BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033336
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 156 bits (395), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/101 (72%), Positives = 86/101 (85%)
Query: 8 ISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSK 67
+SK+EL+ AL KAKE+ SS PVVVFSKTYCGYC VK+LL Q+G S+KVVELD SDGS+
Sbjct: 1 MSKQELDAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQ 60
Query: 68 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 108
+Q+ALA WTG+ TVPNVFIGGK IGGCDTVVEKHQ +L+P
Sbjct: 61 LQSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLP 101
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 155 bits (393), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 73/100 (73%), Positives = 85/100 (85%)
Query: 9 SKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKI 68
SK+EL+ AL KAKE+ SS PVVVFSKTYCGYC VK+LL Q+G S+KVVELD SDGS++
Sbjct: 3 SKQELDAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQL 62
Query: 69 QAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 108
Q+ALA WTG+ TVPNVFIGGK IGGCDTVVEKHQ +L+P
Sbjct: 63 QSALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLP 102
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 94.7 bits (234), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 1/92 (1%)
Query: 18 NKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWT 76
+ K+ V+ NPVVV+SKT+C Y + VK L K+L VVELD + + G +IQ L T
Sbjct: 9 DAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLT 68
Query: 77 GQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 108
GQ TVPNVFIGGKHIGGC V+ ++ G+L P
Sbjct: 69 GQHTVPNVFIGGKHIGGCTDTVKLYRKGELEP 100
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 94.4 bits (233), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 9 SKEELEIA-LNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSK 67
S E L A +N+ +E +S N VV+FSKT C YCT K+L + ++KVVELD+ G++
Sbjct: 30 SLENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQ 89
Query: 68 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 108
Q AL + TG+RTVP +F+ G IGG H+ GKL+P
Sbjct: 90 FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 130
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 94.0 bits (232), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 61/94 (64%)
Query: 15 IALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAE 74
+ +N+ +E +S N VV+FSKT C YCT K+L + ++KVVELD+ G++ Q AL +
Sbjct: 23 MPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYK 82
Query: 75 WTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 108
TG+RTVP +F+ G IGG H+ GKL+P
Sbjct: 83 MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 116
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query: 11 EELEIA-LNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQ 69
E L A +N+ +E +S N VV+FSKT C YCT K+L + ++KVVELD+ G++ Q
Sbjct: 10 ENLATAPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQ 69
Query: 70 AALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 108
AL + TG+RTVP +F+ G IGG H+ GKL+P
Sbjct: 70 DALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLP 108
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 88.6 bits (218), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 55/84 (65%)
Query: 23 IVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVP 82
++ + VV+FSK+YC + T VKEL LG V+ELD DG+++Q L+E T Q+TVP
Sbjct: 13 LIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVP 72
Query: 83 NVFIGGKHIGGCDTVVEKHQGGKL 106
N+F+ H+GGCD + +Q G L
Sbjct: 73 NIFVNKVHVGGCDQTFQAYQSGLL 96
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 21 KEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELD-IESDGSKIQAALAEWTGQR 79
++ V+ N VV++SKT+C YCT VK L K+LG VVELD + G ++Q L TGQ
Sbjct: 13 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQH 72
Query: 80 TVPNVFIGGKHIGGCDTVVEKHQGGKL 106
TVPNVF+ GKHIGGC V+ ++ G L
Sbjct: 73 TVPNVFVCGKHIGGCTDTVKLNRKGDL 99
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 53/81 (65%), Gaps = 4/81 (4%)
Query: 21 KEIVSSNPVVVFSKTYCGYC----TTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWT 76
K++++ N + V SKTYC YC T+ E LK + V++L+ +G+ IQAAL E
