Query 033336
Match_columns 121
No_of_seqs 106 out of 1139
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 12:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 99.9 4.7E-22 1E-26 119.1 11.7 95 22-116 3-97 (99)
2 PHA03050 glutaredoxin; Provisi 99.9 1.5E-21 3.2E-26 118.5 12.8 100 17-116 3-105 (108)
3 KOG1752 Glutaredoxin and relat 99.9 2E-20 4.3E-25 112.2 12.4 100 17-116 4-103 (104)
4 PRK10824 glutaredoxin-4; Provi 99.8 4.1E-20 8.8E-25 112.8 11.8 99 15-116 3-106 (115)
5 TIGR02180 GRX_euk Glutaredoxin 99.8 2E-19 4.3E-24 104.3 9.8 82 29-110 1-84 (84)
6 TIGR00365 monothiol glutaredox 99.8 2.4E-18 5.2E-23 102.7 11.2 90 18-110 3-97 (97)
7 cd03419 GRX_GRXh_1_2_like Glut 99.8 5.5E-18 1.2E-22 97.9 10.1 81 28-108 1-81 (82)
8 KOG0910 Thioredoxin-like prote 99.8 1.3E-18 2.9E-23 109.4 5.6 81 25-113 60-147 (150)
9 cd03028 GRX_PICOT_like Glutare 99.7 5.9E-17 1.3E-21 95.5 10.3 83 22-107 3-90 (90)
10 PHA02278 thioredoxin-like prot 99.7 2.7E-18 6E-23 103.4 4.0 79 25-107 13-98 (103)
11 TIGR02181 GRX_bact Glutaredoxi 99.7 6.5E-17 1.4E-21 92.9 9.6 79 29-110 1-79 (79)
12 cd02954 DIM1 Dim1 family; Dim1 99.7 9.8E-18 2.1E-22 102.2 5.7 72 26-105 14-92 (114)
13 PRK10638 glutaredoxin 3; Provi 99.7 3.4E-16 7.3E-21 90.9 10.4 81 28-111 3-83 (83)
14 PTZ00062 glutaredoxin; Provisi 99.7 1.2E-15 2.6E-20 101.8 12.7 96 15-113 101-201 (204)
15 TIGR02190 GlrX-dom Glutaredoxi 99.7 1.3E-15 2.8E-20 87.7 9.4 73 25-101 6-78 (79)
16 cd03418 GRX_GRXb_1_3_like Glut 99.7 3.5E-15 7.6E-20 84.7 10.0 73 28-103 1-74 (75)
17 COG3118 Thioredoxin domain-con 99.7 2E-16 4.4E-21 109.1 5.7 92 17-116 34-132 (304)
18 cd02999 PDI_a_ERp44_like PDIa 99.7 1.1E-16 2.4E-21 96.0 3.9 75 24-107 16-97 (100)
19 COG0695 GrxC Glutaredoxin and 99.6 4.5E-15 9.7E-20 85.5 9.2 78 28-106 2-79 (80)
20 cd02985 TRX_CDSP32 TRX family, 99.6 5.5E-16 1.2E-20 93.4 5.6 65 26-92 15-85 (103)
21 cd02975 PfPDO_like_N Pyrococcu 99.6 8E-16 1.7E-20 94.2 6.1 99 9-113 4-109 (113)
22 KOG0907 Thioredoxin [Posttrans 99.6 5.4E-16 1.2E-20 93.7 5.1 79 26-113 21-105 (106)
23 cd02956 ybbN ybbN protein fami 99.6 3.3E-16 7.2E-21 92.9 4.0 77 26-110 12-95 (96)
24 cd03027 GRX_DEP Glutaredoxin ( 99.6 9.2E-15 2E-19 82.8 9.5 70 28-100 2-71 (73)
25 cd02963 TRX_DnaJ TRX domain, D 99.6 5.6E-16 1.2E-20 94.6 4.8 80 25-112 23-110 (111)
26 cd03029 GRX_hybridPRX5 Glutare 99.6 1.2E-14 2.7E-19 82.0 9.1 70 28-101 2-71 (72)
27 PLN00410 U5 snRNP protein, DIM 99.6 1.2E-15 2.7E-20 96.3 5.1 81 25-113 22-119 (142)
28 cd02948 TRX_NDPK TRX domain, T 99.6 1.2E-15 2.6E-20 91.7 4.8 78 25-112 16-101 (102)
29 cd03031 GRX_GRX_like Glutaredo 99.6 2.7E-14 5.9E-19 90.8 11.0 83 28-113 1-93 (147)
30 cd03006 PDI_a_EFP1_N PDIa fami 99.6 5.7E-16 1.2E-20 94.8 2.5 61 25-90 28-96 (113)
31 cd02953 DsbDgamma DsbD gamma f 99.6 3.2E-15 7E-20 90.0 5.7 83 25-111 10-104 (104)
32 cd02950 TxlA TRX-like protein 99.6 1.1E-15 2.4E-20 97.1 3.7 98 10-113 3-109 (142)
33 PRK10996 thioredoxin 2; Provis 99.6 3.2E-15 7E-20 94.6 5.6 81 25-113 51-138 (139)
34 cd03003 PDI_a_ERdj5_N PDIa fam 99.6 1.6E-15 3.5E-20 90.8 3.5 61 26-91 18-85 (101)
35 PRK11200 grxA glutaredoxin 1; 99.6 2.6E-14 5.6E-19 83.2 8.5 72 28-102 2-80 (85)
36 TIGR02183 GRXA Glutaredoxin, G 99.6 5.2E-14 1.1E-18 82.2 9.8 74 29-103 2-80 (86)
37 cd03000 PDI_a_TMX3 PDIa family 99.6 1.2E-15 2.5E-20 92.0 2.9 83 23-113 12-103 (104)
38 cd02986 DLP Dim1 family, Dim1- 99.6 1.5E-14 3.3E-19 87.8 7.7 62 25-91 13-81 (114)
39 cd02973 TRX_GRX_like Thioredox 99.6 1.8E-14 3.9E-19 80.1 7.5 60 28-92 2-64 (67)
40 PF00085 Thioredoxin: Thioredo 99.6 9.7E-16 2.1E-20 91.5 2.2 80 26-113 17-103 (103)
41 TIGR00411 redox_disulf_1 small 99.6 6E-15 1.3E-19 85.0 5.3 75 29-113 3-81 (82)
42 PHA02125 thioredoxin-like prot 99.6 1.1E-14 2.5E-19 82.9 6.2 56 29-92 2-57 (75)
43 cd02066 GRX_family Glutaredoxi 99.6 9.1E-14 2E-18 77.6 9.7 70 28-100 1-70 (72)
44 COG0278 Glutaredoxin-related p 99.6 1.1E-13 2.4E-18 81.1 10.2 97 15-113 3-104 (105)
45 cd02989 Phd_like_TxnDC9 Phosdu 99.6 3.3E-14 7.2E-19 87.0 8.3 63 25-92 21-89 (113)
46 PF00462 Glutaredoxin: Glutare 99.6 3E-14 6.6E-19 77.7 7.0 60 29-91 1-60 (60)
47 cd02994 PDI_a_TMX PDIa family, 99.5 4.5E-15 9.7E-20 88.8 3.9 78 24-111 15-100 (101)
48 cd03004 PDI_a_ERdj5_C PDIa fam 99.5 3.1E-15 6.7E-20 90.0 2.6 58 26-88 19-83 (104)
49 PRK09381 trxA thioredoxin; Pro 99.5 1.1E-14 2.5E-19 88.2 4.9 80 26-113 21-107 (109)
50 cd03005 PDI_a_ERp46 PDIa famil 99.5 7E-15 1.5E-19 87.8 3.1 75 26-108 16-100 (102)
51 cd02951 SoxW SoxW family; SoxW 99.5 2.4E-14 5.1E-19 88.9 5.2 86 25-113 12-118 (125)
52 TIGR01295 PedC_BrcD bacterioci 99.5 1.3E-14 2.9E-19 89.9 3.9 82 25-110 22-120 (122)
53 TIGR02196 GlrX_YruB Glutaredox 99.5 7.8E-14 1.7E-18 78.3 6.8 63 29-94 2-64 (74)
54 cd02996 PDI_a_ERp44 PDIa famil 99.5 1.6E-14 3.4E-19 87.5 4.1 59 26-89 18-89 (108)
55 cd03065 PDI_b_Calsequestrin_N 99.5 1.4E-14 3.1E-19 89.3 3.7 77 28-113 29-118 (120)
56 cd02965 HyaE HyaE family; HyaE 99.5 1.8E-14 3.8E-19 87.5 3.8 71 26-104 27-106 (111)
57 cd02957 Phd_like Phosducin (Ph 99.5 1.5E-13 3.2E-18 84.0 7.9 60 27-92 25-90 (113)
58 cd02949 TRX_NTR TRX domain, no 99.5 1.6E-14 3.4E-19 86.0 3.2 77 26-110 13-96 (97)
59 KOG0908 Thioredoxin-like prote 99.5 2.2E-14 4.8E-19 96.8 3.6 93 9-114 8-106 (288)
60 cd02987 Phd_like_Phd Phosducin 99.5 1.6E-13 3.5E-18 89.9 6.2 81 27-113 84-174 (175)
61 PRK12759 bifunctional gluaredo 99.5 4.5E-13 9.8E-18 98.0 9.2 85 28-114 3-92 (410)
62 cd02962 TMX2 TMX2 family; comp 99.5 3.7E-13 7.9E-18 86.3 7.2 62 26-92 47-122 (152)
63 PTZ00443 Thioredoxin domain-co 99.4 1.6E-13 3.5E-18 92.9 5.6 79 26-112 52-137 (224)
64 cd02984 TRX_PICOT TRX domain, 99.4 5.2E-13 1.1E-17 79.1 7.0 62 26-92 14-82 (97)
65 cd02959 ERp19 Endoplasmic reti 99.4 2.9E-13 6.2E-18 83.3 5.8 82 25-112 18-111 (117)
66 KOG4277 Uncharacterized conser 99.4 9.8E-14 2.1E-18 96.4 3.8 93 12-112 29-130 (468)
67 TIGR01068 thioredoxin thioredo 99.4 2.5E-13 5.4E-18 80.6 5.0 80 26-113 14-100 (101)
68 cd03002 PDI_a_MPD1_like PDI fa 99.4 1.1E-13 2.3E-18 83.7 2.8 61 26-89 18-85 (109)
69 TIGR00412 redox_disulf_2 small 99.4 5.3E-13 1.1E-17 76.2 5.3 53 31-91 4-60 (76)
70 cd02997 PDI_a_PDIR PDIa family 99.4 1.4E-13 3.1E-18 82.3 2.6 63 26-91 17-88 (104)
