ss_pred HHHHHHHHhCcCcccEEEEEEECCHHHeeeCCEECc
Confidence 999999999999999999999999999999999974
No 9
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=100.00 E-value=8.2e-40 Score=213.45 Aligned_cols=120 Identities=31% Similarity=0.508 Sum_probs=104.5
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i 81 (121)
|+++|+||++.+++++++|++++++++++++|||++++||++.++..|+|||+++|++|++|+++|++++++|++++++|
T Consensus 1 P~i~i~tn~~~s~~~~~~l~~~l~~ala~~lgkPe~~~~V~~~~~~~~~~gg~~dp~~~v~I~~~~g~t~eqk~~l~~~i 80 (125)
T 2wkb_A 1 PCCELITNISIPDDKAQNTLSEIEDAISNILGKPVAYIMSNYDYQKNLRFSGSNEGYCFVRLTSIGGINRSNNSLLADKI 80 (125)
T ss_dssp CEEEEEESCCCCHHHHHHHHHHHHHHHHHHHCSCCTTCEEEEEECTTCEETTBCSSCEEEEEECC-----CTHHHHHHHH
T ss_pred CEEEEEecCCCchhhHHHHHHHHHHHHHHHhCCCHHHEEEEEEcCCceEeCCCCCCcEEEEEEECCCCCHHHHHHHHHHH
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehhcC
Q 033334 82 SAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVHQH 121 (121)
Q Consensus 82 ~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~~~ 121 (121)
++++.+.||++++|+||.|.|++++||||||++++++++|
T Consensus 81 ~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~~~~~~~~ 120 (125)
T 2wkb_A 81 TKILSNHLSVKPRRVYIEFRDCSAQNFAFSGSLFGGSRSH 120 (125)
T ss_dssp HHHHHHHHCCCGGGEEEEEEC----CEEEEGGGTC-----
T ss_pred HHHHHHHhCcCcceEEEEEEECCHHHeEECCEEhhhhhcc
Confidence 9999999999999999999999999999999999999886
No 10
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=100.00 E-value=2.3e-39 Score=209.61 Aligned_cols=117 Identities=22% Similarity=0.383 Sum_probs=113.4
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
||+++|++|++.+++ +++|++++++++++++|||+++++|+++++..|+|||+++|++|++|+++|++++|+|++++++
T Consensus 1 MP~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkP~~~~~v~~~~~~~~~~~g~~~~~~~i~I~~~~g~~~eqk~~l~~~ 79 (119)
T 2os5_A 1 MPMVRVATNLPDKDV-PANFEERLTDLLAESMNKPRNRIAIEVLAGQRITHGASRNPVAVIKVESIGALSADDNIRHTQK 79 (119)
T ss_dssp -CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCCCCBTTBCSSCEEEEEEESSCCCHHHHHHHHHH
T ss_pred CCEEEEEeCCCCchh-HHHHHHHHHHHHHHHHCcChHHEEEEEECCccEEEcCCCCCeEEEEEEEecCCCHHHHHHHHHH
Confidence 999999999999888 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeeh
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAV 118 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~ 118 (121)
|++++++.||++++|+||.|+|++++||||||++++++
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~~~~~ 117 (119)
T 2os5_A 80 ITQFCQDTLKLPKDKVIITYFDLQPIHVGFNGTTVAAA 117 (119)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEEHHHH
T ss_pred HHHHHHHHhCcCcccEEEEEEECCHHHeeECCEEhhhh
Confidence 99999999999999999999999999999999999865
No 11
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=100.00 E-value=2.1e-38 Score=203.24 Aligned_cols=113 Identities=35% Similarity=0.657 Sum_probs=111.0
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAI 81 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i 81 (121)
|+++|+||++.+++ +++|++++++++++++|||++++||+++++..|+|||+++|+++++|+++|++++++|++++++|
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~l~~~l~~~l~kPe~~~~v~~~~~~~~~~~g~~~~~~~i~i~~~~g~~~eqk~~l~~~i 79 (113)
T 1hfo_A 1 PIFTLNTNIKATDV-PSDFLSSTSALVGNILSKPGSYVAVHINTDQQLSFGGSTNPAAFGTLMSIGGIEPSRNRDHSAKL 79 (113)
T ss_dssp CEEEEEESSCGGGS-CTTHHHHHHHHHHHHHTCCGGGCEEEEECSCEEEETTBCSSCEEEEEEESSSCSHHHHHHHHHHH
T ss_pred CEEEEEecCCCccc-HHHHHHHHHHHHHHHHCCChHHEEEEEeCCccEEecCCCCCeEEEEEEEecCCCHHHHHHHHHHH
Confidence 99999999999888 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCCCCceeCCcee
Q 033334 82 SAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCL 115 (121)
Q Consensus 82 ~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~ 115 (121)
++.+++.||++++|+||.|+|++++||||||.||
T Consensus 80 ~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~tf 113 (113)
T 1hfo_A 80 FDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGTTF 113 (113)
T ss_dssp HHHHHHHHCCCGGGEEEEEEECCGGGEEETTEEC
T ss_pred HHHHHHHhCcCcCeEEEEEEECCHHHeeeCCEeC
Confidence 9999999999999999999999999999999986
No 12
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=100.00 E-value=1.7e-37 Score=198.83 Aligned_cols=111 Identities=24% Similarity=0.486 Sum_probs=108.9
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH-HHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVA-NIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~-~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
|+++|+||++.+++ +++|+++++++++ +++|||++++||+++++..|+|||+++|+++++|+++|++++++|++++++
T Consensus 1 P~i~i~tn~~~~~~-~~~l~~~~~~~l~~~~~gkPe~~~~v~~~~~~~~~~~G~~~~~~~i~i~~~~g~~~eqk~~l~~~ 79 (112)
T 3b64_A 1 PVIQTFVSTPLDHH-KRENLAQVYRAVTRDVLGKPEDLVMMTFHDSTPMHFFGSTDPVACVRVEALGGYGPSEPEKVTSI 79 (112)
T ss_dssp CEEEEEESSCCCHH-HHHHHHHHHHHHHHHTSCSCGGGCEEEEECSCCCCBTTBCSSCEEEEEECTTCCCTTHHHHHHHH
T ss_pred CEEEEEecCCCchh-HHHHHHHHHHHHHHHHhCCCHHHEEEEEeCCceEEECCCCCCEEEEEEEEcCCCCHHHHHHHHHH
Confidence 99999999999988 9999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCcee
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCL 115 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~ 115 (121)
|++.+++.||++++|+||.|+|++ ||||||.||
T Consensus 80 i~~~l~~~lgi~~~~v~I~~~e~~--~wg~~G~tf 112 (112)
T 3b64_A 80 VTAAITKECGIVADRIFVLYFSPL--HCGWNGTNF 112 (112)
T ss_dssp HHHHHHHHHCCCGGGEEEEEECCS--CCEETTEEC
T ss_pred HHHHHHHHhCcCcceEEEEEEEhh--HeeECCEEC
Confidence 999999999999999999999998 999999986
No 13
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=100.00 E-value=4.4e-33 Score=182.73 Aligned_cols=117 Identities=9% Similarity=0.115 Sum_probs=111.0
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCc--EEEEEEeCCceeeecC------CCCCeeEEEEEeeeCCChh
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEA--YVMIVLKGSVPMSFGG------TEDPAAYGELVSIGGLNPD 72 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~--~i~v~v~~~~~~~~gg------~~~p~~~v~i~~~g~~~~e 72 (121)
||+++|+++.+.+++++++|++++++++++.+|||++ +++++..+..+|.+|| +++|+++|+|+ ..|+++|
T Consensus 1 MP~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g~~l~~~~~~~~~~I~i~-~~grt~e 79 (131)
T 2aal_A 1 XPLLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLEDTGLGYGRSSAVVLLTVI-SRPRSEE 79 (131)
T ss_dssp -CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECCTTSCCCCCTTCEEEEEE-ESCCCHH
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCCccCCcCCCCCeEEEEEE-eCCCCHH
Confidence 9999999999999888999999999999999999999 8888888999999998 78999999999 6679999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeeh
Q 033334 73 VNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAV 118 (121)
Q Consensus 73 ~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~ 118 (121)
+|++++++|++.|.+.||++++++||.|.|++++||||||.++.++
T Consensus 80 qK~~l~~~l~~~l~~~lg~~~~~v~I~i~e~~~~~wg~gG~~~q~~ 125 (131)
T 2aal_A 80 QKVCFYKLLTGALERDCGISPDDVIVALVENSDADWSFGRGRAEFL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEECBTTBCHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEhhhc
Confidence 9999999999999999999999999999999999999999999765
No 14
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=99.97 E-value=5e-31 Score=172.27 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=110.5
Q ss_pred EEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCc--EEEEEEeCCceeeecC-CCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 4 LNISTNVKLDGVDTSSILSEATSTVANIIGKPEA--YVMIVLKGSVPMSFGG-TEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 4 i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~--~i~v~v~~~~~~~~gg-~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
++|+...+.+++++++|++++++++++.+|+|++ +++++..++.+|.+|| +++|+++|+|++.+++++|||++++++
T Consensus 2 v~I~~~~g~s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg~~~~~~~~i~i~~~~grt~eqK~~l~~~ 81 (128)
T 1mww_A 2 ITVFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPFDRSDDYTVIEINLMAGRMEGTKKRLIKM 81 (128)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCTTSCTTCEEEEEEEETTCCHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCCCCCCCcEEEEEEECCCCCHHHHHHHHHH
Confidence 6778888888888999999999999999999999 9999999999999998 899999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehh
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVH 119 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~ 119 (121)
|++.+.+.||++++++||.|.|++++||||||.++++++
T Consensus 82 l~~~l~~~lg~~~~~v~V~i~e~~~~~wg~gG~~~~~~~ 120 (128)
T 1mww_A 82 LFSELEYKLGIRAHDVEITIKEQPAHCWGFRGMTGDEAR 120 (128)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEEECGGGEEETTEETTTCC
T ss_pred HHHHHHHHhCcChhhEEEEEEECCHHHeeECCEEHHHHh
Confidence 999999999999999999999999999999999998765
No 15
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=99.93 E-value=6.6e-26 Score=151.29 Aligned_cols=116 Identities=9% Similarity=0.096 Sum_probs=103.6
Q ss_pred eEEEEeCCCC-CCcChHHHHHHHHHHHHHHhCCCCcEEEEEEe--CCceeeecCCCC--CeeEEEEEeeeCCChhHHHHH
Q 033334 3 CLNISTNVKL-DGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTED--PAAYGELVSIGGLNPDVNKKL 77 (121)
Q Consensus 3 ~i~i~tn~~~-~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~--~~~~~~~gg~~~--p~~~v~i~~~g~~~~e~~~~~ 77 (121)
+++|+...+. +++++++|.+.+++++++.+|+|+++++|.+. +..+|.+||... +.++|++++++|+++++|+++
T Consensus 2 ~~~I~~~~g~~s~e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~gG~~~s~~~~~I~i~~~~Grt~eqk~~l 81 (148)
T 3n4h_A 2 TYTCWSQRIRISREAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIAAQSASENHIWVQATIRSGRTEKQKEEL 81 (148)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEETTEECCTTCEEEEEEEESCCCHHHHHHH
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEECCEEccCcEEEEEEEEECCCCHHHHHHH
Confidence 5788888886 88889999999999999999999998888776 578999999654 459999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeeh
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAV 118 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~ 118 (121)
+++|++.+.+.||++++++||.|++++++|||++|.++.+.
T Consensus 82 ~~~l~~~l~~~lgi~~~~v~V~i~E~~~~~wg~gG~~~~~~ 122 (148)
T 3n4h_A 82 LLRLTQEIALILGIPNEEVWVYITEIPGSNMTEYGRLLMEP 122 (148)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEEEEECGGGCCCSSCC----
T ss_pred HHHHHHHHHHHhCcCcCcEEEEEEEcCHHHeeECCEECCCC
Confidence 99999999999999999999999999999999999998764
No 16
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=99.92 E-value=1.8e-24 Score=142.64 Aligned_cols=116 Identities=13% Similarity=0.152 Sum_probs=105.5
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEE--EEEeCCceeeec-----C-CCCCeeEEEEEeeeCCChhH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVM--IVLKGSVPMSFG-----G-TEDPAAYGELVSIGGLNPDV 73 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~--v~v~~~~~~~~g-----g-~~~p~~~v~i~~~g~~~~e~ 73 (121)
|+++|++..+.++++++++.+.+++++++.+|.|++.+. ++-.+..+|.++ | ++++.++|+|+..+|++.||
T Consensus 1 P~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~~ylg~~rs~~~v~I~I~~~~gRt~Eq 80 (136)
T 3mlc_A 1 PLIRIDLTSDRSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAEDAGLGFQRSPSVVIIHVFTQAGRTIET 80 (136)
T ss_dssp CEEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECCTTSSCCCCSCCEEEEEEEETTCCHHH
T ss_pred CEEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccccccCcCCCCCeEEEEEEECCCCCHHH
Confidence 899999999999999999999999999999999999544 445667788555 3 57999999999998899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeeh
Q 033334 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAV 118 (121)
Q Consensus 74 ~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~ 118 (121)
|++++++|++.+ +.||+++++|+|.+.|++++|||++|+...++
T Consensus 81 K~~L~~~it~~l-~~lg~~~~~v~V~i~E~~~~~W~~ggG~aq~~ 124 (136)
T 3mlc_A 81 KQRVFAAITESL-APIGVAGSDVFIAITENAPHDWSFGFGSAQYV 124 (136)
T ss_dssp HHHHHHHHHHHH-TTTTCCGGGEEEEEEEECGGGEECBTTBCHHH
T ss_pred HHHHHHHHHHHH-HHcCCCcccEEEEEEEcCHHHeeecCcEeeec
Confidence 999999999999 99999999999999999999999999987665
No 17
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=99.87 E-value=8.9e-22 Score=133.00 Aligned_cols=115 Identities=12% Similarity=0.078 Sum_probs=101.7
Q ss_pred CCeEEEEeCCCC-CCcChHHHHHHHHHHHHHHhCCCCcEEEEEE--eCCceeeecC-CCCCeeEEEEEe--eeCCChhHH
Q 033334 1 MPCLNISTNVKL-DGVDTSSILSEATSTVANIIGKPEAYVMIVL--KGSVPMSFGG-TEDPAAYGELVS--IGGLNPDVN 74 (121)
Q Consensus 1 MP~i~i~tn~~~-~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v--~~~~~~~~gg-~~~p~~~v~i~~--~g~~~~e~~ 74 (121)
||+++|+...+. +++++++|.++++++++++ |+|..++.|.+ .+..+++.|| +.+...+++|.. ..+++.++|
T Consensus 22 MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P~~~v~V~i~e~~~~~~~~gg~~~~~~v~I~I~~~a~~gRt~eqK 100 (161)
T 3c6v_A 22 MPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLPAFYVQVHFIEQPAGTSFIGGEQHPNFVALTIYHLARTMTSDEQR 100 (161)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCCGGGCEEEEEECCTTSEEETTEECSSEEEEEEEEETTSCCSHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcChhhEEEEEEEeCccceeECCcccCCEEEEEEEeccCCCCCHHHH
Confidence 999999998884 8888999999999999999 99998766644 4678899998 456777877733 567999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceee
Q 033334 75 KKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLH 116 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~ 116 (121)
++++++|++.|.+.+|+++++++|.+.+.+++|||++|.+.-
T Consensus 101 ~~l~~~l~~~L~~~~gi~~~dv~I~I~E~~~e~Wsf~G~~~P 142 (161)
T 3c6v_A 101 QGFLKRIDAFLTPMFEPKGIDWEYFVTEAPRDLWKINGLAPP 142 (161)
T ss_dssp HHHHHHHHHHHHHHHGGGTCEEEEEEEEECGGGCEETTBCCC
T ss_pred HHHHHHHHHHHHHHcCCChhhEEEEEEEcCccceEECCCcCC
Confidence 999999999999999999999999999999999999998654
No 18
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=99.80 E-value=8.2e-19 Score=117.08 Aligned_cols=115 Identities=12% Similarity=0.174 Sum_probs=100.3
Q ss_pred eEEEEeCC-CCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEe--CCceeeecC--CCCCeeEEEEEeeeCCChhHHHHH
Q 033334 3 CLNISTNV-KLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGG--TEDPAAYGELVSIGGLNPDVNKKL 77 (121)
Q Consensus 3 ~i~i~tn~-~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~--~~~~~~~gg--~~~p~~~v~i~~~g~~~~e~~~~~ 77 (121)
+-+|+... ..+++++++|.+++++++++.+|.|.+++.|.+. +..+++.|| .+++..+|++....|++.|||+++
T Consensus 2 ~~~i~~~~~~~t~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd~~v~I~i~~~~GRt~eqK~~L 81 (149)
T 3mf7_A 2 VYMVYVSQDRLTPSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGGDTIFVHGLHREGRSADLKGQL 81 (149)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCSCCEEEEEEEESCCCHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCCCEEEEEEEecCCCCHHHHHHH
Confidence 34565554 4788889999999999999999999998887654 577889987 468899999999989999999999
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeee
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHA 117 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~ 117 (121)
+++|++.+.+.+|+++++|+|.+.++++.+|+.+|....+
T Consensus 82 ~~~I~~~l~~~~g~~~edV~V~i~e~~~~~~~~~G~~~P~ 121 (149)
T 3mf7_A 82 AQRIVDDVSVAAEIDRKHIWVYFGEMPAQQMVEYGRFLPQ 121 (149)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEEEECGGGCCCSSCC---
T ss_pred HHHHHHHHHHHcCCChhhEEEEEEEcCHHHHHhcCeeCCC
Confidence 9999999999999999999999999999999999987654
No 19
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=99.72 E-value=9.8e-18 Score=95.61 Aligned_cols=59 Identities=7% Similarity=0.195 Sum_probs=56.4
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeeh
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAV 118 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~ 118 (121)
+++|++.+|+++++|++++++|++.+.+.||+|+++++|.|++++++|||++|.+++++
T Consensus 2 ~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~~~~ 60 (61)
T 2opa_A 2 YVTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAGKRLSDM 60 (61)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEEGGGC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECCEEhhhc
Confidence 68899999999999999999999999999999999999999999999999999998764
No 20
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=99.72 E-value=1.3e-17 Score=95.39 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=56.1
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehh
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVH 119 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~ 119 (121)
+++|++.+++++++|++++++|++.+.+.||+|++++||.|.++++++||++|.+++++.
T Consensus 2 ~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G~~~~~~~ 61 (62)
T 1otf_A 2 IAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEPASKVR 61 (62)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETTEETTC--
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECCEEHHHhc
Confidence 688898999999999999999999999999999999999999999999999999998753
No 21
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=99.71 E-value=8.7e-17 Score=103.52 Aligned_cols=107 Identities=11% Similarity=0.149 Sum_probs=93.3
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHH
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
||++++ .+.+.++.+.+.+.|.+-++++++-|.+++.+.+.+. ..++.| +..-+|+|.-. ++++||+++++++
T Consensus 16 MPhlr~---rgi~~e~v~~lS~~Lid~La~i~~~~~e~fTle~i~s-~~i~~G--~~MP~VeV~~f-gRt~EqK~~la~~ 88 (122)
T 1u9d_A 16 MPHLRF---RAVEAHIVESLVPTLLNELSSLLSTARNAFTFELINT-QYFAEG--GVYPMVEVLWF-GREQQTQDQIAQV 88 (122)
T ss_dssp CCEEEE---ESSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCC-CCCCTT--CCCCEEEEEES-CCCHHHHHHHHHH
T ss_pred CceEEE---CCCCHHHHHHHhHHHHHHHHHHHCCCcccEEEEEeee-EEEecC--CCCCEEEEEEc-CCCHHHHHHHHHH
Confidence 999999 4555555788999999999999999999999988764 556777 55558888888 5999999999999
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCcee
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCL 115 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~ 115 (121)
|++.+.+. |.++++|.|.|.++++++|+.||..|
T Consensus 89 IT~av~~~-~~~~e~V~Vif~el~~~~y~~gG~~~ 122 (122)
T 1u9d_A 89 ITDQIRQL-LGADSHLAVVFIPLQRTAYYLDGQHF 122 (122)
T ss_dssp HHHHHHHH-HCTTCCCEEEEEECCGGGCEETTEEC
T ss_pred HHHHHHHh-CCCCceEEEEEEecCHHHeeeCCEEC
Confidence 99999999 89999999999999999999999753
No 22
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=99.69 E-value=3.7e-17 Score=94.04 Aligned_cols=62 Identities=11% Similarity=0.207 Sum_probs=58.2
Q ss_pred eEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehhc
Q 033334 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVHQ 120 (121)
Q Consensus 59 ~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~~ 120 (121)
.+++|++.+++++++|++++++|++.+.+.||+|+++++|.|.+++++|||++|.+++++++
T Consensus 2 P~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~~~~~~ 63 (64)
T 3abf_A 2 VVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGVLFSDKEG 63 (64)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTEEHHHHTC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEhHhhcC
Confidence 37889988899999999999999999999999999999999999999999999999987653
No 23
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=99.69 E-value=6.3e-17 Score=94.23 Aligned_cols=61 Identities=13% Similarity=0.242 Sum_probs=58.0
Q ss_pred EEEEEeee---CCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehhc
Q 033334 60 YGELVSIG---GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVHQ 120 (121)
Q Consensus 60 ~v~i~~~g---~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~~ 120 (121)
||+|+..+ ++++++|++++++|++.+.+.||+|+++++|.|+++++++||++|.++++++.
T Consensus 2 ~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e~~~ 65 (67)
T 3m21_A 2 FINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQ 65 (67)
T ss_dssp EEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTEEHHHHHC
T ss_pred EEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEEHHHHhc
Confidence 68899887 89999999999999999999999999999999999999999999999998764
No 24
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=99.66 E-value=1.8e-16 Score=90.96 Aligned_cols=59 Identities=7% Similarity=0.062 Sum_probs=55.3
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehh
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVH 119 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~ 119 (121)
+|+|+. +++++|||++++++|++.+.+.||+|+++++|.|++++++|||++|.+++++.
T Consensus 2 ~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~~~~~~~ 60 (62)
T 3m20_A 2 VLIVYG-PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGKLIADRE 60 (62)
T ss_dssp EEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTEETTCC-
T ss_pred EEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCEEhhhhc
Confidence 578888 88999999999999999999999999999999999999999999999998753
No 25
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=99.66 E-value=2.3e-16 Score=93.09 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=56.8
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehhc
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVHQ 120 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~~ 120 (121)
+|+|+...++++|+|++++++|++.+.+.||+|+++++|.|.+++++|||++|.+.++++.
T Consensus 3 ~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e~r~ 63 (72)
T 3mb2_A 3 LLRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGISMAELRQ 63 (72)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEETTCC--
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEHHHHHh
Confidence 6788888889999999999999999999999999999999999999999999999999764
No 26
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=99.64 E-value=3.3e-16 Score=90.61 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=57.3
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehhc
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVHQ 120 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~~ 120 (121)
+|+|+...|+++++|++++++|++.+.+.||+|+++++|.|.+++++|||++|.++++.+.
T Consensus 2 ~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e~~~ 62 (65)
T 3ry0_A 2 LIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRSVAERRA 62 (65)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEEHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEHHHhhh
Confidence 6788888889999999999999999999999999999999999999999999999887653
No 27
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=99.62 E-value=9.5e-16 Score=87.44 Aligned_cols=59 Identities=10% Similarity=0.104 Sum_probs=56.1
Q ss_pred eEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeee
Q 033334 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHA 117 (121)
Q Consensus 59 ~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~ 117 (121)
.+++|+..++++++++++++++|++.+.+.||+|+++++|.|.++++++||++|.++++
T Consensus 4 P~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G~~~~~ 62 (63)
T 2x4k_A 4 PIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAGVRKSD 62 (63)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEETTC
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEcCc
Confidence 47888988999999999999999999999999999999999999999999999999875
No 28
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=99.61 E-value=1.4e-15 Score=90.68 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=56.8
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeehh
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAVH 119 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~~ 119 (121)
+|+|+...|+++|++++++++|++.+.+.||+|+++++|.|++++++|||++|.++++..
T Consensus 3 ~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~~~~w~~gG~~~~e~~ 62 (76)
T 3ej9_A 3 MISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVQHGEHLPDYV 62 (76)
T ss_dssp EEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETTEECCCCC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEEccccc
Confidence 678888888999999999999999999999999999999999999999999999998764
No 29
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=99.50 E-value=3.6e-13 Score=89.37 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=96.2
Q ss_pred CCeEEEEeCCCCC-CcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCC--CCCeeEEEEEeeeCCChhHHHHH
Q 033334 1 MPCLNISTNVKLD-GVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT--EDPAAYGELVSIGGLNPDVNKKL 77 (121)
Q Consensus 1 MP~i~i~tn~~~~-~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~--~~p~~~v~i~~~g~~~~e~~~~~ 77 (121)
||.+.|..+.... ..+.++|++.+.+++.+...-|+.-|-+...+...+..|+. ++..+.|+|+...||++|+|+++
T Consensus 22 MPHi~IEYS~nl~~~~d~~~l~~~vh~al~~~g~fp~~diK~Ra~~~~~y~vg~~~~~~~FVhV~i~ll~GRt~EqK~~L 101 (146)
T 3e6q_A 22 MPHLVIEATANLRLETSPGELLEQANAALFASGQFGEADIKSRFVTLEAYRQGTAAVERAYLHACLSILDGRDAATRQAL 101 (146)
T ss_dssp CCEEEEEEETTCEESSCHHHHHHHHHHHHHHTTSSCGGGCEEEEEEESSEEESSSSCCCCEEEEEEEEETTCCHHHHHHH
T ss_pred CCeEEEEECCCcccccCHHHHHHHHHHHHHhcCCCCccCeeEEEEEccceEEcCCCCCccEEEEEEEECCCCCHHHHHHH
Confidence 9999998888865 56688999999999999766788888887777677777753 36788888889999999999999
Q ss_pred HHHHHHHHHHHhCCCC---CeEEEEEEeCCCCCceeC
Q 033334 78 SAAISAILEKKLSVPK---SRFFIKFYDTKAHQSREH 111 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~---~ri~i~f~~~~~~~~g~~ 111 (121)
+++|++.+.+.++-++ ..+.|.+.|+++++|..+
T Consensus 102 ~e~v~~al~~~l~~~~~~~~~lsVeI~E~~~~~y~k~ 138 (146)
T 3e6q_A 102 GESLCEVLAGAVAGGGEEGVQVSVEVREMERASYAKR 138 (146)
T ss_dssp HHHHHHHHHHHEEECSSSCEEEEEEEEEECGGGCEEE
T ss_pred HHHHHHHHHHHhCCccCCceEEEEEEEECCcccccee
Confidence 9999999999999876 499999999999999875
No 30
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=99.42 E-value=1.4e-12 Score=84.40 Aligned_cols=110 Identities=8% Similarity=0.063 Sum_probs=93.8
Q ss_pred CeEEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecC-CCC-CeeEEEEEeeeCCChhHHHHHH
Q 033334 2 PCLNISTNVKLDG-VDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGG-TED-PAAYGELVSIGGLNPDVNKKLS 78 (121)
Q Consensus 2 P~i~i~tn~~~~~-~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg-~~~-p~~~v~i~~~g~~~~e~~~~~~ 78 (121)
|.+.|..+....+ .+..+|++.+.+++.+...-|+.-+.+...+..++..|+ .++ ...+|+|+...|++.|+|++++
T Consensus 1 PH~~ieyS~nl~~~~~~~~L~~~lh~~l~~~~~fp~~~ik~Ra~~~~~~~vg~~~~~~~fvhi~i~i~~GRs~eqK~~L~ 80 (125)
T 1otg_A 1 PHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRVHWVDTWQMADGQHDYAFVHMTLKIGAGRSLESRQQAG 80 (125)
T ss_dssp CEEEEEEEGGGHHHHTHHHHHHHHHHHHHTTSSSCGGGCEEEEEEESSEEETTSCSCEEEEEEEEEECTTCCHHHHHHHH
T ss_pred CeEEEEeCCCcccccCHHHHHHHHHHHHHHcCCCCCcCceEeeEEcccEEEcCCCCCcceEEEEEEECCCCCHHHHHHHH
Confidence 7788877777653 468899999999999998889988888776667777775 444 5778888888899999999999
Q ss_pred HHHHHHHHHHh----CCCCCeEEEEEEeCCCC-CceeC
Q 033334 79 AAISAILEKKL----SVPKSRFFIKFYDTKAH-QSREH 111 (121)
Q Consensus 79 ~~i~~~l~~~l----gi~~~ri~i~f~~~~~~-~~g~~ 111 (121)
++|++.+.+.| |.++..+.|.+.|++++ +|+.+
T Consensus 81 ~~v~~~l~~~l~~~~~~~~~~vsv~i~E~~~~~~~~~~ 118 (125)
T 1otg_A 81 EMLFELIKTHFAALMESRLLALSFEIEELHPTLNFKQN 118 (125)
T ss_dssp HHHHHHHHHHTHHHHTTSEEEEEEEEEECCSSSEEEEE
T ss_pred HHHHHHHHHHhhhhcCCCceEEEEEEEEcCCccCHHHh
Confidence 99999999997 66999999999999999 99875
No 31
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=99.36 E-value=1.7e-12 Score=74.41 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=53.7
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceee
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLH 116 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~ 116 (121)
++++..+.|++.|||+++.+++++...+.||.|++.|.|.++|++.+|||.+|..-.
