AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on

Query Sequence

>033335
MVIKVSMNKHKSRSKALKVAVGFSGVESVALKGDDMSQIEVTGDGVDAVALTTSLRKKVG
YAEVVSVGAAGAGAGDQSMDNEKIEANPEPVVWPNYHVAAPLPHYDVCVVRDYDPYGCSI
L

High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT3G07600 AT3G07600 AT3G07600	protein from Arabidopsis thaliana	4.1e-10
BLAST match view associations BLAST with AT3G20180 AT3G20180 AT3G20180	protein from Arabidopsis thaliana	8.4e-10
BLAST match view associations BLAST with AT5G48290 AT5G48290 AT5G48290	protein from Arabidopsis thaliana	4.7e-09
BLAST match view associations BLAST with AT4G05030 AT4G05030 AT4G05030	protein from Arabidopsis thaliana	2.9e-07
BLAST match view associations BLAST with AT1G01490 AT1G01490 AT1G01490	protein from Arabidopsis thaliana	1.5e-05
BLAST match view associations BLAST with AT5G52730 AT5G52730 AT5G52730	protein from Arabidopsis thaliana	0.00031
BLAST match view associations BLAST with AT5G52740 AT5G52740 AT5G52740	protein from Arabidopsis thaliana	0.00045

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033335
        (121 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2091112 - symbol:AT3G07600 species:3702 "Arabi...   144  4.1e-10   1
TAIR|locus:2087580 - symbol:AT3G20180 "AT3G20180" species...   141  8.4e-10   1
TAIR|locus:2156253 - symbol:AT5G48290 species:3702 "Arabi...   134  4.7e-09   1
TAIR|locus:2138376 - symbol:AT4G05030 "AT4G05030" species...   117  2.9e-07   1
TAIR|locus:2025421 - symbol:AT1G01490 species:3702 "Arabi...    78  1.5e-05   2
TAIR|locus:2149679 - symbol:AT5G52730 "AT5G52730" species...    75  0.00031   2
TAIR|locus:2149584 - symbol:AT5G52740 "AT5G52740" species...    87  0.00045   1


>TAIR|locus:2091112 [details] [associations]
            symbol:AT3G07600 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0030001 EMBL:AC009176
            ProtClustDB:CLSN2684848 IPI:IPI00519941 RefSeq:NP_187417.1
            UniGene:At.18333 UniGene:At.48632 ProteinModelPortal:Q9SSF0
            SMR:Q9SSF0 EnsemblPlants:AT3G07600.1 GeneID:819951
            KEGG:ath:AT3G07600 eggNOG:NOG286763 OMA:QDPNCRI
            Genevestigator:Q9SSF0 Uniprot:Q9SSF0
        Length = 157

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 29/58 (50%), Positives = 42/58 (72%)

Query:     1 MVIKVSMNKHKSRSKALKVAVGFSGVESVALKGDDMSQIEVTGDGVDAVALTTSLRKK 58
             ++I+++M    +R+KA+K AV F GV +V +KGD  +QIEVTG  VD +AL  +LRKK
Sbjct:     5 ILIRIAMTDDTTRAKAMKTAVQFKGVNAVEIKGDHRNQIEVTGVEVDMIALINTLRKK 62


>TAIR|locus:2087580 [details] [associations]
            symbol:AT3G20180 "AT3G20180" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND]
            EMBL:CP002686 IPI:IPI00542114 RefSeq:NP_188653.1 UniGene:At.63564
            ProteinModelPortal:F4JDJ0 DNASU:821562 EnsemblPlants:AT3G20180.1
            GeneID:821562 KEGG:ath:AT3G20180 OMA:GEFQDEL PhylomeDB:F4JDJ0
            Uniprot:F4JDJ0
        Length = 118

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 29/58 (50%), Positives = 41/58 (70%)

Query:     1 MVIKVSMNKHKSRSKALKVAVGFSGVESVALKGDDMSQIEVTGDGVDAVALTTSLRKK 58
             M IK+S+N  K R KA++VAV   GV SVA++G+   ++ V GDGVD+ +L  +LRKK
Sbjct:     1 MRIKLSVNSEKCRKKAMQVAVAADGVTSVAMEGEFQDELVVVGDGVDSASLIMALRKK 58