71 KOG0190 Protein disulfide isom 99.4 1.5E-13 3.2E-18 101.3 3.0 92 18-117 33-135 (493)
72 TIGR02187 GlrX_arch Glutaredox 99.4 4.4E-13 9.6E-18 90.4 5.0 74 30-112 138-214 (215)
73 PTZ00051 thioredoxin; Provisio 99.4 1.7E-12 3.6E-17 77.1 6.8 62 26-92 18-85 (98)
74 cd03026 AhpF_NTD_C TRX-GRX-lik 99.4 2.4E-12 5.2E-17 75.6 6.9 60 28-92 15-77 (89)
75 TIGR01126 pdi_dom protein disu 99.4 4.7E-13 1E-17 79.7 3.9 81 25-113 12-101 (102)
76 PRK10329 glutaredoxin-like pro 99.4 2E-12 4.4E-17 74.6 6.2 63 28-94 2-64 (81)
77 TIGR02187 GlrX_arch Glutaredox 99.4 1.3E-12 2.8E-17 88.2 6.1 87 20-113 14-110 (215)
78 cd03007 PDI_a_ERp29_N PDIa fam 99.4 1.6E-12 3.5E-17 79.6 5.8 85 26-113 18-115 (116)
79 cd03001 PDI_a_P5 PDIa family, 99.4 7.3E-13 1.6E-17 79.2 4.1 57 27-88 19-82 (103)
80 PRK15412 thiol:disulfide inter 99.3 1.1E-12 2.4E-17 86.6 4.1 86 25-113 67-175 (185)
81 cd02993 PDI_a_APS_reductase PD 99.3 1E-11 2.2E-16 75.4 8.1 56 25-84 20-82 (109)
82 cd02988 Phd_like_VIAF Phosduci 99.3 1.3E-12 2.8E-17 86.8 4.2 78 27-112 103-190 (192)
83 TIGR02200 GlrX_actino Glutared 99.3 8.2E-12 1.8E-16 70.8 7.0 62 28-92 1-64 (77)
84 cd02952 TRP14_like Human TRX-r 99.3 7E-12 1.5E-16 77.2 6.6 67 26-92 21-104 (119)
85 PF13098 Thioredoxin_2: Thiore 99.3 6.3E-13 1.4E-17 80.7 1.7 82 26-110 5-112 (112)
86 cd02976 NrdH NrdH-redoxin (Nrd 99.3 3.1E-11 6.7E-16 67.5 8.1 64 28-94 1-64 (73)
87 cd02947 TRX_family TRX family; 99.3 3.1E-12 6.8E-17 74.1 4.0 77 26-110 10-92 (93)
88 cd02998 PDI_a_ERp38 PDIa famil 99.3 1.5E-12 3.2E-17 77.9 2.5 54 26-84 18-79 (105)
89 PRK00293 dipZ thiol:disulfide 99.3 1.2E-11 2.7E-16 93.8 8.0 87 25-113 473-569 (571)
90 TIGR02194 GlrX_NrdH Glutaredox 99.3 2.7E-11 5.8E-16 68.3 7.0 62 29-94 1-63 (72)
91 cd02955 SSP411 TRX domain, SSP 99.3 3.1E-11 6.8E-16 74.9 7.8 89 25-114 14-119 (124)
92 PTZ00062 glutaredoxin; Provisi 99.3 6.1E-12 1.3E-16 84.1 4.8 53 27-92 18-76 (204)
93 TIGR00385 dsbE periplasmic pro 99.3 3.7E-12 7.9E-17 83.3 3.5 86 25-113 62-170 (173)
94 cd03008 TryX_like_RdCVF Trypar 99.3 2.9E-11 6.3E-16 77.0 7.2 67 25-91 24-126 (146)
95 cd02995 PDI_a_PDI_a'_C PDIa fa 99.3 2.9E-12 6.3E-17 76.6 2.3 57 27-89 19-84 (104)
96 cd02961 PDI_a_family Protein D 99.2 1.2E-11 2.6E-16 72.9 4.8 57 26-87 15-79 (101)
97 PTZ00102 disulphide isomerase; 99.2 9.7E-12 2.1E-16 92.3 4.6 81 26-115 49-139 (477)
98 TIGR01130 ER_PDI_fam protein d 99.2 8.2E-12 1.8E-16 92.0 4.0 81 26-114 18-109 (462)
99 cd02992 PDI_a_QSOX PDIa family 99.2 4.5E-11 9.7E-16 73.2 6.5 55 27-84 20-82 (114)
100 KOG0911 Glutaredoxin-related p 99.2 2.4E-10 5.3E-15 76.3 10.4 92 18-112 130-226 (227)
101 TIGR02738 TrbB type-F conjugat 99.2 6.6E-12 1.4E-16 80.6 2.6 83 28-112 53-151 (153)
102 PTZ00102 disulphide isomerase; 99.2 1.1E-11 2.4E-16 92.0 3.0 84 25-115 374-466 (477)
103 cd03009 TryX_like_TryX_NRX Try 99.2 3.1E-10 6.7E-15 70.8 8.4 67 25-91 17-113 (131)
104 TIGR02740 TraF-like TraF-like 99.2 7.7E-11 1.7E-15 82.1 6.2 87 25-113 165-263 (271)
105 TIGR00424 APS_reduc 5'-adenyly 99.1 1.8E-10 3.8E-15 85.2 7.2 62 25-89 370-439 (463)
106 PRK14018 trifunctional thiored 99.1 3.4E-11 7.3E-16 90.1 3.4 87 25-114 55-173 (521)
107 cd02964 TryX_like_family Trypa 99.1 5.9E-10 1.3E-14 69.7 7.7 67 25-91 16-113 (132)
108 KOG0190 Protein disulfide isom 99.1 2.7E-11 5.8E-16 89.5 1.8 83 25-115 383-474 (493)
109 cd03030 GRX_SH3BGR Glutaredoxi 99.1 2.8E-09 6E-14 62.8 10.0 80 29-111 2-91 (92)
110 cd03010 TlpA_like_DsbE TlpA-li 99.1 1.8E-10 3.9E-15 71.4 5.2 67 25-91 24-114 (127)
111 PLN02309 5'-adenylylsulfate re 99.1 3E-10 6.6E-15 83.9 7.1 61 25-89 364-433 (457)
112 KOG0912 Thiol-disulfide isomer 99.1 1.1E-10 2.3E-15 81.3 3.5 86 21-113 7-105 (375)
113 cd02982 PDI_b'_family Protein 99.0 2.4E-10 5.2E-15 68.3 3.4 79 26-112 12-101 (103)
114 PF13905 Thioredoxin_8: Thiore 99.0 2.4E-09 5.1E-14 63.1 7.5 59 27-85 2-87 (95)
115 PRK13728 conjugal transfer pro 99.0 1.2E-10 2.5E-15 76.4 1.5 83 29-113 73-170 (181)
116 PRK03147 thiol-disulfide oxido 99.0 8.2E-11 1.8E-15 76.4 0.7 86 25-113 60-171 (173)
117 PLN02919 haloacid dehalogenase 99.0 2E-10 4.4E-15 92.4 2.9 87 24-113 418-535 (1057)
118 cd03011 TlpA_like_ScsD_MtbDsbE 99.0 2.8E-10 6.2E-15 70.0 2.8 63 25-87 19-101 (123)
119 TIGR01130 ER_PDI_fam protein d 98.9 4.1E-10 8.8E-15 83.0 2.8 85 26-118 364-458 (462)
120 cd02958 UAS UAS family; UAS is 98.9 3.6E-09 7.7E-14 64.6 6.3 82 26-113 17-110 (114)
121 cd02960 AGR Anterior Gradient 98.9 2.8E-09 6E-14 66.5 5.8 73 12-92 11-94 (130)
122 PF13899 Thioredoxin_7: Thiore 98.9 1.1E-08 2.3E-13 59.0 6.3 65 13-85 6-78 (82)
123 PF13192 Thioredoxin_3: Thiore 98.9 2E-09 4.3E-14 61.3 3.0 51 33-91 6-60 (76)
124 KOG2501 Thioredoxin, nucleored 98.9 1.4E-08 3.1E-13 64.7 7.0 73 20-92 27-130 (157)
125 cd02967 mauD Methylamine utili 98.8 1.3E-08 2.8E-13 61.8 6.2 57 26-84 21-82 (114)
126 cd03060 GST_N_Omega_like GST_N 98.8 1.5E-07 3.2E-12 52.6 8.8 67 30-100 2-69 (71)
127 cd00570 GST_N_family Glutathio 98.8 1.3E-07 2.8E-12 51.7 8.5 68 30-100 2-69 (71)
128 COG4232 Thiol:disulfide interc 98.8 1.6E-08 3.4E-13 75.9 5.5 84 27-114 475-568 (569)
129 KOG0191 Thioredoxin/protein di 98.7 1.1E-08 2.4E-13 74.5 3.8 59 25-88 46-111 (383)
130 TIGR03143 AhpF_homolog putativ 98.7 2.4E-08 5.1E-13 75.9 4.8 69 16-91 467-540 (555)
131 cd03012 TlpA_like_DipZ_like Tl 98.7 9.7E-08 2.1E-12 59.1 6.7 37 25-61 22-64 (126)
132 cd03040 GST_N_mPGES2 GST_N fam 98.7 3.4E-07 7.5E-12 51.8 8.4 68 28-101 1-72 (77)
133 cd03037 GST_N_GRX2 GST_N famil 98.7 3E-07 6.5E-12 51.3 8.0 66 31-101 3-69 (71)
134 TIGR01626 ytfJ_HI0045 conserve 98.7 2.2E-08 4.8E-13 66.0 3.5 39 25-63 58-104 (184)
135 cd01659 TRX_superfamily Thiore 98.6 1.8E-07 3.9E-12 49.7 6.2 56 30-87 2-60 (69)
136 smart00594 UAS UAS domain. 98.6 1.7E-07 3.8E-12 57.9 6.8 91 12-110 15-121 (122)
137 PTZ00056 glutathione peroxidas 98.6 4.2E-08 9E-13 65.6 4.3 37 25-61 38-80 (199)
138 TIGR02661 MauD methylamine deh 98.6 1.3E-07 2.8E-12 62.7 6.6 66 25-91 73-160 (189)
139 PRK15317 alkyl hydroperoxide r 98.6 6.3E-08 1.4E-12 73.0 5.5 72 16-92 107-181 (517)
140 KOG1731 FAD-dependent sulfhydr 98.6 9.7E-09 2.1E-13 76.7 1.1 56 29-84 60-120 (606)
141 cd02966 TlpA_like_family TlpA- 98.6 2E-07 4.4E-12 55.6 6.5 62 26-87 19-105 (116)
142 cd03041 GST_N_2GST_N GST_N fam 98.6 9.8E-07 2.1E-11 50.1 8.8 71 29-102 2-74 (77)