T Consensus 2 i~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap~esVrVlItE~p~en~gi~G~~~~ 58 (70)
T 3ej9_B 2 FIECHIATGLSVARKQQLIRDVIDVTNKSIGSDPKIINVLLVEHAEANMSISGRIHG 58 (70)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEESTTCCTT
T ss_pred eeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCChHHEEEEeeeCChhhceeeeeEcc
Confidence 578888999999999999999999999999999999999999999999999997644
No 32
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=99.34 E-value=1.2e-12 Score=77.75 Aligned_cols=51 Identities=12% Similarity=0.143 Sum_probs=48.3
Q ss_pred EEEEEeeeCC-ChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCcee
Q 033334 60 YGELVSIGGL-NPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSRE 110 (121)
Q Consensus 60 ~v~i~~~g~~-~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~ 110 (121)
+|+|+...|+ ++++|++++++|++.+.+.||+++++++|.|.++++++||+
T Consensus 2 ~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~ 53 (76)
T 1gyx_A 2 HIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA 53 (76)
T ss_dssp EEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE
Confidence 5788877777 99999999999999999999999999999999999999997
No 33
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=99.31 E-value=1.4e-12 Score=74.61 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=50.3
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCC--ceeeecCCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~--~~~~~gg~~ 55 (121)
||+++|+++.+.+++++++|.+++++++++.+|+|+++++|.+.+. .+|.|||.+
T Consensus 1 MP~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 57 (64)
T 3abf_A 1 MVVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGVL 57 (64)
T ss_dssp CEEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 9999999999999888999999999999999999999999998754 469999854
No 34
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=99.17 E-value=3.6e-11 Score=68.10 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=49.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEe--CCceeeecCCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~--~~~~~~~gg~~ 55 (121)
||+++|+++.+.+++++++|.+++++++++.+|+|+++++|.+. +..+|.+||.+
T Consensus 3 MP~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G~~ 59 (63)
T 2x4k_A 3 MPIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAGVR 59 (63)
T ss_dssp CCEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEE
Confidence 99999999999988889999999999999999999998888775 45789999854
No 35
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=99.10 E-value=1.1e-10 Score=68.47 Aligned_cols=55 Identities=16% Similarity=0.202 Sum_probs=50.2
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEe--CCceeeecCCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~--~~~~~~~gg~~ 55 (121)
||+++|++..+.+.+++++|.+++++++++.+|+|.+.++|.+. +..+|.+||.+
T Consensus 1 MP~I~I~~~~grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 57 (72)
T 3mb2_A 1 MLLLRITMLEGRSTEQKAELARALSAAAAAAFDVPLAEVRLIIQEVPPTHWTVGGIS 57 (72)
T ss_dssp CEEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 99999999999999999999999999999999999998888775 46899999954
No 36
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=98.95 E-value=1.9e-09 Score=63.83 Aligned_cols=55 Identities=11% Similarity=0.264 Sum_probs=48.0
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEE--eCCceeeecCCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVL--KGSVPMSFGGTE 55 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v--~~~~~~~~gg~~ 55 (121)
||+++|++..+.+.+++++|.+.+++++++.+|.|.+.++|.+ .+..+|.+||..
T Consensus 1 MP~I~I~~~~Grs~eqK~~L~~~it~~l~~~lg~p~~~v~V~i~E~~~~~w~~gG~~ 57 (76)
T 3ej9_A 1 MPMISCDMRYGRTDEQKRALSAGLLRVISEATGEPRENIFFVIREGSGINFVQHGEH 57 (76)
T ss_dssp -CEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEEETTEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEE
Confidence 9999999999999999999999999999999999998666655 567899999953
No 37
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=98.85 E-value=5.3e-09 Score=69.11 Aligned_cols=58 Identities=14% Similarity=0.049 Sum_probs=53.0
Q ss_pred EEEEEeeeCC-ChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeee
Q 033334 60 YGELVSIGGL-NPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHA 117 (121)
Q Consensus 60 ~v~i~~~g~~-~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~ 117 (121)
.++|+...|+ +++++++++++|++.+.+.+|+|++++++.|+++++++|+++|...++
T Consensus 2 ~~~I~~~~g~~s~e~k~~L~~~it~al~~~lg~p~~~v~V~i~e~~~~~~~~gG~~~s~ 60 (148)
T 3n4h_A 2 TYTCWSQRIRISREAKQRIAEAITDAHHELAHAPKYLVQVIFNEVEPDSYFIAAQSASE 60 (148)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGCEETTEECCT
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEEChHHeEECCEEccC
Confidence 4678877775 999999999999999999999999999999999999999999987654
No 38
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=98.77 E-value=1.5e-08 Score=57.53 Aligned_cols=53 Identities=25% Similarity=0.330 Sum_probs=47.6
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeC--CceeeecCCC
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGTE 55 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~--~~~~~~gg~~ 55 (121)
|+++|++ .+.+.+++++|.+++++++++.+|+|.+.++|.+.+ ..+|.+||..
T Consensus 1 P~I~I~~-~grt~eqK~~L~~~it~~~~~~lg~~~~~v~V~i~E~~~~~w~~gG~~ 55 (62)
T 3m20_A 1 PVLIVYG-PKLDVGKKREFVERLTSVAAEIYGMDRSAITILIHEPPAENVGVGGKL 55 (62)
T ss_dssp CEEEEEC-SCCCHHHHHHHHHHHHHHHHHHHTCCTTSCEEEEECCCGGGEEETTEE
T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeCHHHeEECCEE
Confidence 8999999 889999999999999999999999999988887764 5799999853
No 39
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=98.75 E-value=3.9e-08 Score=63.62 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=49.4
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCC
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHA 112 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G 112 (121)
++.|....++++++++++.+++++.+.+.+|.|++++|+.|+++++++|+++|
T Consensus 3 ~i~I~~~~~~~~e~k~~l~~~i~~al~~~~g~p~~~~~v~i~~~~~~~~~~~g 55 (131)
T 2aal_A 3 LLKFDLFYGRTDAQIKSLLDAAHGAMVDAFGVPANDRYQTVSQHRPGEMVLED 55 (131)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECTTSEEECC
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEECHHHcccCC
Confidence 46666667799999999999999999999999999999999999999999998
No 40
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=98.72 E-value=2.8e-08 Score=64.99 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=49.5
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCC
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHA 112 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G 112 (121)
+++|....|++++++++++++|++.+.+.+|+|++++++.|+++++++|.+++
T Consensus 2 ~v~I~l~~Grs~e~k~~L~~~it~al~e~~~vP~~dv~vii~e~~~~~~~~~~ 54 (136)
T 3mlc_A 2 LIRIDLTSDRSREQRRAIADAVHDALVEVLAIPARDRFQILTAHDPSDIIAED 54 (136)
T ss_dssp EEEEEEETTSCSHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEEECGGGEEECC
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCcChhHEEEEEEEcCHHHccccc
Confidence 57788888899999999999999999999999999999999999999997764
No 41
>3c6v_A Probable tautomerase/dehalogenase AU4130; aspergillus fumigatus trimeric thermophilic probable tautomerase/dehalogenase; HET: MSE; 1.90A {Aspergillus fumigatus AF293}
Probab=98.69 E-value=4.6e-08 Score=65.70 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=52.9
Q ss_pred CeeEEEEEeeeC-CChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceee
Q 033334 57 PAAYGELVSIGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLH 116 (121)
Q Consensus 57 p~~~v~i~~~g~-~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~ 116 (121)
.--+++|....| +++|++++++++|++.+.+. |+|++.+.|.|+++++++|+.+|...+
T Consensus 21 ~MP~v~I~~~~G~~t~eqk~~L~~~It~alve~-g~P~~~v~V~i~e~~~~~~~~gg~~~~ 80 (161)
T 3c6v_A 21 GMPRWLIQHSPNTLTPEEKSHLAQQITQAYVGF-GLPAFYVQVHFIEQPAGTSFIGGEQHP 80 (161)
T ss_dssp SCCEEEEEECTTSSCHHHHHHHHHHHHHHHHHT-TCCGGGCEEEEEECCTTSEEETTEECS
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHHHHHh-CcChhhEEEEEEEeCccceeECCcccC
Confidence 355777877777 49999999999999999999 999999999999999999999998754
No 42
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=98.68 E-value=7e-08 Score=55.40 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=41.2
Q ss_pred EEEEeee--CCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCC
Q 033334 61 GELVSIG--GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQ 107 (121)
Q Consensus 61 v~i~~~g--~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~ 107 (121)
.++...| .++.|||+++++++++.+.+.||-+|+++.|.|.+++++|
T Consensus 3 lev~~~~~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi~EV~~en 51 (72)
T 3mb2_B 3 LEVFYSGDRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLIIQIVSPEN 51 (72)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEEEECCGGG
T ss_pred eEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCccc
Confidence 4454444 3789999999999999999999999999999999999876
No 43
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=98.67 E-value=5.5e-08 Score=55.51 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=47.8
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEE--eCCceeeecCCC
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVL--KGSVPMSFGGTE 55 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v--~~~~~~~~gg~~ 55 (121)
|+++|++..+.+.+++++|.+.+++++++.+|+|.+.+.|.+ .+..+|.+||..
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 56 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRS 56 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEE
Confidence 899999999999999999999999999999999999666655 567899999953
No 44
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=98.66 E-value=7.5e-08 Score=55.30 Aligned_cols=54 Identities=15% Similarity=0.348 Sum_probs=47.8
Q ss_pred CeEEEEeCC---CCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEe--CCceeeecCCC
Q 033334 2 PCLNISTNV---KLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (121)
Q Consensus 2 P~i~i~tn~---~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~--~~~~~~~gg~~ 55 (121)
|+++|++.. +.+.+++++|.+.+++++++.+|+|.+.++|.+. +..+|.+||.+
T Consensus 1 P~i~I~~~~~~~grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~ 59 (67)
T 3m21_A 1 PFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGES 59 (67)
T ss_dssp CEEEEEECCBTTBSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTEE
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEE
Confidence 999999998 8999999999999999999999999997776664 56899999853
No 45
>3mf7_A CIS-3-chloroacrylic acid dehalogenase; beta-alpha-beta motif, tautomerase, CIS-3-CHLO acid dehalogenase, isomerase, hydrolase; HET: PR4; 1.65A {Coryneform bacterium} PDB: 3mf8_A 2flt_A 2flz_A
Probab=98.63 E-value=6.4e-08 Score=64.20 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=49.9
Q ss_pred EEEee-eCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeee
Q 033334 62 ELVSI-GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHA 117 (121)
Q Consensus 62 ~i~~~-g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~ 117 (121)
.|... |.+++++|++++++|++.+.+.+|+|+++++|.|+++++++|+.+|...++
T Consensus 4 ~i~~~~~~~t~eqK~aLa~~It~a~~e~~~vP~~~v~Vif~e~~~~~~~~gG~~rsd 60 (149)
T 3mf7_A 4 MVYVSQDRLTPSAKHAVAKAITDAHRGLTGTQHFLAQVNFQEQPAGNVFLGGVQQGG 60 (149)
T ss_dssp EEEEETTTSCHHHHHHHHHHHHHHHHHTCCTTCCCCEEEEEEECTTCCEETTEECCS
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEcCccceEECCEEcCC
Confidence 44444 569999999999999999999999999999999999999999998876653
No 46
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=98.56 E-value=1.8e-07 Score=52.40 Aligned_cols=54 Identities=11% Similarity=0.246 Sum_probs=47.4
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEe--CCceeeecCCC
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~--~~~~~~~gg~~ 55 (121)
|+++|+...+.+.+++++|.+.+++++++.+|.|.+.++|.+. +..+|.+||..
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 56 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAGKR 56 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECCEE
Confidence 8999999888888989999999999999999999997777664 56789999853
No 47
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=98.55 E-value=2.3e-07 Score=52.04 Aligned_cols=54 Identities=13% Similarity=0.242 Sum_probs=47.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEE--eCCceeeecCCC
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVL--KGSVPMSFGGTE 55 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v--~~~~~~~~gg~~ 55 (121)
|+++|+...+.+.+++++|.+.+++++++.+|.|.+.++|.+ .+..+|.+||.+
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G~~ 56 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEP 56 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETTEE
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECCEE
Confidence 899999888888898999999999999999999999766665 466789999854
No 48
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=98.49 E-value=7.6e-08 Score=61.93 Aligned_cols=52 Identities=17% Similarity=0.150 Sum_probs=49.3
Q ss_pred EEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCC
Q 033334 61 GELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHA 112 (121)
Q Consensus 61 v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G 112 (121)
++|....|+++++++++.+++++.+.+.+|.|++++|+.+.++++++|.++|
T Consensus 2 v~I~~~~g~s~e~~~~l~~~i~~al~~~lg~p~~~~~v~i~~~~~~~~~~gg 53 (128)
T 1mww_A 2 ITVFGLKSKLAPRREKLAEVIYNSLHLGLDIPKGKHAIRFLCLEKEDFYYPF 53 (128)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCTTSSCEEEEEECGGGEECCT
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHHHHHCcChHHEEEEEEEeChHHeecCC
Confidence 5677777899999999999999999999999999999999999999999998
No 49
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=98.44 E-value=6.5e-07 Score=51.23 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=48.2
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCc--EEEEEEeCCceeeecCC
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEA--YVMIVLKGSVPMSFGGT 54 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~--~i~v~v~~~~~~~~gg~ 54 (121)
|+++++.-.+.+.+|+++|.+++++++++.+|.|.+ +|+++-.+.++|..||.
T Consensus 1 Pi~qi~i~EGRT~EQK~~lI~~VT~a~~eslgap~esVrVlItE~p~en~gi~G~ 55 (70)
T 3ej9_B 1 PFIECHIATGLSVARKQQLIRDVIDVTNKSIGSDPKIINVLLVEHAEANMSISGR 55 (70)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGEESTTC
T ss_pred CeeEEEEecCCCHHHHHHHHHHHHHHHHHHcCCChHHEEEEeeeCChhhceeeee
Confidence 899999999999999999999999999999999998 55555678999999985
No 50
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=98.21 E-value=2.7e-06 Score=54.44 Aligned_cols=55 Identities=13% Similarity=0.205 Sum_probs=43.4
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeC--CceeeecCCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGTE 55 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~--~~~~~~gg~~ 55 (121)
||+++|+...+.+.+++++|.+.+++++.+.+|.|.+.++|.+.+ ..+|.+||..
T Consensus 57 ~~~v~I~~~~g~t~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~ 113 (125)
T 2wkb_A 57 YCFVRLTSIGGINRSNNSLLADKITKILSNHLSVKPRRVYIEFRDCSAQNFAFSGSL 113 (125)
T ss_dssp CEEEEEECC-----CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC----CEEEEGGG
T ss_pred cEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeEECCEE
Confidence 688999987778889999999999999999999999999988865 4589999864
No 51
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=98.12 E-value=5.1e-06 Score=52.07 Aligned_cols=54 Identities=11% Similarity=0.248 Sum_probs=47.5
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT 54 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~ 54 (121)
|++++|+...+.+.+++++|.+.+++++.+.+|.|.+.++|.+.+..+|.+||+
T Consensus 57 ~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~wg~~G~ 110 (112)
T 3b64_A 57 VACVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPLHCGWNGT 110 (112)
T ss_dssp CEEEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECCSCCEETTE
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEhhHeeECCE
Confidence 467888877668888899999999999999999999999999987668999985
No 52
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=98.07 E-value=1e-05 Score=50.89 Aligned_cols=52 Identities=12% Similarity=0.031 Sum_probs=45.7
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCce
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQC 114 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~ 114 (121)
+++|+...+++++ ++++.+++++.+.+.||.|++.++|.+++ +.+|.++|++
T Consensus 3 ~i~i~~~~~~~~~-~~~l~~~~~~~l~~~lgkp~~~~~v~~~~--~~~~~~~g~~ 54 (115)
T 2xcz_A 3 LINIQASVPAVAD-ANSLLQELSSKLAELLGKPEKYVMTSLQC--GVPMTFSGNT 54 (115)
T ss_dssp EEEEEESSCCCTT-HHHHHHHHHHHHHHHHTCCGGGCEEEEEC--SCCCCBTTBC
T ss_pred EEEEEecCCCchh-HHHHHHHHHHHHHHHHCCChHHEEEEEEC--CCceEECCCC
Confidence 5667766678999 99999999999999999999999998874 6899999975
No 53
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=98.06 E-value=4.8e-06 Score=52.16 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=46.9
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeC--CceeeecCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGT 54 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~--~~~~~~gg~ 54 (121)
|++++|+...+.+.+++++|.+.+++++.+.+|.|.+.+.|.+.+ ..+|.+||+
T Consensus 56 ~~~i~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~ 111 (113)
T 1hfo_A 56 AAFGTLMSIGGIEPSRNRDHSAKLFDHLNTKLGIPKNRMYIHFVNLNGDDVGWNGT 111 (113)
T ss_dssp CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEECCHHHeeeCCE
Confidence 567888887778888899999999999999999999988888764 458999985
No 54
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=97.98 E-value=7.3e-06 Score=48.00 Aligned_cols=44 Identities=14% Similarity=0.293 Sum_probs=39.9
Q ss_pred CeEEEEeCCCC-CCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeC
Q 033334 2 PCLNISTNVKL-DGVDTSSILSEATSTVANIIGKPEAYVMIVLKG 45 (121)
Q Consensus 2 P~i~i~tn~~~-~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~ 45 (121)
|+++|++..+. +.+++++|.+++++++++.+|.|.+.++|.+.+
T Consensus 1 P~I~I~l~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~V~i~e 45 (76)
T 1gyx_A 1 PHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIALQQ 45 (76)
T ss_dssp CEEEEEESCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEEEEEEE
Confidence 89999998887 889899999999999999999999988877754
No 55
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=97.98 E-value=8.5e-06 Score=51.20 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=46.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeC--CceeeecCCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGTE 55 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~--~~~~~~gg~~ 55 (121)
+++++|+...+.+.+++++|.+.+++++.+.+|.|.+.+.|.+.+ ..+|.+||.+
T Consensus 57 ~~~v~i~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~t 113 (115)
T 1uiz_A 57 CAVCSLCSIGKIGGPQNKSYTKLLCDILTKQLNIPANRVYINYYDLNAANVGWNGST 113 (115)
T ss_dssp CEEEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTEE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeeeCCEE
Confidence 457888877778888899999999999999999999988888764 4589999853
No 56
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=97.89 E-value=2e-05 Score=49.88 Aligned_cols=55 Identities=16% Similarity=0.254 Sum_probs=46.9
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeC--CceeeecCCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGTE 55 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~--~~~~~~gg~~ 55 (121)
+++++|+...+.+.+++++|.+.+++++.+.+|.|.+.+.|.+.+ ..+|.+||.+
T Consensus 57 ~~~i~I~~~~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~ 113 (119)
T 2os5_A 57 VAVIKVESIGALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFDLQPIHVGFNGTT 113 (119)
T ss_dssp CEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEE
T ss_pred eEEEEEEEecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECCHHHeeECCEE
Confidence 457888877778888899999999999999999999988888764 4589999853
No 57
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=97.66 E-value=0.00012 Score=46.79 Aligned_cols=52 Identities=10% Similarity=0.131 Sum_probs=43.3
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEE--eCCceeeecCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVL--KGSVPMSFGGT 54 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v--~~~~~~~~gg~ 54 (121)
||+++|..- +.++++++++.+.++++++++ +.|.+.+.|.+ .+..+++.||.
T Consensus 67 MP~VeV~~f-gRt~EqK~~la~~IT~av~~~-~~~~e~V~Vif~el~~~~y~~gG~ 120 (122)
T 1u9d_A 67 YPMVEVLWF-GREQQTQDQIAQVITDQIRQL-LGADSHLAVVFIPLQRTAYYLDGQ 120 (122)
T ss_dssp CCEEEEEES-CCCHHHHHHHHHHHHHHHHHH-HCTTCCCEEEEEECCGGGCEETTE
T ss_pred CCEEEEEEc-CCCHHHHHHHHHHHHHHHHHh-CCCCceEEEEEEecCHHHeeeCCE
Confidence 999999999 789999999999999999999 67766555544 56678888874
No 58
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=97.53 E-value=0.00017 Score=46.71 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=33.6
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCC--ceeeecCCC
Q 033334 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (121)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~--~~~~~gg~~ 55 (121)
+++|+..-+.++++++++.+.+++++.+.+|.|.+++.|.+.+- .+|.++|++
T Consensus 80 ~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~nG~T 134 (135)
T 3t5s_A 80 FVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYISFNEAKGHNWGFNGST 134 (135)
T ss_dssp EEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGEEEEEEC------------
T ss_pred EEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEEEEEeccccCcccccCCCc
Confidence 45667666678888999999999999999999999999998764 888888864
No 59
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=97.45 E-value=0.00027 Score=45.72 Aligned_cols=52 Identities=12% Similarity=0.245 Sum_probs=45.3
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCC
Q 033334 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT 54 (121)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~ 54 (121)
+++|+..-..+.++.+++.+.+++.+.+.+|.|.+++.|.+.+-.+|.++|+
T Consensus 80 ~v~i~sig~~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~d~~~wG~nG~ 131 (133)
T 3fwu_A 80 CVRVEALGGYGPSEPEKVTSIVTAAITKECGIVADRIFVLYFSPLHCGWNGT 131 (133)
T ss_dssp EEEEECTTCCCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEECCSCCEETTE
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEEHHHEeeCcE
Confidence 4566766667777789999999999999999999999999988889988885
No 60
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=97.32 E-value=0.0002 Score=44.87 Aligned_cols=52 Identities=8% Similarity=0.220 Sum_probs=43.8
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeC--CceeeecCC
Q 033334 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKG--SVPMSFGGT 54 (121)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~--~~~~~~gg~ 54 (121)
+++|+.--..+.++++++.+.+++++.+.+|+|.+++.|.+.+ ..+|.++|+
T Consensus 59 ~v~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~~G~ 112 (114)
T 4dh4_A 59 FIRVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYTTFTNKSPSEWAMGDR 112 (114)
T ss_dssp EEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGCEETTE
T ss_pred EEEEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEeCCHHHeEECCE
Confidence 5566666667778889999999999999999999988888764 588888885
No 61
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=97.23 E-value=0.0013 Score=42.37 Aligned_cols=57 Identities=18% Similarity=0.190 Sum_probs=49.2
Q ss_pred CCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCce
Q 033334 56 DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQC 114 (121)
Q Consensus 56 ~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~ 114 (121)
.|--+++|+..-+.++++++++.+++++.+.+.+|.|.+.++|.+++ ...|-|+|+.
T Consensus 19 ~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~~v~V~~~~--~~~m~fgGs~ 75 (133)
T 3fwt_A 19 SHMPFLQTIVSVSLDDQKRANLSAAYGMICREELGKPEDFVMTAFSD--KTPISFQGST 75 (133)
T ss_dssp EEEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHSCTTCCCEEEEEC--SCCCCBTTBC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHhCcCcCEEEEEEEC--CceEEECCCC
Confidence 45667778777778888999999999999999999999999998886 5789999864
No 62
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=97.03 E-value=0.00099 Score=41.65 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=43.4
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCC--ceeeecCCC
Q 033334 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS--VPMSFGGTE 55 (121)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~--~~~~~gg~~ 55 (121)
+++|+.--..++++.+++.+.+++++.+.||.|.+++.|.+.+- .+|-++|++
T Consensus 58 ~~~v~sig~~~~~~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~~~~~~g~~G~t 112 (114)
T 3djh_A 58 LCSLHSIGKIGGAQNRSYSKLLCGLLAERLRISPDRVYINYYDMNAANVGWNNST 112 (114)
T ss_dssp EEEEEESSCCSHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGEEETTEE
T ss_pred EEEEEEccCCCHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEECCHHHeeECCEE
Confidence 45666665566677889999999999999999999999988654 888888853
No 63
>3mb2_B 4-oxalocrotonate tautomerase family enzyme - beta; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=96.82 E-value=0.002 Score=36.88 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=34.3
Q ss_pred CeEEEEeCCC--CCCcChHHHHHHHHHHHHHHhCCCCcEEEEEE
Q 033334 2 PCLNISTNVK--LDGVDTSSILSEATSTVANIIGKPEAYVMIVL 43 (121)
Q Consensus 2 P~i~i~tn~~--~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v 43 (121)
|++++...-. .+.+|+.+|.+++++++++++|.|.+++-|-+
T Consensus 1 p~lev~~~~~~pRT~EQKralaeE~T~if~evLGcpPgsV~IVi 44 (72)
T 3mb2_B 1 PMLEVFYSGDRPPDRTRKQAFAAEASAIFQRVIGTPPGRLQLII 44 (72)
T ss_dssp CEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHHCCCTTCCEEEE
T ss_pred CceEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCcEEEEE
Confidence 6777766654 66788999999999999999999888666554
No 64
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=95.75 E-value=0.018 Score=36.09 Aligned_cols=52 Identities=17% Similarity=0.059 Sum_probs=39.1
Q ss_pred EEEEeCCCCCC-cChHHHHHHHHHHHHHHhCCCCcEEEEEEe--CCceeeecCCC
Q 033334 4 LNISTNVKLDG-VDTSSILSEATSTVANIIGKPEAYVMIVLK--GSVPMSFGGTE 55 (121)
Q Consensus 4 i~i~tn~~~~~-~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~--~~~~~~~gg~~ 55 (121)
++|+.--...+ ++.+++.+.+++++.+.||.|.+++.|.+. ++.++-++|++
T Consensus 59 ~~v~siG~~~~~~~n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d~~~~~~G~nG~t 113 (117)
T 3kan_A 59 LSISSIGVVGTAEDNRSHSAHFFEFLTKELALGQDRILIRFFPLESWQIGKIGTV 113 (117)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEEECGGGCEETTEE
T ss_pred EEEEEecCCCcHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeeCCEE
Confidence 45554444444 457899999999999999999999999875 45666777753
No 65
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=95.58 E-value=0.0072 Score=38.44 Aligned_cols=45 Identities=0% Similarity=-0.133 Sum_probs=39.3
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHh----CCCCcEEEEEEeC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANII----GKPEAYVMIVLKG 45 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~----~kp~~~i~v~v~~ 45 (121)
||.++|+.-.+.+.++++++.+.+.+++++.+ +.+...+.|.+.+
T Consensus 60 fvhi~i~i~~GRs~eqK~~L~~~v~~~l~~~l~~~~~~~~~~vsv~i~E 108 (125)
T 1otg_A 60 FVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIEE 108 (125)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHHTHHHHTTSEEEEEEEEEE
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEEEEE
Confidence 68899999999999999999999999999987 5588888887764
No 66
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=91.10 E-value=0.69 Score=28.60 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=36.9
Q ss_pred EEEEEEeCCce-eeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 38 YVMIVLKGSVP-MSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 38 ~i~v~v~~~~~-~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
.+.|.+.|+.. -...|-.+...-|.|+.. -..-+-.++++++|.+.||+++.+|.|.
T Consensus 16 ~l~v~V~P~A~r~~I~g~~~~~LkV~v~Ap-----P~dGkAN~ali~~LAk~l~V~ks~V~Iv 73 (108)
T 1n91_A 16 VLRLYIQPKASRDSIVGLHGDEVKVAITAP-----PVDGQANSHLVKFLGKQFRVAKSQVVIE 73 (108)
T ss_dssp EEEEEEECSSSSCEEEEECSSCEEEECCCC-----SSHHHHHHHHHHHHHHHTCCCTTTEEES
T ss_pred EEEEEEeeCCCcceeecccCCEEEEEEecC-----CCCChHHHHHHHHHHHHhCCccceEEEE
Confidence 45566777532 333444455555555443 2334566778999999999999998875
No 67
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=87.44 E-value=2 Score=28.57 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHh----CCCCcEEEEEEeCCceeeecC-CCCCeeEEEEEeeeCC-ChhHHHHHHHHHHHHHHHH-hCC
Q 033334 19 SILSEATSTVANII----GKPEAYVMIVLKGSVPMSFGG-TEDPAAYGELVSIGGL-NPDVNKKLSAAISAILEKK-LSV 91 (121)
Q Consensus 19 ~~~~~l~~~~~~~~----~kp~~~i~v~v~~~~~~~~gg-~~~p~~~v~i~~~g~~-~~e~~~~~~~~i~~~l~~~-lgi 91 (121)
.+...+.+-++..+ |.-..++.+.+... .-.|.. ...|.|-|-|+..++. ++++ ..+|..++... -|+
T Consensus 84 ~~~rale~ELartI~~i~gV~~ArVhl~lP~~-~~~f~~~~~~~sASV~l~~~~g~l~~~q----v~~I~~LVa~SV~gL 158 (170)
T 2y9j_Y 84 RLYSAIEQRLEQSLQTMEGVLSARVHISYDID-AGENGRPPKPVHLSALAVYERGSPLAHQ----ISDIKRFLKNSFADV 158 (170)
T ss_dssp HHHHHHHHHHHHHHTTSTTEEEEEEEEEECCC-CCBTTBCCCCEEEEEEEEECTTCCCGGG----HHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHcCCCeeEEEEEEEcCCC-cCcccccCCCCcEEEEEEECCCCCCHHH----HHHHHHHHHHhcCCC
Confidence 44444444444444 44334555544432 133433 4578888888876663 3444 56677777655 489
Q ss_pred CCCeEEEEEEe
Q 033334 92 PKSRFFIKFYD 102 (121)
Q Consensus 92 ~~~ri~i~f~~ 102 (121)
++++|.|.+.+
T Consensus 159 ~~e~VtVv~~~ 169 (170)
T 2y9j_Y 159 DYDNISVVLSE 169 (170)
T ss_dssp CGGGEEEEEEE
T ss_pred CccceEEEEec
Confidence 99999998864
No 68
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=85.64 E-value=0.85 Score=29.62 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=34.0
Q ss_pred EEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCC---cEEEEEEeC
Q 033334 4 LNISTNVKLDGVDTSSILSEATSTVANIIGKPE---AYVMIVLKG 45 (121)
Q Consensus 4 i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~---~~i~v~v~~ 45 (121)
++|.+-.+.+.++++++.+.+.+++.+.++.|. ..+.|.+.+
T Consensus 85 V~i~ll~GRt~EqK~~L~e~v~~al~~~l~~~~~~~~~lsVeI~E 129 (146)
T 3e6q_A 85 ACLSILDGRDAATRQALGESLCEVLAGAVAGGGEEGVQVSVEVRE 129 (146)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHEEECSSSCEEEEEEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHhCCccCCceEEEEEEEE
Confidence 556677789999999999999999999999765 366666653
No 69
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=81.86 E-value=2.3 Score=25.35 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=31.9
Q ss_pred CCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCC
Q 033334 54 TEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKS 94 (121)
Q Consensus 54 ~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ 94 (121)
...+.+++++..-...+.+...++.+++.+.+.+.+|++++
T Consensus 43 ~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~l~~~~gv~~~ 83 (109)
T 3lax_A 43 NDEMTVEVELSQLFTDDYGRLQALTREITRQLKDEILVTPR 83 (109)
T ss_dssp EEEEEEEEEECTTCCCCHHHHHHHHHHHHHHHHHHHSSCCE
T ss_pred ceeEEEEEEEeeccccccchhhhhHHHHHHHHHHHhCCccc
Confidence 34577777776544456777789999999999999999874
No 70
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=72.67 E-value=3.4 Score=31.79 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=31.5
Q ss_pred CCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 56 DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 56 ~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
--..|+|.--.=+++.=-|++-+.-.-++|.+.||+|++|+||++.+=
T Consensus 86 rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~ 133 (465)
T 1yfs_A 86 RHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKD 133 (465)
T ss_dssp SCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETT
T ss_pred CccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCC
Confidence 344565553111123333555666667888899999999999999874
No 71
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=68.52 E-value=22 Score=23.36 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-------CChhHHHHHHHHHHHHHHHHh
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAILEKKL 89 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~-------~~~e~~~~~~~~i~~~l~~~l 89 (121)
.+.|.+.+.+.+.+.+|.+.+.+-- +.-...-.+.-|+++||+-.+.. .+++.+++++++|.+-+.+.+
T Consensus 101 s~~lA~~i~~~l~~~~g~~~rgvk~----~~~~vLr~t~~PavLvE~gFisN~~d~~~l~~~~~~~~~A~ai~~gI~~y~ 176 (179)
T 1jwq_A 101 SKAFANVMHKYFAPATGLTDRGIRY----GNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYL 176 (179)
T ss_dssp GHHHHHHHHHHHHHHHCSCEEEEEE----CCCHHHHSCSSCEEEEEEEETTSHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccc----CcchhccCCCCCEEEEEecCCCCHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999888866554322 21111224678999999976632 245567889999999888877
Q ss_pred CC
Q 033334 90 SV 91 (121)
Q Consensus 90 gi 91 (121)
+.
