BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033335
         (121 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4VJ05|SYM_PSEU5 Methionine--tRNA ligase OS=Pseudomonas stutzeri (strain A1501)
           GN=metG PE=3 SV=2
          Length = 679

 Score = 35.0 bits (79), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 62  AEVVSVGAAGAGAGDQSMDNEKIEANPEPVVWPNYHVAAP 101
            +VV++ +  AG   +  D   +EANPEP +W  +  AAP
Sbjct: 386 GKVVNIASRCAGFIHKGNDGVMVEANPEPELWAAFQAAAP 425


>sp|P25991|SUF_DROME Protein suppressor of forked OS=Drosophila melanogaster GN=su(f)
           PE=1 SV=2
          Length = 765

 Score = 33.5 bits (75), Expect = 0.38,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 8/88 (9%)

Query: 32  KGDDMSQIEVTGDGVDAVALTTSLRKKVGYAEVVSVGAAGAGAGDQSMDNEKIEANPEPV 91
           +G + +Q+      +D    T++  K +GYAE V +     G G QS +  ++E + E  
Sbjct: 552 EGKETAQLVDRYKFLDLYPCTSTELKSIGYAENVGIILNKVGGGAQSQNTGEVETDSE-- 609

Query: 92  VWPNYHVAAPLPHYDVCVVRDYDPYGCS 119
                    PLP  D   +  + P  C+
Sbjct: 610 ------ATPPLPRPDFSQMIPFKPRPCA 631


>sp|C1DEF4|SYM_AZOVD Methionine--tRNA ligase OS=Azotobacter vinelandii (strain DJ / ATCC
           BAA-1303) GN=metG PE=3 SV=1
          Length = 681

 Score = 32.0 bits (71), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 23/40 (57%)

Query: 62  AEVVSVGAAGAGAGDQSMDNEKIEANPEPVVWPNYHVAAP 101
            +VV++ +  AG   +      ++ANPEP +W  + VAAP
Sbjct: 386 GKVVNIASRCAGFIHKGNAGLMVDANPEPELWEAFQVAAP 425


>sp|A4XS54|SYM_PSEMY Methionine--tRNA ligase OS=Pseudomonas mendocina (strain ymp)
           GN=metG PE=3 SV=1
          Length = 678

 Score = 31.6 bits (70), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 43  GDGVDAVALT-TSLRKKVG---YAEVVSVGAAGAGAGDQSMDNEKIEANPEPVVWPNYHV 98
           G GVD + L      +KV      +VV++ +  AG   +  D   + ANPEP +W  +  
Sbjct: 363 GRGVDDLDLNLEDFVQKVNSDLVGKVVNIASRCAGFIHKGNDGLLVAANPEPELWDAFQA 422

Query: 99  AAP 101
           AAP
Sbjct: 423 AAP 425


>sp|Q04DS4|GLMU_OENOB Bifunctional protein GlmU OS=Oenococcus oeni (strain ATCC BAA-331 /
           PSU-1) GN=glmU PE=3 SV=1
          Length = 426

 Score = 30.8 bits (68), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 34  DDMSQIEVTGDGVDAVALTTSLRKKVGYAEVVSVG 68
           +D+  +   G+G DA  LT  L+K  GY  V+ VG
Sbjct: 104 NDLVDLVEKGEGFDAALLTADLKKPFGYGRVIPVG 138


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.381 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,222,129
Number of Sequences: 539616
Number of extensions: 1845629
Number of successful extensions: 4244
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 4236
Number of HSP's gapped (non-prelim): 25
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)