143 cd03059 GST_N_SspA GST_N famil 98.6 9.3E-07 2E-11 49.4 8.6 68 30-101 2-69 (73)
144 cd03045 GST_N_Delta_Epsilon GS 98.6 8.5E-07 1.8E-11 49.7 8.1 71 30-101 2-72 (74)
145 KOG2824 Glutaredoxin-related p 98.6 4.6E-07 9.9E-12 62.4 8.0 74 38-114 148-225 (281)
146 PLN02399 phospholipid hydroper 98.6 7.6E-08 1.7E-12 65.9 4.1 37 25-61 98-140 (236)
147 PF08534 Redoxin: Redoxin; In 98.6 5.1E-07 1.1E-11 57.1 7.6 41 24-64 26-73 (146)
148 cd03051 GST_N_GTT2_like GST_N 98.5 8.7E-07 1.9E-11 49.4 7.2 70 30-100 2-72 (74)
149 PF13728 TraF: F plasmid trans 98.5 5.3E-07 1.1E-11 61.0 7.2 70 17-86 112-189 (215)
150 TIGR03140 AhpF alkyl hydropero 98.5 2.2E-07 4.8E-12 70.1 5.7 73 15-92 107-182 (515)
151 cd03055 GST_N_Omega GST_N fami 98.5 3.4E-06 7.3E-11 49.3 9.0 71 26-100 16-87 (89)
152 cd02969 PRX_like1 Peroxiredoxi 98.4 3.8E-07 8.3E-12 59.3 4.9 67 25-91 24-123 (171)
153 PF13417 GST_N_3: Glutathione 98.4 3E-06 6.6E-11 47.8 7.7 67 31-101 1-67 (75)
154 cd03056 GST_N_4 GST_N family, 98.4 4E-06 8.8E-11 46.6 8.1 70 30-100 2-71 (73)
155 PF14595 Thioredoxin_9: Thiore 98.4 7.7E-08 1.7E-12 60.1 0.7 74 17-92 33-112 (129)
156 COG2143 Thioredoxin-related pr 98.4 5.7E-07 1.2E-11 57.3 4.6 79 30-111 47-146 (182)
157 PF05768 DUF836: Glutaredoxin- 98.4 3.8E-06 8.3E-11 48.3 7.5 55 28-88 1-57 (81)
158 PF03190 Thioredox_DsbH: Prote 98.4 2.3E-06 5.1E-11 55.3 7.0 63 25-92 36-117 (163)
159 cd00340 GSH_Peroxidase Glutath 98.4 1.4E-06 3E-11 55.8 5.8 37 25-62 21-63 (152)
160 PRK10877 protein disulfide iso 98.4 1.8E-06 4E-11 59.0 6.6 79 29-113 111-230 (232)
161 PLN02412 probable glutathione 98.3 1.3E-06 2.8E-11 56.9 5.6 38 25-62 28-71 (167)
162 KOG0191 Thioredoxin/protein di 98.3 5.6E-07 1.2E-11 65.6 3.0 80 27-113 163-251 (383)
163 TIGR02540 gpx7 putative glutat 98.3 2.3E-06 5E-11 54.7 5.3 37 25-61 21-63 (153)
164 COG0526 TrxA Thiol-disulfide i 98.3 1.5E-06 3.2E-11 51.5 4.1 60 26-90 32-101 (127)
165 cd03052 GST_N_GDAP1 GST_N fami 98.3 1.4E-05 3E-10 45.0 7.7 70 30-100 2-71 (73)
166 PRK11509 hydrogenase-1 operon 98.3 1.3E-06 2.8E-11 54.7 3.7 81 28-116 36-126 (132)
167 cd02977 ArsC_family Arsenate R 98.2 6.5E-06 1.4E-10 49.5 6.0 49 29-80 1-49 (105)
168 TIGR02739 TraF type-F conjugat 98.2 6.1E-06 1.3E-10 57.1 6.5 92 16-110 141-244 (256)
169 cd03036 ArsC_like Arsenate Red 98.2 6.7E-06 1.4E-10 50.1 5.9 52 29-83 1-52 (111)
170 KOG3425 Uncharacterized conser 98.2 3E-06 6.5E-11 51.7 4.2 73 10-86 12-101 (128)
171 cd03035 ArsC_Yffb Arsenate Red 98.2 9.4E-06 2E-10 49.0 5.9 49 29-77 1-49 (105)
172 PRK13703 conjugal pilus assemb 98.1 6.6E-06 1.4E-10 56.7 5.8 93 16-111 134-238 (248)
173 cd03017 PRX_BCP Peroxiredoxin 98.1 6.1E-06 1.3E-10 51.6 5.2 38 26-63 23-67 (140)
174 PF06110 DUF953: Eukaryotic pr 98.1 1.7E-05 3.8E-10 48.8 6.8 60 26-86 19-95 (119)
175 PTZ00256 glutathione peroxidas 98.1 8.5E-06 1.8E-10 53.7 5.8 37 25-61 39-82 (183)
176 TIGR01617 arsC_related transcr 98.1 4.5E-06 9.7E-11 51.3 4.1 49 29-77 1-49 (117)
177 cd03061 GST_N_CLIC GST_N famil 98.1 6.4E-05 1.4E-09 44.2 8.0 63 35-101 20-82 (91)
178 PRK01655 spxA transcriptional 98.0 1.9E-05 4.2E-10 49.4 6.0 37 29-65 2-38 (131)
179 PF04908 SH3BGR: SH3-binding, 98.0 0.00018 3.8E-09 42.9 9.5 80 29-111 3-97 (99)
180 cd03053 GST_N_Phi GST_N family 98.0 0.00012 2.5E-09 41.1 8.5 72 29-101 2-73 (76)
181 cd03014 PRX_Atyp2cys Peroxired 98.0 5.9E-06 1.3E-10 52.0 3.3 39 25-63 25-68 (143)
182 cd03076 GST_N_Pi GST_N family, 98.0 0.00016 3.6E-09 40.4 8.6 69 29-101 2-70 (73)
183 cd02991 UAS_ETEA UAS family, E 98.0 2.1E-05 4.7E-10 48.2 5.3 83 25-113 16-112 (116)
184 KOG3029 Glutathione S-transfer 98.0 0.00012 2.6E-09 51.1 9.3 80 28-113 90-175 (370)
185 KOG0913 Thiol-disulfide isomer 98.0 5.9E-07 1.3E-11 60.7 -2.0 87 18-113 32-125 (248)
186 cd03058 GST_N_Tau GST_N family 98.0 0.00022 4.7E-09 39.9 8.8 68 30-101 2-70 (74)
187 cd03032 ArsC_Spx Arsenate Redu 98.0 4.8E-05 1E-09 46.6 6.4 37 29-65 2-38 (115)
188 PRK00522 tpx lipid hydroperoxi 98.0 3.4E-05 7.3E-10 50.2 6.1 39 25-63 43-86 (167)
189 cd02970 PRX_like2 Peroxiredoxi 97.9 1.3E-05 2.8E-10 50.5 3.6 58 25-85 22-86 (149)
190 cd03054 GST_N_Metaxin GST_N fa 97.9 0.0001 2.2E-09 41.0 6.8 57 35-102 14-70 (72)
191 cd03020 DsbA_DsbC_DsbG DsbA fa 97.9 0.00011 2.4E-09 48.9 8.1 66 29-94 81-187 (197)
192 cd03018 PRX_AhpE_like Peroxire 97.9 1.3E-05 2.7E-10 50.7 3.4 37 27-63 29-72 (149)
193 cd03023 DsbA_Com1_like DsbA fa 97.9 0.00011 2.3E-09 46.4 7.6 25 74-98 123-147 (154)
194 PRK13344 spxA transcriptional 97.9 6.3E-05 1.4E-09 47.2 6.3 38 29-66 2-39 (132)
195 PRK12559 transcriptional regul 97.9 7.6E-05 1.6E-09 46.8 6.6 38 29-66 2-39 (131)
196 cd03049 GST_N_3 GST_N family, 97.9 0.00022 4.8E-09 39.7 8.0 67 30-100 2-71 (73)
197 cd02972 DsbA_family DsbA famil 97.8 0.00015 3.2E-09 41.9 7.0 60 30-89 2-92 (98)
198 COG4545 Glutaredoxin-related p 97.8 0.0001 2.3E-09 41.3 5.5 63 30-92 5-77 (85)
199 cd03042 GST_N_Zeta GST_N famil 97.8 0.00027 5.9E-09 39.1 7.4 69 31-100 3-71 (73)
200 cd02968 SCO SCO (an acronym fo 97.8 0.0001 2.2E-09 46.1 6.0 53 25-77 21-85 (142)
201 cd03050 GST_N_Theta GST_N fami 97.8 0.00037 8.1E-09 39.1 7.7 71 30-101 2-72 (76)
202 PRK10606 btuE putative glutath 97.8 7.6E-05 1.6E-09 49.4 5.3 65 25-92 24-105 (183)
203 cd03033 ArsC_15kD Arsenate Red 97.7 0.00017 3.7E-09 44.0 6.3 39 29-67 2-40 (113)
204 PF02114 Phosducin: Phosducin; 97.7 1.8E-05 3.9E-10 55.2 1.8 84 28-117 148-241 (265)
205 PRK09481 sspA stringent starva 97.7 0.00071 1.5E-08 45.4 9.2 69 29-101 11-79 (211)
206 PF00578 AhpC-TSA: AhpC/TSA fa 97.7 0.00016 3.4E-09 44.1 5.3 40 25-64 24-70 (124)
207 cd03039 GST_N_Sigma_like GST_N 97.6 0.00052 1.1E-08 38.1 6.8 69 30-101 2-70 (72)
208 PF13409 GST_N_2: Glutathione 97.6 0.00025 5.5E-09 39.4 5.1 67 36-102 1-68 (70)
209 COG1393 ArsC Arsenate reductas 97.6 0.00043 9.3E-09 42.6 6.4 50 28-77 2-51 (117)
210 cd03038 GST_N_etherase_LigE GS 97.6 0.00032 6.8E-09 40.2 5.6 66 35-102 14-80 (84)
211 cd03044 GST_N_EF1Bgamma GST_N 97.6 0.00082 1.8E-08 37.7 7.1 69 31-101 3-72 (75)
212 KOG1672 ATP binding protein [P 97.6 7.8E-05 1.7E-09 49.3 3.1 78 16-98 74-160 (211)
213 cd03047 GST_N_2 GST_N family, 97.5 0.0016 3.5E-08 36.2 7.9 70 30-100 2-71 (73)