T Consensus 177 ~~ 178 (179)
T 1jwq_A 177 DV 178 (179)
T ss_dssp TC
T ss_pred cC
Confidence 64
No 72
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=67.18 E-value=7.5 Score=28.61 Aligned_cols=34 Identities=9% Similarity=0.251 Sum_probs=29.0
Q ss_pred eCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Q 033334 67 GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (121)
Q Consensus 67 g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f 100 (121)
..+++|+-.+....+.+.|++.+||...||-|.=
T Consensus 178 ~~it~e~i~~~i~~~~~~l~~~fGi~~PrIAV~g 211 (334)
T 3lxy_A 178 GAITQASLHEVITILDNDLKTKFGITQPQIYVCG 211 (334)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHTSCCSSCCEEEEC
T ss_pred hhCCHHHHHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence 4478899888888888999999999999988763
No 73
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=62.17 E-value=6.4 Score=23.03 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCce
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSR 109 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g 109 (121)
+.+.+.+.|+++++.+.+.|.+-+...|-
T Consensus 29 L~~~l~~kL~l~~~~~~LsYk~~~s~~~v 57 (83)
T 1oey_A 29 VRDMVSKKLELRLEHTKLSYRPRDSNELV 57 (83)
T ss_dssp HHHHHHHHTTCCGGGCCEEECCTTCSSCE
T ss_pred HHHHHHHHhCCCcceeEEEeeCCCCCCee
Confidence 78888999999999999999997666654
No 74
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=61.52 E-value=7.5 Score=28.35 Aligned_cols=38 Identities=16% Similarity=0.233 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEEeCC--CCCceeCCc
Q 033334 76 KLSAAISAILEKKLSVPKSRFFIKFYDTK--AHQSREHAQ 113 (121)
Q Consensus 76 ~~~~~i~~~l~~~lgi~~~ri~i~f~~~~--~~~~g~~G~ 113 (121)
-..-.+.....++||++.++|.|..-|.+ +..+|..|+
T Consensus 48 G~~T~laQIaAe~Lgi~~e~V~v~~~DT~~~p~~~~T~gS 87 (330)
T 3hrd_B 48 GSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSAS 87 (330)
T ss_dssp CHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTT
T ss_pred CHHHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcch
Confidence 34556788899999999999999998765 333444443
No 75
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=60.96 E-value=23 Score=20.87 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCC--ChhHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Q 033334 23 EATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGL--NPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (121)
Q Consensus 23 ~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~--~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f 100 (121)
++.+++....+..+.++.. +... ++.+...+++++ -+.. ..+...++.+.+.+.+.+.+|+++ .|.|
T Consensus 18 eIE~~l~~~p~v~~~~~v~-v~~~-----~~~e~l~~~ve~--~~~~~~~~~~~~~l~~~i~~~l~~~~~~~~---~v~~ 86 (109)
T 3gxs_A 18 QIETILLQFKELGSDYLIT-LETA-----ESNDEMTVEVEL--SQLFTDDYGRLQALTREITRQLKDEILVTP---RVKL 86 (109)
T ss_dssp HHHHHHHTCTTEEEEEEEE-EEEE-----TTEEEEEEEEEE--CTTCCCCHHHHHHHHHHHHHHHHHHHSSCC---EEEE
T ss_pred HHHHHHHhCCCcCCcEEEE-EEcC-----CCceEEEEEEEE--cCccccchhHHHHHHHHHHHHHHHhhCCce---EEEE
Confidence 4555666654443333332 3211 234567788877 2322 235567899999999999999987 4555
Q ss_pred Ee---CCCC
Q 033334 101 YD---TKAH 106 (121)
Q Consensus 101 ~~---~~~~ 106 (121)
.+ ++..
T Consensus 87 v~~~~lPrt 95 (109)
T 3gxs_A 87 VPKGALPKS 95 (109)
T ss_dssp ECTTCSCCC
T ss_pred ECCCCccCC
Confidence 54 5544
No 76
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=59.22 E-value=17 Score=26.25 Aligned_cols=42 Identities=12% Similarity=0.051 Sum_probs=30.5
Q ss_pred eeEEEEEe--eeC-CChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 58 AAYGELVS--IGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 58 ~~~v~i~~--~g~-~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
+.+|-.+. -|- .+.+.+.++++++.+.+.++.||++++|++-
T Consensus 134 a~vV~mh~d~~G~p~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilD 178 (300)
T 3k13_A 134 AATVVMAFDEKGQADTAARKIEVCERAYRLLVDKVGFNPHDIIFD 178 (300)
T ss_dssp CEEEEESEETTEECCSHHHHHHHHHHHHHHHHHHTCCCGGGEEEE
T ss_pred CeEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEEEe
Confidence 34444444 232 4577888899999888878899999999863
No 77
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=58.92 E-value=11 Score=21.04 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
.+.+.+.+++..|+|+++..+.|..
T Consensus 26 V~~lK~~i~~~~~ip~~~qrL~~~g 50 (85)
T 3n3k_B 26 IENVKAKIQDKEGIPPDQQRLIFAG 50 (85)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEETB
T ss_pred HHHHHHHHHHHHCCCHHHEEEEECC
Confidence 3456677777889999999998853
No 78
>2kxo_A Cell division topological specificity factor; MINE, MIND-binding, to specificity, cell cycle; NMR {Neisseria gonorrhoeae}
Probab=57.92 E-value=21 Score=21.24 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=32.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 68 ~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
..+|+.-.++-+.|.+.+.+...|+++++-|.+..-
T Consensus 34 ~~~pd~l~~lk~eIl~VIsKYv~Id~~~v~V~l~~~ 69 (95)
T 2kxo_A 34 GQTPDYLPTLRKALMEVLSKYVNVSLDNIRISQEKQ 69 (95)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHSCCCTTSEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHheecchhheEEEEEeC
Confidence 367888899999999999999999999999999875
No 79
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=57.37 E-value=11 Score=28.89 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=28.1
Q ss_pred CeeEEEE---EeeeCCChhHHHHHHHHHHHHHH--HHhCCCCCeEEEEEEe
Q 033334 57 PAAYGEL---VSIGGLNPDVNKKLSAAISAILE--KKLSVPKSRFFIKFYD 102 (121)
Q Consensus 57 p~~~v~i---~~~g~~~~e~~~~~~~~i~~~l~--~~lgi~~~ri~i~f~~ 102 (121)
-..|+|. .|.|. =-|++-+.-.-++|. +.||+|++|+||++..
T Consensus 86 HhTfFEMLGNfSFGD---YFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~ 133 (441)
T 3hy0_A 86 HHTFFEMLGNFSFGD---YFKLDAILFAWLLLTSEKWFALPKERLWVTVYE 133 (441)
T ss_dssp CCSEEEEEEEEESSS---CCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEET
T ss_pred cccceeeccccccch---hhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeC
Confidence 4455555 34442 234444555567888 5699999999999765
No 80
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=56.77 E-value=28 Score=21.44 Aligned_cols=82 Identities=10% Similarity=0.124 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEe-----CCceeeecC-CC----------CCeeEEEEEeeeCC----ChhHHHHHH
Q 033334 19 SILSEATSTVANIIGKPEAYVMIVLK-----GSVPMSFGG-TE----------DPAAYGELVSIGGL----NPDVNKKLS 78 (121)
Q Consensus 19 ~~~~~l~~~~~~~~~kp~~~i~v~v~-----~~~~~~~gg-~~----------~p~~~v~i~~~g~~----~~e~~~~~~ 78 (121)
.-..++-+.+++..|.|.+.+.+.+. ++..+..-| .+ .....+.++...|. .-+. ..-.
T Consensus 21 ~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~Vk~~~g~~~~~~v~~-~~tv 99 (152)
T 3b08_A 21 DTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEP-SDTI 99 (152)
T ss_dssp CBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEEEEESSSCEEEEEECT-TCBH
T ss_pred CCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccceeeeecCCCEEEEEeCC-CCcH
Confidence 34556777777788999886665432 111111111 11 11233334433221 1111 1123
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+.+.+++..|+|+++..+.|.
T Consensus 100 ~~lK~~i~~~~gi~~~~qrL~~~ 122 (152)
T 3b08_A 100 ENVKAKIQDKEGIPPDQQRLIFA 122 (152)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHhCcChhhEEEEEC
Confidence 45667777788999999999874
No 81
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=56.39 E-value=13 Score=20.03 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+.+.+++..|+|+++..+.|.
T Consensus 24 ~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 3a9j_A 24 ENVKAKIQDKEGIPPDQQRLIFA 46 (76)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcCHHHeEEEEC
Confidence 44666677788999999999884
No 82
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=55.87 E-value=8.2 Score=31.44 Aligned_cols=80 Identities=11% Similarity=0.119 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
-......++|..|+.||.|.+.|.|...+-...-+++.+--. -...+.|.--....+++-+++.+.-.+.|+++++++
T Consensus 482 GqG~~T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~aS--r~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 559 (769)
T 1rm6_A 482 GQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSS--RVTFMVGNASISAAEELKGVLVKAAAKKLDAREEDI 559 (769)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHe
Confidence 456788999999999999999999977543222222111000 000111212245666777777777778889988887
Q ss_pred EE
Q 033334 97 FI 98 (121)
Q Consensus 97 ~i 98 (121)
.+
T Consensus 560 ~~ 561 (769)
T 1rm6_A 560 EV 561 (769)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 83
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=55.65 E-value=13 Score=19.95 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.+.+.+++..|+|+++..+.|.
T Consensus 24 ~~lK~~i~~~~~i~~~~q~L~~~ 46 (76)
T 1ndd_A 24 ERIKERVEEKEGIPPQQQRLIYS 46 (76)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChHHEEEEEC
Confidence 44666677788999999999884
No 84
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=54.91 E-value=17 Score=20.35 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+.+++..|+|+++..+.|.
T Consensus 30 V~~lK~~i~~~~gi~~~~qrL~~~ 53 (87)
T 1wh3_A 30 ILGLKQQIEDQQGLPKKQQQLEFQ 53 (87)
T ss_dssp HHHHHHHHHHHTCCCTTTEEEEET
T ss_pred HHHHHHHHHHHhCCChHHEEEEEC
Confidence 345667777889999999999874
No 85
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=54.69 E-value=5.2 Score=29.19 Aligned_cols=29 Identities=7% Similarity=0.003 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeC
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKG 45 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~ 45 (121)
-+.....++|.+|+.||.|.+.|.|..-+
T Consensus 46 GQG~~T~laQIaAe~Lgi~~e~V~v~~~D 74 (330)
T 3hrd_B 46 GQGSGTAMAQIAAEELGLDYEKIHVTWGD 74 (330)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEEESB
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEEecC
Confidence 45678899999999999999999986643
No 86
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=54.63 E-value=7.8 Score=25.48 Aligned_cols=50 Identities=10% Similarity=0.018 Sum_probs=33.9
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCc
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQ 113 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~ 113 (121)
-+.++.++..+. -.-+..++.+.+.+.||++.++|.|.-.-. +..||-|+
T Consensus 95 NvD~tii~q~PK--i~p~~~~m~~~ia~~L~~~~~~V~vKAtT~--E~LGf~Gr 144 (159)
T 1t0a_A 95 NLDVTIIAQAPK--MAPHIEDMRQVLAADLNADVADINVKATTT--EKLGFTGR 144 (159)
T ss_dssp EEEEEEECSSSC--CGGGHHHHHHHHHHHTTCCGGGEEEEEECC--TTCHHHHT
T ss_pred EEEEEEEcCCCc--ChHHHHHHHHHHHHHhCCCCceEEEEEecC--CCCCcccC
Confidence 344555554331 123556788889999999999999998765 55666553
No 87
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=54.47 E-value=47 Score=24.32 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=27.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 68 ~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
.++++.-.+..+.+.+.|.+.+||...||-|.
T Consensus 174 ~it~e~i~~~i~~~~~~L~~~fgi~~PrIaV~ 205 (328)
T 1yxo_A 174 AISDERLTRVARILHADLRDKFGIAHPRILVC 205 (328)
T ss_dssp HCCHHHHHHHHHHHHHHHHHTTCCSSCEEEEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHcCCCCCCEEEE
Confidence 47888888888888888999999999998764
No 88
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=53.90 E-value=26 Score=21.38 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=24.9
Q ss_pred eCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEE
Q 033334 8 TNVKLDGVDTSSILSEATSTVANIIGKPEAYVMI 41 (121)
Q Consensus 8 tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v 41 (121)
..+..+++ .-+--+++.+.+|+.||.|.+.|.+
T Consensus 40 V~v~ApP~-dGkAN~ali~~LAk~l~V~ks~V~I 72 (108)
T 1n91_A 40 VAITAPPV-DGQANSHLVKFLGKQFRVAKSQVVI 72 (108)
T ss_dssp EECCCCSS-HHHHHHHHHHHHHHHTCCCTTTEEE
T ss_pred EEEecCCC-CChHHHHHHHHHHHHhCCccceEEE
Confidence 33444444 4567789999999999999988776
No 89
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=53.57 E-value=8.2 Score=25.42 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecC-CC-------------CC--eeEEEEEeeeCCChhHHHHHHHHH
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGG-TE-------------DP--AAYGELVSIGGLNPDVNKKLSAAI 81 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg-~~-------------~p--~~~v~i~~~g~~~~e~~~~~~~~i 81 (121)
+-++-.+++++..+.+...- =-++.+ .+-.|-| ++ .- ..-+.++.++..+ . -.-+..++
T Consensus 41 DVl~HAi~DAlLGA~~lGDI--G~~Fpd-td~~~kga~S~~lL~~~~~~v~~~G~~i~NvD~tii~q~P-K-i~p~~~~m 115 (160)
T 2pmp_A 41 DVLLHCVVDAILGALGLPDI--GQIFPD-SDPKWKGAASSVFIKEAVRLMDEAGYEIGNLDATLILQRP-K-ISPHKETI 115 (160)
T ss_dssp CHHHHHHHHHHHHHHTCCCH--HHHSCS-SCSSCSSCCHHHHHHHHHHHHHHHTEEEEEEEEEEECSSS-C-CGGGHHHH
T ss_pred HHHHHHHHHHHHHhccCCCC--cccCCC-CChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEecCC-c-CHHHHHHH
Confidence 56777888888887776431 011111 1112222 21 11 2334455665433 1 12355678
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCCCCceeCC
Q 033334 82 SAILEKKLSVPKSRFFIKFYDTKAHQSREHA 112 (121)
Q Consensus 82 ~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G 112 (121)
.+.+.+.||++.++|.|.-.-. +..||-|
T Consensus 116 ~~~ia~~L~~~~~~V~vKAtT~--E~LGf~G 144 (160)
T 2pmp_A 116 RSNLSKLLGADPSVVNLKAKTH--EKVDSLG 144 (160)
T ss_dssp HHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHHHCCCcceEEEEEecC--CCCCccc
Confidence 8889999999999999998765 5666654
No 90
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=53.49 E-value=12 Score=20.78 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 26 V~~lK~~i~~~~~i~~~~qrL~~~ 49 (85)
T 3mtn_B 26 IENVKAKIQDKEGIPPDQQRLIFA 49 (85)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 445667777888999999998875
No 91
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=53.23 E-value=21 Score=20.92 Aligned_cols=25 Identities=12% Similarity=0.097 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
.+.+.+.+++..|||+++..+.|.+
T Consensus 40 V~~LK~kI~~~~GiP~~~QrL~~~~ 64 (95)
T 2kjr_A 40 VAQLKTKLEILTGGCAGTMKVQVFK 64 (95)
T ss_dssp HHHHHHHHHHHHCSCTTTEEEEEEE
T ss_pred HHHHHHHHHHHHCcCHHHeEEEEec
Confidence 3457778888899999999999974
No 92
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=52.92 E-value=8.7 Score=25.30 Aligned_cols=50 Identities=8% Similarity=-0.000 Sum_probs=34.3
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCc
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQ 113 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~ 113 (121)
-+.++.++..+ . -.-+..++.+.+.+.||++.++|.|.-.-. +..||-|+
T Consensus 94 NvD~tii~q~P-K-i~p~~~~m~~~ia~~L~~~~~~V~vKAtT~--E~LGf~Gr 143 (160)
T 1gx1_A 94 NVDVTIIAQAP-K-MLPHIPQMRVFIAEDLGCHMDDVNVKATTT--EKLGFTGR 143 (160)
T ss_dssp EEEEEEECSSS-C-CGGGHHHHHHHHHHHTTCCGGGEEEEEECC--TTCHHHHT
T ss_pred EEEEEEEcCCC-c-chHHHHHHHHHHHHHhCCCCceEEEEEccC--CCCCcccC
Confidence 44556665433 1 122556788889999999999999988765 66666554
No 93
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=52.21 E-value=8.4 Score=25.42 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecC-CC-------------CC--eeEEEEEeeeCCChhHHHHHHHH
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGG-TE-------------DP--AAYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg-~~-------------~p--~~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
-+-++-.+++++..+.+...-- -++.+ .+-.|.| ++ .- ..-+.++.++..+. -.-+..+
T Consensus 43 gDVllHAi~DAlLGA~~lGDIG--~~Fpd-tdp~~kga~S~~lL~~~~~~v~~~G~~i~NvD~tii~q~PK--l~p~~~~ 117 (162)
T 3re3_A 43 GDVLIHALCDAILGALGLGDIG--KHFLD-TDNQFKNIDSKFFLAEIKKMLDKKQYSISNIDCTIIAQAPK--MLPHIEK 117 (162)
T ss_dssp CCHHHHHHHHHHHHHTTCCCHH--HHC--------CCSCHHHHHHHHHHHHHHTTCEEEEEEEEEECSSSC--CGGGHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCc--ccCCC-CChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEcCCCc--chhHHHH
Confidence 3577888888888888764420 01111 1112222 21 11 23455566654331 1235667
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCC
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHA 112 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G 112 (121)
+.+.+.+.||+++++|.|.-.-. +..||-|
T Consensus 118 m~~~la~~L~~~~~~V~vKAtT~--E~LGf~G 147 (162)
T 3re3_A 118 MRACLANILEIQISQINIKATTT--ERLGFIG 147 (162)
T ss_dssp HHHHHHHHHTSCGGGEEEEEECC--SSCHHHH
T ss_pred HHHHHHHHHCCCCceEEEEEecC--CCcCCCc
Confidence 88888999999999999998765 5566544
No 94
>2hi1_A 4-hydroxythreonine-4-phosphate dehydrogenase 2; pyridoxal phosphate biosynthesis, structural GENO PSI-2, protein structure initiative; 2.30A {Salmonella typhimurium}
Probab=52.16 E-value=48 Score=24.30 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=26.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 68 GLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 68 ~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
.++++.-.+..+.+.+ |.+.+||...||-|.
T Consensus 181 ~it~e~i~~~i~~~~~-L~~~fgi~~PrIaV~ 211 (330)
T 2hi1_A 181 TLSTARVETVIGIADT-FLKRVGYVKPRIAVA 211 (330)
T ss_dssp HCCHHHHHHHHHHHHH-HHHHTTCSSCEEEEE
T ss_pred hcCHHHHHHHHHHHHH-HHHHcCCCCCCEEEE
Confidence 4788888888888888 999999999998764
No 95
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=51.52 E-value=9.1 Score=25.75 Aligned_cols=88 Identities=13% Similarity=0.047 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecC-CC-------------CC--eeEEEEEeeeCCChhHHHHHHHHH
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGG-TE-------------DP--AAYGELVSIGGLNPDVNKKLSAAI 81 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg-~~-------------~p--~~~v~i~~~g~~~~e~~~~~~~~i 81 (121)
+-++-.+++++..+.+...-- -++ |+.+-.|.| ++ .- ..-+.++.++..+. -.-+..++
T Consensus 61 DVllHAi~DALLGA~glGDIG--~~F-PdtDp~~kgadS~~lL~~~~~lv~~~G~~I~NvD~tIiaq~PK--l~p~~~~m 135 (183)
T 3f0d_A 61 DVLLHAITDALFGAAALGDIG--RHF-SDTDPRFKGADSRALLRECASRVAQAGFAIRNVDSTIIAQAPK--LAPHIDAM 135 (183)
T ss_dssp CHHHHHHHHHHHHHTTCCCHH--HHS-CC----CTTCCHHHHHHHHHHHHHHTTEEEEEEEEEEECSSSC--CGGGHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCc--ccC-CCCChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEcCCCc--chhHHHHH
Confidence 567778888888887754310 011 111112222 21 12 23445566654331 12256678
Q ss_pred HHHHHHHhCCCCCeEEEEEEeCCCCCceeCC
Q 033334 82 SAILEKKLSVPKSRFFIKFYDTKAHQSREHA 112 (121)
Q Consensus 82 ~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G 112 (121)
.+.|.+.||++.++|.|.-.-. +..||-|
T Consensus 136 r~~la~~L~i~~~~VnVKATT~--E~LGf~G 164 (183)
T 3f0d_A 136 RANIAADLDLPLDRVNVKAKTN--EKLGYLG 164 (183)
T ss_dssp HHHHHHHHTCCGGGEEEEEECC--TTCHHHH
T ss_pred HHHHHHHHCCCcceEEEEEecC--CCCccCc
Confidence 8889999999999999998775 5566544
No 96
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=51.46 E-value=16 Score=20.85 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|+|+++..+.|.
T Consensus 34 V~~LK~~i~~~~gip~~~qrL~~~ 57 (92)
T 1wxv_A 34 VQDLAQVVEEVIGVPQSFQKLIFK 57 (92)
T ss_dssp HHHHHHHHHHHTCCCTTTCEEEET
T ss_pred HHHHHHHHHHHHCcCHHHEEEEEC
Confidence 355777788889999999999874
No 97
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=51.45 E-value=23 Score=20.93 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
.+.+.+.|++..|||+++..+.|..
T Consensus 39 V~~LK~kIe~~~Gip~~~QrLi~~g 63 (97)
T 2kj6_A 39 VEAVKEKLWKKCGTSVNSMALELYD 63 (97)
T ss_dssp HHHHHHHHHHHHCCCTTSEEEEEEC
T ss_pred HHHHHHHHHHHHCcCHHHeEEEEec
Confidence 3457778888999999999999976
No 98
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=51.05 E-value=9.3 Score=31.21 Aligned_cols=79 Identities=13% Similarity=0.130 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
-+.....++|..|+.||.|.+.|.|...+-. .-+++-+--. -...+.|.--....+++-+++.++-.+.|+.+++++
T Consensus 507 GqG~~T~~aQiaAe~LGip~~~V~v~~~DT~-~p~~~~t~aS--r~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 583 (788)
T 1t3q_B 507 GQGHETTLAQIAADVLGVPASDVVIQAGSTK-NTYGFGAYAS--RGAVIGAGSIGRAASIVRERVKQLAGHLLEAASEDI 583 (788)
T ss_dssp SSCHHHHHHHHHHHHHTSCGGGEEEECSBTT-SCCBCCSCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCCHHHHHHHHHHHHHCCCHHHEEEecCCCC-CCCCCCCccc--hHHHHHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHE
Confidence 4567889999999999999999999765432 3333211000 000011211245666777777777778889998887
Q ss_pred EE
Q 033334 97 FI 98 (121)
Q Consensus 97 ~i 98 (121)
.+
T Consensus 584 ~~ 585 (788)
T 1t3q_B 584 VI 585 (788)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 99
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=50.99 E-value=20 Score=20.13 Aligned_cols=24 Identities=4% Similarity=-0.097 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 32 V~~lK~~i~~~~gip~~~qrL~~~ 55 (89)
T 1wy8_A 32 IEELRERVWALFDVRPECQRLFYR 55 (89)
T ss_dssp HHHHHHHHHHHSCCCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 345667778889999999999874
No 100
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=50.86 E-value=18 Score=19.80 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.+.+.+++..|+|+++..+.|.
T Consensus 28 ~~lK~~i~~~~gip~~~qrL~~~ 50 (78)
T 2faz_A 28 EELRRKIQELFHVEPGLQRLFYR 50 (78)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChhhEEEEEC
Confidence 34566677788999999999874
No 101
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.73 E-value=18 Score=19.83 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.+.+.+++..|+|+++..+.|.
T Consensus 31 ~~LK~~i~~~~~i~~~~qrL~~~ 53 (81)
T 2dzi_A 31 STLKQLVSEKLNVPVRQQRLLFK 53 (81)
T ss_dssp HHHHHHHHHHTCCCTTTCEEEET
T ss_pred HHHHHHHHHHHCcCHHHEEEEEC
Confidence 45666677788999999999874
No 102
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=50.44 E-value=17 Score=20.60 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+.+.+++..|+|+++..+.|.
T Consensus 35 ~~LK~~I~~~~gip~~~qrL~~~ 57 (85)
T 2kd0_A 35 KDLKSQLQPITNVLPRGQKLIFK 57 (85)
T ss_dssp HHHHHHHHHHHCCCTTTCEEEET
T ss_pred HHHHHHHHHHHCcChHHEEEEEC
Confidence 44666677788999999999874
No 103
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=50.06 E-value=8.9 Score=31.40 Aligned_cols=80 Identities=13% Similarity=0.101 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
-+.....++|..|+.||.|.+.|.|...+-...-.++.+--. -...+.|.--....+++-+++.++-.+.|+.+++++
T Consensus 523 GqG~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~p~~~~t~aS--r~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 600 (803)
T 1ffv_B 523 GQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGS--RSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDL 600 (803)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGE
T ss_pred CCCHHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 457788999999999999999999976543222222111000 000011111245667777777777778888888876
Q ss_pred EE
Q 033334 97 FI 98 (121)
Q Consensus 97 ~i 98 (121)
.+
T Consensus 601 ~~ 602 (803)
T 1ffv_B 601 DW 602 (803)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 104
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=49.93 E-value=18 Score=22.95 Aligned_cols=38 Identities=16% Similarity=0.228 Sum_probs=23.1
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
+..++..| ++++.+.+.-+++. -+.+.+|++.++|.+.
T Consensus 112 ~~~~~Lyg-R~~~~s~e~~e~F~-~~~~~~Gl~~enI~~~ 149 (157)
T 3fiq_A 112 TNVILVAG-KREDLNKAQKQELR-KLAEEYNIPNENTQHL 149 (157)
T ss_dssp EEEEEEEE-SSSCCCHHHHHHHH-HHHHHTTCCGGGCEEC
T ss_pred EEEEEEEc-CCCCCCHHHHHHHH-HHHHHcCCCHHHEEeC
Confidence 34444444 56555555555433 3556779999998753
No 105
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=49.91 E-value=9.3 Score=31.30 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
-+.....++|..|+.||.|.+.|.|...+-...-+++.+--. -...+.|.--....+++-+++.++-.+.|+.+++++
T Consensus 529 GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aS--r~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l 606 (809)
T 1n62_B 529 GQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGS--RSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDL 606 (809)
T ss_dssp SSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTT--CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGE
T ss_pred CCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 456788999999999999999999976542222222111000 000011111145667777777777778889888876
Q ss_pred EE
Q 033334 97 FI 98 (121)
Q Consensus 97 ~i 98 (121)
.+
T Consensus 607 ~~ 608 (809)
T 1n62_B 607 EW 608 (809)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 106
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=49.73 E-value=19 Score=19.48 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+.+.+++..|+|+++..+.|.
T Consensus 27 ~~LK~~i~~~~~i~~~~qrL~~~ 49 (77)
T 2bwf_A 27 LQFKEAINKANGIPVANQRLIYS 49 (77)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCHHHEEEEEC
Confidence 44566677778999999999874
No 107
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=49.64 E-value=21 Score=20.76 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 37 V~~LK~~I~~~~gip~~~QrLi~~ 60 (94)
T 2kan_A 37 VSSLKDKIHIVENTPIKRMQLYYS 60 (94)
T ss_dssp HHHHHHHHHHHSSSCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcCHHHEEEEEC
Confidence 345667777888999999999874
No 108
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=49.63 E-value=19 Score=19.79 Aligned_cols=24 Identities=17% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+.+++..|+|+++..+.|.
T Consensus 27 V~~lK~~i~~~~gip~~~qrL~~~ 50 (79)
T 3phx_B 27 VAHLKQQVSGLEGVQDDLFWLTFE 50 (79)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHhhcCCCHHHEEEEEC
Confidence 344566677778999999999885
No 109
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=48.98 E-value=19 Score=20.44 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 33 V~~LK~~I~~~~gip~~~QrLi~~ 56 (84)
T 2kk8_A 33 LLVVKQKIERSQHIPVSKQTLIVD 56 (84)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 345667777888999999999885
No 110
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=48.55 E-value=16 Score=20.86 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+.+++..|+|+++..+.|.
T Consensus 32 V~~LK~~I~~~~gip~~~qrL~~~ 55 (88)
T 1sif_A 32 IENLKAKIQDKEGIPPDQQRLIFA 55 (88)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 344666677788999999999884
No 111
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=47.97 E-value=20 Score=20.53 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|+|+++..+.|.