>TAIR|locus:2156253 [details] [associations]
            symbol:AT5G48290 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0030001
            HOGENOM:HOG000237719 EMBL:BT020300 EMBL:BT020469 IPI:IPI00541268
            RefSeq:NP_568695.1 UniGene:At.28683 ProteinModelPortal:Q5PNZ7
            SMR:Q5PNZ7 EnsemblPlants:AT5G48290.1 GeneID:834882
            KEGG:ath:AT5G48290 TAIR:At5g48290 eggNOG:NOG241974
            InParanoid:Q5PNZ7 OMA:NDIGEPV PhylomeDB:Q5PNZ7
            ProtClustDB:CLSN2684848 Genevestigator:Q5PNZ7 Uniprot:Q5PNZ7
        Length = 181

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 29/58 (50%), Positives = 40/58 (68%)

Query:     1 MVIKVSMNKHKSRSKALKVAVGFSGVESVALKGDDMSQIEVTGDGVDAVALTTSLRKK 58
             ++I+V+M   K+R+KA+  AV F GV +V +KGD  +QIEVTG  VD + L   LRKK
Sbjct:     5 ILIRVTMTDDKTRAKAMTKAVQFKGVSAVEIKGDHRNQIEVTGVEVDMIPLIQILRKK 62


>TAIR|locus:2138376 [details] [associations]
            symbol:AT4G05030 "AT4G05030" species:3702 "Arabidopsis
            thaliana" [GO:0046872 "metal ion binding" evidence=ISS]
            EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161502 EMBL:AF162444
            IPI:IPI00529329 PIR:C85063 RefSeq:NP_567284.1 UniGene:At.54153
            ProteinModelPortal:Q9S9T4 SMR:Q9S9T4 EnsemblPlants:AT4G05030.1
            GeneID:825845 KEGG:ath:AT4G05030 TAIR:At4g05030 eggNOG:NOG284398
            InParanoid:Q9S9T4 OMA:YYGYYCH PhylomeDB:Q9S9T4
            ProtClustDB:CLSN2917512 ArrayExpress:Q9S9T4 Genevestigator:Q9S9T4
            Uniprot:Q9S9T4
        Length = 110

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query:     1 MVIKVSMNKHKSRSKALKVAVGFSGVESVALKGDDMSQIEVTGDGVDAVALTTSLRKK 58
             +++ VSM   K RS+ALK+    +GV  V ++G++  ++ V G+GVDA  L   LRKK
Sbjct:    38 ILMSVSMRCDKCRSEALKIGAKTTGVTFVGIEGEEKDKVVVIGEGVDAACLVVRLRKK 95


>TAIR|locus:2025421 [details] [associations]
            symbol:AT1G01490 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0030001 "metal ion
            transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002684
            GO:GO:0046872 GO:GO:0030001 EMBL:AY063805 EMBL:AY091276 EMBL:Y10084
            IPI:IPI00534476 RefSeq:NP_001030928.1 RefSeq:NP_171656.1
            UniGene:At.27454 ProteinModelPortal:O03982 PaxDb:O03982
            PRIDE:O03982 EnsemblPlants:AT1G01490.1 EnsemblPlants:AT1G01490.2
            GeneID:839440 KEGG:ath:AT1G01490 TAIR:At1g01490 eggNOG:NOG282717
            InParanoid:O03982 OMA:TYYYAQS PhylomeDB:O03982
            ProtClustDB:CLSN2912783 ArrayExpress:O03982 Genevestigator:O03982
            Uniprot:O03982
        Length = 177

 Score = 78 (32.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 19/58 (32%), Positives = 36/58 (62%)

Query:     1 MVIKVSMNKHKSRSKALKVAVGFSGVESVALKGDDMSQIEVTGDG-VDAVALTTSLRK 57
             +V+K+ ++  +++ KALK      G++S+A+   DM + ++T  G VD V + + LRK
Sbjct:     4 IVLKLDLHDDRAKQKALKTVSTLPGIDSIAM---DMKEKKLTVIGTVDPVNVVSKLRK 58

 Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query:    85 EANPEPVVWPNYHV 98
             +A P+PVV P  HV
Sbjct:   131 QAQPQPVVPPPDHV 144


>TAIR|locus:2149679 [details] [associations]
            symbol:AT5G52730 "AT5G52730" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0046872
            "metal ion binding" evidence=ISS] EMBL:CP002688
            GenomeReviews:BA000015_GR EMBL:AB025606 IPI:IPI00534634
            RefSeq:NP_200085.1 UniGene:At.55512 ProteinModelPortal:Q9LTE4
            EnsemblPlants:AT5G52730.1 GeneID:835350 KEGG:ath:AT5G52730
            TAIR:At5g52730 Genevestigator:Q9LTE4 Uniprot:Q9LTE4
        Length = 185

 Score = 75 (31.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 19/57 (33%), Positives = 35/57 (61%)

Query:     1 MVIKVSMNKHKSRSKALKVAVGFSGVESVALKGDDMSQIEVTGDGVDAVALTTSLRK 57
             +V K+ +++ K + KA+K+  GFSGV S+ +  +   ++ VTG+  D   +T  L+K
Sbjct:    44 VVFKLEVDERKKK-KAMKIVCGFSGVTSLNVMEE--GKLTVTGE-FDNYEMTKKLKK 96

 Score = 37 (18.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query:    94 PNYHVAAPLPHYDVCVVRDYDPYGCSIL 121
             P  H    +PH     VR  +  GC I+
Sbjct:   158 PRTHSRPSIPHARPSRVRGENSDGCIIM 185


>TAIR|locus:2149584 [details] [associations]
            symbol:AT5G52740 "AT5G52740" species:3702 "Arabidopsis
            thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0030001
            "metal ion transport" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA;ISS] [GO:0009627 "systemic acquired resistance"
            evidence=RCA] [GO:0034976 "response to endoplasmic reticulum
            stress" evidence=RCA] InterPro:IPR006121 Pfam:PF00403 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0046872 GO:GO:0030001 EMBL:AB025606
            HOGENOM:HOG000237719 IPI:IPI00529707 RefSeq:NP_200086.1
            UniGene:At.55513 ProteinModelPortal:Q9LTE3 SMR:Q9LTE3
            EnsemblPlants:AT5G52740.1 GeneID:835351 KEGG:ath:AT5G52740
            TAIR:At5g52740 eggNOG:NOG241888 InParanoid:Q9LTE3 OMA:CHTEFIS
            PhylomeDB:Q9LTE3 ProtClustDB:CLSN2916212 Genevestigator:Q9LTE3
            Uniprot:Q9LTE3
        Length = 118

 Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
 Identities = 29/105 (27%), Positives = 46/105 (43%)

Query:     1 MVIKVSMNKHKSRSKALKVAVGFSGVESVALKGDDMSQIEVTGDGVDAVALTTSLRKKXX 60
             +V+K+ ++  K++ KA+      SGV SV +K     ++ VTG+ +DA  +   L KK  
Sbjct:     4 VVLKLDVHCEKTKQKAMSTVCCLSGVNSVEVKD---GKLTVTGE-IDAYMIVKKL-KKIC 58

Query:    61 XXXXXXXXXXXXXXXDQSMDNEKIEANPEPVVWPNYHVAAPLPHY 105
                             +  D +K E  P  V+   YH   P P Y
Sbjct:    59 HTEFISVGPVKEPEKKKPDDPKKPETKPPDVI---YHYVPPCPPY 100


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.385    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       104   0.00091  102 3  11 23  0.46    30
                                                     29  0.50    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  117 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.25u 0.13s 9.38t   Elapsed:  00:00:00
  Total cpu time:  9.25u 0.13s 9.38t   Elapsed:  00:00:00
  Start:  Fri May 10 23:39:43 2013   End:  Fri May 10 23:39:43 2013

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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data