214 cd03048 GST_N_Ure2p_like GST_N 97.5 0.0019 4E-08 36.6 8.3 70 30-101 3-75 (81)
215 cd03016 PRX_1cys Peroxiredoxin 97.5 3.7E-05 8.1E-10 51.5 1.2 37 27-63 26-69 (203)
216 cd03015 PRX_Typ2cys Peroxiredo 97.5 0.00013 2.8E-09 47.6 3.3 39 25-63 28-73 (173)
217 cd02971 PRX_family Peroxiredox 97.5 0.00047 1E-08 42.9 5.6 39 25-63 21-66 (140)
218 TIGR03137 AhpC peroxiredoxin. 97.5 4.5E-05 9.9E-10 50.5 1.0 39 25-63 30-75 (187)
219 cd03019 DsbA_DsbA DsbA family, 97.4 0.00062 1.3E-08 44.1 6.2 22 29-50 19-40 (178)
220 PRK11657 dsbG disulfide isomer 97.4 0.00027 5.8E-09 49.0 4.3 22 29-50 121-142 (251)
221 TIGR00014 arsC arsenate reduct 97.4 0.00088 1.9E-08 40.9 6.1 49 29-77 1-49 (114)
222 cd03080 GST_N_Metaxin_like GST 97.4 0.0026 5.6E-08 35.6 7.7 56 36-102 16-71 (75)
223 PRK13191 putative peroxiredoxi 97.4 4.1E-05 8.9E-10 51.8 0.0 40 25-64 32-78 (215)
224 PRK10382 alkyl hydroperoxide r 97.4 0.00013 2.8E-09 48.4 2.3 39 25-63 30-75 (187)
225 PRK15113 glutathione S-transfe 97.4 0.0026 5.6E-08 42.7 8.7 74 27-101 4-79 (214)
226 PRK10387 glutaredoxin 2; Provi 97.4 0.0019 4.1E-08 43.0 7.9 68 30-102 2-70 (210)
227 PRK13190 putative peroxiredoxi 97.3 0.00017 3.6E-09 48.4 2.6 39 25-63 26-71 (202)
228 cd03034 ArsC_ArsC Arsenate Red 97.3 0.001 2.3E-08 40.5 5.9 49 29-77 1-49 (112)
229 KOG0914 Thioredoxin-like prote 97.3 0.00016 3.6E-09 48.7 1.9 58 30-92 148-219 (265)
230 TIGR02182 GRXB Glutaredoxin, G 97.3 0.0033 7.1E-08 42.2 8.2 67 31-102 2-69 (209)
231 PRK09437 bcp thioredoxin-depen 97.2 0.0017 3.6E-08 41.3 6.3 39 25-63 29-74 (154)
232 PRK10026 arsenate reductase; P 97.2 0.0019 4.2E-08 41.0 6.3 39 28-66 3-41 (141)
233 PLN02378 glutathione S-transfe 97.2 0.0042 9.1E-08 41.8 8.4 64 35-102 18-81 (213)
234 COG1331 Highly conserved prote 97.2 0.00056 1.2E-08 52.9 4.5 68 24-91 41-122 (667)
235 PRK10853 putative reductase; P 97.2 0.0019 4.2E-08 39.7 5.9 49 29-77 2-50 (118)
236 PRK13599 putative peroxiredoxi 97.1 0.00027 5.9E-09 47.9 2.1 39 25-63 27-72 (215)
237 cd03046 GST_N_GTT1_like GST_N 97.1 0.0061 1.3E-07 33.8 7.3 69 31-101 3-71 (76)
238 PTZ00137 2-Cys peroxiredoxin; 97.1 0.00078 1.7E-08 47.0 3.9 39 25-63 97-142 (261)
239 cd03057 GST_N_Beta GST_N famil 97.1 0.0073 1.6E-07 33.8 7.3 69 31-101 3-72 (77)
240 TIGR00862 O-ClC intracellular 97.1 0.0067 1.4E-07 41.7 8.3 64 35-102 17-80 (236)
241 TIGR01616 nitro_assoc nitrogen 97.1 0.0036 7.7E-08 39.0 6.4 38 28-65 2-39 (126)
242 KOG0868 Glutathione S-transfer 97.0 0.0016 3.5E-08 42.7 4.8 74 26-101 4-78 (217)
243 PRK15000 peroxidase; Provision 97.0 0.00086 1.9E-08 44.9 3.6 39 25-63 33-78 (200)
244 KOG3414 Component of the U4/U6 97.0 0.0037 8.1E-08 38.7 5.8 60 27-91 24-90 (142)
245 PLN02817 glutathione dehydroge 97.0 0.0081 1.7E-07 42.0 8.3 63 35-101 71-133 (265)
246 KOG0911 Glutaredoxin-related p 97.0 0.00029 6.2E-09 47.6 1.0 62 25-91 16-83 (227)
247 PLN02473 glutathione S-transfe 97.0 0.0086 1.9E-07 40.0 8.0 71 30-101 4-74 (214)
248 COG3019 Predicted metal-bindin 96.9 0.0031 6.7E-08 39.7 5.2 62 25-93 24-89 (149)
249 cd03043 GST_N_1 GST_N family, 96.9 0.012 2.5E-07 32.8 7.2 64 35-100 8-71 (73)
250 PHA03075 glutaredoxin-like pro 96.9 0.0014 3E-08 39.9 3.4 35 28-62 4-38 (123)
251 cd03077 GST_N_Alpha GST_N fami 96.7 0.015 3.2E-07 32.9 6.8 68 30-101 3-72 (79)
252 PRK13189 peroxiredoxin; Provis 96.7 0.0012 2.5E-08 45.0 2.3 39 25-63 34-79 (222)
253 PF03960 ArsC: ArsC family; I 96.6 0.0076 1.6E-07 36.4 5.2 47 32-78 1-47 (110)
254 TIGR01262 maiA maleylacetoacet 96.5 0.013 2.8E-07 39.0 6.2 71 31-101 2-72 (210)
255 KOG0406 Glutathione S-transfer 96.3 0.059 1.3E-06 37.0 8.6 72 27-102 8-80 (231)
256 COG2999 GrxB Glutaredoxin 2 [P 96.1 0.015 3.2E-07 38.3 4.6 67 31-102 3-70 (215)
257 COG3634 AhpF Alkyl hydroperoxi 96.1 0.014 3.1E-07 42.6 4.8 71 15-92 106-181 (520)
258 PRK13972 GSH-dependent disulfi 96.0 0.082 1.8E-06 35.4 8.3 71 30-102 3-80 (215)
259 COG0625 Gst Glutathione S-tran 96.0 0.039 8.4E-07 36.8 6.7 70 30-101 2-72 (211)
260 KOG1422 Intracellular Cl- chan 95.8 0.096 2.1E-06 35.3 7.5 61 36-100 20-80 (221)
261 PF11009 DUF2847: Protein of u 95.7 0.1 2.2E-06 31.5 6.8 67 25-92 18-92 (105)
262 KOG3171 Conserved phosducin-li 95.6 0.046 9.9E-07 37.1 5.5 87 25-117 158-254 (273)
263 PRK11752 putative S-transferas 95.6 0.15 3.2E-06 35.5 8.3 72 28-101 44-125 (264)
264 PLN02395 glutathione S-transfe 95.5 0.15 3.2E-06 34.0 7.9 72 29-102 3-74 (215)
265 KOG0867 Glutathione S-transfer 95.5 0.099 2.2E-06 35.6 7.1 73 29-102 3-75 (226)
266 cd03013 PRX5_like Peroxiredoxi 95.4 0.02 4.3E-07 36.8 3.1 52 25-78 28-88 (155)
267 PF13462 Thioredoxin_4: Thiore 95.4 0.011 2.3E-07 37.6 1.8 21 73-93 129-149 (162)
268 PF02966 DIM1: Mitosis protein 95.3 0.044 9.6E-07 34.3 4.4 59 27-91 21-87 (133)
269 PRK10357 putative glutathione 95.2 0.16 3.5E-06 33.5 7.1 68 31-102 3-71 (202)
270 cd03075 GST_N_Mu GST_N family, 95.2 0.28 6.1E-06 27.8 8.2 71 31-101 3-78 (82)
271 PTZ00253 tryparedoxin peroxida 95.2 0.056 1.2E-06 36.1 4.8 39 25-63 35-80 (199)
272 PF02798 GST_N: Glutathione S- 94.6 0.4 8.6E-06 26.7 9.1 66 35-101 7-74 (76)
273 TIGR03143 AhpF_homolog putativ 94.5 0.32 6.9E-06 37.5 8.1 70 9-85 350-424 (555)
274 PRK10954 periplasmic protein d 94.2 0.069 1.5E-06 35.8 3.5 21 73-93 160-180 (207)
275 PRK10542 glutathionine S-trans 94.2 0.28 6E-06 32.3 6.4 70 31-101 3-73 (201)
276 cd03022 DsbA_HCCA_Iso DsbA fam 93.3 0.19 4.1E-06 32.8 4.3 28 72-99 159-186 (192)
277 COG5429 Uncharacterized secret 92.5 0.31 6.7E-06 33.6 4.4 58 32-89 48-122 (261)
278 PF13462 Thioredoxin_4: Thiore 92.4 0.2 4.4E-06 31.7 3.4 18 30-47 17-34 (162)
279 PF07315 DUF1462: Protein of u 92.4 1.4 2.9E-05 25.8 8.2 61 31-92 2-79 (93)
280 PF11287 DUF3088: Protein of u 91.9 0.72 1.6E-05 28.1 5.1 49 36-88 23-76 (112)
281 KOG3170 Conserved phosducin-li 91.6 0.47 1E-05 32.0 4.4 89 18-114 103-201 (240)
282 PF10865 DUF2703: Domain of un 90.8 0.95 2.1E-05 28.0 5.0 50 35-92 13-73 (120)
283 PF04134 DUF393: Protein of un 90.5 0.9 2E-05 27.2 4.8 67 31-102 1-75 (114)
284 COG5494 Predicted thioredoxin/ 90.5 1.3 2.9E-05 30.1 5.8 59 26-91 10-70 (265)
285 cd03024 DsbA_FrnE DsbA family, 90.5 0.14 3.1E-06 33.7 1.2 19 72-90 167-185 (201)
286 PTZ00057 glutathione s-transfe 89.7 4.3 9.4E-05 26.9 8.4 71 29-101 5-79 (205)