T Consensus 24 V~~LK~~i~~~~gip~~~qrL~~~ 47 (96)
T 3k9o_B 24 IENVKAKIQDKEGIPPDQQRLIFA 47 (96)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHhhhCCChhHEEEEEC
Confidence 445666777788999999999885
No 112
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=47.91 E-value=56 Score=21.41 Aligned_cols=74 Identities=9% Similarity=0.124 Sum_probs=40.9
Q ss_pred HHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHh-CCCCCeEEEEEE
Q 033334 23 EATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKL-SVPKSRFFIKFY 101 (121)
Q Consensus 23 ~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~l-gi~~~ri~i~f~ 101 (121)
+|++.|..+-|.-..++.+.+.. .....|.|-|-|+...+.+.+... . +|..++.... |+++++|.|.-+
T Consensus 94 ELartI~~i~~V~~ARVhl~lP~------~~~~~~sASV~l~~~~g~~l~~~q--~-~I~~LVa~SV~gL~~enVtVvdq 164 (171)
T 1yj7_A 94 DIERLLSKIPGVIDCSVSLNVNN------NESQPSSAAVLVISSPEVNLAPSV--I-QIKNLVKNSVDDLKLENISVVIK 164 (171)
T ss_dssp HHHHHHTTSTTEEEEEEEEEC-------------CEEEEEEEECTTCCCGGGH--H-HHHHHHHHHSTTCCGGGEEEEEE
T ss_pred HHHHHHHcCCCeeEEEEEEECCC------CCCCCceEEEEEEeCCCCCCcHhH--H-HHHHHHHHhcCCCCcccEEEEeC
Confidence 34444444444433344443332 124467888888776665433332 2 4888888654 899999999877
Q ss_pred eCCC
Q 033334 102 DTKA 105 (121)
Q Consensus 102 ~~~~ 105 (121)
+-.+
T Consensus 165 ~~~~ 168 (171)
T 1yj7_A 165 SSSG 168 (171)
T ss_dssp ECC-
T ss_pred CCCC
Confidence 6544
No 113
>2pmp_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; plant enzymes, MEP pathway, isoprenoid proteins, CMP, zinc IONS, lyase; HET: C5P; 2.30A {Arabidopsis thaliana}
Probab=47.88 E-value=45 Score=21.86 Aligned_cols=39 Identities=15% Similarity=0.147 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCC
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED 56 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~ 56 (121)
.....++.+.+|++++-|.+.|.|.-.+.+.+-|-|+.+
T Consensus 109 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~e 147 (160)
T 2pmp_A 109 SPHKETIRSNLSKLLGADPSVVNLKAKTHEKVDSLGENR 147 (160)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTS
T ss_pred HHHHHHHHHHHHHHHCCCcceEEEEEecCCCCCcccCCC
Confidence 456789999999999999999999999999998888764
No 114
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.67 E-value=22 Score=22.17 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.+.+.+.+.+++|+++..+.|.
T Consensus 40 ~dLKe~ls~~~~iP~e~qrLIy~ 62 (118)
T 2daf_A 40 KYLKDHFSHLLGIPHSVLQIRYS 62 (118)
T ss_dssp HHHHHHHHHHHTCCTTTEEEEET
T ss_pred HHHHHHHHhhhCCChHHEEEEEC
Confidence 34566667778999999998874
No 115
>1t0a_A 2C-methyl-D-erythritol 2,4-cyclodiphosphate synth; mixed alpha beta, homotrimer, synthase, lyase; HET: FPP; 1.60A {Shewanella oneidensis} SCOP: d.79.5.1 PDB: 1vh8_A* 1vha_A* 1jn1_A 3fpi_A* 3f6m_A*
Probab=47.38 E-value=45 Score=21.85 Aligned_cols=39 Identities=10% Similarity=0.196 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCC
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED 56 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~ 56 (121)
.....++.+.+|++++-|.+.|.|.-.+.+.+-|-|+.+
T Consensus 108 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~e 146 (159)
T 1t0a_A 108 APHIEDMRQVLAADLNADVADINVKATTTEKLGFTGRKE 146 (159)
T ss_dssp GGGHHHHHHHHHHHTTCCGGGEEEEEECCTTCHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCcccCCC
Confidence 456789999999999999999999999999888888764
No 116
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=46.56 E-value=8.3 Score=31.46 Aligned_cols=80 Identities=9% Similarity=0.087 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
-+.....++|..|+.||.|.+.|.|...+-...-+++-+-- --...+.|.--....+++-++|.++-.+.|+++++++
T Consensus 489 GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~a--Sr~t~~~G~Av~~Aa~~l~~~l~~~aa~~~~~~~~~l 566 (777)
T 2w3s_B 489 GQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAA--SSGADMNGMAVKDACETLRGRLAGFVAAREGCAARDV 566 (777)
T ss_dssp SSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCT--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGC
T ss_pred CCChhHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHE
Confidence 45788899999999999999999986543222122211000 0000011211234556666667676777788888776
Q ss_pred EE
Q 033334 97 FI 98 (121)
Q Consensus 97 ~i 98 (121)
.+
T Consensus 567 ~~ 568 (777)
T 2w3s_B 567 IF 568 (777)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 117
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=46.21 E-value=21 Score=19.59 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.|.+.+.+..|++++.+.+.|.
T Consensus 25 ~kl~~~y~~~~gi~~~~~rf~fd 47 (72)
T 1wm3_A 25 SKLMKAYCERQGLSMRQIRFRFD 47 (72)
T ss_dssp HHHHHHHHHHHTCCTTTCEEEET
T ss_pred HHHHHHHHHHhCCCcceEEEEEC
Confidence 34556667788999999988885
No 118
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=46.20 E-value=22 Score=20.54 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+.+++..|+|+++..+.|.
T Consensus 23 V~~LK~~I~~~~gi~~~~qrL~~~ 46 (98)
T 1yx5_B 23 IENVKAKIQDKEGIPPDQQRLIFA 46 (98)
T ss_dssp HHHHHHHHHHHTCCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 345666777788999999999884
No 119
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=45.58 E-value=23 Score=19.91 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.+.+.+++..|+|+++..+.|.
T Consensus 41 ~~lK~~i~~~~gip~~~qrLi~~ 63 (88)
T 4eew_A 41 KEFKEHIAASVSIPSEKQRLIYQ 63 (88)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCHHHEEEEEC
Confidence 34556667778999999999884
No 120
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=45.46 E-value=24 Score=20.29 Aligned_cols=25 Identities=12% Similarity=0.252 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 79 AAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
..+.+.+++..|||++...+.|.+-
T Consensus 28 ~~lK~ki~~~~Gip~~~QrLi~~~~ 52 (86)
T 4b6w_A 28 ESIKENVFTHFATPPEYMQLQLIDD 52 (86)
T ss_dssp HHHHHHHHTTSCCCGGGEEEEEECT
T ss_pred HHHHHHHHHHHCCCHHHEEEEEecC
Confidence 4467778899999999999998754
No 121
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=45.19 E-value=29 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 79 AAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
..|.+.|++..|||+++..+.|..
T Consensus 31 ~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 31 NDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp HHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred HHHHHHHHHHhCCCHHHeEEEEec
Confidence 456777888899999999999975
No 122
>1gx1_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, lyase, isoprene biosynthesis; HET: CDP; 1.8A {Escherichia coli} SCOP: d.79.5.1 PDB: 1h47_A* 1h48_A* 3ern_A* 3eor_A* 3elc_A* 3esj_A* 3fba_A* 2amt_A* 1knj_A* 1knk_A 1u3l_A* 1u3p_A 1u40_A* 1u43_A* 1jy8_A* 2gzl_A* 1yqn_A* 3ghz_A* 3t80_A*
Probab=45.17 E-value=51 Score=21.61 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCC
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED 56 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~ 56 (121)
.....++.+.+|++++-|.+.|.|.-.+.+.+-|-|+.+
T Consensus 107 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LGf~Gr~e 145 (160)
T 1gx1_A 107 LPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGE 145 (160)
T ss_dssp GGGHHHHHHHHHHHTTCCGGGEEEEEECCTTCHHHHTTS
T ss_pred hHHHHHHHHHHHHHhCCCCceEEEEEccCCCCCcccCCC
Confidence 456789999999999999999999999999888888764
No 123
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=45.07 E-value=20 Score=17.86 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCCC
Q 033334 79 AAISAILEKKLSVPKS 94 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ 94 (121)
.++.+.+++++||+..
T Consensus 19 ~eLvk~leekfGVsaa 34 (40)
T 1dd4_C 19 AELVKKLEDKFGVTAA 34 (40)
T ss_dssp HHHHHHHHHHTCCCSC
T ss_pred HHHHHHHHHHHCCCcc
Confidence 4578889999999864
No 124
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=45.06 E-value=19 Score=21.65 Aligned_cols=26 Identities=4% Similarity=0.127 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 77 LSAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 77 ~~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
-...|.+.+++..|+|+++..+.|.-
T Consensus 50 TV~~lK~~Ia~k~Gip~~qQrLi~~G 75 (100)
T 1uh6_A 50 TIGDLKKLIAAQTGTRWNKIVLKKWY 75 (100)
T ss_dssp BHHHHHHHHHHHHCCCGGGCEEEETT
T ss_pred cHHHHHHHHHHHhCCCHHHEEEEECC
Confidence 34567778888899999999998753
No 125
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.84 E-value=28 Score=20.52 Aligned_cols=24 Identities=4% Similarity=0.214 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|+++++..+.|.
T Consensus 39 V~~LK~~I~~~~gip~~~qrLi~~ 62 (106)
T 1wx7_A 39 IQQLKEEISQRFKAHPDQLVLIFA 62 (106)
T ss_dssp HHHHHHHHHHHHTCCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 345666777788999999999874
No 126
>3lhe_A GNTR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.62A {Bacillus anthracis} SCOP: d.190.1.0 PDB: 3l5z_A*
Probab=44.60 E-value=51 Score=20.02 Aligned_cols=72 Identities=10% Similarity=0.089 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeC----CChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG----LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 26 ~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~----~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+++.|+.++..-.+.+. ++.+. ...|.++-+...... +..+ .+..-+.++|++.+|+...+..-.+.
T Consensus 23 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~ylp~~~~~~l~~~---~~~~sly~~l~~~~g~~~~~~~~~i~ 95 (143)
T 3lhe_A 23 EIIAEKLGISVGDFVYKII---RLRII-HSIPTIMEHTWMPISVIPGVEVS---VLEESIYSHIQNKLGLQVGTSVVRVK 95 (143)
T ss_dssp HHHHHHHTSCTTCEEEEEE---EEEEE-TTEEEEEEEEEEETTTSCCCC------------------CCCCEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEE---EEEEE-CCcEEEEEEEEeeHHHcCCCCHH---HhhhhHHHHHHHHcCCCeeEEEEEEE
Confidence 4578888977664444443 22222 346777766655433 3322 23467889999999998877766665
Q ss_pred eCC
Q 033334 102 DTK 104 (121)
Q Consensus 102 ~~~ 104 (121)
-..
T Consensus 96 a~~ 98 (143)
T 3lhe_A 96 GIR 98 (143)
T ss_dssp EEC
T ss_pred EEC
Confidence 543
No 127
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=44.40 E-value=24 Score=21.17 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 42 V~~lK~kI~~k~gip~~qQrLI~~ 65 (100)
T 1wju_A 42 GRELRSKIAETFGLQENYIKIVIN 65 (100)
T ss_dssp HHHHHHHHHHHTTCCSTTCEEEET
T ss_pred HHHHHHHHHHHHCcCHHHeEEEeC
Confidence 455777888999999999988765
No 128
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=44.11 E-value=23 Score=19.36 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=16.3
Q ss_pred HHHHHHHHhCCCCCeEEEEEE
Q 033334 81 ISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.+.+++..|+|+++..+.|.
T Consensus 29 lk~~i~~~~gi~~~~qrL~~~ 49 (79)
T 2uyz_B 29 LKESYCQRQGVPMNSLRFLFE 49 (79)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHCCCcccEEEEEC
Confidence 455566678999999999874
No 129
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=44.01 E-value=24 Score=20.71 Aligned_cols=24 Identities=4% Similarity=0.214 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|+|+++..+.|.
T Consensus 44 V~~LK~~I~~~~gip~~~QrLi~~ 67 (100)
T 1yqb_A 44 IQQLKEEISQRFKAHPDQLVLIFA 67 (100)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 345666777788999999999874
No 130
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=43.78 E-value=20 Score=20.33 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+.+++..|+|+++..+.|.
T Consensus 23 V~~LK~~I~~~~gip~~~qrLi~~ 46 (88)
T 4fbj_B 23 VERIKERVEEKEGIPPQQQRLIYS 46 (88)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHHCcChhHEEEEEC
Confidence 344666677788999999998884
No 131
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=43.73 E-value=21 Score=20.28 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 79 AAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
+.+.+.+++..|+|+++..+.|..
T Consensus 28 ~~LK~~I~~~~gip~~~qrL~~~G 51 (88)
T 2hj8_A 28 AHLKQQVSGLEGVQDDLFWLTFEG 51 (88)
T ss_dssp HHHHHHHHHHTCSCTTTEEEESSS
T ss_pred HHHHHHHHHHhCCChhHEEEEECC
Confidence 345666777889999999998753
No 132
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=43.71 E-value=25 Score=20.83 Aligned_cols=25 Identities=4% Similarity=0.117 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 77 LSAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 77 ~~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
-...|.+.+++..|+|+++..+.|.
T Consensus 43 TI~~LK~~I~~k~Gip~~qQrLif~ 67 (93)
T 3plu_A 43 SVGDFKKVLSLQIGTQPNKIVLQKG 67 (93)
T ss_dssp BHHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHHhCCCHHHEEEEeC
Confidence 3455677788889999999999874
No 133
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=43.63 E-value=25 Score=19.74 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.|.+.+.+..|++++.+.+.|.
T Consensus 32 ~kl~~~y~~~~gi~~~~~rf~fd 54 (79)
T 3a4r_A 32 KVLMSHYEEAMGLSGHKLSFFFD 54 (79)
T ss_dssp HHHHHHHHHHHTCTTCCCEEEET
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 44667777888999999888874
No 134
>2zws_A Neutral ceramidase; prism fold and beta-sandwich fold, hydrolase, lipid metaboli secreted; HET: PLM; 1.40A {Pseudomonas aeruginosa} PDB: 2zxc_A*
Probab=43.29 E-value=49 Score=26.45 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=37.7
Q ss_pred CCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEeCCCCCceeCC
Q 033334 55 EDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS--VPKSRFFIKFYDTKAHQSREHA 112 (121)
Q Consensus 55 ~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lg--i~~~ri~i~f~~~~~~~~g~~G 112 (121)
..+.+||.+.+.+ ++ ..+..++.+.|++.+| ++.++|.|...-- +-|-+|
T Consensus 53 ~~rvv~Vs~D~~~-~~----~~v~~~V~~~L~~~~g~~~~~~nV~isaTHT---HSgP~g 104 (646)
T 2zws_A 53 GRRLVYVNTDLGM-IF----QAVHLKVLARLKAKYPGVYDENNVMLAATHT---HSGPGG 104 (646)
T ss_dssp CCEEEEEEESSSC-CC----HHHHHHHHHHHHHHSTTTCCTTTEEEEECCB---SBEECC
T ss_pred CCEEEEEEECccc-CC----HHHHHHHHHHHHHHhCCCCChhHEEEEeeee---CCCCcc
Confidence 5889999998754 44 4566777778888999 9999999997763 444444
No 135
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=43.23 E-value=18 Score=24.40 Aligned_cols=90 Identities=10% Similarity=0.080 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecC-CC-------------CCe--eEEEEEeeeCCChhHHHHHHHH
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGG-TE-------------DPA--AYGELVSIGGLNPDVNKKLSAA 80 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg-~~-------------~p~--~~v~i~~~g~~~~e~~~~~~~~ 80 (121)
-+-++-.+++++.-+++.+.- =-++.+. +-.|.| ++ .-+ .-+.++.+..++ .-.-+..+
T Consensus 65 gDVl~HAi~DAlLGA~~lGDI--G~~FPdt-dp~~kga~S~~lL~~a~~l~~~~Gy~I~NvD~tiiaq~P--Ki~p~~~~ 139 (187)
T 3b6n_A 65 GDVIFHALVDALLGGMSCSDL--GTLFPDG-SPKYKNKNSLSFLRYARLLLYKRNYAIANVDIIVIAEVP--KISPIREE 139 (187)
T ss_dssp CCHHHHHHHHHHHHHTTCC------------------CCTHHHHHHHHHHHHHTTEEEEEEEEEEECSSS--CSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCC--cccCCCC-ChhhCCCCHHHHHHHHHHHHHHcCCEEEEEEEEEEeCCC--cchHHHHH
Confidence 367888999999998887542 2223322 222222 22 123 344556665443 22346677
Q ss_pred HHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCc
Q 033334 81 ISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQ 113 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~ 113 (121)
+.+.+.+.|++++++|.|.-.-. +..||-|+
T Consensus 140 m~~nia~~L~i~~~~VnVKAtT~--E~LGf~Gr 170 (187)
T 3b6n_A 140 IVRNISSALGISESQVSLKGKTH--EQLGPVGQ 170 (187)
T ss_dssp HHHHHHHHHTCCGGGEEEEEECC--TTCHHHHT
T ss_pred HHHHHHHHhCCCcceEEEEEecC--CCCCcCcC
Confidence 88899999999999999988765 55665543
No 136
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=43.23 E-value=25 Score=20.64 Aligned_cols=24 Identities=8% Similarity=0.218 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.|.+.+++..|+|+++..+.|.
T Consensus 47 V~~LK~~I~~~~gip~~~qrLi~~ 70 (101)
T 2klc_A 47 VQQFKEEISKRFKSHTDQLVLIFA 70 (101)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHHCcChhhEEEEEC
Confidence 344666677778999999999873
No 137
>3hma_A N-acetylmuramoyl-L-alanine amidase XLYA; endolysin, cell WALL biogenesis/degradation, compet hydrolase, secreted, sporulation; 2.20A {Bacillus subtilis} PDB: 3rdr_A 3hmb_A
Probab=43.06 E-value=39 Score=21.66 Aligned_cols=22 Identities=5% Similarity=-0.017 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhCCCCCeEE
Q 033334 76 KLSAAISAILEKKLSVPKSRFF 97 (121)
Q Consensus 76 ~~~~~i~~~l~~~lgi~~~ri~ 97 (121)
+-...|+..|.+..+|+++||.
T Consensus 110 ~a~~~L~~~l~~~y~i~~~~V~ 131 (157)
T 3hma_A 110 ANAQWLIKTLMAEHNISLANVV 131 (157)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEE
T ss_pred HHHHHHHHHHHHHcCCCHHHEE
Confidence 3456778888888999999864
No 138
>3re3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; structural genomics, center for structural genomics of infec diseases, csgid; 2.65A {Francisella tularensis subsp} SCOP: d.79.5.0
Probab=42.95 E-value=60 Score=21.31 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCC
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED 56 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~ 56 (121)
.....++.+.+|++++-|.+.|.|.-.+.+.+-|=|+.+
T Consensus 112 ~p~~~~m~~~la~~L~~~~~~V~vKAtT~E~LGf~Gr~E 150 (162)
T 3re3_A 112 LPHIEKMRACLANILEIQISQINIKATTTERLGFIGREE 150 (162)
T ss_dssp GGGHHHHHHHHHHHHTSCGGGEEEEEECCSSCHHHHTTS
T ss_pred hhHHHHHHHHHHHHHCCCCceEEEEEecCCCcCCCcccc
Confidence 456778999999999999999999999998888877664
No 139
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=42.93 E-value=26 Score=19.72 Aligned_cols=24 Identities=8% Similarity=0.224 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 28 V~~lK~~i~~~~gip~~~qrLi~~ 51 (90)
T 4dwf_A 28 VKEFKEHIAASVSIPSEKQRLIYQ 51 (90)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEC
Confidence 334566667778999999999885
No 140
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=42.93 E-value=30 Score=20.14 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
++|.+.+.+..|++++.+.+.|.
T Consensus 29 ~kl~~~y~~~~gi~~~~~rf~Fd 51 (91)
T 2io0_B 29 SKLMKAYCERQGLSMRQIRFRFD 51 (91)
T ss_dssp HHHHHHHHHHTTCCSTTEEEEET
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 34566677789999999999885
No 141
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=42.85 E-value=21 Score=20.58 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+.+++..|+|+++..+.|.
T Consensus 40 V~~LK~~I~~~~gip~~~qrLi~~ 63 (93)
T 2l7r_A 40 VAQIKAHVASLEGIAPEDQVVLLA 63 (93)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEET
T ss_pred HHHHHHHHHHHhCcChhHEEEEEC
Confidence 345666777888999999999874
No 142
>3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate SYNT; ssgcid, niaid, isoprene biosynthe lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3p0z_A* 3p10_A* 3q8h_A* 3qhd_A* 3ikf_A* 3ike_A*
Probab=42.68 E-value=58 Score=21.81 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCC
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED 56 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~ 56 (121)
.....++.+.+|++++-|.+.|.|.-.+.+.+-|=|+.+
T Consensus 129 ~p~~~~mr~~la~~L~i~~~~VnVKATT~E~LGf~Gr~E 167 (183)
T 3f0d_A 129 APHIDAMRANIAADLDLPLDRVNVKAKTNEKLGYLGRGE 167 (183)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTS
T ss_pred hhHHHHHHHHHHHHHCCCcceEEEEEecCCCCccCcCcc
Confidence 456789999999999999999999999999888888764
No 143
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=42.00 E-value=22 Score=20.19 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 40 V~~LK~~I~~~~gip~~~qrL~~~ 63 (91)
T 3v6c_B 40 IENVKAKIQDKEGIPPDQQRLIFA 63 (91)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHhhhCCChhhEEEEEC
Confidence 445667777888999999998884
No 144
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=41.66 E-value=17 Score=20.29 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 35 V~~lK~~i~~~~gip~~~qrL~~~ 58 (88)
T 3dbh_I 35 VERIKERVEEKEGIPPQQQRLIYS 58 (88)
T ss_dssp HHHHHHHHHHHHCCCGGGCCEEET
T ss_pred HHHHHHHHHHHHCcCHHHEEEEEC
Confidence 455667777788999999988874
No 145
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=41.56 E-value=29 Score=19.81 Aligned_cols=22 Identities=14% Similarity=0.058 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
...+.+.+++..|||++|..+.
T Consensus 30 V~~lK~~I~~~~gip~~~QkLi 51 (90)
T 1v5t_A 30 VLDLKQFLKTLTGVLPERQKLL 51 (90)
T ss_dssp HHHHHHHHHHHTCCCTTTCEEE
T ss_pred HHHHHHHHHHHHCcCHHHeEEE
Confidence 4567788888999999999998
No 146
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=41.38 E-value=23 Score=20.57 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|+|+++..+.|.
T Consensus 45 V~~LK~~I~~~~gip~~~qrLi~~ 68 (98)
T 4hcn_B 45 IDNVKSKIQDKEGIPPDQQRLIFA 68 (98)
T ss_dssp HHHHHHHHHHHHCCCGGGCEEEET
T ss_pred HHHHHHHHHHHhCCChhHEEEEEC
Confidence 455677777888999999998884
No 147
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, Pro structure initiative, PSI; 2.00A {Thermotoga maritima} SCOP: a.28.1.1
Probab=41.37 E-value=25 Score=20.76 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 72 DVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 72 e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
-.++++...+.+.+.+.++++++.+
T Consensus 13 ~~~~~i~~~l~~ila~~l~v~~~~I 37 (100)
T 1vku_A 13 MERKKLIAKFVEIASEKMGKDLETV 37 (100)
T ss_dssp THHHHHHHHHHHHHHHTTCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHC
Confidence 3567788999999999999988754
No 148
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=41.07 E-value=27 Score=20.46 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.|.+.+.+..|++++.+.+.|.
T Consensus 31 ~kl~~~y~~~~gi~~~~~rf~Fd 53 (94)
T 2io1_B 31 SKLMKAYCERQGLSMRQIRFRFD 53 (94)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 34667777889999999999885
No 149
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=40.89 E-value=21 Score=29.04 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEEeCC--CCCceeCCc
Q 033334 76 KLSAAISAILEKKLSVPKSRFFIKFYDTK--AHQSREHAQ 113 (121)
Q Consensus 76 ~~~~~i~~~l~~~lgi~~~ri~i~f~~~~--~~~~g~~G~ 113 (121)
-..-.++....+.||||.++|.|..-|.+ |..+|-.|+
T Consensus 484 G~~T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~aS 523 (769)
T 1rm6_A 484 GSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSS 523 (769)
T ss_dssp CHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTT
T ss_pred CHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCccc
Confidence 34556788899999999999999998875 344444443
No 150
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=40.48 E-value=19 Score=20.85 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
...+.+.+++..|||+++..+.|..
T Consensus 31 V~~lK~ki~~~~gip~~~qrL~~~~ 55 (95)
T 1v6e_A 31 IAEFKCKLELVVGSPASCMELELYG 55 (95)
T ss_dssp HHHHHHHHHHHTCSCTTTCBCEEEC
T ss_pred HHHHHHHHHHHHCCCHHHeEEEEeC
Confidence 3457778888899999999998874
No 151
>3b6n_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; malaria isoprenoid biosynthesis and prenylation pathways ISPF; 2.26A {Plasmodium vivax sai-1}
Probab=40.46 E-value=82 Score=21.16 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCC
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTED 56 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~ 56 (121)
-.-...++.+.+|++++-+++.|.|.-.+.+.+-|=|+.+
T Consensus 133 i~p~~~~m~~nia~~L~i~~~~VnVKAtT~E~LGf~Gr~e 172 (187)
T 3b6n_A 133 ISPIREEIVRNISSALGISESQVSLKGKTHEQLGPVGQKK 172 (187)
T ss_dssp SHHHHHHHHHHHHHHHTCCGGGEEEEEECCTTCHHHHTTS
T ss_pred chHHHHHHHHHHHHHhCCCcceEEEEEecCCCCCcCcCCC
Confidence 3578889999999999999999999999998888888664
No 152
>2z5b_A Protein YPL144W, DMP1; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_A
Probab=39.69 E-value=75 Score=20.54 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=35.0
Q ss_pred ChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhC
Q 033334 16 DTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS 90 (121)
Q Consensus 16 ~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lg 90 (121)
...+|...+++++++-+++|- |+-...... .. |....++.-+..+++.+.+.++||
T Consensus 95 ~~~D~a~rlAkiLarR~~~P~-YVg~S~~~s--------~~----------g~m~veeeme~lkk~Vd~v~~~~~ 150 (151)
T 2z5b_A 95 RIRDMARHMATIISERFNRPC-YVTWSSLPS--------ED----------PSMLVANHLYILKKCLDLLKTELG 150 (151)
T ss_dssp HHHHHHHHHHHHHHHHHTSCE-EEEEEECTT--------CC----------THHHHHTHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHhCCCe-EEEeecccc--------cc----------ccchHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999999872 333222221 00 101123445555788899988887
No 153
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=39.22 E-value=34 Score=20.62 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEE
Q 033334 77 LSAAISAILEKKLSVPKSRFFIKF 100 (121)
Q Consensus 77 ~~~~i~~~l~~~lgi~~~ri~i~f 100 (121)
-+.++.++|.+..||+++|+.+.-
T Consensus 70 RA~aV~~~L~~~~Gi~~~ri~~~g 93 (123)
T 3td3_A 70 RANSVKSALVNEYNVDASRLSTQG 93 (123)
T ss_dssp HHHHHHHHHHHHSCCCGGGEEEEE
T ss_pred HHHHHHHHHHHhhCCCHHHEEEEE
Confidence 346778888888999999987653
No 154
>2w9j_A Signal recognition particle subunit SRP14; radiation-induced phasing, RNA-BI ribonucleoprotein, signaling P arsenic, ALU-domain; 2.60A {Schizosaccharomyces pombe}
Probab=39.06 E-value=43 Score=19.72 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeC---CceeeecCCCCCeeEEEEEeee------CCChhHHHHHHHHHHHHHHH
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKG---SVPMSFGGTEDPAAYGELVSIG------GLNPDVNKKLSAAISAILEK 87 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~---~~~~~~gg~~~p~~~v~i~~~g------~~~~e~~~~~~~~i~~~l~~ 87 (121)
.++|+.+|++++...-++....|.++... ... .+.+.| ++|..+.-. ..++++-.+|.++.++.+..
T Consensus 5 nd~FL~~L~~lf~~~~~~~~gSV~lT~KR~~~~~~---~~~~~p-cLiRAt~gkK~KiSTvV~~~~l~~F~~~Y~~v~K~ 80 (91)
T 2w9j_A 5 NEEFLKKLTDLLQTHQSKGTGSVYLSQKXNPVDEG---EGSSAS-VLIRAKSGAAEKISTVVELDYFTDFFQSYAEVXKG 80 (91)
T ss_dssp HHHHHHHHHHHHHCC-------CCCEEEEEEECC--------CE-EEEEEECTTSCEEEEEEEGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCceEEEEEEecCCCcc---CCCCCC-EEEEEecCCCCEEEEEECHHHHHHHHHHHHHHHHh
Confidence 67999999999988665555555554321 111 234556 566654311 13478889999999998876
Q ss_pred Hh
Q 033334 88 KL 89 (121)
Q Consensus 88 ~l 89 (121)
.+
T Consensus 81 ~M 82 (91)
T 2w9j_A 81 QI 82 (91)
T ss_dssp HH
T ss_pred CC
Confidence 65
No 155
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=38.63 E-value=61 Score=21.01 Aligned_cols=32 Identities=9% Similarity=0.214 Sum_probs=21.1
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
|+++...+.-+++.++ .+.+|++.+++...-+
T Consensus 142 R~~~l~~e~~~~f~~~-~~~~G~~~~~ii~~~q 173 (190)
T 3s26_A 142 RTKELSPELKERFTRF-AKSLGLKDDNIIFSVP 173 (190)
T ss_dssp SSSCCCHHHHHHHHHH-HHHTTCCGGGEEEEEC
T ss_pred CCCCCCHHHHHHHHHH-HHHcCCCHHHEEECCC
Confidence 5555555555555554 4568999999877654
No 156
>3ddv_A Transcriptional regulator (GNTR family); structure genomics, MCSG, structural genomics, protein structure initiative; 2.65A {Enterococcus faecalis} SCOP: d.190.1.2
Probab=38.59 E-value=66 Score=19.55 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=28.0
Q ss_pred HHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChh-HHHHHHHHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 27 TVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPD-VNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 27 ~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e-~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
.+++.|+.++..-.+.+. ++.+. ...|.++-+......+-+. ....+..-+.++|++.+|++..+..-.+.-.