Sbjct: 19 KDLIAENEIFVASKTYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN 78
Query: 77 GQRTVPNVFIGGKHIGGCDTV 97
GQRTVPN++I GKHIGG D +
Sbjct: 79 GQRTVPNIYINGKHIGGNDDL 99
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 21 KEIVSSNPVVVFSKTYCGYC-TTVKELLKQLG---TSFKVVELDIESDGSKIQAALAEWT 76
K+++ V V +KTYC YC T+ L ++L + V+ELD S+GS+IQ AL E +
Sbjct: 11 KDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEIS 70
Query: 77 GQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106
GQ+TVPNV+I GKHIGG + + GKL
Sbjct: 71 GQKTVPNVYINGKHIGGNSDLETLKKNGKL 100
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/90 (45%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query: 21 KEIVSSNPVVVFSKTYCGYC-TTVKELLKQLG---TSFKVVELDIESDGSKIQAALAEWT 76
K+++ V V +KTYC YC T+ L ++L + V+ELD S+GS+IQ AL E +
Sbjct: 31 KDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEIS 90
Query: 77 GQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106
GQ+TVPNV+I GKHIGG + + GKL
Sbjct: 91 GQKTVPNVYINGKHIGGNSDLETLKKNGKL 120
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 21 KEIVSSNPVVVFSKTYCGYC----TTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWT 76
K++++ N + V SKTYC Y T+ E LK + V++L+ +G+ IQAAL E
Sbjct: 11 KDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN 70
Query: 77 GQRTVPNVFIGGKHIGGCDTV 97
GQRTVPN++I GKHIGG D +
Sbjct: 71 GQRTVPNIYINGKHIGGNDDL 91
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 72.0 bits (175), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 21 KEIVSSNPVVVFSKTYCGYC----TTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWT 76
K++++ N + V SKTYC Y T+ E LK + V++L+ +G+ IQAAL E
Sbjct: 255 KDLIAENEIFVASKTYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEIN 314
Query: 77 GQRTVPNVFIGGKHIGGCDTV 97
GQRTVPN++I GKHIGG D +
Sbjct: 315 GQRTVPNIYINGKHIGGNDDL 335
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/90 (44%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 21 KEIVSSNPVVVFSKTYCGYC-TTVKELLKQLG---TSFKVVELDIESDGSKIQAALAEWT 76
K+++ V V +KTYC Y T+ L ++L + V+ELD S+GS+IQ AL E +
Sbjct: 14 KDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEIS 73
Query: 77 GQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106
GQ+TVPNV+I GKHIGG + + GKL
Sbjct: 74 GQKTVPNVYINGKHIGGNSDLETLKKNGKL 103
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 21 KEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRT 80
++ V S V++FSKT C YC VK++L + +ELD S+GS IQ LA ++ T
Sbjct: 12 RKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIET 71
Query: 81 VPNVFIGGKHIGGCDTVVEKHQGGKL 106
VP +F+ GK IG TV++ + +L
Sbjct: 72 VPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 21 KEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRT 80
++ V S V++FSKT C YC VK++L + +ELD S+GS IQ LA ++ T
Sbjct: 12 RKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIET 71
Query: 81 VPNVFIGGKHIGGCDTVVEKHQGGKL 106
VP +F+ GK IG TV++ + +L
Sbjct: 72 VPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%)
Query: 21 KEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRT 80
++ V S V++FSKT C YC VK++L + +ELD S+GS IQ LA ++ T
Sbjct: 12 RKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIET 71
Query: 81 VPNVFIGGKHIGGCDTVVEKHQGGKL 106
VP +F+ GK IG TV++ + +L
Sbjct: 72 VPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNVF 85
VVVF K C +C +ELL QL + V++ SD ++IQ L + TG RTVP VF
Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF 73
Query: 86 IGGKHIGGCDTVVEKHQGGKLV 107
IG + IGGC + H+ G+L+
Sbjct: 74 IGKECIGGCTDLESMHKRGELL 95
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNVF 85
VVVF K C YC +E+L QL + V++ + ++IQ L + TG RTVP VF
Sbjct: 15 VVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQLTGARTVPRVF 74
Query: 86 IGGKHIGGCDTVVEKHQGGKLV 107
IG IGGC +V Q G+L+
Sbjct: 75 IGKDCIGGCSDLVSLQQSGELL 96
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)
Query: 23 IVSSNPVVVFSKTYCGYCTTVKELLK---QLGTSFKVVELDIESDGSKIQAALAEWTGQR 79
I+ +P+++FSK+ C Y KELL+ Q ++ ++ELD G ++Q + TG+
Sbjct: 10 ILDLSPIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRG 69
Query: 80 TVPNVFIGGKHIGGCDTVVEKHQGGKLV 107
TVPN+ + G GG + + + H GKL+
Sbjct: 70 TVPNLLVNGVSRGGNEEIKKLHTQGKLL 97