287 PF01323 DSBA: DSBA-like thior 89.5 0.64 1.4E-05 30.2 3.8 26 72-97 159-185 (193)
288 PF06764 DUF1223: Protein of u 87.8 0.51 1.1E-05 31.8 2.4 59 31-89 4-79 (202)
289 cd03078 GST_N_Metaxin1_like GS 87.5 3.3 7.2E-05 22.9 6.7 57 35-102 14-70 (73)
290 COG1651 DsbG Protein-disulfide 87.4 0.49 1.1E-05 32.3 2.2 35 72-112 207-241 (244)
291 KOG1695 Glutathione S-transfer 86.6 6.5 0.00014 26.6 7.2 69 29-101 4-72 (206)
292 cd03079 GST_N_Metaxin2 GST_N f 86.5 4.1 8.8E-05 22.9 6.4 58 35-102 15-72 (74)
293 COG2761 FrnE Predicted dithiol 86.2 0.44 9.5E-06 32.6 1.4 37 72-113 176-212 (225)
294 PRK13730 conjugal transfer pil 86.0 0.96 2.1E-05 30.5 2.9 17 70-86 152-168 (212)
295 COG4837 Uncharacterized protei 85.6 5.6 0.00012 23.5 6.6 65 28-92 6-86 (106)
296 PRK10954 periplasmic protein d 85.1 0.69 1.5E-05 31.0 2.0 19 29-47 41-59 (207)
297 COG1225 Bcp Peroxiredoxin [Pos 84.8 1.2 2.6E-05 28.9 2.8 39 26-64 30-75 (157)
298 KOG2640 Thioredoxin [Function 84.3 0.24 5.3E-06 35.3 -0.5 67 17-87 64-138 (319)
299 PF09673 TrbC_Ftype: Type-F co 83.7 7.6 0.00016 23.6 6.8 75 4-88 4-80 (113)
300 KOG2507 Ubiquitin regulatory p 83.5 3.1 6.7E-05 31.3 4.8 82 25-112 17-109 (506)
301 PF07449 HyaE: Hydrogenase-1 e 82.1 3.5 7.7E-05 24.9 4.0 62 26-92 26-96 (107)
302 TIGR03759 conj_TIGR03759 integ 81.3 12 0.00025 25.3 6.5 55 25-83 108-162 (200)
303 PF06953 ArsD: Arsenical resis 80.1 1.1 2.4E-05 27.8 1.4 60 46-110 35-98 (123)
304 PF01216 Calsequestrin: Calseq 79.2 1.3 2.8E-05 32.4 1.6 50 54-112 91-142 (383)
305 TIGR02742 TrbC_Ftype type-F co 79.0 9.1 0.0002 24.0 5.2 71 4-86 5-77 (130)
306 PF01323 DSBA: DSBA-like thior 78.4 2.3 4.9E-05 27.6 2.5 35 29-63 2-41 (193)
307 COG1651 DsbG Protein-disulfide 77.7 11 0.00023 25.7 5.8 35 29-63 88-127 (244)
308 PF06053 DUF929: Domain of unk 76.0 2.2 4.7E-05 29.8 2.0 19 26-44 58-77 (249)
309 PF13848 Thioredoxin_6: Thiore 76.0 14 0.00031 23.5 5.8 52 29-85 98-156 (184)
310 KOG2603 Oligosaccharyltransfer 75.0 9.8 0.00021 27.5 5.0 52 30-86 65-132 (331)
311 PF02630 SCO1-SenC: SCO1/SenC; 72.5 13 0.00028 24.2 4.9 53 25-77 51-114 (174)
312 KOG4023 Uncharacterized conser 70.0 19 0.00041 21.6 4.6 84 29-112 4-98 (108)
313 PF07912 ERp29_N: ERp29, N-ter 70.0 1.1 2.5E-05 27.8 -0.4 63 53-117 54-122 (126)
314 cd03025 DsbA_FrnE_like DsbA fa 69.7 3.6 7.9E-05 26.7 1.9 22 29-50 3-24 (193)
315 COG3011 Predicted thiol-disulf 69.2 26 0.00057 22.2 5.8 70 25-99 6-81 (137)
316 cd03021 DsbA_GSTK DsbA family, 69.2 6.8 0.00015 26.1 3.1 26 74-99 173-203 (209)
317 cd02981 PDI_b_family Protein D 68.9 16 0.00035 20.7 4.4 50 26-84 17-68 (97)
318 PF13743 Thioredoxin_5: Thiore 68.8 5 0.00011 26.2 2.3 20 31-50 2-21 (176)
319 PF03227 GILT: Gamma interfero 65.6 5.1 0.00011 24.0 1.8 16 28-43 2-17 (108)
320 COG3917 NahD 2-hydroxychromene 59.7 26 0.00055 23.5 4.3 25 75-99 171-195 (203)
321 PF10568 Tom37: Outer mitochon 57.4 32 0.00068 19.0 6.0 54 37-101 14-71 (72)
322 cd02983 P5_C P5 family, C-term 56.4 24 0.00051 21.9 3.7 58 50-113 53-114 (130)
323 KOG4244 Failed axon connection 55.3 47 0.001 23.6 5.2 53 37-100 61-113 (281)
324 COG0386 BtuE Glutathione perox 51.4 66 0.0014 21.0 7.2 68 25-93 24-106 (162)
325 KOG2244 Highly conserved prote 47.7 28 0.0006 27.5 3.4 60 24-83 110-180 (786)
326 PRK15317 alkyl hydroperoxide r 46.8 75 0.0016 24.4 5.7 27 26-52 18-45 (517)
327 COG0019 LysA Diaminopimelate d 46.2 89 0.0019 23.4 5.8 50 9-58 33-82 (394)
328 TIGR03757 conj_TIGR03757 integ 45.5 18 0.0004 22.1 1.8 17 75-91 79-95 (113)
329 PF07511 DUF1525: Protein of u 45.3 24 0.00052 21.6 2.3 17 75-91 78-94 (114)
330 cd05295 MDH_like Malate dehydr 45.2 1E+02 0.0022 23.7 6.0 64 35-100 2-80 (452)
331 KOG1467 Translation initiation 43.5 1.6E+02 0.0034 23.1 6.9 58 24-84 357-414 (556)
332 cd02978 KaiB_like KaiB-like fa 43.5 60 0.0013 18.2 4.4 50 32-86 7-61 (72)
333 COG0266 Nei Formamidopyrimidin 43.5 6.6 0.00014 27.8 -0.4 7 35-41 266-272 (273)
334 PF15643 Tox-PL-2: Papain fold 42.7 70 0.0015 19.1 3.9 27 36-62 20-47 (100)
335 PF09654 DUF2396: Protein of u 42.5 7.5 0.00016 24.7 -0.2 13 35-47 7-19 (161)
336 COG0151 PurD Phosphoribosylami 42.4 94 0.002 23.7 5.4 49 1-49 229-303 (428)
337 TIGR02652 conserved hypothetic 42.4 7.8 0.00017 24.7 -0.1 13 35-47 10-22 (163)
338 COG3581 Uncharacterized protei 41.6 83 0.0018 23.8 4.9 35 28-62 72-113 (420)
339 TIGR02654 circ_KaiB circadian 41.4 72 0.0016 18.6 4.7 50 32-86 9-63 (87)
340 PRK09301 circadian clock prote 39.8 85 0.0018 18.9 4.7 50 32-86 12-66 (103)
341 cd02974 AhpF_NTD_N Alkyl hydro 39.1 80 0.0017 18.4 4.9 35 15-52 9-45 (94)
342 TIGR01689 EcbF-BcbF capsule bi 38.8 58 0.0013 20.2 3.4 18 44-61 70-87 (126)
343 COG0678 AHP1 Peroxiredoxin [Po 37.6 1.2E+02 0.0025 19.8 5.0 41 20-60 31-82 (165)
344 cd03022 DsbA_HCCA_Iso DsbA fam 37.6 36 0.00078 21.9 2.5 21 30-50 2-22 (192)
345 PF06180 CbiK: Cobalt chelatas 36.9 55 0.0012 23.1 3.4 103 9-115 120-234 (262)
346 PRK14811 formamidopyrimidine-D 36.1 5.5 0.00012 28.0 -1.7 10 35-44 256-265 (269)
347 KOG3975 Uncharacterized conser 36.0 72 0.0016 22.8 3.7 30 9-38 223-257 (301)
348 KOG4420 Uncharacterized conser 34.9 41 0.0009 24.0 2.4 71 29-100 27-97 (325)
349 PRK01103 formamidopyrimidine/5 33.3 11 0.00025 26.4 -0.5 7 35-41 266-272 (274)
350 COG1054 Predicted sulfurtransf 32.8 1.6E+02 0.0034 21.4 5.1 43 10-53 156-198 (308)
351 PRK13945 formamidopyrimidine-D 32.6 13 0.00028 26.4 -0.3 7 35-41 275-281 (282)
352 PF00837 T4_deiodinase: Iodoth 32.5 12 0.00027 25.9 -0.4 48 3-50 77-127 (237)
353 COG1062 AdhC Zn-dependent alco 32.4 24 0.00051 26.1 1.0 18 25-42 79-96 (366)
354 TIGR03140 AhpF alkyl hydropero 32.2 1.7E+02 0.0038 22.5 5.7 36 15-52 9-45 (515)
355 PRK14810 formamidopyrimidine-D 31.6 14 0.0003 26.0 -0.3 7 35-41 265-271 (272)
356 PF04592 SelP_N: Selenoprotein 31.3 1.5E+02 0.0032 20.8 4.6 40 26-65 26-74 (238)
357 TIGR03865 PQQ_CXXCW PQQ-depend 31.2 1.5E+02 0.0032 19.1 4.5 29 25-53 115-143 (162)
358 PF14673 DUF4459: Domain of un 29.8 29 0.00063 21.2 0.9 14 25-38 89-102 (159)
359 PF06827 zf-FPG_IleRS: Zinc fi 29.3 7.9 0.00017 17.4 -1.2 11 32-42 19-29 (30)
360 PF07728 AAA_5: AAA domain (dy 28.9 1.4E+02 0.003 18.0 4.6 37 28-64 1-37 (139)
361 PRK10445 endonuclease VIII; Pr 28.7 17 0.00037 25.5 -0.2 14 8-21 190-203 (263)