T Consensus 21 ~ia~~L~l~~g~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~sly~~l~~~~g~~~~~~~~~i~a~ 94 (145)
T 3ddv_A 21 SEMEKLQLGPEDSILRME---RIRFA-DDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQTISAV 94 (145)
T ss_dssp HHHHHHTCCTTSCEEEEE---EEEEE-TTEEEEEEEEEEEGGGC----------------------CCCCEEEEEEEE
T ss_pred HHHHhCCcCCCCEEEEEE---EEEee-CCCcEEEEEEEeeHHHcCCcchhHhhhhHHHHHHHhhCCceEEEEEEEEEE
Confidence 467788876653233332 22222 3467777666554432221 1123445788889888888887766655443
No 157
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=38.23 E-value=46 Score=20.04 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=19.8
Q ss_pred hhHHHHHH----HHHHHHHHHHhCCCCCeEEEE
Q 033334 71 PDVNKKLS----AAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 71 ~e~~~~~~----~~i~~~l~~~lgi~~~ri~i~ 99 (121)
.+.|.+++ .++.++|.+ .||+++|+.+.
T Consensus 52 ~~~N~~LS~~RA~aV~~~L~~-~Gi~~~ri~~~ 83 (118)
T 2hqs_H 52 PEYNISLGERRANAVKMYLQG-KGVSADQISIV 83 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHEEEE
Confidence 34555554 477777777 49999998765
No 158
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=37.94 E-value=67 Score=19.59 Aligned_cols=48 Identities=17% Similarity=0.298 Sum_probs=32.4
Q ss_pred CCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCC
Q 033334 56 DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (121)
Q Consensus 56 ~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~ 104 (121)
.+-.++.+...|.++.+.-+++...+-+.+++. +.++-|+++.+.+.+
T Consensus 17 ~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~~-~~~~i~lL~~~~~f~ 64 (127)
T 2ook_A 17 ESVFFVTLKAIGTLTHEDYLVITPMLEGALSQV-DQPKVSLFLDATELD 64 (127)
T ss_dssp TTEEEEEEEEEEEECHHHHHHHHHHHHHHHTTC-CCSSCCEEEEEEEEE
T ss_pred CCCCEEEEEEeeeECHHHHHHHHHHHHHHHhhc-cCCCEEEEEEccCCC
Confidence 355778899999999888666555554444431 235667888888763
No 159
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=37.84 E-value=61 Score=18.95 Aligned_cols=75 Identities=8% Similarity=0.159 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEee--eC-CChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 20 ILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSI--GG-LNPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 20 ~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~--g~-~~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
|...+-+.+.+-+.+ ...--|.++-. ...+-|.|.+- |- ++. +-+-.++|...|++.++.+..++
T Consensus 8 ~~~~IR~~i~k~l~~-aGis~IeIeR~---------~~~i~I~I~tarPg~vIGk--kG~~Ie~L~~~l~k~~~~~~~~v 75 (92)
T 1wh9_A 8 FKAELNEFLTRELAE-DGYSGVEVRVT---------PTRTEIIILATRTQNVLGE--KGRRIRELTAVVQKRFGFPEGSV 75 (92)
T ss_dssp HHHHHHHHHHHHTTT-TTEEEEEEEEC---------SSCEEEEEEESCHHHHHCG--GGHHHHHHHHHHHHHHCCCTTSE
T ss_pred HHHHHHHHHHHHHHH-CceeeEEEEEC---------CCeEEEEEEeCCCceEEcC--CcHHHHHHHHHHHHHhCCCCCeE
Confidence 455666777776665 23334444321 12234444322 11 121 23446788999999999988899
Q ss_pred EEEEEeCCCC
Q 033334 97 FIKFYDTKAH 106 (121)
Q Consensus 97 ~i~f~~~~~~ 106 (121)
.|++.++...
T Consensus 76 ~I~I~eV~~P 85 (92)
T 1wh9_A 76 ELYAEKVATR 85 (92)
T ss_dssp EEEEEECCCS
T ss_pred EEEEEEecCC
Confidence 9999998654
No 160
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=37.79 E-value=32 Score=19.98 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.|.+.+.+..|++++.+.+.|.
T Consensus 41 ~kl~~~y~~~~gi~~~~~rf~fd 63 (93)
T 2d07_B 41 SKLMKAYCERQGLSMRQIRFRFD 63 (93)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCccceEEEEC
Confidence 44667778889999999998885
No 161
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=37.56 E-value=32 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=16.8
Q ss_pred HHHHHHHHhCCCCCeEEEEEE
Q 033334 81 ISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~ 101 (121)
|.+.+++..|+|+++..+.|.
T Consensus 47 lK~~i~~~~gip~~~qrLif~ 67 (97)
T 1wyw_B 47 LKESYCQRQGVPMNSLRFLFE 67 (97)
T ss_dssp HHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHCCChhhEEEEEC
Confidence 555667778999999999884
No 162
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=37.43 E-value=17 Score=29.65 Aligned_cols=32 Identities=16% Similarity=0.176 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCC-ceeCC
Q 033334 74 NKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQ-SREHA 112 (121)
Q Consensus 74 ~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~-~g~~G 112 (121)
|++...-.-++| +.||++++||.- .+| |..+|
T Consensus 163 K~eai~~~~e~l-~~~g~~~~~i~~------~dnfW~~gG 195 (739)
T 2ztg_A 163 KNETVAYCTELL-NELGVKKEDIVY------KEEPWAGGG 195 (739)
T ss_dssp HHHHHHHHHHHH-HHHTCCGGGCEE------EEEEEEETT
T ss_pred HHHHHHHHHHHH-HHhCCCHHHeee------ccCcccCCC
Confidence 444555556777 889999999854 245 76553
No 163
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=37.05 E-value=43 Score=19.87 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+.+++..|+|+++..+.|.
T Consensus 58 V~~LK~~I~~~~gip~~~qrLi~~ 81 (111)
T 2ojr_A 58 IENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp HHHHHHHHHHHHCCCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcCcccEEEEEC
Confidence 455677778889999999999884
No 164
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=36.55 E-value=29 Score=21.25 Aligned_cols=44 Identities=11% Similarity=0.223 Sum_probs=28.2
Q ss_pred CeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEeC
Q 033334 57 PAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK--SRFFIKFYDT 103 (121)
Q Consensus 57 p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~--~ri~i~f~~~ 103 (121)
+-.++.+...|.++.+.-+++...+-+.++ +..+ =++++.+.+.
T Consensus 18 ~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~---~~~~~~i~ll~~~~~f 63 (126)
T 2q3l_A 18 DDFYLAFKAVGKLTHEDYEQMTPLLESALA---GIKTPEIVALIDITEL 63 (126)
T ss_dssp TEEEEEEEEEEEECHHHHHHHHHHHHHHTT---TCCSSCEEEEEEEEEE
T ss_pred CCCEEEEEEEeeECHHHHHHHHHHHHHHHH---hCCCceEEEEEEecCC
Confidence 557788999999998886655444443333 2334 5677766654
No 165
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=36.33 E-value=24 Score=20.68 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+++++..+.|.
T Consensus 34 V~~LK~~I~~~~gip~~~qrL~~~ 57 (102)
T 1v5o_A 34 LSNFRVLCELESGVPAEEAQIVYM 57 (102)
T ss_dssp HHHHHHHHHHHTCCCGGGBCEEET
T ss_pred HHHHHHHHHHHHCcChHHeEEEEC
Confidence 345777788889999999988874
No 166
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=36.29 E-value=70 Score=19.16 Aligned_cols=34 Identities=12% Similarity=0.066 Sum_probs=28.0
Q ss_pred eEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCC
Q 033334 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPK 93 (121)
Q Consensus 59 ~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~ 93 (121)
.-+++... ..|-.+||++.+-|.+.+.+.+++.-
T Consensus 8 l~~~l~l~-~~SLKeKR~vvksl~~rlr~rFnVSv 41 (102)
T 1j27_A 8 YTARLETP-ARSLKEKRALIKPALERLKARFPVSA 41 (102)
T ss_dssp EEEEEECC-CSSHHHHHHHHHHHHHHHHHHSSCEE
T ss_pred EEEEEEEe-CCChHHhHHHHHHHHHHHhhcCCeEE
Confidence 34555666 78899999999999999999998763
No 167
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=36.22 E-value=22 Score=29.01 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEEeCC--CCCceeCCce
Q 033334 76 KLSAAISAILEKKLSVPKSRFFIKFYDTK--AHQSREHAQC 114 (121)
Q Consensus 76 ~~~~~i~~~l~~~lgi~~~ri~i~f~~~~--~~~~g~~G~~ 114 (121)
-..-.+.....+.||||.++|.|...|.+ |..+|..|+.
T Consensus 491 G~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aSr 531 (777)
T 2w3s_B 491 GLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASS 531 (777)
T ss_dssp CHHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCTTC
T ss_pred ChhHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCccch
Confidence 34556788899999999999999998874 4455555543
No 168
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=36.21 E-value=37 Score=20.42 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..|.+.+++..|+|+++..+.|.
T Consensus 33 ~~LK~~I~~~~gip~~~qrLi~~ 55 (114)
T 2kdi_A 33 DNVKSKIQDKEGIPPDQQRLIWA 55 (114)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCcChHHEEEEEC
Confidence 44666677788999999999874
No 169
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=35.93 E-value=45 Score=20.45 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|+++++..+.|.
T Consensus 54 V~~LK~~I~~~~gip~~~QrLi~~ 77 (125)
T 1j8c_A 54 VQQFKEAISKRFKSQTDQLVLIFA 77 (125)
T ss_dssp HHHHHHHHHHHHCSCSSSEEEEET
T ss_pred HHHHHHHHHHHHCcCcceEEEEEC
Confidence 455677777888999999999874
No 170
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=35.80 E-value=38 Score=20.19 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.|.+.+++..|+|+++..+.|.
T Consensus 58 V~~LK~~I~~~~gip~~~QrLi~~ 81 (111)
T 3vdz_A 58 IENVKAKIQDKEGIPPDQQRLIFA 81 (111)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHhCCChHHEEEEEC
Confidence 445666777788999999999885
No 171
>3pa8_A Toxin B; CLAN CD cysteine protease, protease, toxin-peptide in complex; HET: 621 IHP; 2.00A {Clostridium difficile} PDB: 3pee_B*
Probab=35.40 E-value=1.2e+02 Score=21.43 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=49.0
Q ss_pred HHHHHHHHhCC-CCcEEEEEEe--C-Cceeeec------------CCCC---CeeEEEEEeeeC-CCh--------hHHH
Q 033334 24 ATSTVANIIGK-PEAYVMIVLK--G-SVPMSFG------------GTED---PAAYGELVSIGG-LNP--------DVNK 75 (121)
Q Consensus 24 l~~~~~~~~~k-p~~~i~v~v~--~-~~~~~~g------------g~~~---p~~~v~i~~~g~-~~~--------e~~~ 75 (121)
.+++.|.++|| |...+.|.+. + +...++. |.+. ...-+.+..+|. ++. -.-.
T Consensus 47 v~eAAanL~gKHP~~SvlvQld~~d~~~~Y~v~~~d~~i~~~d~yg~P~~L~~~gkiRwqlVGHGr~e~n~~~fag~sad 126 (254)
T 3pa8_A 47 SYEAACNLFAKTPYDSVLFQKNIEDSEIAYYYNPGDGEIQEIDKYKIPSIISDRPKIKLTFIGHGKDEFNTDIFAGFDVD 126 (254)
T ss_dssp HHHHHHHHHHHCTTTEEEEETTSTTCCEEEEEETTTTEEEEEETTCCCTTTTTCSEEEEEEECCCCSSCCSSEETTEEHH
T ss_pred HHHHHHHHHhcCCCCcEEEEeccCCCCceEEEeccccccccccccCCHhHhccCCceEEEEEecCcCCCCcceeccCCHH
Confidence 45677777776 5578888852 2 2234442 2221 224577777763 331 1234
Q ss_pred HHHHHHHHHHHHHh-CCCCCeEEEEEEeCCCCC
Q 033334 76 KLSAAISAILEKKL-SVPKSRFFIKFYDTKAHQ 107 (121)
Q Consensus 76 ~~~~~i~~~l~~~l-gi~~~ri~i~f~~~~~~~ 107 (121)
+++..|..+..+.- .+.|..++|++.-++--.
T Consensus 127 eLa~~L~~f~~~~~~~~~pK~i~IsLvGCsL~s 159 (254)
T 3pa8_A 127 SLSTEIEAAIDLAKEDISPKSIEINLLGCNMFS 159 (254)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEEESSSCCC
T ss_pred HHHHHHHHHHHHHhhccCCCCceEEEEeecccC
Confidence 56776666655433 678899999998875433
No 172
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=35.09 E-value=36 Score=18.52 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCeE
Q 033334 75 KKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri 96 (121)
.+..+.+.+.+.+.+|++++.+
T Consensus 5 ~~i~~~l~~ii~~~l~~~~~~i 26 (81)
T 2lol_A 5 DKIEQKVIEMVAEKLNKDKAII 26 (81)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTC
T ss_pred HHHHHHHHHHHHHHHCCChhhC
Confidence 4566778888899999876653
No 173
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=35.05 E-value=65 Score=22.65 Aligned_cols=41 Identities=20% Similarity=0.265 Sum_probs=28.9
Q ss_pred eeEEEEEe--eeC-CChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 58 AAYGELVS--IGG-LNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 58 ~~~v~i~~--~g~-~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
+.+|-.+. -|. .+.+.+.++.+++.+.+. +.||+++||++-
T Consensus 126 ~~vv~m~~d~~G~p~t~~~~~~~l~~~~~~a~-~~Gi~~~~IilD 169 (271)
T 2yci_X 126 AAIIGLTMNEKGVPKDANDRSQLAMELVANAD-AHGIPMTELYID 169 (271)
T ss_dssp CEEEEESCBTTBCCCSHHHHHHHHHHHHHHHH-HTTCCGGGEEEE
T ss_pred CCEEEEecCCCCCCCCHHHHHHHHHHHHHHHH-HCCCCcccEEEe
Confidence 44544444 222 356778888888888887 689999999874
No 174
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=34.90 E-value=24 Score=20.25 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|+|+++..+.|.
T Consensus 39 V~~LK~~I~~~~gip~~~qrL~~~ 62 (96)
T 1wx8_A 39 VRRFKKQISKYLHCNADRLVLIFT 62 (96)
T ss_dssp HHHHHHHHHHHTCSCTTTBCCEET
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEC
Confidence 345666777788999999988874
No 175
>3d2y_A N-acetylmuramoyl-L-alanine amidase AMID; zinc amidase, PGRP, peptidoglycan recognizing protein, AMPD, acetylmuramyl-L-alanine amidase; HET: AH0; 1.75A {Escherichia coli} PDB: 2bh7_A 2wkx_A 2bgx_A* 3d2z_A
Probab=33.59 E-value=56 Score=22.83 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
.+++|.+++.+. +..|.+..+|++++|.-.
T Consensus 122 ~t~aQ~~al~~L-~~~L~~~y~i~~~~V~gH 151 (261)
T 3d2y_A 122 FEPAQIQALIPL-AKDIIARYHIKPENVVAH 151 (261)
T ss_dssp CCHHHHHHHHHH-HHHHHHHHTCCGGGEEEH
T ss_pred CCHHHHHHHHHH-HHHHHHHcCCCcccEecc
Confidence 457777777664 555555669999987654
No 176
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=33.40 E-value=27 Score=21.86 Aligned_cols=55 Identities=13% Similarity=0.223 Sum_probs=30.9
Q ss_pred EEEEEEeCCceeeec-CC----CCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 38 YVMIVLKGSVPMSFG-GT----EDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 38 ~i~v~v~~~~~~~~g-g~----~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
|+.|.+.....|.-- |- .++..+..++... ..-...+.+.+.+.||+|++++.+=
T Consensus 30 Y~~vkv~t~~~f~~~~gfDL~~~~~~~~~~~rv~k-------~~~~~~~~~~va~~lg~~~~~~RlW 89 (130)
T 2kvr_A 30 YMQVQIVAEDQFCGHQGNDMYDEEKVKYTVFKVLK-------NSSLAEFVQSLSQTMGFPQDQIRLW 89 (130)
T ss_dssp CCEEEEECCSTTTTCCCCSSCCSSSCSCEEEECCT-------TSBHHHHHHHHHHHHCCCGGGCEEE
T ss_pred eeEEEEecHHHHHhccCccCcCCccCCcceEEEec-------cCcHHHHHHHHHHHhCCCcccEEEE
Confidence 777877655444422 31 2333333333222 2223346788889999999876654
No 177
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=33.26 E-value=45 Score=18.94 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHh--CCCCCeEEEEEE
Q 033334 78 SAAISAILEKKL--SVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~l--gi~~~ri~i~f~ 101 (121)
...+.+.+++.. |+++++..+.|.
T Consensus 32 V~~lK~~I~~~~~~~i~~~~QrLi~~ 57 (93)
T 1wgd_A 32 VGHLKAHLSRVYPERPRPEDQRLIYS 57 (93)
T ss_dssp HHHHHHHHHHHSTTCCCTTTCEEEET
T ss_pred HHHHHHHHHHHhcCCCChHHeEEEEC
Confidence 455677778888 999999999874
No 178
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.03 E-value=33 Score=20.18 Aligned_cols=24 Identities=8% Similarity=0.145 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+.+++..|+|+++..+.|.
T Consensus 50 V~~LK~~I~~~~gip~~~QrLi~~ 73 (101)
T 3m63_B 50 VLQFKEAINKANGIPVANQRLIYS 73 (101)
T ss_dssp HHHHHHHHHHHHSCCSTTCCEEET
T ss_pred HHHHHHHHHHHHCcChHHEEEEEC
Confidence 455677778888999999988874
No 179
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=32.89 E-value=41 Score=18.23 Aligned_cols=22 Identities=14% Similarity=0.380 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCeE
Q 033334 75 KKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri 96 (121)
......+.+.+.+.+|++++.+
T Consensus 6 ~~i~~~l~~~i~~~l~~~~~~i 27 (82)
T 2cnr_A 6 EEIVAGLAEIVNEIAGIPVEDV 27 (82)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHC
Confidence 4566788899999999887654
No 180
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=32.88 E-value=33 Score=28.10 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEEeCC--CCCceeCCc
Q 033334 76 KLSAAISAILEKKLSVPKSRFFIKFYDTK--AHQSREHAQ 113 (121)
Q Consensus 76 ~~~~~i~~~l~~~lgi~~~ri~i~f~~~~--~~~~g~~G~ 113 (121)
-..-.+.....+.||||.++|.|..-|.+ |..+|..|+
T Consensus 531 G~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aS 570 (809)
T 1n62_B 531 GHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGS 570 (809)
T ss_dssp CHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTT
T ss_pred CHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCcccc
Confidence 34556788889999999999999998764 333444443
No 181
>2pa8_L DNA-directed RNA polymerase subunit L; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_L 3hkz_L 2waq_L 2wb1_L 2y0s_L
Probab=32.81 E-value=55 Score=19.12 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=17.3
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~ 29 (121)
|.++|+|..+.++ .++|.+++.++..
T Consensus 53 ~~lrIqT~~~~~p--~~al~~a~~~l~~ 78 (92)
T 2pa8_L 53 IIVKILTDGSITP--KDALLKAIENIRG 78 (92)
T ss_dssp EEEEEEECSSSCH--HHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 5789999876654 3566666655543
No 182
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.46 E-value=43 Score=19.32 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
...+...|++.+|+|+.+..+.+.+
T Consensus 35 V~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 35 VQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp HHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred HHHHHHHHHHHHCCChhHeEEEEEc
Confidence 3447788999999999999998874
No 183
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=32.33 E-value=95 Score=19.50 Aligned_cols=66 Identities=18% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCCh----hHHHHHHHHHHHHHHHHh
Q 033334 23 EATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNP----DVNKKLSAAISAILEKKL 89 (121)
Q Consensus 23 ~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~----e~~~~~~~~i~~~l~~~l 89 (121)
..++.+++.+|.++-..+++--++..+++-.-.+...++-+.--+ .+- =.-++.+++|.+.+.+.+
T Consensus 65 ~a~~~la~~Lge~~~~~l~~eGe~~~i~i~~vg~~~iLvvifd~~-~~LG~Vrl~~kka~~~l~~il~~~~ 134 (136)
T 3t12_B 65 AATQALAKLLGEARFQEEVHQGERMGLYVDEAGEHALLVLVFDET-APLGKVKLHGKAAAAALAAIAEEAL 134 (136)
T ss_dssp HHHHHHHHHTTCSCCCCEEEECSSCEEEEEESSTTEEEEEEECTT-SCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHCCCchhHheEEcCcCCEEEEEcCCCEEEEEEeCCC-CCceEeeehHHHHHHHHHHHHHHHh
Confidence 457889999998876555555566677777666666666554322 332 233445555666665543
No 184
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=32.30 E-value=34 Score=20.24 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 24 V~~LK~~I~~~~gip~~~QrLi~~ 47 (106)
T 3m62_B 24 ILETKTKLAQSISCEESQIKLIYS 47 (106)
T ss_dssp HHHHHHHHHHTTTSCGGGCEEEET
T ss_pred HHHHHHHHHHHHCCChhhEEEEEC
Confidence 345667778888999999998875
No 185
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=32.24 E-value=28 Score=19.65 Aligned_cols=24 Identities=4% Similarity=-0.087 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..||++++..+.+-
T Consensus 23 v~~Lk~~I~~~~gi~~~~qrL~~~ 46 (86)
T 2kzr_A 23 LRELQGQIAAITGIAPGSQRILVG 46 (86)
T ss_dssp HHHHHHHHHHHTCCCTTTCCCEES
T ss_pred HHHHHHHHHHHhCCCccceEEEeC
Confidence 456777888889999888888763
No 186
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=31.90 E-value=35 Score=18.36 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCeE
Q 033334 75 KKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri 96 (121)
.++...+.+.+.+.+|++++.+
T Consensus 4 ~~i~~~l~~~i~~~l~~~~~~i 25 (80)
T 1x3o_A 4 QEIFEKVKAVIADKLQVEPEKV 25 (80)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHhCCCHHHC
Confidence 4567788889999999886654
No 187
>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}
Probab=31.90 E-value=1.3e+02 Score=20.97 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=49.6
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHH
Q 033334 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAIS 82 (121)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~ 82 (121)
+..|+.|-+....-..++..+|.+++.++-..|.-++.|.--.+..|+-|+.-. .....+.+....+...+.
T Consensus 34 Va~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~--------~~~~~~~~~~~~~~~~~~ 105 (277)
T 4di1_A 34 LATLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMP--------ELRTLNAPEADTAARVRL 105 (277)
T ss_dssp EEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHH--------HHHTCCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcc--------cccccChHHHHHHHHHHH
Confidence 566788877324335688999999998887766666665444455566554321 112234455556666666
Q ss_pred HHHHHHhCCCC
Q 033334 83 AILEKKLSVPK 93 (121)
Q Consensus 83 ~~l~~~lgi~~ 93 (121)
+++......|+
T Consensus 106 ~~~~~l~~~~k 116 (277)
T 4di1_A 106 EAIDAVAAIPK 116 (277)
T ss_dssp HHHHHHHHCSS
T ss_pred HHHHHHHhCCC
Confidence 66665555554
No 188
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.53 E-value=28 Score=20.16 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=20.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 70 NPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 70 ~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
++-.+.++.+.+.+.+.+.++++++.+
T Consensus 9 ~~m~~~~i~~~l~~~l~~~l~~~~~~i 35 (99)
T 2dnw_A 9 PPLTLEGIQDRVLYVLKLYDKIDPEKL 35 (99)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTSCTTTC
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCHhhC
Confidence 334456688889999999999987654
No 189
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=31.49 E-value=36 Score=18.66 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCeE
Q 033334 75 KKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri 96 (121)
..+.+.+.+.+.+.+|++++.+
T Consensus 4 ~~i~~~l~~ii~~~l~~~~~~i 25 (81)
T 3gzm_A 4 KSTFDDIKKIISKQLSVEEDKI 25 (81)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGC
T ss_pred HHHHHHHHHHHHHHhCcCHHHC
Confidence 4567788888999999887654
No 190
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=31.03 E-value=38 Score=27.70 Aligned_cols=52 Identities=6% Similarity=-0.086 Sum_probs=31.8
Q ss_pred CCeeEEEE---EeeeCCC--hhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCC
Q 033334 56 DPAAYGEL---VSIGGLN--PDVNKKLSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHA 112 (121)
Q Consensus 56 ~p~~~v~i---~~~g~~~--~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G 112 (121)
--..|+|. .|.|..+ .=-|++-+.-.-++|.+.||+|++|++- .| .-|..+|
T Consensus 140 rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~~--~d---NfW~~GG 196 (752)
T 2zze_A 140 RHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDITF--KE---NPWAGGG 196 (752)
T ss_dssp SCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEEE--EE---CCEEETT
T ss_pred cchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhheee--cc---CcccCCC
Confidence 34455555 3566221 2234455555678899999999999953 33 4677654
No 191
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=31.00 E-value=32 Score=28.17 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEEeCC
Q 033334 76 KLSAAISAILEKKLSVPKSRFFIKFYDTK 104 (121)
Q Consensus 76 ~~~~~i~~~l~~~lgi~~~ri~i~f~~~~ 104 (121)
-..-.++....+.||||.++|.|...|.+
T Consensus 525 G~~T~~aQiaAe~LGi~~e~V~v~~~DT~ 553 (803)
T 1ffv_B 525 GHQTTYAQIIATELGIPSEVIQVEEGDTS 553 (803)
T ss_dssp CHHHHHHHHHHHHHTCCGGGEEEECCBTT
T ss_pred CHHHHHHHHHHHHHCCCHHHEEEecCCCC
Confidence 34556788899999999999999998764
No 192
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.79 E-value=46 Score=19.54 Aligned_cols=24 Identities=13% Similarity=-0.089 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|+++++..+.|.
T Consensus 46 V~~LK~~I~~~~gip~~~qrLi~~ 69 (106)
T 1ttn_A 46 VFHMKRRLHAAEGVEPGSQRWFFS 69 (106)
T ss_dssp HHHHHHHHHHTTCCCSTTCEEEET
T ss_pred HHHHHHHHHHHHCcCcccEEEEEC
Confidence 455777788889999999998874
No 193
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.55 E-value=28 Score=20.25 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|||++|..+.|.
T Consensus 30 V~~lK~~I~~~tgip~~~QkLi~~ 53 (96)
T 1wgg_A 30 PMVFKAQLFALTGVQPARQKVMVK 53 (96)
T ss_dssp HHHHHHHHHHHTCCCTTTSCCEET
T ss_pred HHHHHHHHHHHHCcCHHHeEEEEC
Confidence 355777888889999999888873
No 194
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=30.49 E-value=25 Score=19.38 Aligned_cols=22 Identities=18% Similarity=0.453 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCeE
Q 033334 75 KKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri 96 (121)
..+.+.+.+.+.+.+|++++.+
T Consensus 6 ~~i~~~l~~ii~~~l~~~~~~i 27 (82)
T 2qnw_A 6 RPLLERVKDVVADQLGVDRARI 27 (82)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHHCCCHhhC
Confidence 4567778888888888876643
No 195
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=30.30 E-value=68 Score=20.03 Aligned_cols=30 Identities=7% Similarity=0.055 Sum_probs=20.8
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
|+++...+..+++.+++ +.+|++.+++...
T Consensus 116 R~~~~~~e~~~~f~~~~-~~~G~~~~~i~~~ 145 (160)
T 3sao_A 116 RSREVSPTAMAIFRKLA-RERNYTDEMVAVL 145 (160)
T ss_dssp SSSSCCHHHHHHHHHHH-HTTTCCGGGEEEC
T ss_pred cCCCCCHHHHHHHHHHH-HHcCCCHHHEEEC
Confidence 66666666666665555 4589999998754
No 196
>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}
Probab=30.30 E-value=60 Score=19.90 Aligned_cols=35 Identities=11% Similarity=0.078 Sum_probs=24.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCC
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKP 35 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp 35 (121)
.|.+.+......+..+...+.+.|.+...+..|-|
T Consensus 78 ~P~i~l~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 112 (138)
T 2yz0_A 78 APEIEFKNVQNVMDSQLQMLKSEFKKIHNTSRGQE 112 (138)
T ss_dssp CCEEEEECCCSCCSHHHHHHHHHHHHHHHHSTTSC
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 37888876666666667777778877777766654
No 197
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=30.20 E-value=55 Score=19.72 Aligned_cols=23 Identities=9% Similarity=-0.034 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+.+.+.++.|+|+++..+.|-
T Consensus 50 ~~LK~~I~~k~Gipp~~QRli~g 72 (105)
T 4dbg_A 50 ASLKDMVFLDYGFPPVLQQWVIG 72 (105)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCHHHEEEecc
Confidence 34667778888999998886653
No 198
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=29.94 E-value=58 Score=19.41 Aligned_cols=21 Identities=10% Similarity=0.286 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCCCeEEEEEE
Q 033334 81 ISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 81 i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.+.+++..|+|+++..+.|.