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGG 88
V+++++ C YC K LL + G F ++ S +++A + E +G+ T P +FIG
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAEFNEID---ASATPELRAEMQERSGRNTFPQIFIGS 64
Query: 89 KHIGGCDTVVEKHQGGKL 106
H+GGCD + GKL
Sbjct: 65 VHVGGCDDLYALEDEGKL 82
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 20 AKEIVSSN----PVVVFSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAAL 72
A+E V+S VVVF K C Y +E+L QL + V++ + ++IQ L
Sbjct: 1 AQEFVNSKIQPGKVVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYL 60
Query: 73 AEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 107
+ TG RTVP VFIG IGG +V Q G+L+
Sbjct: 61 QQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELL 95
>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella
Henselae Str. Houston
Length = 89
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGG 88
++++++ C YC ++LL + G + DI++ S Q + G+ T P +FIG
Sbjct: 8 IILYTRPNCPYCKRARDLLDKKGVKYT----DIDASTSLRQEMVQRANGRNTFPQIFIGD 63
Query: 89 KHIGGCDTVVEKHQGGKL 106
H+GGCD + GKL
Sbjct: 64 YHVGGCDDLYALENKGKL 81
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 8/91 (8%)
Query: 21 KEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEW 75
+++V+S VV+F K CG+ TV ++LK L F+ V + + ++ L E+
Sbjct: 12 EKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNI---LENEMLRQGLKEY 68
Query: 76 TGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106
+ T P ++IGG+ GGCD +E + G+L
Sbjct: 69 SNWPTFPQLYIGGEFFGGCDITLEAFKTGEL 99
>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14
Length = 109
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 22 EIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWT 76
++V+S+ VV+F K CG+ TV ++LK L F+ V + + ++ L E++
Sbjct: 13 KVVTSHKVVLFMKGTKDFPQCGFSQTVVQILKSLNAPFESVNI---LENELLRQGLKEYS 69
Query: 77 GQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106
T P ++I G+ GGCD VE ++ G+L
Sbjct: 70 SWPTFPQLYIDGEFFGGCDITVEAYKSGEL 99
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGG 88
V +++K C YC K LL G SF+ EL I+ + +K + + + +G+ TVP +FI
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGVSFQ--ELPIDGNAAK-REEMIKRSGRTTVPQIFIDA 59
Query: 89 KHIGGCDTVVEKHQGGKLVP 108
+HIGG D + G L P
Sbjct: 60 QHIGGYDDLYALDARGGLDP 79
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGG 88
+ +F+K C +C K+LL G SF+ + L ++ ++A +G+ TVP VFIGG
Sbjct: 172 ISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHDATIVSVRAV----SGRTTVPQVFIGG 227
Query: 89 KHIGGCDTV 97
KHIGG D +
Sbjct: 228 KHIGGSDDL 236
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 26 SNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVF 85
S + +++ + C +C LLK+ G F+ E I+ D +A A G+R++P +F
Sbjct: 15 SAKIEIYTWSTCPFCMRALALLKRKGVEFQ--EYCIDGDNEAREAMAARANGKRSLPQIF 72
Query: 86 IGGKHIGGCDTVVEKHQGGKLVP 108
I +HIGGCD + GKL P
Sbjct: 73 IDDQHIGGCDDIYALDGAGKLDP 95
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 13 LEIALNKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSK 67
+ + K + ++ NP++++ K CG+ + L G F V++ D
Sbjct: 1 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPD--- 57
Query: 68 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106
I+A L ++ T P +++ G+ +GGCD V+E +Q G+L
Sbjct: 58 IRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGEL 96
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 13 LEIALNKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSK 67
+ + K + ++ NP++++ K CG+ + L G F V++ D
Sbjct: 21 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPD--- 77
Query: 68 IQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106
I+A L ++ T P +++ G+ +GGCD V+E +Q G+L
Sbjct: 78 IRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGEL 116
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGG 88
V +++K C Y K LL G SF+ EL I+ + +K + + + +G+ TVP +FI
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGVSFQ--ELPIDGNAAK-REEMIKRSGRTTVPQIFIDA 59
Query: 89 KHIGGCDTVVEKHQGGKLVP 108
+HIGG D + G L P
Sbjct: 60 QHIGGYDDLYALDARGGLDP 79
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 15/94 (15%)
Query: 23 IVSSNPVVVFSK-----TYCGYCTTVKELLKQLG----TSFKVVELDIESDGSKIQAALA 73
+V + VVVF K CG+ V ++L+ G ++ V+ D +++ +