362 COG5270 PUA domain (predicted 28.7 26 0.00055 23.5 0.6 50 27-78 5-68 (202)
363 PF14421 LmjF365940-deam: A di 28.4 85 0.0018 21.0 2.9 28 36-63 156-183 (193)
364 PF15616 TerY-C: TerY-C metal 28.2 20 0.00043 22.5 0.0 12 32-43 75-86 (131)
365 COG3531 Predicted protein-disu 27.4 43 0.00093 22.8 1.5 25 29-53 4-28 (212)
366 KOG2792 Putative cytochrome C 26.3 2.5E+02 0.0054 20.1 6.0 41 26-66 139-191 (280)
367 COG5309 Exo-beta-1,3-glucanase 26.2 2.5E+02 0.0055 20.2 5.7 40 11-54 63-103 (305)
368 PRK02935 hypothetical protein; 25.7 16 0.00034 22.1 -0.7 15 36-50 72-86 (110)
369 PF07895 DUF1673: Protein of u 24.6 19 0.00041 24.3 -0.6 11 35-45 12-22 (205)
370 cd06829 PLPDE_III_CANSDC Type 23.8 2.6E+02 0.0056 20.3 5.1 48 9-56 7-54 (346)
371 KOG3160 Gamma-interferon induc 23.4 69 0.0015 22.0 2.0 22 29-50 43-69 (220)
372 PF10114 PocR: Sensory domain 22.9 1.9E+02 0.0042 18.3 4.0 37 8-44 5-49 (173)
373 PF04900 Fcf1: Fcf1; InterPro 22.5 1.1E+02 0.0024 17.8 2.5 20 71-90 75-95 (101)
374 PF15379 DUF4606: Domain of un 22.2 76 0.0016 19.1 1.7 15 34-48 31-45 (104)
375 KOG4700 Uncharacterized homolo 22.0 1.3E+02 0.0028 20.2 2.9 26 67-92 100-126 (207)
376 COG3529 Predicted nucleic-acid 21.6 74 0.0016 17.2 1.4 19 35-53 11-31 (66)
377 PRK08105 flavodoxin; Provision 21.5 1.6E+02 0.0034 18.6 3.2 22 27-48 2-23 (149)
378 COG3769 Predicted hydrolase (H 21.2 2E+02 0.0043 20.2 3.8 47 41-89 26-73 (274)
379 PF14431 YwqJ-deaminase: YwqJ- 21.2 52 0.0011 20.3 1.0 14 33-46 109-122 (125)
380 KOG2990 C2C2-type Zn-finger pr 20.6 1.2E+02 0.0027 21.8 2.7 20 26-45 40-63 (317)
381 cd03067 PDI_b_PDIR_N PDIb fami 20.5 2.2E+02 0.0047 17.3 5.2 70 25-97 18-98 (112)
382 TIGR01047 nspC carboxynorsperm 20.4 2.8E+02 0.0061 20.5 4.8 46 9-54 9-54 (380)
383 TIGR01754 flav_RNR ribonucleot 20.4 1.7E+02 0.0036 18.0 3.2 22 28-49 2-23 (140)
384 PF09822 ABC_transp_aux: ABC-t 20.3 3.1E+02 0.0066 19.0 6.4 65 15-82 15-90 (271)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.89 E-value=4.7e-22 Score=119.10 Aligned_cols=95 Identities=44% Similarity=0.752 Sum_probs=87.8
Q ss_pred hhhCCCCEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 22 EIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 22 ~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
..+++.+|++|..+|||+|.+++.+|++.+.+|.+++++.++...++++.+.+..|..++|+||++|+++||++++....
T Consensus 3 ~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l~ 82 (99)
T TIGR02189 3 RMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMALH 82 (99)
T ss_pred hhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHHH
Confidence 34578899999999999999999999999999999999988877777788888889999999999999999999999999
Q ss_pred hCCCcHHHHHhcCCc
Q 033336 102 QGGKLVPLLRDAGAL 116 (121)
Q Consensus 102 ~~~~l~~~l~~~~~~ 116 (121)
..++|.++|+.+++.
T Consensus 83 ~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 83 ISGSLVPMLKQAGAL 97 (99)
T ss_pred HcCCHHHHHHHhCcc
Confidence 999999999998875
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.88 E-value=1.5e-21 Score=118.50 Aligned_cols=100 Identities=24% Similarity=0.496 Sum_probs=89.9
Q ss_pred HHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCC---CceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecC
Q 033336 17 LNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGG 93 (121)
Q Consensus 17 ~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~ 93 (121)
.+.++.+++.++|++|..+|||+|.+++.+|++.+. +|..++++......+++.++.+..|..++|+||++|+++||
T Consensus 3 ~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG 82 (108)
T PHA03050 3 EEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGG 82 (108)
T ss_pred HHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeC
Confidence 355667778899999999999999999999999998 68888888765567788899999999999999999999999
Q ss_pred hHHHHHHHhCCCcHHHHHhcCCc
Q 033336 94 CDTVVEKHQGGKLVPLLRDAGAL 116 (121)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~~~~ 116 (121)
++++..+...++|.++|+++++.
T Consensus 83 ~ddl~~l~~~g~L~~~l~~~~~~ 105 (108)
T PHA03050 83 YSDLLEIDNMDALGDILSSIGVL 105 (108)
T ss_pred hHHHHHHHHcCCHHHHHHHcccc
Confidence 99999999999999999998764
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2e-20 Score=112.18 Aligned_cols=100 Identities=59% Similarity=0.970 Sum_probs=93.7
Q ss_pred HHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHH
Q 033336 17 LNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 96 (121)
Q Consensus 17 ~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~ 96 (121)
.+..+..+.+++|++|..+|||+|.+++..|...+..+.++++|.++++.+++.++.+..|.+++|.+|++|+.+||.++
T Consensus 4 ~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~d 83 (104)
T KOG1752|consen 4 EAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASD 83 (104)
T ss_pred HHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHH
Confidence 44567778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHhcCCc
Q 033336 97 VVEKHQGGKLVPLLRDAGAL 116 (121)
Q Consensus 97 ~~~~~~~~~l~~~l~~~~~~ 116 (121)
+..++..++|..+|+..++.
T Consensus 84 l~~lh~~G~L~~~l~~~~~~ 103 (104)
T KOG1752|consen 84 LMALHKSGELVPLLKEAGAL 103 (104)
T ss_pred HHHHHHcCCHHHHHHHhhcc
Confidence 99999999999999988764
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.85 E-value=4.1e-20 Score=112.83 Aligned_cols=99 Identities=27% Similarity=0.605 Sum_probs=88.4
Q ss_pred HHHHHHHhhhCCCCEEEEee-----CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCe
Q 033336 15 IALNKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGK 89 (121)
Q Consensus 15 ~~~~~~~~~~~~~~v~if~a-----~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~ 89 (121)
+..+.++.++++++|++|.. ||||+|.+++.+|.+++.+|..++++.+ .+++.++.+..|.+++|.||++|+
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d---~~~~~~l~~~sg~~TVPQIFI~G~ 79 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN---PDIRAELPKYANWPTFPQLWVDGE 79 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC---HHHHHHHHHHhCCCCCCeEEECCE
Confidence 45677788889999999988 5999999999999999999988888754 456788999999999999999999
Q ss_pred eecChHHHHHHHhCCCcHHHHHhcCCc
Q 033336 90 HIGGCDTVVEKHQGGKLVPLLRDAGAL 116 (121)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~ 116 (121)
++||++++..+...++|.++|+.+++.