T Consensus 61 LK~~I~~~~gip~~~QrL~~~ 81 (115)
T 1we7_A 61 IKVKIHEATGMPAGKQKLQYE 81 (115)
T ss_dssp HHHHHHHHSSCCTTTEEEEET
T ss_pred HHHHHHHHHCCChHHEEEEEC
Confidence 455566778999999999884
No 199
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=29.88 E-value=1e+02 Score=19.18 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=23.1
Q ss_pred CCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhC
Q 033334 53 GTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS 90 (121)
Q Consensus 53 g~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lg 90 (121)
|+..--.||+|....+-+...+- -+.++|++|.+.|+
T Consensus 74 ~~e~~~~fIQi~LP~~AThGDKg-KANEfckfLAK~l~ 110 (126)
T 1t6a_A 74 RTAGEETFIDIALPPGATHGDKG-KANEFSKWLAKTLG 110 (126)
T ss_dssp EEETTEEEEEEECCTTCCHHHHH-HHHHHHHHHHHHHC
T ss_pred cccCCcceEEEECCCCCCcCcch-hHHHHHHHHHHHhh
Confidence 34445678888888776644433 34456777776664
No 200
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=29.58 E-value=92 Score=18.51 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecC
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGG 53 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg 53 (121)
++.-+.++-.++++..|+|.+|..|..-.+......+
T Consensus 26 ~~TTC~DVV~aL~~~~G~~~~y~LvE~wRg~ER~L~~ 62 (95)
T 2cs4_A 26 EVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAP 62 (95)
T ss_dssp SSSCHHHHHHHHHHHHSCCSEEEEEEEETTEEEECCS
T ss_pred CCCcHHHHHHHHHhccCCCccEEEEEecCCCeecCCC
Confidence 4456677788888889999999888765444444443
No 201
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=29.56 E-value=26 Score=28.50 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEeC--CCCCceeCCce
Q 033334 77 LSAAISAILEKKLSVPKSRFFIKFYDT--KAHQSREHAQC 114 (121)
Q Consensus 77 ~~~~i~~~l~~~lgi~~~ri~i~f~~~--~~~~~g~~G~~ 114 (121)
..-.++....+.||||.++|.|...|. .|..+|-.|+.
T Consensus 472 ~~T~~aQiaAe~Lgi~~e~V~v~~~DT~~~p~~~~t~aSr 511 (755)
T 3nvz_C 472 LHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASV 511 (755)
T ss_dssp HHHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCchhH
Confidence 445577888899999999999988774 34555555543
No 202
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=29.52 E-value=52 Score=19.80 Aligned_cols=23 Identities=4% Similarity=0.043 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.|.+.+.+..|++++.+.+.|.
T Consensus 54 ~kL~~ay~ek~gi~~~~~rF~Fd 76 (106)
T 2eke_C 54 RRLMEAFAKRQGKEMDSLRFLYD 76 (106)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCcccEEEEEC
Confidence 34566677888999999999885
No 203
>3h0g_K DNA-directed RNA polymerase II subunit RPB11; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.48 E-value=75 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=16.9
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~ 29 (121)
|.++|+|..+.++ .++|.+++.+++.
T Consensus 70 ~~lrIqT~~~~~p--~eaL~~al~~L~~ 95 (123)
T 3h0g_K 70 FILRVQTVEDCSP--KQVIVDAAKSLIT 95 (123)
T ss_dssp EEEEEECCSSSCS--HHHHHHHHHHHHH
T ss_pred eEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 5788999876555 3566666655543
No 204
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=29.47 E-value=48 Score=19.63 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEE
Q 033334 75 KKLSAAISAILEKKLSVPKSRFFI 98 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri~i 98 (121)
..-.+.|-+|+.+++|.++++|.|
T Consensus 28 prAik~Irkfa~k~m~t~~~dVri 51 (92)
T 1vq8_X 28 DKAMILIREHLAKHFSVDEDAVRL 51 (92)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHHHHHhCCCcccEEE
Confidence 344577899999999999877766
No 205
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=29.20 E-value=42 Score=18.45 Aligned_cols=22 Identities=9% Similarity=0.326 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCeE
Q 033334 75 KKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri 96 (121)
..+...+.+.+.+.++++++.+
T Consensus 8 ~~i~~~l~~~i~~~l~~~~~~i 29 (84)
T 2kwl_A 8 DEIFSKVRSIISEQLDKKEDEI 29 (84)
T ss_dssp HHHHHHHHHHHHHHHCCCGGGC
T ss_pred HHHHHHHHHHHHHHhCCCcccC
Confidence 4577788888899998876653
No 206
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=28.84 E-value=1.7e+02 Score=21.23 Aligned_cols=74 Identities=18% Similarity=0.183 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeC-------CChhHHHHHHHHHHHHHHHHh
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG-------LNPDVNKKLSAAISAILEKKL 89 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~-------~~~e~~~~~~~~i~~~l~~~l 89 (121)
...|.+.+.+.+.+.+|.+.+-+-- ..+- ...-.+.-|+++||+--+.. .+++..++++++|.+-+ +-+
T Consensus 111 s~~LA~~I~~~l~~~~g~~~RGvk~--~~~~-~vLr~t~~PaVLVE~GFisN~~D~~~L~~~~~q~~iA~aIa~GI-~y~ 186 (326)
T 1xov_A 111 GRKLAVEISAKMAKALGLPNRGAKA--TKDL-RFLNSTKGTAVLLEVCFVDRKEDANAIHKSGMYDKLGIAIAEGL-TGK 186 (326)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEE--ESCC-HHHHHCSSCEEEEEEEETTCHHHHHHHTSTTHHHHHHHHHHHHH-HSS
T ss_pred HHHHHHHHHHHHHHHcCCCCCCccc--cCCc-eeecCCCCCEEEEEecCCCCHHHHHHhcCHHHHHHHHHHHHHHH-HHh
Confidence 4578888888888888865443321 1111 11123578999999976642 23556789999999998 777
Q ss_pred CCCCC
Q 033334 90 SVPKS 94 (121)
Q Consensus 90 gi~~~ 94 (121)
+.+..
T Consensus 187 ~~~~~ 191 (326)
T 1xov_A 187 TVAAK 191 (326)
T ss_dssp CCSCC
T ss_pred ccCCC
Confidence 76544
No 207
>2ogg_A Trehalose operon transcriptional repressor; gene repressor, sugar binding, structural genomics, PSI-2, P structure initiative; 2.50A {Bacillus subtilis} SCOP: d.190.1.2
Probab=28.70 E-value=1e+02 Score=18.68 Aligned_cols=73 Identities=7% Similarity=-0.068 Sum_probs=37.3
Q ss_pred HHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHH-HHHHHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVN-KKLSAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 26 ~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~-~~~~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
..+++.|+.+...-.+.+. ++.+. ...|.++-.......+-+... .....-+.++|++.+|+...+..-.+.-
T Consensus 23 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~sly~~l~~~~g~~~~~~~~~i~a 96 (152)
T 2ogg_A 23 ELIQKQLRANLDDDIWEVI---RSRKI-DGEHVILDKDYFFRKHVPHLTKEICENSIYEYIEGELGLSISYAQKEIVA 96 (152)
T ss_dssp HHHHHHHTCCTTCCEEEEE---EEEEE-TTEEEEEEEEEEETTTCCCCCHHHHTSCHHHHHHHHHTTSEEEEEEEEEE
T ss_pred HHHHHhcCCCCCCeEEEEE---EEEeE-CCcEEEEEeeeeEHHHCCCCCHHHhcCcHHHHHHhhcCccEEEEEEEEEE
Confidence 3567778876553223232 12222 346766655544432211111 1122457888888888877665555443
No 208
>2l9f_A CALE8, meacp; transferase, acyl carrier protein; NMR {Micromonospora echinospora}
Probab=28.53 E-value=42 Score=20.24 Aligned_cols=20 Identities=5% Similarity=0.218 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhCCCCCeE
Q 033334 77 LSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 77 ~~~~i~~~l~~~lgi~~~ri 96 (121)
+...+.+++.+.+|++++.|
T Consensus 15 I~~~V~~ilaE~lev~~e~V 34 (102)
T 2l9f_A 15 ALELVRHLVAERAELPVEVL 34 (102)
T ss_dssp HHHHHHHHHHHHTTSCSSSC
T ss_pred HHHHHHHHHHHHHCCCHHHc
Confidence 55678888999999998875
No 209
>1qlm_A Methenyltetrahydromethanopterin cyclohydrolase; methanogenesis, biological methanogenesis; 2.0A {Methanopyrus kandleri} SCOP: d.147.1.1
Probab=28.37 E-value=50 Score=24.06 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.5
Q ss_pred CeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 57 PAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 57 p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
..+.+.+.+ +.+.++. +.+.+.+++|++|+++|+.....
T Consensus 133 ~~avl~lEs-~~lP~~~-------v~e~iA~~cgV~p~~v~~lvapT 171 (316)
T 1qlm_A 133 DVAILCLES-SELPDED-------VAEHVADECGVDPENLYLLVAPT 171 (316)
T ss_dssp SCEEEEEEC-SSCCCHH-------HHHHHHHHHTSCGGGEEEEEECS
T ss_pred CceEEEEec-CCCCCHH-------HHHHHHHHcCCCHHHEEEEEecC
Confidence 345544544 2355544 67888899999999999998765
No 210
>1ooh_A Odorant binding protein LUSH; alcohol, transport protein; 1.25A {Drosophila melanogaster} SCOP: a.39.2.1 PDB: 3b6x_A 2gte_A* 1oof_A 1ooi_X 1t14_A 1oog_A* 3b7a_A 3b86_A* 3b87_A* 3b88_A* 2qdi_A*
Probab=28.09 E-value=15 Score=22.07 Aligned_cols=28 Identities=7% Similarity=-0.054 Sum_probs=23.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCCCe
Q 033334 68 GLNPDVNKKLSAAISAILEKKLSVPKSR 95 (121)
Q Consensus 68 ~~~~e~~~~~~~~i~~~l~~~lgi~~~r 95 (121)
.+++++.++..+.+.+...+++|++.+.
T Consensus 2 ~~t~~~~~~~~~~~~~~C~~e~~v~~~~ 29 (126)
T 1ooh_A 2 HMTMEQFLTSLDMIRSGCAPKFKLKTED 29 (126)
T ss_dssp CCCHHHHHHHHHHHHHTTGGGSCCCHHH
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCHHH
Confidence 4788898888899999999999988654
No 211
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=27.99 E-value=1.7e+02 Score=21.30 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCC-CcEEEEEEeCCceeeecCCCCCeeEEEEEee-eCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Q 033334 24 ATSTVANIIGKP-EAYVMIVLKGSVPMSFGGTEDPAAYGELVSI-GGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (121)
Q Consensus 24 l~~~~~~~~~kp-~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~-g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f 100 (121)
-++.+++..+.+ .+.+|....++-+...--+--| |+.+ ..++.+.-.+..+.+.+.++ .+|+...||-|.=
T Consensus 155 hTEyLa~~~~~~~~~~~Mml~~~~LrV~~vTtHip-----Lk~V~~~It~~~I~~~i~~~~~~l~-~fgi~~PrIaV~G 227 (349)
T 4aty_A 155 YPGFVAHEMGMPAEDVYLLLIGGGLRIVHATLHEG-----IASALARLDQRHVERAARAAVQALQ-LMGIAHPVVGLMG 227 (349)
T ss_dssp HHHHHHHHTTSCGGGSEEEEEETTEEEEESSCSSC-----HHHHHHHCCHHHHHHHHHHHHHHHH-HTC-CCCCEEEEC
T ss_pred chHHhhhhcccCCcchhhhhcCCCcceeecccccc-----hhcchhhhhhHHHHHHHHHHHHHHH-HhcCCCCceEEEe
Confidence 577788877754 4455665555433333322222 2212 34677777777787888886 5999999987763
No 212
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=27.93 E-value=67 Score=21.72 Aligned_cols=20 Identities=0% Similarity=0.071 Sum_probs=16.8
Q ss_pred HHHhCCCCCeEEEEEEeCCC
Q 033334 86 EKKLSVPKSRFFIKFYDTKA 105 (121)
Q Consensus 86 ~~~lgi~~~ri~i~f~~~~~ 105 (121)
.+.++|+++++.|.++|++-
T Consensus 86 ~~~yki~~~~ilVihDdldL 105 (199)
T 4fyj_A 86 AGFFRIAPDAILVAHDELDM 105 (199)
T ss_dssp HHHTTCCGGGEEEEEEETTS
T ss_pred HHHhCCCHHHEEEEEecCCC
Confidence 34579999999999999864
No 213
>3v2l_A AGAP005208-PA; odorant binding olfaction, general odorant binding protein, transport, secreted, odorant-binding protein; HET: PG4; 1.80A {Anopheles gambiae} PDB: 4f7f_A* 3vb1_A
Probab=27.84 E-value=30 Score=20.43 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
+|.+|-++..+.+.+...+++|++.+.+
T Consensus 1 mT~eq~~~~~~~~~~~C~~e~gv~~e~i 28 (120)
T 3v2l_A 1 MTVEQMMKSGEMIRSVCLGKTKVAEELV 28 (120)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhhhCcCHHHH
Confidence 3567888888999999999999987654
No 214
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=27.83 E-value=49 Score=20.08 Aligned_cols=30 Identities=17% Similarity=0.171 Sum_probs=20.3
Q ss_pred CCcEEEEEEeCCceeeecCCCCCeeEEEEE
Q 033334 35 PEAYVMIVLKGSVPMSFGGTEDPAAYGELV 64 (121)
Q Consensus 35 p~~~i~v~v~~~~~~~~gg~~~p~~~v~i~ 64 (121)
....+.|.+..+..+-..|.+||++.+.+.
T Consensus 24 ~~~~L~V~v~~a~~~d~~g~sDPyv~v~l~ 53 (138)
T 1wfm_A 24 QKAELFVTRLEAVTSNHDGGCDCYVQGSVA 53 (138)
T ss_dssp TTTEEEEEEEEEECCCCSSCCCEEEEEEEE
T ss_pred CCCEEEEEEEEEEcCCCCCCcceEEEEEEE
Confidence 345666776655555667888998877773
No 215
>3aq9_A Group 1 truncated hemoglobin; 2/2 fold hemoglobin, nitric oxide detoxification, oxygen BIN; HET: HEM; 1.74A {Tetrahymena pyriformis} PDB: 3aq5_A* 3aq6_A* 3aq8_A* 3aq7_A*
Probab=27.68 E-value=29 Score=20.94 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCC
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKS 94 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ 94 (121)
.+.....+.+.++.++|-|..|- +..|.- .-.|. ++++++...+...+.+.+.+ +|++++
T Consensus 43 ~~~~~~~l~~fl~~~~gGp~~Y~------g~~m~~--~H~~~---------~I~~~~f~~wl~~~~~al~~-~~~~~~ 102 (121)
T 3aq9_A 43 MDHQTKQETDFLTMLLGGPNHYK------GKNMTE--AHKGM---------NLQNLHFDAIIENLAATLKE-LGVTDA 102 (121)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCC------SCCHHH--HTTTS---------CBCHHHHHHHHHHHHHHHHH-TTCCHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCC------CccHHH--HhcCC---------CcCHHHHHHHHHHHHHHHHH-cCCCHH
Confidence 56778899999999999999871 222210 00111 48899999999999988877 577653
No 216
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.60 E-value=18 Score=21.05 Aligned_cols=24 Identities=4% Similarity=0.133 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...|.+.+++..|||+++..+.|.
T Consensus 39 V~~LK~~I~~~tgip~~~QrL~~~ 62 (95)
T 1v86_A 39 GSELKQKIHSITGLPPAMQKVMYK 62 (95)
T ss_dssp HHHHHHHHHHHHCSCSTTCCCBSS
T ss_pred HHHHHHHHHHHHCcCHHHeEEEEC
Confidence 456778888889999999888764
No 217
>3b21_A ORF169B, OSPI; bacterial protein, effector, type 3 secretion SYST unknown function; 2.01A {Shigella flexneri}
Probab=27.51 E-value=1.3e+02 Score=19.47 Aligned_cols=51 Identities=12% Similarity=0.091 Sum_probs=34.2
Q ss_pred CCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecC-CCCCeeEEEEE
Q 033334 13 DGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGG-TEDPAAYGELV 64 (121)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg-~~~p~~~v~i~ 64 (121)
+.+.-..|.+.+.+-+.....| .+.+|+.++...+|+.|- ..+...|..+.
T Consensus 119 pnetyskfreriaenilqntsk-gsvvmisieqathwiagfndgekimfldvq 170 (220)
T 3b21_A 119 PNETYSKFRERIAENILQNTSK-GSVVMISIEQATHWIAGFNDGEKIMFLDVQ 170 (220)
T ss_dssp TTCBHHHHHHHHHHHHHHHSCT-TCEEEEEETTTTEEEEEEECSSCEEEEBTT
T ss_pred CchhHHHHHHHHHHHHHhccCC-CcEEEEEhhhhhhhhhccCCCceEEEEEee
Confidence 3344457888888888777766 678899998888888773 22444444443
No 218
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=27.20 E-value=45 Score=19.75 Aligned_cols=22 Identities=5% Similarity=0.175 Sum_probs=17.4
Q ss_pred HHHHHHHHHhCCCCCeEEEEEE
Q 033334 80 AISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 80 ~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+.+.+++..|+|+++..+.|.
T Consensus 56 ~LK~~I~~~~gip~~~QrL~~~ 77 (111)
T 1we6_A 56 SLKEKIAGEIQIPANKQKLSGK 77 (111)
T ss_dssp HHHHHHHHHTTCCTTTSEEECS
T ss_pred HHHHHHHHHHCCCHHHeEEEEC
Confidence 3556667778999999999884
No 219
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.86 E-value=84 Score=18.41 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHh--CCCCCe-EEEEEE
Q 033334 78 SAAISAILEKKL--SVPKSR-FFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~l--gi~~~r-i~i~f~ 101 (121)
...|.+.+++.. |+|+++ ..+.|.
T Consensus 47 V~~LK~~i~~~~~~gip~~~~qrLi~~ 73 (107)
T 1x1m_A 47 ISFLKQLIAGKLQESVPDPELIDLIYC 73 (107)
T ss_dssp HHHHHHHHHHHCTTTCCCSSSEEEEET
T ss_pred HHHHHHHHHHHhccCCChhhcEEEEEC
Confidence 455777788889 999999 888764
No 220
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=26.80 E-value=1.4e+02 Score=19.69 Aligned_cols=36 Identities=19% Similarity=0.215 Sum_probs=25.8
Q ss_pred CCeeEEEEEe------eeCCChhHHHHHHHHHHHHHHHHhCCC
Q 033334 56 DPAAYGELVS------IGGLNPDVNKKLSAAISAILEKKLSVP 92 (121)
Q Consensus 56 ~p~~~v~i~~------~g~~~~e~~~~~~~~i~~~l~~~lgi~ 92 (121)
+|.+-+-|.+ .|..+.++-+.-.+.+.+.|++ +|++
T Consensus 52 ~P~~t~lIF~SGKiv~TGakS~~~~~~a~~~i~~~L~~-lG~~ 93 (182)
T 1ais_A 52 DPKVALLIFSSGKLVVTGAKSVQDIERAVAKLAQKLKS-IGVK 93 (182)
T ss_dssp SSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHH-TTCC
T ss_pred CCcEEEEEeCCCeEEEecCCCHHHHHHHHHHHHHHHHH-cCCC
Confidence 4555555543 3567888888888888888876 8987
No 221
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=26.72 E-value=70 Score=21.77 Aligned_cols=20 Identities=0% Similarity=0.077 Sum_probs=16.5
Q ss_pred HHHhCCCCCeEEEEEEeCCC
Q 033334 86 EKKLSVPKSRFFIKFYDTKA 105 (121)
Q Consensus 86 ~~~lgi~~~ri~i~f~~~~~ 105 (121)
.+.++|+++++.|.++|++-
T Consensus 99 ~~~yki~~e~ilVihDdLDL 118 (207)
T 3nea_A 99 ANFYKIAPAEILVVHDELDI 118 (207)
T ss_dssp HHHHTCCGGGEEEEEEETTS
T ss_pred HHHhCCCHHHEEEEEEcCCC
Confidence 34468999999999999864
No 222
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.68 E-value=38 Score=20.11 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKF 100 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f 100 (121)
...+.+.+++..|||++|..+.+
T Consensus 31 V~~LK~~I~~~tgIpp~~QkLi~ 53 (100)
T 2dzm_A 31 VGEIKQILENELQIPVSKMLLKG 53 (100)
T ss_dssp HHHHHHHHHHHHCCCTTTCCEEC
T ss_pred HHHHHHHHHHHHCCChhHeEEEc
Confidence 35577888899999999988865
No 223
>2v4i_A Glutamate N-acetyltransferase 2 alpha chain; cytoplasm, acyl enzyme, NTN hydrolase, acyltransferase, ornithine acetyl transferase; 2.2A {Streptomyces clavuligerus} PDB: 2vzk_A* 2w4n_A* 2yep_A*
Probab=26.64 E-value=1.4e+02 Score=19.68 Aligned_cols=33 Identities=9% Similarity=0.170 Sum_probs=28.1
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
.+-++=.+-+.++++.+.+.||+++++|.+.=.
T Consensus 72 ~TG~~G~~da~~~~~~~A~~lg~~~~~Vlv~ST 104 (173)
T 2v4i_A 72 ATGLEGEENAREVREAVARALGLPEGEMLIAST 104 (173)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCchhEEEecC
Confidence 456777889999999999999999999988633
No 224
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=26.25 E-value=67 Score=18.36 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=18.5
Q ss_pred HHHHHHHH-HHHhCCCCCeEEEEEE
Q 033334 78 SAAISAIL-EKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l-~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+ ++..|+|+++..+.|.
T Consensus 26 V~~lK~~I~~~~~gip~~~QrLi~~ 50 (87)
T 2lxa_A 26 ILQIKQHLISEEKASHISEIKLLLK 50 (87)
T ss_dssp HHHHHHHHHHTTSCSSSTTEEEEET
T ss_pred HHHHHHHHHHHhcCCChHHEEEEEC
Confidence 44566666 7777999999999884
No 225
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=26.23 E-value=1.1e+02 Score=18.33 Aligned_cols=33 Identities=9% Similarity=0.116 Sum_probs=25.9
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCC
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~ 92 (121)
.+.+.+..+++..++..+.+.|.+..++.+|-+
T Consensus 77 ~i~~~~~~~L~~~~~~~L~~~L~~~~~e~~G~~ 109 (128)
T 2day_A 77 QISIRNPRGLSDEQIHTILQVLGHVAKAGLGTA 109 (128)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 345666667999999999999988888877754
No 226
>1yb0_A Prophage lambdaba02, N-acetylmuramoyl-L-alanine amidase, family 2; PLYL, E.C.3.5.1.28, hydrolase; 1.86A {Bacillus anthracis} SCOP: d.118.1.1 PDB: 2ar3_A 2l47_A
Probab=25.92 E-value=1.1e+02 Score=19.34 Aligned_cols=40 Identities=5% Similarity=-0.125 Sum_probs=24.6
Q ss_pred eEEEEEeeeCCC----hhHHHHHHHHHHHHHHHHhCCCCCeEEE
Q 033334 59 AYGELVSIGGLN----PDVNKKLSAAISAILEKKLSVPKSRFFI 98 (121)
Q Consensus 59 ~~v~i~~~g~~~----~e~~~~~~~~i~~~l~~~lgi~~~ri~i 98 (121)
..|-|...|..+ -+...+-..+|+..|.+..+|++++|+-
T Consensus 85 ~SIGIE~~~~~~~~~~~~~~~~~~~~L~~~l~~~y~i~~~~I~g 128 (159)
T 1yb0_A 85 ESISVEICYSKSGGDRYYKAENNAVDVVRQLMSMYNIPIENVRT 128 (159)
T ss_dssp HEEEEEETTTTTCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred CEEEEEEEeeCCCCCChHHHHHHHHHHHHHHHHHhCCChhhEEc
Confidence 445665555421 1222334567788888999999998543
No 227
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=25.85 E-value=91 Score=17.70 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=17.3
Q ss_pred HHHHHHHHHH---hCCCCCeEEEEEE
Q 033334 79 AAISAILEKK---LSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~---lgi~~~ri~i~f~ 101 (121)
+.+.+.+++. .|+|+++..+.|.
T Consensus 24 ~~LK~~I~~~~~~~gip~~~qrLi~~ 49 (95)
T 1uel_A 24 KALKEKIESEKGKDAFPVAGQKLIYA 49 (95)
T ss_dssp HHHHHHHHHHHCTTTCCTTTEEEEET
T ss_pred HHHHHHHHhhcccCCCChhhEEEEEC
Confidence 4456666666 5899999999874
No 228
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=25.82 E-value=45 Score=20.21 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 79 AAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
+.|.+.+.+..|++++.+.+.|.-
T Consensus 50 ~kL~~ay~ek~gi~~~~~rfiFdG 73 (110)
T 2k8h_A 50 KKLIDTYCKKQGISRNSVRFLFDG 73 (110)
T ss_dssp HHHHHHHHHHHTCCSSSCEEESSS
T ss_pred HHHHHHHHHHhCCCcccEEEEECC
Confidence 446677777889999998888753
No 229
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.69 E-value=1.1e+02 Score=18.28 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=26.6
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCC
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~ 92 (121)
.+++.+..+++..+...+.+.+.+..++.+|-+
T Consensus 73 ~i~l~~~~~l~~~~~~~L~~~L~~~~~e~~G~~ 105 (128)
T 2ebm_A 73 LYEIFSQENLEDNDVSDILKLLALQAEENLGMV 105 (128)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHHHHhCCCE
Confidence 466777667999999999999999988877754
No 230
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=25.66 E-value=50 Score=18.76 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033334 73 VNKKLSAAISAILEKK 88 (121)
Q Consensus 73 ~~~~~~~~i~~~l~~~ 88 (121)
.|++++..|.+||++.
T Consensus 6 ~~K~la~sIi~FL~~~ 21 (74)
T 2lxb_A 6 SKEEIAALIVNYFSSI 21 (74)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh
Confidence 3455666666666554
No 231
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=25.59 E-value=68 Score=19.07 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCCCeEEEEEEe
Q 033334 80 AISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 80 ~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
++++.+.+..|++++++.+.|..
T Consensus 45 KL~~aYc~r~gv~~~sirFlfDG 67 (95)
T 2l76_A 45 SVVDHMATHLGVSPSRILLLFGE 67 (95)
T ss_dssp HHHHHHHHHHTSCGGGEEEEETT
T ss_pred HHHHHHHhhcCCChhhEEEEECC
Confidence 46667788899999999999864
No 232
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=25.46 E-value=37 Score=18.44 Aligned_cols=22 Identities=14% Similarity=0.268 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCeE
Q 033334 75 KKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri 96 (121)
.++.+.+.+.+.+.+|++++.+
T Consensus 6 ~~i~~~l~~~l~~~l~~~~~~i 27 (81)
T 1f80_D 6 ADTLERVTKIIVDRLGVDEADV 27 (81)
T ss_dssp CHHHHHHHHHHHHHSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCHHhC
Confidence 3466778888888898877643
No 233
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=25.34 E-value=1.2e+02 Score=20.27 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=23.4
Q ss_pred CCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhC
Q 033334 56 DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLS 90 (121)
Q Consensus 56 ~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lg 90 (121)
+...|+++..-..+++++-+++-+.+-+.+.+.+.
T Consensus 99 ~~g~y~d~~~~~~~t~edl~~IE~~m~~iI~~~~p 133 (224)
T 1tke_A 99 DNGFYYDVDLDRTLTQEDVEALEKRMHELAEKNYD 133 (224)
T ss_dssp TTEEEEEEECSSCCCHHHHHHHHHHHHHHHTTCCB
T ss_pred CCeEEEEEeCCCCCCHHHHHHHHHHHHHHHhCCCC
Confidence 45567777655567888777777777666655443
No 234
>3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=25.31 E-value=33 Score=22.81 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
++++.+.++-+++ .-+.+.+|++.++|++.
T Consensus 129 R~~e~~~e~le~F-~~~~~~~Gl~~e~Ii~~ 158 (192)
T 3bx6_A 129 DKPETTKEQLGEF-YEALDCLRIPKSDVVYT 158 (192)
T ss_dssp SSSCCCTTTTHHH-HHHHHHHTCCGGGCEEC
T ss_pred CCCCCCHHHHHHH-HHHHHHcCCCHHHEEEc
Confidence 4444443333332 33456789999988754
No 235
>2ikk_A Hypothetical transcriptional regulator YURK; APC85442, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 1.80A {Bacillus subtilis} SCOP: d.190.1.2
Probab=25.17 E-value=1.3e+02 Score=18.77 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=41.7
Q ss_pred HHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHH-HHH-HHHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVN-KKL-SAAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 26 ~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~-~~~-~~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
..+++.|+.+...-.+.+. ++.+. ...|.++-.......+-+... ..+ ..-+.++|++.+|++..+..-.+.-.
T Consensus 44 ~~ia~~L~l~~g~~v~~i~---Rlr~~-dg~P~~~e~~ylp~~~~~~l~~~~~~~~sly~~l~~~~g~~i~~~~~~i~a~ 119 (173)
T 2ikk_A 44 KPIAEKLQIQPESPVVELK---RILYN-DDQPLTFEVTHYPLDLFPGIDTFIADGVSMHDILKQQYKVVPTHNTKLLNVV 119 (173)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEES-SSSEEEEEEEEEETTTSTTGGGGCCTTCCHHHHHHHHHCCCCCEEEEEEEEE
T ss_pred HHHHHhcCCCCCCEEEEEE---EEEee-CCccEEEEEEeeeHhHCCCcchhhccCCcHHHHHHHHhCCCeEEEEEEEEEE
Confidence 4577888876653333332 22322 457877766655543322211 112 23478888888888877766555443
No 236
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=25.16 E-value=1.2e+02 Score=21.06 Aligned_cols=29 Identities=14% Similarity=0.409 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 70 NPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 70 ~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
+.+.+.++.+++.+.+. ..||+++||++-
T Consensus 132 t~~~~~~~~~~~~~~a~-~~Gi~~~~IilD 160 (262)
T 1f6y_A 132 DSDTRLAFAMELVAAAD-EFGLPMEDLYID 160 (262)
T ss_dssp SHHHHHHHHHHHHHHHH-HHTCCGGGEEEE
T ss_pred CHHHHHHHHHHHHHHHH-HCCCCcccEEEe
Confidence 45677777777777776 679999998764
No 237
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=25.15 E-value=1.1e+02 Score=18.15 Aligned_cols=82 Identities=11% Similarity=0.150 Sum_probs=42.8
Q ss_pred CCeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeC---CChhHHHHH
Q 033334 1 MPCLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGG---LNPDVNKKL 77 (121)
Q Consensus 1 MP~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~---~~~e~~~~~ 77 (121)
|+.|.+.......+...++|.+.+.+.+...-.-|.. +...+..+ .++|..|+-+..-.. +..-.+..+
T Consensus 23 m~MI~via~~~vkpg~~~~f~~~l~~~~~~~r~EpGc-l~y~l~~~-------~~dp~~f~~~E~W~d~ea~~aH~~s~~ 94 (119)
T 4dpo_A 23 MLAIRVVAKNQVKPEKVQEFMNLCKSLIEETLKEEGC-IDYGVYQE-------LENPEILTMLEEWKDEGSLDQHIRSDH 94 (119)
T ss_dssp HHCEEEEEEEEBCTTTHHHHHHHHHHHHHHHHTSTTE-EEEEEEEE-------TTEEEEEEEEEEESSHHHHHHHHTSHH
T ss_pred cceEEEEEEEEECCCcHHHHHHHHHHHHHHHhcCCCc-EEEEEEEc-------CCCCCEEEEEEEECCHHHHHHHHcCHH
Confidence 4444554444444455789999998888777544443 33322211 245666655554322 222334445
Q ss_pred HHHHHHHHHHHhC
Q 033334 78 SAAISAILEKKLS 90 (121)
Q Consensus 78 ~~~i~~~l~~~lg 90 (121)
.+++.+.+...+.