Sbjct: 16 LVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVL------DDPELRQGIK 69
Query: 74 EWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 107
+++ T+P V++ G+ +GGCD +++ HQ G LV
Sbjct: 70 DYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLV 103
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 10 KEELEIALNKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESD 64
+E L++ NKA V++F K CG+ + E+L G ++ DI D
Sbjct: 7 EERLKVLTNKAS-------VMLFMKGNKQEAKCGFSKQILEILNSTGVEYET--FDILED 57
Query: 65 GSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 108
+++ L ++ T P +++ G+ +GG D V E + G+L+P
Sbjct: 58 -EEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLP 100
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 14 EIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQA 70
++A ++ +++N V +F K C +C ++L + ++++V++ ++++
Sbjct: 6 QMAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRD 65
Query: 71 ALAEWTGQRTVPNVFIGGKHIGGCDTVVE 99
+ TG +TVP +F G IGG ++E
Sbjct: 66 YFEQITGGKTVPRIFFGKTSIGGYSDLLE 94
>pdb|1EGO|A Chain A, Nmr Structure Of Oxidized Escherichia Coli Glutaredoxin:
Comparison With Reduced E. Coli Glutaredoxin And
Functionally Related Proteins
pdb|1EGR|A Chain A, Sequence-Specific 1h N.M.R. Assignments And
Determination Of The Three-Dimensional Structure Of
Reduced Escherichia Coli Glutaredoxin
Length = 85
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 30 VVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQ--RTVPNV 84
V+F ++ C YC K+L ++L F+ +DI ++G + L + G+ TVP +
Sbjct: 4 VIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGI-TKEDLQQKAGKPVETVPQI 62
Query: 85 FIGGKHIGG 93
F+ +HIGG
Sbjct: 63 FVDQQHIGG 71
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 38.5 bits (88), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 37 CGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 96
CG+ + E+L G ++ DI D +++ L ++ T P +++ G +GG D
Sbjct: 30 CGFSKQILEILNSTGVEYET--FDILED-EEVRQGLKTFSNWPTYPQLYVRGDLVGGLDI 86
Query: 97 VVEKHQGGKLVP 108
V E G+L+P
Sbjct: 87 VKELKDNGELLP 98
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 10 KEELEIALNKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESD 64
KE+L + L K++ + P ++F K CG+ + E+L + F DI SD
Sbjct: 2 KEDLNLRL---KKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFS--SFDIFSD 56
Query: 65 GSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVE 99
+++ L ++ T P +++ G+ IGG D + E
Sbjct: 57 -EEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKE 90
>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast
Monothiol Glutaredoxin Grx5
Length = 121
Score = 37.7 bits (86), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 21 KEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTS-FKVVELDIESDGSKIQAALAE 74
++ + S PVV+F K CG+ LL G K ++ D +++ + E
Sbjct: 10 EDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLED-PELREGIKE 68
Query: 75 WTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 107
++ T+P +++ + IGGCD + + G+L
Sbjct: 69 FSEWPTIPQLYVNKEFIGGCDVITSMARSGELA 101
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 14 EIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQA 70
++A ++ +++N V +F K +C ++L + ++++V++ ++++
Sbjct: 6 QMAEEFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRD 65
Query: 71 ALAEWTGQRTVPNVFIGGKHIGGCDTVVE 99
+ TG +TVP +F G IGG ++E
Sbjct: 66 YFEQITGGKTVPRIFFGKTSIGGYSDLLE 94
>pdb|1QFN|A Chain A, Glutaredoxin-1-Ribonucleotide Reductase B1 Mixed
Disulfide Bond
pdb|1GRX|A Chain A, Structure Of E. Coli Glutaredoxin
Length = 85
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 30 VVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQ--RTVPNV 84
V+F ++ C Y K+L ++L F+ +DI ++G + L + G+ TVP +
Sbjct: 4 VIFGRSGCPYSVRAKDLAEKLSNERDDFQYQYVDIRAEGI-TKEDLQQKAGKPVETVPQI 62
Query: 85 FIGGKHIGG 93
F+ +HIGG
Sbjct: 63 FVDQQHIGG 71
>pdb|3LGC|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis
pdb|3MSZ|A Chain A, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
pdb|3MSZ|B Chain B, Crystal Structure Of Glutaredoxin 1 From Francisella
Tularensis Complexed With Cacodylate
Length = 89
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQ-----RTVPN 83
V ++++ C YC K+ ++ +F +D + SK + +G+ TVP