T Consensus 80 ~IGG~ddl~~l~~~G~L~~lL~~~~~~ 106 (115)
T PRK10824 80 LVGGCDIVIEMYQRGELQQLIKETAAK 106 (115)
T ss_pred EEcChHHHHHHHHCCCHHHHHHHHHhh
Confidence 999999999999999999999988753
No 5
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.82 E-value=2e-19 Score=104.28 Aligned_cols=82 Identities=57% Similarity=0.957 Sum_probs=74.8
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHhCCCc
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l 106 (121)
|++|+++|||+|+++++.|.+++.+ |.+++++.+....+.+.++.+.+|+.++|++|++|+.++|++++..+...++|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 4679999999999999999999988 99999998877677777788999999999999999999999999999999999
Q ss_pred HHHH
Q 033336 107 VPLL 110 (121)
Q Consensus 107 ~~~l 110 (121)
..+|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 8764
No 6
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.80 E-value=2.4e-18 Score=102.66 Aligned_cols=90 Identities=32% Similarity=0.695 Sum_probs=78.8
Q ss_pred HHHHhhhCCCCEEEEee-----CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeec
Q 033336 18 NKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIG 92 (121)
Q Consensus 18 ~~~~~~~~~~~v~if~a-----~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~ 92 (121)
+.++.++++++|++|.. ||||+|.+++..|++.+.+|..++++.+ .+.+.++.+..|..++|++|++|+.+|
T Consensus 3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~---~~~~~~l~~~tg~~tvP~vfi~g~~iG 79 (97)
T TIGR00365 3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED---PEIRQGIKEYSNWPTIPQLYVKGEFVG 79 (97)
T ss_pred HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC---HHHHHHHHHHhCCCCCCEEEECCEEEe
Confidence 45566778999999976 8999999999999999999888877543 456778888899999999999999999
Q ss_pred ChHHHHHHHhCCCcHHHH
Q 033336 93 GCDTVVEKHQGGKLVPLL 110 (121)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l 110 (121)
|++++..+...++|.++|
T Consensus 80 G~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 80 GCDIIMEMYQSGELQTLL 97 (97)
T ss_pred ChHHHHHHHHCcChHHhC
Confidence 999999999999998764
No 7
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.78 E-value=5.5e-18 Score=97.86 Aligned_cols=81 Identities=65% Similarity=1.063 Sum_probs=74.4
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHhCCCcH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 107 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l~ 107 (121)
+|++|+++|||+|..+++.|++++.+|.+++++.+.....++.++.+.+|+.++|++|++|+.++|++++..+...++|.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 47789999999999999999999999999999998776667778888999999999999999999999999999999987
Q ss_pred H
Q 033336 108 P 108 (121)
Q Consensus 108 ~ 108 (121)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 5
No 8
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.3e-18 Score=109.43 Aligned_cols=81 Identities=30% Similarity=0.532 Sum_probs=70.6
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTV 97 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~ 97 (121)
++.+|++ |||+||++|+.+.|.|+++..+ +.+.++|++.+ .+++..|+|..+||+ |.||+... ++
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~-----~ela~~Y~I~avPtvlvfknGe~~d---~~ 131 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEH-----PELAEDYEISAVPTVLVFKNGEKVD---RF 131 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccc-----cchHhhcceeeeeEEEEEECCEEee---ee
Confidence 4668888 9999999999999999887554 89999999986 679999999999995 67898885 78
Q ss_pred HHHHhCCCcHHHHHhc
Q 033336 98 VEKHQGGKLVPLLRDA 113 (121)
Q Consensus 98 ~~~~~~~~l~~~l~~~ 113 (121)
.|..+.+.|..+|++.
T Consensus 132 vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 132 VGAVPKEQLRSLIKKF 147 (150)
T ss_pred cccCCHHHHHHHHHHH
Confidence 8998999999999875
No 9
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.74 E-value=5.9e-17 Score=95.47 Aligned_cols=83 Identities=34% Similarity=0.752 Sum_probs=73.6
Q ss_pred hhhCCCCEEEEee-----CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHH
Q 033336 22 EIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDT 96 (121)
Q Consensus 22 ~~~~~~~v~if~a-----~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~ 96 (121)
..+++++|++|.. ||||+|.+++.+|++.+.+|..++++.+ .+++.++.+..|..++|+||++|+++||+++
T Consensus 3 ~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~ 79 (90)
T cd03028 3 KLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGCDI 79 (90)
T ss_pred hhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCHHH
Confidence 4567899999976 6999999999999999999999988754 5667889999999999999999999999999
Q ss_pred HHHHHhCCCcH
Q 033336 97 VVEKHQGGKLV 107 (121)
Q Consensus 97 ~~~~~~~~~l~ 107 (121)
+..+...++|+
T Consensus 80 l~~l~~~g~L~ 90 (90)
T cd03028 80 VKEMHESGELQ 90 (90)
T ss_pred HHHHHHcCCcC
Confidence 99999888874
No 10
>PHA02278 thioredoxin-like protein
Probab=99.73 E-value=2.7e-18 Score=103.42 Aligned_cols=79 Identities=14% Similarity=0.339 Sum_probs=56.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTV 97 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~ 97 (121)
+++++++ |||+|||+|+.+.|.++++..+ ..++.+|++.+.-. .+.+++.+++.++||+ |.+|+.++ ++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d-~~~l~~~~~I~~iPT~i~fk~G~~v~---~~ 88 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVD-REKAVKLFDIMSTPVLIGYKDGQLVK---KY 88 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccc-cHHHHHHCCCccccEEEEEECCEEEE---EE
Confidence 5677777 9999999999999999887543 45777887753110 2468899999999995 56888775 44
Q ss_pred HHHHhCCCcH
Q 033336 98 VEKHQGGKLV 107 (121)
Q Consensus 98 ~~~~~~~~l~ 107 (121)
.|..+.++|.
T Consensus 89 ~G~~~~~~l~ 98 (103)
T PHA02278 89 EDQVTPMQLQ 98 (103)
T ss_pred eCCCCHHHHH
Confidence 4444443333
No 11
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.73 E-value=6.5e-17 Score=92.95 Aligned_cols=79 Identities=41% Similarity=0.865 Sum_probs=70.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHhCCCcHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVP 108 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l~~ 108 (121)
|.+|+.+|||+|.+++.+|++.+.+|..++++.++ +..+++.+..|..++|+||++|+.++|++++..+...++|..
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~---~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP---ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH---HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 46799999999999999999999999999887653 456678888899999999999999999999999999999987
Q ss_pred HH
Q 033336 109 LL 110 (121)
Q Consensus 109 ~l 110 (121)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 64
No 12
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.72 E-value=9.8e-18 Score=102.22 Aligned_cols=72 Identities=19% Similarity=0.347 Sum_probs=56.7
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVV 98 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~ 98 (121)
++.+++ |||+|||+|+.+.|.|+++..+ +.+++||.+.. ++++..|++.++||+ |.+|+.++ ...
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-----~~la~~~~V~~iPTf~~fk~G~~v~---~~~ 85 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-----PDFNKMYELYDPPTVMFFFRNKHMK---IDL 85 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-----HHHHHHcCCCCCCEEEEEECCEEEE---EEc
Confidence 456777 9999999999999999887644 57899999986 679999999999995 66898876 444
Q ss_pred HHHhCCC
Q 033336 99 EKHQGGK 105 (121)
Q Consensus 99 ~~~~~~~ 105 (121)
|..+..+
T Consensus 86 G~~~~~~ 92 (114)
T cd02954 86 GTGNNNK 92 (114)
T ss_pred CCCCCce
Confidence 4433333
No 13
>PRK10638 glutaredoxin 3; Provisional
Probab=99.71 E-value=3.4e-16 Score=90.88 Aligned_cols=81 Identities=35% Similarity=0.723 Sum_probs=72.5
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHhCCCcH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLV 107 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l~ 107 (121)
+|++|..+|||+|++++.+|++.+.+|..++++.+. +..+++.+..|..++|+++++|+.+||++++..+...++|.
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~---~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l~ 79 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA---AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLD 79 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH---HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCHH
Confidence 578899999999999999999999999998887653 33566888889999999999999999999999999999999
Q ss_pred HHHH
Q 033336 108 PLLR 111 (121)
Q Consensus 108 ~~l~ 111 (121)
++|+
T Consensus 80 ~~~~ 83 (83)
T PRK10638 80 PLLK 83 (83)
T ss_pred HHhC
Confidence 8874
No 14
>PTZ00062 glutaredoxin; Provisional
Probab=99.69 E-value=1.2e-15 Score=101.82 Aligned_cols=96 Identities=19% Similarity=0.472 Sum_probs=84.4
Q ss_pred HHHHHHHhhhCCCCEEEEee-----CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCe
Q 033336 15 IALNKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGK 89 (121)
Q Consensus 15 ~~~~~~~~~~~~~~v~if~a-----~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~ 89 (121)
+..+.++.+++.++|++|.. ||||+|++++.+|++.+.+|..++++.+ ++.++.+.+..|.+++|++|++|+
T Consensus 101 ~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d---~~~~~~l~~~sg~~TvPqVfI~G~ 177 (204)
T PTZ00062 101 DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED---PDLREELKVYSNWPTYPQLYVNGE 177 (204)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC---HHHHHHHHHHhCCCCCCeEEECCE
Confidence 45667778889999999977 7999999999999999999888777744 456778888889999999999999
Q ss_pred eecChHHHHHHHhCCCcHHHHHhc
Q 033336 90 HIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
++||++++......++|.++|...
T Consensus 178 ~IGG~d~l~~l~~~G~L~~~l~~~ 201 (204)
T PTZ00062 178 LIGGHDIIKELYESNSLRKVIPDD 201 (204)
T ss_pred EEcChHHHHHHHHcCChhhhhhhh
Confidence 999999999999999999998753
No 15
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.67 E-value=1.3e-15 Score=87.66 Aligned_cols=73 Identities=40% Similarity=0.661 Sum_probs=62.6
Q ss_pred CCCCEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 25 SSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 25 ~~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+.+|++|+.+|||+|.+++..|++.+.+|..++++.+.. ..++...+|..++|++|++|+.++|++++..+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~----~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDAR----GRSLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChH----HHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 4678999999999999999999999999999988876543 235667789999999999999999998887653
No 16
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.65 E-value=3.5e-15 Score=84.74 Aligned_cols=73 Identities=33% Similarity=0.750 Sum_probs=62.2
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCC-CccEEEECCeeecChHHHHHHHhC
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQR-TVPNVFIGGKHIGGCDTVVEKHQG 103 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~-~~P~i~~~g~~~~~~~~~~~~~~~ 103 (121)
+|.+|+.+|||+|.+++..|++.+.+|..++++.+ .+..+++.+..|.. ++|++|++|+.+||++++..+...