T Consensus 95 f~~~~~~~~~ll~ 107 (119)
T 4dpo_A 95 FKEIFPLLSECLD 107 (119)
T ss_dssp HHHHHHHHHHTBS
T ss_pred HHHHHHHHHHHhc
Confidence 5555555555443
No 238
>2p19_A Transcriptional regulator; bacterial regulatory protein, GNTR family, MCSG, structural PSI-2, protein structure initiative; 2.10A {Corynebacterium glutamicum} SCOP: d.190.1.2
Probab=25.14 E-value=1.2e+02 Score=18.28 Aligned_cols=72 Identities=17% Similarity=0.128 Sum_probs=41.4
Q ss_pred HHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhH-HHHHH-HHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDV-NKKLS-AAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 26 ~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~-~~~~~-~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
..+++.|+.+...-.+.+. ++.+. ...|.++-.......+ +.. ...+. .-+.++|++. |++..+..-.+.-.
T Consensus 22 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~-~~l~~~~~~~~sly~~l~~~-g~~~~~~~~~i~a~ 95 (149)
T 2p19_A 22 SAIAEKLGVSAGDEVLLIR---RLRST-GDIPVAILENYLPPAF-NDVSLDELEKGGLYDALRSR-GVVLKIANQKIGAR 95 (149)
T ss_dssp HHHHHHHTSCTTCEEEEEE---EEEEE-TTEEEEEEEEEECGGG-TTCCHHHHHHSCHHHHHHHT-TCCCCEEEEEEEEE
T ss_pred HHHHHHcCcCCCCEEEEEE---EEEeE-CCeeEEEEEEEecccc-CCcChhhccCCCHHHHHHhC-CceeEEEEEEEEEE
Confidence 3577788876653333332 22222 3468777666555444 433 33333 3588899988 98887765555443
No 239
>1vra_A Arginine biosynthesis bifunctional protein ARGJ; 10175521, S genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.00A {Bacillus halodurans}
Probab=25.11 E-value=1.7e+02 Score=19.98 Aligned_cols=32 Identities=6% Similarity=0.052 Sum_probs=27.4
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCeEEEEE
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFIKF 100 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f 100 (121)
.+-++=.+-+.++++.+.+.||+++++|.+.=
T Consensus 103 ~TG~~G~~da~~~a~~~A~~lgi~~~~VlvaS 134 (208)
T 1vra_A 103 CTGKRGLDDAYTMRAVGAETFHIPEHYVAVTS 134 (208)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred cccHHHHHHHHHHHHHHHHHhCCChhHEEEeC
Confidence 45677788899999999999999999998753
No 240
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=25.00 E-value=81 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=17.5
Q ss_pred HHHHhCCCCCeEEEEEEeCCC
Q 033334 85 LEKKLSVPKSRFFIKFYDTKA 105 (121)
Q Consensus 85 l~~~lgi~~~ri~i~f~~~~~ 105 (121)
+.+.++|+++++.|.++|++-
T Consensus 91 ~~~~yki~~~~ilVihDdLdL 111 (205)
T 1ryb_A 91 LAAYYQVPLRHILLIYDDTSL 111 (205)
T ss_dssp HHHHTTCCGGGEEEEEEETTS
T ss_pred HHHHhCCCHHHEEEEeecccC
Confidence 345679999999999999964
No 241
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=24.89 E-value=71 Score=21.63 Aligned_cols=39 Identities=15% Similarity=0.131 Sum_probs=29.1
Q ss_pred eeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 58 AAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 58 ~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
.+-|-|.+ ..+++.+ +..|.+++.+++|+.++ |-|.|.+
T Consensus 157 ~V~VVVka-~~Ls~~e----aaqI~DIV~r~tgv~~d-V~Vqf~p 195 (197)
T 3tuf_A 157 KINITVKS-DKHSKSK----ATAIIDLVAKEIKTMKD-VAVTFEP 195 (197)
T ss_dssp EEEEEEEC-SCCCHHH----HHHHHHTSCHHHHTTSE-EEEEEEC
T ss_pred EEEEEEeC-CCCCHHH----HHHHHHHHHHhhCCCCc-eEEEeee
Confidence 34455554 4577655 56688999999999988 9999986
No 242
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=24.69 E-value=1.1e+02 Score=17.69 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=22.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHhCCCCC
Q 033334 68 GLNPDVNKKLSAAISAILEKKLSVPKS 94 (121)
Q Consensus 68 ~~~~e~~~~~~~~i~~~l~~~lgi~~~ 94 (121)
..+++|++.+++.+.+.|...+.-+..
T Consensus 48 ~V~~~qR~~iAe~Fa~AL~~Svk~~~~ 74 (83)
T 2jpq_A 48 RVAASQRKLIAEKFAQALMSSLETPKT 74 (83)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 468999999999999999998776543
No 243
>4gvq_A Methenyltetrahydromethanopterin cyclohydrolase; HET: N4M; 1.30A {Archaeoglobus fulgidus} PDB: 4gvr_A 4gvs_A*
Probab=24.68 E-value=63 Score=23.54 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=26.8
Q ss_pred eeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 58 AAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 58 ~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
.+.+-+.+ ..+.++. +.+.+.+.+|++|+++|+.....
T Consensus 134 ~avl~lEs-~~lP~~~-------v~~~iA~~cgv~p~~l~llvapT 171 (316)
T 4gvq_A 134 VAVIALEA-NQLPDEK-------VMEFIAKECDVDPENVYALVAPT 171 (316)
T ss_dssp CEEEEEEC-SSCCCHH-------HHHHHHHHHTSCGGGEEEEEECS
T ss_pred cEEEEEEc-CCCCCHH-------HHHHHHHHcCCCHHHEEEEEecC
Confidence 44444443 2355544 67888899999999999998764
No 244
>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}
Probab=24.39 E-value=1.8e+02 Score=20.01 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=52.2
Q ss_pred eEEEEeCCCC--CCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCC-ceeeecCCCCCeeEEEEEeeeCCChhHHHHHHH
Q 033334 3 CLNISTNVKL--DGVDTSSILSEATSTVANIIGKPEAYVMIVLKGS-VPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSA 79 (121)
Q Consensus 3 ~i~i~tn~~~--~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~-~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~ 79 (121)
+..|+.|-+. ... ..++..+|.+++.++-..|.-++.|.--.+ ..|+-|+.-. .....+++....+..
T Consensus 19 v~~itlnrp~~~Nal-~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~--------~~~~~~~~~~~~~~~ 89 (265)
T 3kqf_A 19 VVKISLNRERQANSL-SLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLK--------ERAGMNEEQVRHAVS 89 (265)
T ss_dssp EEEEEECCGGGTTCB-CHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHH--------HHTTCCHHHHHHHHH
T ss_pred EEEEEEcCCCCCCCC-CHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChH--------HHhccCHHHHHHHHH
Confidence 4567777763 333 468899999999988877776666654445 5666665421 112234555666666
Q ss_pred HHHHHHHHHhCCCCC
Q 033334 80 AISAILEKKLSVPKS 94 (121)
Q Consensus 80 ~i~~~l~~~lgi~~~ 94 (121)
.+.+++......|+.
T Consensus 90 ~~~~~~~~l~~~~kP 104 (265)
T 3kqf_A 90 MIRTTMEMVEQLPQP 104 (265)
T ss_dssp HHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHhCCCC
Confidence 667776666666643
No 245
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=24.38 E-value=82 Score=21.70 Aligned_cols=20 Identities=0% Similarity=0.075 Sum_probs=16.5
Q ss_pred HHHhCCCCCeEEEEEEeCCC
Q 033334 86 EKKLSVPKSRFFIKFYDTKA 105 (121)
Q Consensus 86 ~~~lgi~~~ri~i~f~~~~~ 105 (121)
.+.++|+++++.|.++|++-
T Consensus 99 ~~~yki~~e~ilVihDdLDL 118 (222)
T 3v2i_A 99 AHFFKILPNEILVAHDELDL 118 (222)
T ss_dssp HHHHTCCGGGEEEEEEETTS
T ss_pred HHHhCCCHHHEEEEEecCCC
Confidence 34468999999999999864
No 246
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=24.35 E-value=62 Score=17.31 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhCCCCCeE
Q 033334 76 KLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 76 ~~~~~i~~~l~~~lgi~~~ri 96 (121)
++.+.+.+.+.+.+|++++.+
T Consensus 4 ~i~~~l~~~~~~~l~~~~~~i 24 (79)
T 2l3v_A 4 DTAERVKKIVVEHLGVDADKV 24 (79)
T ss_dssp HHHHHHHHHHHHHTCCCSTTC
T ss_pred HHHHHHHHHHHHHhCCCHhhC
Confidence 355678888999999987654
No 247
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=24.27 E-value=92 Score=19.05 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=17.9
Q ss_pred HHHHHHHHHhCCCCCeEEEEEEe
Q 033334 80 AISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 80 ~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
+|.+.+.+..|++++.+.+.|.-
T Consensus 65 KLm~aY~er~Gl~~~~irFlFDG 87 (115)
T 3kyd_D 65 KLKESYCQRQGVPMNSLRFLFEG 87 (115)
T ss_dssp HHHHHHHHHHTCCTTSEEEEETT
T ss_pred HHHHHHHHHhCCChhhEEEEECC
Confidence 35666677789999999998853
No 248
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=24.24 E-value=1.8e+02 Score=20.41 Aligned_cols=76 Identities=7% Similarity=0.017 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEee--eCCChhHHHHHHHHHHHHHHHHhCCCCCe
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSI--GGLNPDVNKKLSAAISAILEKKLSVPKSR 95 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~--g~~~~e~~~~~~~~i~~~l~~~lgi~~~r 95 (121)
++..+++.+.+.+..|.- .+++ -+...-| |..+++++.. +..+-++-.++++++.+.+++.+++ .+
T Consensus 214 ~~~~~~I~~~i~~~~~V~------~vh~-l~~~~~G---~~~~v~~hi~v~~~~sl~eah~i~~~ie~~l~~~~~~--~~ 281 (306)
T 3j1z_P 214 EDTRQRIKLIAKEDPRVL------GLHD-LRTRQAG---KTVFIQFHLELDGNLSLNEAHSITDTTGLRVKAAFED--AE 281 (306)
T ss_dssp HHHHHHHHHHHHHSTTBC------CCCC-BCCEEET---TEEEEEECCEECTTSBHHHHHHHHHHHHHHHHHHSTT--CE
T ss_pred hhHHHHHHHHHhcCCCcc------eeee-EEEEEEC---CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHHhhCCC--Ce
Confidence 456666766666654431 1222 2222223 3456666533 4567677778888999999998875 58
Q ss_pred EEEEEEeCCC
Q 033334 96 FFIKFYDTKA 105 (121)
Q Consensus 96 i~i~f~~~~~ 105 (121)
+.|.+++...
T Consensus 282 v~IhveP~~~ 291 (306)
T 3j1z_P 282 VIIHQDPVQV 291 (306)
T ss_dssp EEECCEETTS
T ss_pred EEEEeCCCCC
Confidence 8888777643
No 249
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=24.17 E-value=86 Score=17.05 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=17.1
Q ss_pred HHHHHHHHHH---hCCCCCeEEEEEE
Q 033334 79 AAISAILEKK---LSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~---lgi~~~ri~i~f~ 101 (121)
..+.+.+++. .|+|+++..+.|.
T Consensus 29 ~~lK~~i~~~~~~~gip~~~qrLi~~ 54 (85)
T 2wyq_A 29 KVLKEKIEAEKGRDAFPVAGQKLIYA 54 (85)
T ss_dssp HHHHHHHHHHHCTTTCCGGGEEEEET
T ss_pred HHHHHHHHhhccccCCCHHHeEEEEC
Confidence 4455666666 6899999999874
No 250
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=29.95 E-value=16 Score=19.80 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
.+.+.+.+++..|+|+++..+.|..
T Consensus 23 V~~lK~~i~~~~gi~~~~qrL~~~g 47 (76)
T 3b1l_X 23 ILQLKEVVAKQQGVPADQLRVIFAG 47 (76)
Confidence 3456666777889999998887753
No 251
>2gan_A 182AA long hypothetical protein; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.10A {Pyrococcus horikoshii} SCOP: d.108.1.1
Probab=24.11 E-value=1.3e+02 Score=18.50 Aligned_cols=81 Identities=6% Similarity=-0.046 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecC-CC-----------------CCeeEEEEEeeeCCChhHHHHHH
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGG-TE-----------------DPAAYGELVSIGGLNPDVNKKLS 78 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg-~~-----------------~p~~~v~i~~~g~~~~e~~~~~~ 78 (121)
.+.+.+.+...+...+..+...+.|...++...-+.+ .. .+.++ |..+.....-+++.+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~~~v~p~~rg~Gig 124 (190)
T 2gan_A 47 FNGFREVYEPFLKFRLSQEFDELYTYQKDNRIIGTIALVYKRIKEKGIWWVPEELMNEKVGL--IEFFVVDPEFQGKGIG 124 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEEEEEESSCEEEEEEEECSCGGGTCCTTCCGGGCSTTEEE--EEEEEECTTSTTSSHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEEEEEECCEEEEEEEEEecccccccccccccccCCCceEE--EEEEEECHHHcCCCHH
Confidence 4556556666666656666666666666665444432 11 12444 4434433344556666
Q ss_pred HHHHHHHHHHhC-CCCCeEEEE
Q 033334 79 AAISAILEKKLS-VPKSRFFIK 99 (121)
Q Consensus 79 ~~i~~~l~~~lg-i~~~ri~i~ 99 (121)
+++.+.+.+.+. ....++++.
T Consensus 125 ~~ll~~~~~~~~~~g~~~i~l~ 146 (190)
T 2gan_A 125 STLLEFAVKRLRSLGKDPYVVT 146 (190)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEe
Confidence 666666555431 123455554
No 252
>1b4u_B LIGA, LIGB, protocatechuate 4,5-dioxygenase; extradiol type dioxygenase, non-heme iron protein; HET: DHB; 2.20A {Sphingomonas paucimobilis} SCOP: c.56.6.1 PDB: 1bou_B
Probab=23.94 E-value=1.9e+02 Score=20.37 Aligned_cols=43 Identities=7% Similarity=-0.023 Sum_probs=29.3
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHHHHhCC--CCcEEEEEEe
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVANIIGK--PEAYVMIVLK 44 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~k--p~~~i~v~v~ 44 (121)
|++.|.+|...++...-+-+-++.++++++..+ ..+.+.|--.
T Consensus 146 pVVpisv~~~~~p~~~~~~~~~lG~aL~~~~~~~~~d~~VlIIgS 190 (302)
T 1b4u_B 146 KVIPFPVNVVTYPPPSGKRCFALGDSIRAAVESFPEDLNVHVWGT 190 (302)
T ss_dssp EEEEEEBCCSSSCCCCHHHHHHHHHHHHHHHHTSSSCCEEEEEEE
T ss_pred cEEEEeecCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 788899888765432346667888999888754 4556666444
No 253
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=23.84 E-value=69 Score=26.62 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHh---CCCCCeEEEEEEeCC--CCCceeCCc
Q 033334 77 LSAAISAILEKKL---SVPKSRFFIKFYDTK--AHQSREHAQ 113 (121)
Q Consensus 77 ~~~~i~~~l~~~l---gi~~~ri~i~f~~~~--~~~~g~~G~ 113 (121)
..-.+.....+.| |||.++|.|...|.+ |..+|-.|+
T Consensus 659 ~~T~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~gS 700 (907)
T 1dgj_A 659 ADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGS 700 (907)
T ss_dssp HHHHHHHHHHHHTGGGTCCGGGEEEEESBTTTSCCCCCSCTT
T ss_pred HHHHHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCccc
Confidence 4455778888899 999999999998875 344444444
No 254
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=23.83 E-value=44 Score=19.34 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=20.3
Q ss_pred CCcChHHHHHHHHHHHHHHhCCCCc
Q 033334 13 DGVDTSSILSEATSTVANIIGKPEA 37 (121)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~~~kp~~ 37 (121)
++.+++.+.+.+++++....+.+..
T Consensus 50 ~~~qR~~iAe~Fa~AL~~Svk~~~~ 74 (83)
T 2jrx_A 50 APAQRQAIANSFARALQSSINEDKA 74 (83)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCSSCS
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCch
Confidence 4567899999999999988877543
No 255
>2ibf_B Invasin IPAA, 70 kDa antigen; cell adhesion, structural protein; 3.20A {Shigella flexneri} PDB: 2hsq_B
Probab=23.78 E-value=48 Score=14.39 Aligned_cols=14 Identities=21% Similarity=0.480 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhCC
Q 033334 21 LSEATSTVANIIGK 34 (121)
Q Consensus 21 ~~~l~~~~~~~~~k 34 (121)
.++++.++++++.|
T Consensus 8 akevssalskvlsk 21 (26)
T 2ibf_B 8 AKEVSSALSKVLSK 21 (26)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 45667777777765
No 256
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.52 E-value=35 Score=20.40 Aligned_cols=23 Identities=4% Similarity=0.124 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
+.|.+.+.+..|++++.+.+.|.
T Consensus 48 ~kL~~~y~ek~gi~~~~~rf~Fd 70 (104)
T 1wz0_A 48 SKLMKAYCERQGLSMRQIRFRFD 70 (104)
T ss_dssp HHHHHHHHHHHTCCTTTSCEESS
T ss_pred HHHHHHHHHHhCCCcceEEEEEC
Confidence 44667777889999998888875
No 257
>1oi2_A Hypothetical protein YCGT; kinase, dihydroxyacetone kinase; 1.75A {Escherichia coli} SCOP: c.119.1.2 PDB: 1oi3_A 1uod_A* 1uoe_A 3pnl_A* 3pnk_A* 3pno_A 3pnq_A 3pnm_A
Probab=23.45 E-value=2.3e+02 Score=21.05 Aligned_cols=40 Identities=8% Similarity=0.037 Sum_probs=32.9
Q ss_pred eEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 59 AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 59 ~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
..+-|...|+.+..+---++.++.+.| +..||...|+++-
T Consensus 288 v~vLVNgLG~T~~~El~iv~~~v~~~L-~~~gi~v~r~~vG 327 (366)
T 1oi2_A 288 VIALVNNLGATPLSELYGVYNRLTTRC-QQAGLTIERNLIG 327 (366)
T ss_dssp EEEEEEECBSCCHHHHHHHHHHHHHHH-HHHTCEEEEEEEE
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHH-HHCCCeEEEEeee
Confidence 445577889999888888999999999 5779999998874
No 258
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=23.45 E-value=72 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.214 Sum_probs=17.5
Q ss_pred HHHHhCCCCCeEEEEEEeCCC
Q 033334 85 LEKKLSVPKSRFFIKFYDTKA 105 (121)
Q Consensus 85 l~~~lgi~~~ri~i~f~~~~~ 105 (121)
+.+..+|+++++.|.++|++-
T Consensus 79 ~~~~yki~~~~ilVihDdldl 99 (191)
T 2z2i_A 79 LAKFYSVAPANIIVIHDDLDL 99 (191)
T ss_dssp HHHHTTCCGGGEEEEEEETTS
T ss_pred HHHHhCCCHHHEEEEecccCC
Confidence 345679999999999999864
No 259
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=23.43 E-value=52 Score=19.34 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=17.4
Q ss_pred HHHHHHHH-HHHhCCCCCeEEEEEE
Q 033334 78 SAAISAIL-EKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l-~~~lgi~~~ri~i~f~ 101 (121)
...+-+.+ ++..|+|+++..+.|.
T Consensus 44 V~~lK~~I~~~~~gip~~~QrLi~~ 68 (98)
T 4a20_A 44 ILQIKQHLISEEKASHISEIKLLLK 68 (98)
T ss_dssp HHHHHHHHHHTTSCSCGGGEEEEET
T ss_pred HHHHHHHHHHHhcCCChhhEEEEEC
Confidence 33455556 6666999999999874
No 260
>1twf_K B13.6, DNA-directed RNA polymerase II 13.6 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: d.74.3.2 PDB: 1i3q_K 1i6h_K 1k83_K* 1nik_K 1nt9_K 1pqv_K 1r5u_K 1r9s_K* 1r9t_K* 1sfo_K* 1twa_K* 1twc_K* 1i50_K* 1twg_K* 1twh_K* 1wcm_K 1y1v_K 1y1w_K 1y1y_K 1y77_K* ...
Probab=23.39 E-value=93 Score=19.17 Aligned_cols=26 Identities=19% Similarity=0.178 Sum_probs=16.6
Q ss_pred CeEEEEeCCCCCCcChHHHHHHHHHHHH
Q 033334 2 PCLNISTNVKLDGVDTSSILSEATSTVA 29 (121)
Q Consensus 2 P~i~i~tn~~~~~~~~~~~~~~l~~~~~ 29 (121)
|.++|+|..+.++ .+.|.+++.+++.
T Consensus 71 ~~lrIqT~~~~~p--~eaL~~a~~~L~~ 96 (120)
T 1twf_K 71 FKLRIQTTEGYDP--KDALKNACNSIIN 96 (120)
T ss_dssp EEEEEEECTTCCH--HHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCH--HHHHHHHHHHHHH
Confidence 5788999877654 3566666555543
No 261
>1w55_A ISPD/ISPF bifunctional enzyme; biosynthetic pathway, isoprenoids, nonmevalonate, transferase; HET: C GPP; 2.3A {Campylobacter jejuni} SCOP: c.68.1.13 d.79.5.1 PDB: 1w57_A*
Probab=23.38 E-value=45 Score=24.59 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCc
Q 033334 77 LSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQ 113 (121)
Q Consensus 77 ~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~ 113 (121)
+..++.+.+.+.||++.++|.|.-.-. +..||-|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~v~~ka~t~--e~lg~~g~ 351 (371)
T 1w55_A 317 FKQAMQSNIAHTLDLDEFRINVKATTT--EKLGFIGR 351 (371)
T ss_dssp GHHHHHHHHHHHHTCCGGGEEEEEECC--TTCHHHHT
T ss_pred HHHHHHHHHHHHhCCCcceEEEEEecC--CCCCcCCC
No 262
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=23.26 E-value=85 Score=18.53 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
++|.+.+.+..|++++.+.+.|.
T Consensus 50 ~kLm~aY~~~~g~~~~~vrF~FD 72 (97)
T 2jxx_A 50 KTLMSHYEEAMGLSGRKLSFFFD 72 (97)
T ss_dssp HHHHHHHHHHTTCSSSCCEEEET
T ss_pred HHHHHHHHHHHCCCcccEEEEEC
Confidence 44666677789999998888874
No 263
>3f8l_A HTH-type transcriptional repressor PHNF; GNTR, HUTC, regulator, UTRA, DNA-bindin transcription regulation; 1.90A {Mycobacterium smegmatis}
Probab=23.25 E-value=1.6e+02 Score=19.14 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=43.1
Q ss_pred HHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHH--HHHHHHHHHHHHHhCCCCCeEEEEEEeC
Q 033334 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNK--KLSAAISAILEKKLSVPKSRFFIKFYDT 103 (121)
Q Consensus 26 ~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~--~~~~~i~~~l~~~lgi~~~ri~i~f~~~ 103 (121)
..+++.|+.++..-.+.+. ++.+. ...|.++-+......+-+.... .+..-+.++|++. |++..+..-.+.-.
T Consensus 67 ~~ia~~L~l~~g~~v~~i~---Rlr~~-dg~Pv~~e~~ylp~~~~p~l~~~~~~~~Sly~~L~~~-g~~i~~~~~~i~a~ 141 (201)
T 3f8l_A 67 EVLAGVLGVDVGAPVLQLE---RVLTT-DGVRVGLETTKLPAQRYPGLRETFDHEASLYAEIRSR-GIAFTRTVDTIDTA 141 (201)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEEE-TTEEEEEEEEEEEGGGSTTHHHHCCTTSCHHHHHHHT-TCCCCEEEEEEEEE
T ss_pred HHHHHhcCcCCCCeEEEEE---EEEEE-CCEEEEEEEEEEeHHHCCChhhcccccCcHHHHHHhC-CCceEEEEEEEEEE
Confidence 3467778876653333332 22222 4568887776665443222222 2345688999998 99888777666554
Q ss_pred C
Q 033334 104 K 104 (121)
Q Consensus 104 ~ 104 (121)
.
T Consensus 142 ~ 142 (201)
T 3f8l_A 142 L 142 (201)
T ss_dssp C
T ss_pred c
Confidence 3
No 264
>1qd1_A Formiminotransferase-cyclodeaminase; functional dimer, alpha-beta-BETA-alpha sandwich, electrosta charged substrate tunnel; HET: FON; 1.70A {Sus scrofa} SCOP: d.58.34.1 d.58.34.1
Probab=23.24 E-value=1.9e+02 Score=21.18 Aligned_cols=27 Identities=26% Similarity=0.409 Sum_probs=24.4
Q ss_pred eeCCChhHHHHHHHHHHHHHHHHhCCC
Q 033334 66 IGGLNPDVNKKLSAAISAILEKKLSVP 92 (121)
Q Consensus 66 ~g~~~~e~~~~~~~~i~~~l~~~lgi~ 92 (121)
+++.+.++.-++++.+-+.+.++|++|
T Consensus 95 l~~~tmeec~~lA~~~g~~i~~~l~VP 121 (325)
T 1qd1_A 95 VRGVTMDECVRCAQAFGQRLAEELGVP 121 (325)
T ss_dssp EESCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhcCCc
Confidence 346888999999999999999999998
No 265
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=23.09 E-value=34 Score=20.15 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEeC-CCCCceeCCceeeehhc
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYDT-KAHQSREHAQCLHAVHQ 120 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~~-~~~~~g~~G~~~~~~~~ 120 (121)
...+..+|.+.|++ +.+|+.+.+. .|. ...++++||+
T Consensus 35 ~~~~v~~lRkrL~l--~alFlyVNn~f~Ps----~d~~~~~Ly~ 72 (91)
T 3w1s_C 35 FAMVILFLKRRLKM--DHVYCYINNSFAPS----PQQNIGELWM 72 (91)
T ss_dssp HHHHHHHHHHHHTC--SCCEEEETTTBCCC----TTSBHHHHHH
T ss_pred HHHHHHHHHHhhCC--ceEEEEECCccCCC----cccHHHHHHH
Confidence 44578899999998 7888887652 121 2345556654
No 266
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* 2xz0_D* 2xz1_C*
Probab=23.02 E-value=67 Score=17.39 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHhCCCCC
Q 033334 75 KKLSAAISAILEKKLSVPKS 94 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ 94 (121)
.++.+.+.+.+.+.+|++++
T Consensus 3 ~~i~~~l~~i~~~~l~~~~~ 22 (82)
T 2ava_A 3 KETIDKVSDIVKEKLALGAD 22 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHhCCCcc
Confidence 35667788889999998865
No 267
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=22.96 E-value=30 Score=25.00 Aligned_cols=28 Identities=7% Similarity=0.280 Sum_probs=14.5
Q ss_pred HHHHHHHhCCC-----CCeEEEEEEeCCCCCce
Q 033334 82 SAILEKKLSVP-----KSRFFIKFYDTKAHQSR 109 (121)
Q Consensus 82 ~~~l~~~lgi~-----~~ri~i~f~~~~~~~~g 109 (121)
.+++++.||+. .+++.+.|..+++.||.
T Consensus 226 ~~~~~~~LGl~ie~~~~d~lkf~F~~id~~d~~ 258 (315)
T 2ve7_A 226 ADLYKDRLGLEIRKIYGEKLQFIFTNIDPKNPE 258 (315)
T ss_dssp HHHHHHHSCCCCC----------CCCC---CCC
T ss_pred HHHHHHHcceEEEeccCCeEEEEEEecCCCCCC
Confidence 37788999933 48899999999999986
No 268
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=22.66 E-value=74 Score=21.34 Aligned_cols=21 Identities=0% Similarity=0.119 Sum_probs=17.1
Q ss_pred HHHHhCCCCCeEEEEEEeCCC
Q 033334 85 LEKKLSVPKSRFFIKFYDTKA 105 (121)
Q Consensus 85 l~~~lgi~~~ri~i~f~~~~~ 105 (121)
+.+.++|+++++.|.++|++-
T Consensus 77 ~~~~yki~~~~ilVihDdldl 97 (193)
T 2pth_A 77 MASFFRINPDEILVAHDELDL 97 (193)
T ss_dssp HHHHHTCCGGGEEEEEEETTS
T ss_pred HHHHhCCCHHHEEEEecccCC
Confidence 334668999999999999864
No 269
>1iv3_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; isoprenoid, non-mevalonate, riken structural genomics/proteomics initiative, RSGI; 1.52A {Thermus thermophilus} SCOP: d.79.5.1 PDB: 1iv2_A 1iv4_A* 1iv1_A
Probab=22.61 E-value=1.6e+02 Score=18.99 Aligned_cols=33 Identities=9% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceee
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMS 50 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~ 50 (121)
.....++.+.+|++++-|.+.|.|.-.+.+.+-
T Consensus 106 ~p~~~~m~~~ia~~L~~~~~~V~vKAtT~E~LG 138 (152)
T 1iv3_A 106 GPHRKALVDSLSRLMRLPQDRIGLTFKTSEGLA 138 (152)
T ss_dssp GGGHHHHHHHHHHHHTCCGGGEEEEEECCTTSS
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEEecCCCCC
Confidence 456788999999999999999999988777654
No 270
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=22.59 E-value=88 Score=20.71 Aligned_cols=36 Identities=17% Similarity=0.017 Sum_probs=27.0
Q ss_pred CCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCC
Q 033334 56 DPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSV 91 (121)
Q Consensus 56 ~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi 91 (121)
..+--++|.....++++++.++...+++-.-..-|.