Sbjct: 6 VKIYTRNGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEXNQ-SGKVIFPISTVPQ 64
Query: 84 VFIGGKHIGG 93
+FI +HIGG
Sbjct: 65 IFIDDEHIGG 74
>pdb|2I1U|A Chain A, Mycobacterium Tuberculosis Thioredoxin C
Length = 121
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 20 AKEIVSSN-PVVV-FSKTYCGYCTTVKELLKQL----GTSFKVVELDIESD 64
A +++SSN PV+V F T+CG C V +L+++ T V +LD++++
Sbjct: 23 ATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTN 73
>pdb|2L4Q|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
pdb|2L59|A Chain A, Solution Structures Of Oxidized And Reduced Thioredoxin
C From M. Tb
Length = 116
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
Query: 20 AKEIVSSN-PVVV-FSKTYCGYCTTVKELLKQL----GTSFKVVELDIESD 64
A +++SSN PV+V F T+CG C V +L+++ T V +LD++++
Sbjct: 18 ATDVLSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTN 68
>pdb|2G2Q|A Chain A, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
pdb|2G2Q|B Chain B, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
pdb|2G2Q|C Chain C, The Crystal Structure Of G4, The Poxviral Disulfide
Oxidoreductase Essential For Cytoplasmic Disulfide Bond
Formation
Length = 124
Score = 32.0 bits (71), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 27 NPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIES 63
N +++F K YC C V + +++L + + ++ +DI S
Sbjct: 3 NVLIIFGKPYCSICENVSDAVEELKSEYDILHVDILS 39
>pdb|2LQO|A Chain A, Mrx1 Reduced
pdb|2LQQ|A Chain A, Oxidized Mrx1
Length = 92
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV 84
+ +++ ++CGYC +K L ++ E+DIE + + + + G RTVP V
Sbjct: 6 LTIYTTSWCGYCLRLKTALTANRIAYD--EVDIEHNRAAAEFVGSVNGGNRTVPTV 59
>pdb|1TRS|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRU|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRV|A Chain A, The High-resolution Three-dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
pdb|1TRW|A Chain A, The High-Resolution Three-Dimensional Solution
Structures Of The Oxidized And Reduced States Of Human
Thioredoxin
Length = 105
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSKIQAALAEWTGQRTVPNVFIG 87
VV FS T+CG C +K L + V+ L+++ D ++ A+ AE T F
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVASEAEVKATPTF-QFFKK 82
Query: 88 GKHIG 92
G+ +G
Sbjct: 83 GQKVG 87
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 9 SKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSK 67
SK + AL+ A + + VV FS T+CG C +K L + V+ L+++ D ++
Sbjct: 7 SKTAFQEALDAAGDKLV---VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQ 63
Query: 68 IQAALAEWTGQRTVPNVFI 86
+A G R +P + +
Sbjct: 64 ---DVAPKYGIRGIPTLLL 79
>pdb|2XBI|A Chain A, Crystal Structure Of Schistosoma Mansoni Thioredoxin At
1.6 Angstrom
Length = 108
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESD 64
VV F T+CG C T+ L K+L + + + ++ D
Sbjct: 28 VVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVD 63
>pdb|2XBQ|A Chain A, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XBQ|B Chain B, Crystal Structure Of Reduced Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.7 Angstrom
pdb|2XC2|A Chain A, Crystal Structure Of Oxidized Schistosoma Mansoni
Thioredoxin Pre-Protein At 1.6 Angstrom
Length = 117
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESD 64
VV F T+CG C T+ L K+L + + + ++ D
Sbjct: 37 VVDFFATWCGPCKTIAPLFKELSEKYDAIFVKVDVD 72
>pdb|3M9J|A Chain A, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9J|B Chain B, Crystal Structure Of Human Thioredoxin C6973S DOUBLE
MUTANT, REDUCED Form
pdb|3M9K|A Chain A, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
pdb|3M9K|B Chain B, Crystal Structure Of Human Thioredoxin C6973S
DOUBLE-Mutant, Oxidized Form
Length = 105
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSKIQAALAEWTGQRTVPNVFIG 87
VV FS T+CG C +K L + V+ L+++ D + A+ +E T F
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKSMPTF-QFFKK 82
Query: 88 GKHIG 92
G+ +G
Sbjct: 83 GQKVG 87
>pdb|1EP7|A Chain A, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1EP7|B Chain B, Crystal Structure Of Wt Thioredoxin H From Chlamydomonas
Reinhardtii
pdb|1TOF|A Chain A, Thioredoxin H (Oxidized Form), Nmr, 23 Structures
Length = 112
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 9 SKEELEIALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGTSF 54
SK + L K KE P+VV F+ T+CG C + L + L +
Sbjct: 9 SKAAWDAQLAKGKE--EHKPIVVDFTATWCGPCKMIAPLFETLSNDY 53
>pdb|1EP8|A Chain A, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
pdb|1EP8|B Chain B, Crystal Structure Of A Mutated Thioredoxin, D30a, From
Chlamydomonas Reinhardtii
Length = 112
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 9 SKEELEIALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGTSF 54
SK + L K KE P+VV F+ T+CG C + L + L +
Sbjct: 9 SKAAWDAQLAKGKE--EHKPIVVAFTATWCGPCKMIAPLFETLSNDY 53
>pdb|1HF2|A Chain A, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|B Chain B, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|C Chain C, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
pdb|1HF2|D Chain D, Crystal Structure Of The Bacterial Cell-Division Inhibitor
Minc From T. Maritima
Length = 210
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 17 LNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWT 76
+NK EI++ VVVF K + E G V LD+++ +I +
Sbjct: 126 VNKGAEILAGGSVVVFGKAQGNIRAGLNE-----GGQAVVAALDLQTSLIQIAGFITHSK 180
Query: 77 GQRTVPNVFIGGKHIGGCDTVVE 99
G+ VP++ H+ G V+E
Sbjct: 181 GEENVPSI----AHVKGNRIVIE 199
>pdb|2HSH|A Chain A, Crystal Structure Of C73s Mutant Of Human Thioredoxin-1
Oxidized With H2o2
pdb|1ERV|A Chain A, Human Thioredoxin Mutant With Cys 73 Replaced By Ser
(Reduced Form)
Length = 105
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSKIQAALAEWTGQRTVPNVFIG 87
VV FS T+CG C +K L + V+ L+++ D + A+ E T F
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTF-QFFKK 82
Query: 88 GKHIG 92
G+ +G
Sbjct: 83 GQKVG 87
>pdb|3TXS|A Chain A, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXS|B Chain B, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXS|C Chain C, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXS|D Chain D, Crystal Structure Of Phage 44rr Small Terminase Gp16
Length = 94
Score = 28.5 bits (62), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 4 FQSKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLK 48
+QS++ + +IAL AK S V VF++ TT KE+LK
Sbjct: 35 YQSQMLLDMAKIALENAKNADSPRHVEVFAQLMGQMTTTNKEMLK 79
>pdb|1A8L|A Chain A, Protein Disulfide Oxidoreductase From Archaeon
Pyrococcus Furiosus
Length = 226
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 8/42 (19%)
Query: 27 NPV--VVF-SKTYCGYCTTVKELLKQLGT-----SFKVVELD 60
NPV +VF K +C YC +K+L+++L S+++V+ D
Sbjct: 22 NPVKLIVFVRKDHCQYCDQLKQLVQELSELTDKLSYEIVDFD 63
>pdb|3SUK|A Chain A, Crystal Structure Of Cerato-Platanin 2 From M. Perniciosa
(Mpcp2)
pdb|3SUK|B Chain B, Crystal Structure Of Cerato-Platanin 2 From M. Perniciosa
(Mpcp2)
Length = 125
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 22 EIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKI-QAALAEWTGQRT 80
I +S+ + F+ CG C T+ + + S +V +D +G + QAA+ E T
Sbjct: 46 HIGASSDIGGFNSPACGNCYTISFTFQGVTRSINLVAIDHAGNGFNVAQAAMDELTNGNA 105
Query: 81 V 81
V
Sbjct: 106 V 106
>pdb|3TXQ|A Chain A, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|B Chain B, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|C Chain C, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|D Chain D, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|E Chain E, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|F Chain F, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|G Chain G, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|H Chain H, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|I Chain I, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|J Chain J, Crystal Structure Of Phage 44rr Small Terminase Gp16
pdb|3TXQ|K Chain K, Crystal Structure Of Phage 44rr Small Terminase Gp16
Length = 87
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 4 FQSKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLK 48
+QS++ + +IAL AK S V VF++ TT KE+LK
Sbjct: 34 YQSQMLLDMAKIALENAKNADSPRHVEVFAQLMGQMTTTNKEMLK 78
>pdb|2IFQ|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|1AUC|A Chain A, Human Thioredoxin (Oxidized With Diamide)
pdb|1ERT|A Chain A, Human Thioredoxin (Reduced Form)