T Consensus 69 ~lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~ 104 (185)
T 2ns6_A 69 RLFKEVEFALPVELTLDQQKALASEFAQHLTGAERL 104 (185)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTC
T ss_pred eEEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456677888888899999999988777665544454
No 271
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=22.57 E-value=1e+02 Score=17.80 Aligned_cols=21 Identities=10% Similarity=0.148 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCCCC-eEEEEEE
Q 033334 81 ISAILEKKLSVPKS-RFFIKFY 101 (121)
Q Consensus 81 i~~~l~~~lgi~~~-ri~i~f~ 101 (121)
+.+.+.+.-||+++ +|+..|.
T Consensus 35 Li~ayc~~~~I~~~~~IrllFD 56 (82)
T 3goe_A 35 LIKRYCTEVKISFHERIRLEFE 56 (82)
T ss_dssp HHHHHHHHHTCCCCTTCEEEET
T ss_pred HHHHHHHHcCCCcCceEEEEEc
Confidence 44445556699999 9999885
No 272
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=22.52 E-value=2.7e+02 Score=21.44 Aligned_cols=51 Identities=12% Similarity=0.259 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeE
Q 033334 17 TSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 17 ~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
+++-..-.-+++.+.+|-|.+++.|++..+ +. +-.++-.+.+|+|++||
T Consensus 104 K~eAI~~AwE~LT~~lgl~~~rL~vTv~~~-----------------------D~--------Ea~~iW~~~~G~p~~rI 152 (465)
T 1yfs_A 104 KKEAIEYAWEFVTEVLKLPKEKLYVSVYKD-----------------------DE--------EAYRIWNEHIGIPSERI 152 (465)
T ss_dssp HHHHHHHHHHHHHHTSCCCGGGEEEEEETT-----------------------CH--------HHHHHHHTTTCCCGGGE
T ss_pred HHHHHHHHHHHHHhhcCCCHHHeEEEEeCC-----------------------CH--------HHHHHHHHhcCCCHHHe
Confidence 567777778889899999999999988753 22 23556667789999998
Q ss_pred EE
Q 033334 97 FI 98 (121)
Q Consensus 97 ~i 98 (121)
.-
T Consensus 153 ~~ 154 (465)
T 1yfs_A 153 WR 154 (465)
T ss_dssp EE
T ss_pred ee
Confidence 64
No 273
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A
Probab=22.33 E-value=84 Score=18.75 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=17.4
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCC
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPK 93 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~ 93 (121)
++++...+-.+..++..+++||||+
T Consensus 54 l~~~~~~~n~~~af~~Ae~~lgi~~ 78 (109)
T 1bkr_A 54 LKKSNAHYNLQNAFNLAEQHLGLTK 78 (109)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCCCC
T ss_pred cCcCCHHHHHHHHHHHHHHHcCCCc
Confidence 4444555556667788888999984
No 274
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=22.32 E-value=97 Score=18.26 Aligned_cols=24 Identities=8% Similarity=0.083 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 79 AAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
..+.+.+++..||++++....|.-
T Consensus 37 ~~~ke~V~eqTgIp~~~Q~LL~eg 60 (94)
T 4efo_A 37 TIFHELVYKQTKIISSNQELIYEG 60 (94)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEETT
T ss_pred HHHHHHHHHHhCCCHHHHHHHhCC
Confidence 447788899999999988777643
No 275
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=22.30 E-value=1.3e+02 Score=20.30 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=26.4
Q ss_pred EEeeeCCChhHHHHHHHHHHHHHHHHhCCC
Q 033334 63 LVSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (121)
Q Consensus 63 i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~ 92 (121)
|-.+||.+++.-..|.+.|.+.....+|=.
T Consensus 5 iGilGGmg~~at~~~~~~i~~~~~~~~~~~ 34 (231)
T 3ojc_A 5 LGLIGGMSWESTIPYYRMINQHVKAQLGGL 34 (231)
T ss_dssp EEEEECTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEccCCHHHHHHHHHHHHHHhHHhcCCC
Confidence 457899999999999999999999888744
No 276
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=22.28 E-value=91 Score=19.15 Aligned_cols=23 Identities=17% Similarity=0.070 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..|.+.+++..|||+++..+.|.
T Consensus 25 ~~lK~kI~~~egIP~~qQrLi~~ 47 (118)
T 2fnj_B 25 FELKRIVEGILKRPPEEQRLYKD 47 (118)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHhCCCHHHeEEEEC
Confidence 45667778888999999998865
No 277
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=22.27 E-value=85 Score=21.24 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 75 KKLSAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 75 ~~~~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+.+++.+.+.+++|+++++|+..-.
T Consensus 200 ~~m~~av~~~l~~~~G~~~~~i~~e~f 226 (252)
T 2gpj_A 200 FNSMRALRRHFKQAHALPKSHFYTSSY 226 (252)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCHHHeEEEEE
Confidence 456777888888789999999987543
No 278
>2kx2_A MTH1821, putative uncharacterized protein; structural genomics, U function, structural genomics consortium, SGC; NMR {Methanobacterium thermoautotrophicum}
Probab=22.12 E-value=1.3e+02 Score=17.71 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=30.1
Q ss_pred ecCCCCCe-eEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 51 FGGTEDPA-AYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 51 ~gg~~~p~-~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
||-+.+.+ -||.-. +.|++.++.+.+.+ .+...+-+...+.+|+..
T Consensus 12 yG~~~d~~~~yV~y~-vsgl~e~~~~kL~~----~le~~~~~~ng~L~it~~ 58 (96)
T 2kx2_A 12 FGFREDMGLNYVRYR-VSGLDEELTEKLIE----RLDEDTERDDGDLIITVF 58 (96)
T ss_dssp EEEETTTTEEEEEEE-EESCCHHHHHHHHH----HHCSEEEEETTEEEEECC
T ss_pred cCcCCCCcceEEEEE-ecCCCHHHHHHHHH----hccCceEEecCcEEEEEE
Confidence 45555665 555555 45699887666544 566777788888887754
No 279
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=22.09 E-value=89 Score=19.26 Aligned_cols=28 Identities=7% Similarity=0.094 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCeEEEE
Q 033334 71 PDVNKKLSAAISAILEKKLSVPKSRFFIK 99 (121)
Q Consensus 71 ~e~~~~~~~~i~~~l~~~lgi~~~ri~i~ 99 (121)
.+.-.+-+.++.++|.+. ||+++|+.+.
T Consensus 59 ~~LS~~RA~aV~~~L~~~-Gv~~~ri~~~ 86 (138)
T 3cyp_B 59 YELAANRAYRVMKVLIQY-GVNPNQLSFS 86 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHc-CCCHHHEEEE
Confidence 344444556688888877 9999998664
No 280
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=22.03 E-value=78 Score=15.08 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=14.0
Q ss_pred eeCCChhHHHHHHHHHHH
Q 033334 66 IGGLNPDVNKKLSAAISA 83 (121)
Q Consensus 66 ~g~~~~e~~~~~~~~i~~ 83 (121)
..+++.+|+..|.+.|.+
T Consensus 15 ~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 15 DPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp CTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHhHHHHHhc
Confidence 356889999999887754
No 281
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis} SCOP: a.28.1.1
Probab=21.91 E-value=81 Score=18.67 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCeE
Q 033334 74 NKKLSAAISAILEKKLSVPKSRF 96 (121)
Q Consensus 74 ~~~~~~~i~~~l~~~lgi~~~ri 96 (121)
+..+...+.+.+.+.+|++++.+
T Consensus 5 ~~~i~~~l~~il~~~l~~~~~~i 27 (115)
T 1klp_A 5 QEEIIAGIAEIIEEVTGIEPSEI 27 (115)
T ss_dssp HHHHHHHHHHHHHHHTCCCTTTC
T ss_pred HHHHHHHHHHHHHHHhCcCHHhC
Confidence 34577888999999999987654
No 282
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=21.89 E-value=54 Score=19.80 Aligned_cols=39 Identities=8% Similarity=0.183 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCCCCCe-EEEEEEeCCCCCceeCCceeeehhc
Q 033334 78 SAAISAILEKKLSVPKSR-FFIKFYDTKAHQSREHAQCLHAVHQ 120 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~r-i~i~f~~~~~~~~g~~G~~~~~~~~ 120 (121)
...+..++.+.|+++++. +|+.+...-+ -...++++||+
T Consensus 56 v~~~~~~iRk~l~l~~~~alfl~vn~~~p----~~~~~m~~LY~ 95 (110)
T 2r2q_A 56 VGQFYFLIRKRIHLRPEDALFFFVNNTIP----PTSATMGQLYE 95 (110)
T ss_dssp HHHHHHHHHHHTTCCTTSCCEEEBTTBCC----CTTSBHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEECCEec----CccChHHHHHH
Confidence 445778889999998764 6775444322 23567777775
No 283
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=21.79 E-value=95 Score=19.13 Aligned_cols=23 Identities=17% Similarity=0.075 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 79 AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 79 ~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+.+.+++..|||+++..+.|.
T Consensus 25 ~~lK~kI~~~~giPp~qQrLI~~ 47 (118)
T 4ajy_B 25 FELKRIVEGILKRPPDEQRLYKD 47 (118)
T ss_dssp HHHHHHHHHHHCCCGGGEEEEET
T ss_pred HHHHHHHHHHHCCCHHHeEEEeC
Confidence 34666778888999999998875
No 284
>1xkr_A Chemotaxis protein CHEC; signal transduction, protein phosphatase, attractant; 1.75A {Thermotoga maritima} SCOP: d.252.1.1 PDB: 2f9z_A
Probab=21.76 E-value=1.7e+02 Score=18.96 Aligned_cols=66 Identities=17% Similarity=0.106 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCCcE----EEEEEeCCceeeecCCCCCeeEEEEEeeeCCC----hhHHHHHHHHHHHH
Q 033334 19 SILSEATSTVANIIGKPEAY----VMIVLKGSVPMSFGGTEDPAAYGELVSIGGLN----PDVNKKLSAAISAI 84 (121)
Q Consensus 19 ~~~~~l~~~~~~~~~kp~~~----i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~----~e~~~~~~~~i~~~ 84 (121)
.+...++..++..+++..+- +.+.-...-...+++.++|++.+.+...|+++ -.-..+.+..+.+.
T Consensus 18 i~~~~aa~~Ls~~l~~~v~i~vp~v~~~~~~e~~~~l~~~~~~~~~v~i~~~G~l~G~~ll~~~~~~a~~i~~~ 91 (206)
T 1xkr_A 18 IGAGNAATAISYMINKKVEISVPNVEIVPISKVIFIAKDPEEIVVGVKMPVTGDIEGSVLLIMGTTVVKKILEI 91 (206)
T ss_dssp HHHHHHHHHHHHHHTSCEEEECCCEEEEEGGGGGGGSSCTTCEEEEEEEEEEESSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcEEEECCeEEEEcHHHHHHHhcCCCCcEEEEEEEeecCCCeEEEEEECHHHHHHHHHH
Confidence 34556788899999886542 22211122223345556777777777665543 22334444444443
No 285
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=21.66 E-value=82 Score=21.13 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=17.9
Q ss_pred HHHHHhCCCCCeEEEEEEeCCC
Q 033334 84 ILEKKLSVPKSRFFIKFYDTKA 105 (121)
Q Consensus 84 ~l~~~lgi~~~ri~i~f~~~~~ 105 (121)
.+.+.++|+++++.|.++|++-
T Consensus 78 ~~~~~~ki~~~~ilVihDdldL 99 (193)
T 4hoy_A 78 PFSKFYQIAPEAILIAHDELDM 99 (193)
T ss_dssp HHHHHTTCCGGGEEEEEEETTS
T ss_pred HHHHHcCCCchheEEeeecccc
Confidence 3455679999999999999864
No 286
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=21.59 E-value=1.1e+02 Score=17.48 Aligned_cols=24 Identities=4% Similarity=0.181 Sum_probs=16.5
Q ss_pred CCCCCCcChHHHHHHHHHHHHHHh
Q 033334 9 NVKLDGVDTSSILSEATSTVANII 32 (121)
Q Consensus 9 n~~~~~~~~~~~~~~l~~~~~~~~ 32 (121)
|.+.++.+++.+.+.+++++....
T Consensus 46 n~~V~~~qR~~iAe~Fa~AL~~Sv 69 (80)
T 2juz_A 46 TTSVPQTQCEALAQAFSNSLINAV 69 (80)
T ss_dssp TTSSCSTTHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHH
Confidence 334455678888888888876654
No 287
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=21.57 E-value=2.2e+02 Score=20.19 Aligned_cols=65 Identities=9% Similarity=0.187 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCC--CCCeeEEEEEeeeC--CChhHHHHHHHHHHHHHHH
Q 033334 19 SILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGT--EDPAAYGELVSIGG--LNPDVNKKLSAAISAILEK 87 (121)
Q Consensus 19 ~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~--~~p~~~v~i~~~g~--~~~e~~~~~~~~i~~~l~~ 87 (121)
.+++.+-+.+.+.-..+.+ .-|+++.- .+|-+ ..|+.||||=|... .+++.-+.++++|.+.+..
T Consensus 115 ~~~~~~L~~l~~~~~~~~~-fev~~EAT---HHGPt~~~~Ps~FVEIGSte~eW~d~~a~~~vA~av~~~l~~ 183 (282)
T 1yqe_A 115 QTMKNYVLALRERLDRKPE-FEFTMEVT---HHGPSEISKPSAFYEIGSTEEEWKDREAAEVVAEAMLDAIRA 183 (282)
T ss_dssp HHHHHHHHHHHTTGGGSTT-CEEEECCS---CSSCCCCCSCEEEEEEEESHHHHTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCCC-cEEEEEcc---ccCCCCCCCCcEEEEeCCCHHHhCChHHHHHHHHHHHHHhcc
Confidence 3455555666665423455 44545431 23434 36999999988753 6777777788877777763
No 288
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=21.49 E-value=1.1e+02 Score=19.76 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEE
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
...+.+.+++..|+|+++..+.|.
T Consensus 23 V~~LK~~I~~~~gip~~~QrLi~~ 46 (169)
T 3l0w_B 23 IDNVKSKIQDKEGIPPDQQRLIFA 46 (169)
T ss_dssp HHHHHHHHHHHHCCCTTTEEEEET
T ss_pred HHHHHHHHHHHHCcCHHHEEEEEC
Confidence 344666677788999999999885
No 289
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=21.19 E-value=1.3e+02 Score=17.43 Aligned_cols=34 Identities=12% Similarity=0.162 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeC
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYDTKAHQSREH 111 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~ 111 (121)
.+.+...+++...++...+.|.|.|.+.+..-++
T Consensus 30 fe~f~~lv~~lh~L~~~~f~i~Y~D~dGDLlpIn 63 (86)
T 1wmh_B 30 FQEFSRLLRAVHQIPGLDVLLGYTDAHGDLLPLT 63 (86)
T ss_dssp HHHHHHHHHHHTTCTTCCCEEEEECTTSCEEECC
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEECCCCCEeeec
Confidence 4556777777778898999999999766655544
No 290
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=20.91 E-value=1.1e+02 Score=18.34 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=24.5
Q ss_pred EEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 60 YGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 60 ~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
.++|.- |+-+|.. +.|.+-|.+.++++++.|+|.=..
T Consensus 20 ~~~v~H-~~~tpsk-----~eirekLAk~~~~~~~~Vvv~~~~ 56 (101)
T 1xn9_A 20 DFIVKY-EGSTPSR-----NDVRNKLAAMLNAPLELLVIQRIK 56 (101)
T ss_dssp EEEEEC-SSSCCCH-----HHHHHHHHHHTTCCTTTEEEEEEE
T ss_pred EEEEEc-CCCCCCH-----HHHHHHHHHHHCCCCCEEEEEeeE
Confidence 344444 5444444 346777888999999988887555
No 291
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=20.87 E-value=69 Score=18.93 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEe
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYD 102 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~ 102 (121)
...+..+|.+.|+++ .+|+.+.+
T Consensus 40 ~~~~~~~lRkrL~l~--alFlyvn~ 62 (96)
T 1wz3_A 40 FANVIDFLRRQLHSD--SLFVYVNS 62 (96)
T ss_dssp THHHHHHHHHHHTCS--SCEEEEEE
T ss_pred HHHHHHHHHHhcCCc--eEEEEECC
Confidence 345788889999988 88887666
No 292
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=20.77 E-value=95 Score=19.32 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhCCCCCeEEEE-E
Q 033334 78 SAAISAILEKKLSVPKSRFFIK-F 100 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~-f 100 (121)
...+.+.+++..|+|+++..+. |
T Consensus 25 V~~lK~~I~~~~gip~~~QrL~~~ 48 (159)
T 3rt3_B 25 VSELKAQITQKIGVHAFQQRLAVH 48 (159)
T ss_dssp HHHHHHHHHHHHCCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCHHHEEEEEc
Confidence 4456777788889999999988 5
No 293
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=20.71 E-value=58 Score=19.04 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCCCC-eEEEEEEeC-CCCCceeCCceeeehhc
Q 033334 78 SAAISAILEKKLSVPKS-RFFIKFYDT-KAHQSREHAQCLHAVHQ 120 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~-ri~i~f~~~-~~~~~g~~G~~~~~~~~ 120 (121)
...+..+|.+.|+++++ .+|+.+.+. .|. ...++++||+
T Consensus 32 v~~~~~~lRkrL~l~~~~alFlyVnn~~~P~----~d~~~~~Ly~ 72 (91)
T 4gdk_A 32 IQGLIDFIKKFLKLVASEQLFIYVNQSFAPS----PDQEVGTLYE 72 (91)
T ss_dssp HHHHHHHHHHHTTCCSSSCCEEEETTTBCCC----TTCBHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCeEEEEECCccCCC----hhhHHHHHHH
Confidence 34578899999999865 677776552 121 2346666664
No 294
>2nlv_A XISI protein-like; XISI-like protein, structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.30A {Anabaena variabilis} SCOP: d.326.1.1
Probab=20.70 E-value=14 Score=22.79 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=13.2
Q ss_pred hCCCCCeEEEEEEeC
Q 033334 89 LSVPKSRFFIKFYDT 103 (121)
Q Consensus 89 lgi~~~ri~i~f~~~ 103 (121)
+|||+++|.+-|++.
T Consensus 87 ~GVpk~dIVLgF~~P 101 (112)
T 2nlv_A 87 MGVPREDIVLGLQAP 101 (112)
T ss_dssp TTCCGGGEEETTSCG
T ss_pred cCCCHHHEEEccCCc
Confidence 599999999998865
No 295
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=20.65 E-value=2e+02 Score=19.25 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=22.1
Q ss_pred EeeeCCChhHHHHHHHHHHHHHHHHhCCC
Q 033334 64 VSIGGLNPDVNKKLSAAISAILEKKLSVP 92 (121)
Q Consensus 64 ~~~g~~~~e~~~~~~~~i~~~l~~~lgi~ 92 (121)
.+.|..+.++-+.-.+.+.+.|++ +|++
T Consensus 70 v~TGakS~e~a~~a~~~i~~~L~~-lG~~ 97 (198)
T 1mp9_A 70 VVTGAKSTDELIKAVKRIIKTLKK-YGMQ 97 (198)
T ss_dssp EEECCSSHHHHHHHHHHHHHHHHH-TTCC
T ss_pred EEeccCCHHHHHHHHHHHHHHHHH-cCCc
Confidence 344668888888888888888876 8986
No 296
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*
Probab=20.63 E-value=95 Score=21.93 Aligned_cols=34 Identities=9% Similarity=0.054 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeCCceeeeh
Q 033334 78 SAAISAILEKKLSVPKSRFFIKFYDTKAHQSREHAQCLHAV 118 (121)
Q Consensus 78 ~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~G~~~~~~ 118 (121)
+..+..++.+.||+++++|.. .-||-.|.++=-+
T Consensus 149 ~~r~~~~la~~lgv~~~~v~~-------~v~G~Hg~t~~p~ 182 (309)
T 1ur5_A 149 AARYRTFIAMEAGVSVEDVQA-------MLMGGHGDEMVPL 182 (309)
T ss_dssp HHHHHHHHHHHHTCCGGGEEE-------CCEECSGGGEECC
T ss_pred HHHHHHHHHHHhCCChhheeE-------EEecCcCCceeee
Confidence 456778889999999998875 3466555444333
No 297
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=20.53 E-value=1.9e+02 Score=19.13 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEeCCCCCceeC
Q 033334 77 LSAAISAILEKKLSVPKSRFFIKFYDTKAHQSREH 111 (121)
Q Consensus 77 ~~~~i~~~l~~~lgi~~~ri~i~f~~~~~~~~g~~ 111 (121)
.-..+.+.+++.+|.+++.+.|+++.-..+..|+.
T Consensus 83 ~L~~l~~~~~~~~g~~~n~~LvN~Y~~G~d~i~~H 117 (204)
T 3s57_A 83 VLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEH 117 (204)
T ss_dssp HHHHHHHHHHHHHCCCCSEEEEEEESSTTCCEEEE
T ss_pred HHHHHHHHHHHHhCCCCceeEEEEECCCCCcccce
Confidence 44456677777889999999999998755445543
No 298
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=20.49 E-value=2.2e+02 Score=19.62 Aligned_cols=75 Identities=11% Similarity=0.054 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEE--eeeCCChhHHHHHHHHHHHHHHHHhCCCCCe
Q 033334 18 SSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELV--SIGGLNPDVNKKLSAAISAILEKKLSVPKSR 95 (121)
Q Consensus 18 ~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~--~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~r 95 (121)
++..+++.+.+.+..|.- +.--+++ +..| |..+++++ .-+..+.++-.+..+++.+.++++++. .+
T Consensus 205 ~~~~~~i~~~i~~~~~V~-~v~~l~~-----~~~G----~~~~v~~hv~v~~~~~~~~~~~i~~~i~~~l~~~~~~--~~ 272 (283)
T 3h90_A 205 DEERQEIIDIVTSWPGVS-GAHDLRT-----RQSG----PTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFPG--SD 272 (283)
T ss_dssp HHHHHHHHHHHHHSSSCS-EEEEEEE-----EEET----TEEEEEEEEECCTTCBHHHHHHHHHHHHHHHHHHSTT--CE
T ss_pred HHHHHHHHHHHhcCCCcc-cceeeEE-----EEEC----CcEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCC--Ce
Confidence 456777777776654421 1111111 2233 23455555 334567777788999999999998876 67
Q ss_pred EEEEEEeCC
Q 033334 96 FFIKFYDTK 104 (121)
Q Consensus 96 i~i~f~~~~ 104 (121)
+.|.+++.+
T Consensus 273 v~ih~ep~~ 281 (283)
T 3h90_A 273 VIIHQDPCS 281 (283)
T ss_dssp EEEEEECSC
T ss_pred EEEEeccCC
Confidence 888887654
No 299
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=20.39 E-value=89 Score=19.54 Aligned_cols=75 Identities=12% Similarity=0.046 Sum_probs=45.2
Q ss_pred EEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhHHHHHHHHHHHHHHHHhCCCCCeEEEEEEe-CCCCCceeCCceee
Q 033334 38 YVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDVNKKLSAAISAILEKKLSVPKSRFFIKFYD-TKAHQSREHAQCLH 116 (121)
Q Consensus 38 ~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i~f~~-~~~~~~g~~G~~~~ 116 (121)
-.++.|.+|..+.... +.--+.|...|--.||..+.+..+-.+++.+.+.- ..+|.+.+.. ...+.+ |+++.
T Consensus 12 ~~V~~V~DGDTi~v~~---~g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~-g~~V~~~~d~~~~~D~y---gR~la 84 (143)
T 4eqp_A 12 ATLIKAIDGDTVKLMY---KGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVEN-AKKDEVEFDKGQRTDKY---GRGLA 84 (143)
T ss_dssp EEEEEECSSSEEEEEE---TTEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHH-CSCEEEECCSSCSBCTT---SCEEE
T ss_pred EEEEEEECCCEEEEEe---CCcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhc-CCeEEEEEccccccCCC---CCEEE
Confidence 4556677777776652 11235666666556777777887778888877631 2467777643 223333 46666
Q ss_pred ehh
Q 033334 117 AVH 119 (121)
Q Consensus 117 ~~~ 119 (121)
++|
T Consensus 85 ~v~ 87 (143)
T 4eqp_A 85 YIY 87 (143)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 300
>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}
Probab=20.39 E-value=2.1e+02 Score=19.51 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=48.2
Q ss_pred eEEEEeCCCCCCcChHHHHHHHHHHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCC-ChhHHHHHHHHH
Q 033334 3 CLNISTNVKLDGVDTSSILSEATSTVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGL-NPDVNKKLSAAI 81 (121)
Q Consensus 3 ~i~i~tn~~~~~~~~~~~~~~l~~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~-~~e~~~~~~~~i 81 (121)
+..|+.|-+....-..++..+|.+++.++-..|.-++.|.--.+..|+-|+.-.- .... +.+....+....
T Consensus 16 v~~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~--------~~~~~~~~~~~~~~~~~ 87 (261)
T 3pea_A 16 IAVATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKE--------FTSVTEAKQATELAQLG 87 (261)
T ss_dssp EEEEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGG--------SSTTCCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHH--------HhhcCchhHHHHHHHHH
Confidence 4567788764233356889999999988877666666665555666666654221 1111 223344454444
Q ss_pred HHHHHHHhCCCCC
Q 033334 82 SAILEKKLSVPKS 94 (121)
Q Consensus 82 ~~~l~~~lgi~~~ 94 (121)
.+++......|+.
T Consensus 88 ~~~~~~l~~~~kP 100 (261)
T 3pea_A 88 QVTFERVEKCSKP 100 (261)
T ss_dssp HHHHHHHHTCSSC
T ss_pred HHHHHHHHhCCCC
Confidence 4455555555543
No 301
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=20.33 E-value=1.4e+02 Score=19.77 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=31.5
Q ss_pred EEeeeCCChhHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeC
Q 033334 63 LVSIGGLNPDVNKKLSAAISAILEKKLSVP-KSRFFIKFYDT 103 (121)
Q Consensus 63 i~~~g~~~~e~~~~~~~~i~~~l~~~lgi~-~~ri~i~f~~~ 103 (121)
|-.+||.+++.-..|.+.|.+.....+|=. ..++.+.-.+.
T Consensus 4 iGiiGGmgp~at~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~ 45 (226)
T 2zsk_A 4 IGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINF 45 (226)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHHHHSSTTCCCCEEEEECCT
T ss_pred EEEecccCHHHHHHHHHHHHHHHHHhcCCccCCeeEEeCCCH
Confidence 456899999999999999999999888643 44555554443
No 302
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=20.27 E-value=63 Score=19.82 Aligned_cols=29 Identities=3% Similarity=0.096 Sum_probs=17.7
Q ss_pred CChhHHHHHHHHHHHHHHHHhCCCCCeEEE
Q 033334 69 LNPDVNKKLSAAISAILEKKLSVPKSRFFI 98 (121)
Q Consensus 69 ~~~e~~~~~~~~i~~~l~~~lgi~~~ri~i 98 (121)
++++...+.-+++.+++ +.+|++.+++..
T Consensus 114 R~~~l~~e~~~~f~~~~-~~~G~~~~~ii~ 142 (151)
T 1e5p_A 114 KGNALTPEENEILVQFA-HEKKIPVENILN 142 (151)
T ss_dssp SSSCCCHHHHHHHHHHH-HHTTCCGGGEEE
T ss_pred cCCCCCHHHHHHHHHHH-HHcCCCHHHEEE
Confidence 44444444445444443 477999999864
No 303
>3cnv_A Putative GNTR-family transcriptional regulator; structural genomics, bordet bronchiseptica, PSI-2, protein structure initiative; HET: MSE FLC; 2.00A {Bordetella bronchiseptica RB50} SCOP: d.190.1.2
Probab=20.21 E-value=1.6e+02 Score=17.89 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=41.1
Q ss_pred HHHHHHhCCCCcEEEEEEeCCceeeecCCCCCeeEEEEEeeeCCChhH-HHHHH---HHHHHHHHHHhCCCCCeEEEEEE
Q 033334 26 STVANIIGKPEAYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNPDV-NKKLS---AAISAILEKKLSVPKSRFFIKFY 101 (121)
Q Consensus 26 ~~~~~~~~kp~~~i~v~v~~~~~~~~gg~~~p~~~v~i~~~g~~~~e~-~~~~~---~~i~~~l~~~lgi~~~ri~i~f~ 101 (121)
..+++.|+.+...-.+.+. ++.+. ...|.++-.......+-+.. ...+. .-+.++|++.+|++..+..-.+.
T Consensus 33 ~~ia~~L~l~~~~~v~~i~---Rlr~~-d~~P~~~~~~y~p~~~~~~l~~~~~~~~~~sly~~l~~~~g~~~~~~~~~i~ 108 (162)
T 3cnv_A 33 AEIARALELRAGETVVTIR---RQLSM-NHMPTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRADEKLR 108 (162)
T ss_dssp HHHHHHHTCCTTCEEEEEE---EEEES-SSSEEEEEEEEEEGGGCTTCCHHHHHHCCCCHHHHHHHHHCCCEEEEEEEEE
T ss_pred HHHHHHcCCCCCCEEEEEE---EEEEe-CCceEEEEEEEEeHHHcCccchhhhhhccchHHHHHHHHcCCceEEEEEEEE
Confidence 3567888877654334333 22222 45787776655443322221 12233 25888999999988776555544
Q ss_pred e
Q 033334 102 D 102 (121)
Q Consensus 102 ~ 102 (121)
-
T Consensus 109 a 109 (162)
T 3cnv_A 109 A 109 (162)
T ss_dssp E
T ss_pred E
Confidence 3
No 304
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=20.11 E-value=95 Score=17.21 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHhC-CCCCeE
Q 033334 71 PDVNKKLSAAISAILEKKLS-VPKSRF 96 (121)
Q Consensus 71 ~e~~~~~~~~i~~~l~~~lg-i~~~ri 96 (121)
.+....+.+.+.+.+.+.|| ++++.+
T Consensus 15 ~~~~~~~~~~l~~~~~~~l~~~~~~~i 41 (95)
T 2ju1_A 15 AERTAELVRLVRTSTATVLGHDDPKAV 41 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCChhhC
Confidence 56667778889999999999 555543
Done!