pdb|1ERU|A Chain A, Human Thioredoxin (Oxidized Form)
Length = 105
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSKIQAALAEWTGQRTVPNVFIG 87
VV FS T+CG C +K L + V+ L+++ D + A+ E T F
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTF-QFFKK 82
Query: 88 GKHIG 92
G+ +G
Sbjct: 83 GQKVG 87
>pdb|1J08|A Chain A, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|B Chain B, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|C Chain C, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|D Chain D, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|E Chain E, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|F Chain F, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|G Chain G, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
pdb|1J08|H Chain H, Crystal Structure Of Glutaredoxin-Like Protein From
Pyrococcus Horikoshii
Length = 226
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 27 NPV---VVFSKTYCGYCTTVKELLKQLGT-----SFKVVELD 60
NPV V K +C YC +K+L+++L S+++V+ D
Sbjct: 22 NPVKLIVFIGKEHCQYCDQLKQLVQELSELTDKLSYEIVDFD 63
>pdb|1XYG|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|1XYG|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g19940
pdb|2Q49|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
pdb|2Q49|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g19940
Length = 359
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 32 FSKTYCGYCT----TVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQ 78
FS +C T +E++K+L T+ K+V+L + I A EW GQ
Sbjct: 80 FSTVDAVFCCLPHGTTQEIIKELPTALKIVDLSADFRLRNI-AEYEEWYGQ 129
>pdb|2IFQ|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IFQ|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSKIQAALAEWTGQRTVPNVFIG 87
VV FS T+CG C +K L + V+ L+++ D + A+ E T F
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASEXEVKCMPTF-QFFKK 82
Query: 88 GKHIG 92
G+ +G
Sbjct: 83 GQKVG 87
>pdb|3TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
pdb|4TRX|A Chain A, High-Resolution Three-Dimensional Structure Of Reduced
Recombinant Human Thioredoxin In Solution
Length = 105
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSKIQAALAEWTGQRTVPNVFIG 87
VV FS T+CG C +K L + V+ L+++ D + A+ E T F
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCTPTF-QFFKK 82
Query: 88 GKHIG 92
G+ +G
Sbjct: 83 GQKVG 87
>pdb|2F51|A Chain A, Structure Of Trichomonas Vaginalis Thioredoxin
pdb|2F51|B Chain B, Structure Of Trichomonas Vaginalis Thioredoxin
Length = 118
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 14 EIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFK---VVELDIESDGSKIQA 70
E LN+ KE +V F T+CG C + ++L + + K +++D++ +G+
Sbjct: 13 EALLNRIKE-APGLVLVDFFATWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGNA--- 68
Query: 71 ALAEWTGQRTVPNVFI 86
A+ G ++P +F
Sbjct: 69 --ADAYGVSSIPALFF 82
>pdb|2O85|A Chain A, S. Aureus Thioredoxin P31t Mutant
Length = 107
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFK----VVELDIESDGS 66
+V F T+CG C + +L++L ++ +++LD++ + S
Sbjct: 24 LVDFWATWCGTCKMIAPVLEELAADYEGKADILKLDVDENPS 65
>pdb|2O7K|A Chain A, S. Aureus Thioredoxin
Length = 107
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFK----VVELDIESDGS 66
+V F T+CG C + +L++L ++ +++LD++ + S
Sbjct: 24 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPS 65
>pdb|2O87|A Chain A, S. Aureus Thioredoxin P31s Mutant
Length = 106
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFK----VVELDIESDGS 66
+V F T+CG C + +L++L ++ +++LD++ + S
Sbjct: 23 LVDFWATWCGSCKMIAPVLEELAADYEGKADILKLDVDENPS 64
>pdb|4GZR|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
H37rv Esxop (Rv2346c-Rv2347c) Complex In Space Group
C2221
pdb|4GZR|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
H37rv Esxop (Rv2346c-Rv2347c) Complex In Space Group
C2221
Length = 101
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 44 KELLKQLGTSFKVVELDIESDGSKIQAA 71
+E + QLG +F+V+ + G K+QAA
Sbjct: 51 QEFITQLGRNFQVIYEQANAHGQKVQAA 78
>pdb|3OGI|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
H37rv Esxop Complex (Rv2346c-Rv2347c)
pdb|3OGI|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
H37rv Esxop Complex (Rv2346c-Rv2347c)
Length = 101
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 44 KELLKQLGTSFKVVELDIESDGSKIQAA 71
+E + QLG +F+V+ + G K+QAA
Sbjct: 51 QEFITQLGRNFQVIYEQANAHGQKVQAA 78
>pdb|4DVC|A Chain A, Structural And Functional Studies Of Tcpg, The Vibrio
Cholerae Dsba Disulfide-Forming Protein Required For
Pilus And Cholera Toxin Production
Length = 184
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 21 KEIVSSNPVVV-FSKTYCGYCTTVKELLKQL 50
K SS+PVV F YC +C T + ++ QL
Sbjct: 16 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQL 46
>pdb|2IJY|A Chain A, Nmr Structure Ensemble For The Reduced Dsba Disulphide
Oxidoreductase From Vibrio Cholerae
Length = 181
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 21 KEIVSSNPVVV-FSKTYCGYCTTVKELLKQL 50
K SS+PVV F YC +C T + ++ QL
Sbjct: 13 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQL 43
>pdb|1BED|A Chain A, Structure Of Disulfide Oxidoreductase
Length = 181
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 21 KEIVSSNPVVV-FSKTYCGYCTTVKELLKQL 50
K SS+PVV F YC +C T + ++ QL
Sbjct: 13 KTPASSSPVVSEFFSFYCPHCNTFEPIIAQL 43
>pdb|1AIU|A Chain A, Human Thioredoxin (D60n Mutant, Reduced Form)
Length = 105
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSKIQAALAEWTGQRTVPNVFIG 87
VV FS T+CG C +K L + V+ L+++ + + A+ E T F
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVNDCQDVASECEVKCMPTF-QFFKK 82
Query: 88 GKHIG 92
G+ +G
Sbjct: 83 GQKVG 87
>pdb|2OI2|A Chain A, Streptococcus Pneumoniae Mevalonate Kinase In Complex With
Diphosphomevalonate
Length = 292
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 4 FQSKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIES 63
+Q+ + + LEI +N+A+ I NP + +KT C ++ +K +G F +E+D+ +
Sbjct: 107 YQADLPHDVLEILVNRAEMIAHMNPSGLDAKT-CLSDQPIR-FIKNVG--FTELEMDLSA 162
>pdb|3CXG|A Chain A, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
pdb|3CXG|B Chain B, Crystal Structure Of Plasmodium Falciparum Thioredoxin,
Pfi0790w
Length = 133
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 25 SSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVP 82
+S+ V+ F +C C +KE K + V +DI+ D I L + + +P
Sbjct: 40 NSSIVIKFGAVWCKPCNKIKEYFKNQLNYYYVTLVDIDVD---IHPKLNDQHNIKALP 94
>pdb|1X5C|A Chain A, The Solution Structure Of The Second Thioredoxin-Like
Domain Of Human Protein Disulfide-Isomerase
Length = 121
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 27 NPVVVFSKTYCGYCTTVKELLKQLGTSFK----VVELDIESDGSKIQA 70
N V F +CG+C + + +LG ++K +V ++S ++++A
Sbjct: 27 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEA 74
>pdb|3TLJ|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TLJ|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosyl-L-Homocysteine
pdb|3TM4|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM4|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With S- Adenosylmethionine
pdb|3TM5|A Chain A, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
pdb|3TM5|B Chain B, Crystal Structure Of Trm14 From Pyrococcus Furiosus In
Complex With Sinefungin
Length = 373
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 8 ISKEELEIALNKAKEIVSSNPVVVFSK 34
I K+E E AL + K+ VSS PV F K
Sbjct: 90 IEKDESEEALKRIKDFVSSLPVEQFVK 116
>pdb|2HXK|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|B Chain B, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2HXK|C Chain C, Crystal Structure Of S-Nitroso Thioredoxin
pdb|2IIY|A Chain A, Crystal Structure Of S-Nitroso Thioredoxin
Length = 105
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVV 57
VV FS T+CG C +K L + V
Sbjct: 24 VVDFSATWCGPCKMIKPFFHSLSEKYSNV 52
>pdb|3UEM|A Chain A, Crystal Structure Of Human Pdi Bb'a' Domains
Length = 361
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 27 NPVVVFSKTYCGYCTTVKELLKQLGTSFK----VVELDIESDGSKIQA 70
N V F +CG+C + + +LG ++K +V ++S ++++A
Sbjct: 269 NVFVEFYAPWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANEVEA 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,178,623
Number of Sequences: 62578
Number of extensions: 113350
Number of successful extensions: 342
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 92
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)