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~---~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~ 74 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD---PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERK 74 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhC
Confidence 36789999999999999999999999998888765 34456677777887 999999999999999999887643
No 17
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=2e-16 Score=109.13 Aligned_cols=92 Identities=21% Similarity=0.418 Sum_probs=74.7
Q ss_pred HHHHHhhhCCCCEEE-EeeCCCcchHHHHHHHHHhC----CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCe
Q 033336 17 LNKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLG----TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGK 89 (121)
Q Consensus 17 ~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~ 89 (121)
...+.......+|++ ||+|||++|+...|.|+++. -.|...+||++.. +.++..||++++||+ |.+|+
T Consensus 34 e~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~-----p~vAaqfgiqsIPtV~af~dGq 108 (304)
T COG3118 34 EQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAE-----PMVAAQFGVQSIPTVYAFKDGQ 108 (304)
T ss_pred HHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcc-----hhHHHHhCcCcCCeEEEeeCCc
Confidence 333334445668888 99999999999999997754 4589999999985 779999999999996 77999
Q ss_pred eecChHHHHHHHhCCCcHHHHHhcCCc
Q 033336 90 HIGGCDTVVEKHQGGKLVPLLRDAGAL 116 (121)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~~~~ 116 (121)
.+- .+.|..+++.+.++|+++...
T Consensus 109 pVd---gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 109 PVD---GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred Ccc---ccCCCCcHHHHHHHHHHhcCh
Confidence 886 567788888899999887544
No 18
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.65 E-value=1.1e-16 Score=95.97 Aligned_cols=75 Identities=11% Similarity=0.209 Sum_probs=53.7
Q ss_pred hCCCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCC-CCcHHHHHHHHHHhCCCCccEE-EE-CCeeecChHH
Q 033336 24 VSSNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIE-SDGSKIQAALAEWTGQRTVPNV-FI-GGKHIGGCDT 96 (121)
Q Consensus 24 ~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~-~~~~~~~~~~~~~~~v~~~P~i-~~-~g~~~~~~~~ 96 (121)
.+++.+++ |||+||++|+.+.|.|+++... +.++.+|.+ .. +.+++.|++.++||+ ++ +| ... +
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~-----~~l~~~~~V~~~PT~~lf~~g-~~~---~ 86 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK-----PSLLSRYGVVGFPTILLFNST-PRV---R 86 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC-----HHHHHhcCCeecCEEEEEcCC-cee---E
Confidence 35666777 9999999999999999877544 667788776 33 568899999999996 34 45 332 4
Q ss_pred HHHHHhCCCcH
Q 033336 97 VVEKHQGGKLV 107 (121)
Q Consensus 97 ~~~~~~~~~l~ 107 (121)
+.|..+.+.|.
T Consensus 87 ~~G~~~~~~l~ 97 (100)
T cd02999 87 YNGTRTLDSLA 97 (100)
T ss_pred ecCCCCHHHHH
Confidence 44544444443
No 19
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=4.5e-15 Score=85.55 Aligned_cols=78 Identities=37% Similarity=0.772 Sum_probs=64.7
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHhCCCc
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l 106 (121)
.+++|..++||+|.+++..|++.+.+|..+.++.+.. ++.+..+....|.+++|+||++|+++||.+++......+.|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l 79 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccC
Confidence 4788999999999999999999999999999988774 34445555555899999999999999998787776655543
No 20
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.63 E-value=5.5e-16 Score=93.40 Aligned_cols=65 Identities=15% Similarity=0.238 Sum_probs=50.3
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 92 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~ 92 (121)
++.+++ ||++||++|+.+.|.|+++..+ +.++.+|.+.+. ....+++.+++.++||+ |.+|+.+.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~--~~~~l~~~~~V~~~Pt~~~~~~G~~v~ 85 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDEND--STMELCRREKIIEVPHFLFYKDGEKIH 85 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCCh--HHHHHHHHcCCCcCCEEEEEeCCeEEE
Confidence 566777 9999999999999999876443 678888887642 12468899999999995 45787664
No 21
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.63 E-value=8e-16 Score=94.19 Aligned_cols=99 Identities=29% Similarity=0.398 Sum_probs=66.7
Q ss_pred ChHHHHHHHH-HHHhhhCCCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccE
Q 033336 9 SKEELEIALN-KAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPN 83 (121)
Q Consensus 9 ~~~~~~~~~~-~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~ 83 (121)
+.+...+..+ ..+.+.+...+++ ||++|||+|+.++|.++++... +.+..+|.+.. +++...|++.++||
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~-----~~l~~~~~v~~vPt 78 (113)
T cd02975 4 SDEDRKALKEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDED-----KEKAEKYGVERVPT 78 (113)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcC-----HHHHHHcCCCcCCE
Confidence 3334444444 3444545555666 8999999999999999887643 57788888764 57999999999999
Q ss_pred EEE--CCeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 84 VFI--GGKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 84 i~~--~g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
+++ +|...++. ++.|..+..+|.++|+..
T Consensus 79 ~~i~~~g~~~~~~-~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 79 TIFLQDGGKDGGI-RYYGLPAGYEFASLIEDI 109 (113)
T ss_pred EEEEeCCeecceE-EEEecCchHHHHHHHHHH
Confidence 633 44333222 344555666777777654
No 22
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.4e-16 Score=93.72 Aligned_cols=79 Identities=22% Similarity=0.466 Sum_probs=59.3
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVVE 99 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~~ 99 (121)
++.+++ |||+|||+|+.+.|.+.++..+ ..+++||.++. ..+++.+++..+||+ +.+|+.++ ++.|
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~-----~~~~~~~~V~~~PTf~f~k~g~~~~---~~vG 92 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDEL-----EEVAKEFNVKAMPTFVFYKGGEEVD---EVVG 92 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccC-----HhHHHhcCceEeeEEEEEECCEEEE---EEec
Confidence 356666 9999999999999999988665 57888888873 679999999999996 55777665 4444
Q ss_pred HHhCCCcHHHHHhc
Q 033336 100 KHQGGKLVPLLRDA 113 (121)
Q Consensus 100 ~~~~~~l~~~l~~~ 113 (121)
.... +|.+.++++
T Consensus 93 a~~~-~l~~~i~~~ 105 (106)
T KOG0907|consen 93 ANKA-ELEKKIAKH 105 (106)
T ss_pred CCHH-HHHHHHHhc
Confidence 4322 566655543
No 23
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.62 E-value=3.3e-16 Score=92.87 Aligned_cols=77 Identities=22% Similarity=0.385 Sum_probs=58.4
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC----CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT----SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVV 98 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~ 98 (121)
++++++ ||++||++|+.+.|.+.++.. .+.+..+|.+.. ..+++.+++.++|++ |.+|+.+. .+.
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~~~---~~~ 83 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-----PQIAQQFGVQALPTVYLFAAGQPVD---GFQ 83 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-----HHHHHHcCCCCCCEEEEEeCCEEee---eec
Confidence 456777 999999999999999977543 367889998875 578999999999995 44676654 455
Q ss_pred HHHhCCCcHHHH
Q 033336 99 EKHQGGKLVPLL 110 (121)
Q Consensus 99 ~~~~~~~l~~~l 110 (121)
|..+.++|..+|
T Consensus 84 g~~~~~~l~~~l 95 (96)
T cd02956 84 GAQPEEQLRQML 95 (96)
T ss_pred CCCCHHHHHHHh
Confidence 555556666655
No 24
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.62 E-value=9.2e-15 Score=82.81 Aligned_cols=70 Identities=30% Similarity=0.563 Sum_probs=61.3
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
+|++|+.+|||+|++++.+|++.+.+|..++++.+. +..+++.+..|...+|++|++|+.+||++++..+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~---~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~ 71 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFP---ERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSL 71 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhh
Confidence 578899999999999999999999999988887654 3456788888999999999999999999888764
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.62 E-value=5.6e-16 Score=94.56 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=60.2
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDT 96 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~ 96 (121)
.++++++ ||+|||++|+.+.|.+.++.. ++.+..||.+.. +.++..+++.++||+ |.+|+.+. .
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-----~~l~~~~~V~~~Pt~~i~~~g~~~~---~ 94 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-----RRLARKLGAHSVPAIVGIINGQVTF---Y 94 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-----HHHHHHcCCccCCEEEEEECCEEEE---E
Confidence 4567777 999999999999998866543 367888888764 568899999999995 45787664 4
Q ss_pred HHHHHhCCCcHHHHHh
Q 033336 97 VVEKHQGGKLVPLLRD 112 (121)
Q Consensus 97 ~~~~~~~~~l~~~l~~ 112 (121)
..|..+.++|.++|++
T Consensus 95 ~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 95 HDSSFTKQHVVDFVRK 110 (111)
T ss_pred ecCCCCHHHHHHHHhc
Confidence 4555566667666654
No 26
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.61 E-value=1.2e-14 Score=82.03 Aligned_cols=70 Identities=34% Similarity=0.604 Sum_probs=60.0
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
+|++|..+|||+|.+++..|++.+.+|..++++.+.. ...+....|..++|++|++|+.++|++++..+.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~----~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDIT----GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChh----HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 5788999999999999999999999999888876552 245667789999999999999999998887653
No 27
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.60 E-value=1.2e-15 Score=96.26 Aligned_cols=81 Identities=12% Similarity=0.201 Sum_probs=59.5
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccE-E-EE-CCe-eecChH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPN-V-FI-GGK-HIGGCD 95 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~-i-~~-~g~-~~~~~~ 95 (121)
.++.+++ |||+|||+|+.+.|.|+++..+ ..+++||++.. ++++..|++++.|+ + |+ +|+ .+.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-----~dla~~y~I~~~~t~~~ffk~g~~~vd--- 93 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-----PDFNTMYELYDPCTVMFFFRNKHIMID--- 93 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-----HHHHHHcCccCCCcEEEEEECCeEEEE---
Confidence 3556777 9999999999999999887643 56799999986 68999999997764 4 33 666 443
Q ss_pred HHHH--------HHhCCCcHHHHHhc
Q 033336 96 TVVE--------KHQGGKLVPLLRDA 113 (121)
Q Consensus 96 ~~~~--------~~~~~~l~~~l~~~ 113 (121)
+..| ..+.++|.++++..
T Consensus 94 ~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 94 LGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred EecccccccccccCCHHHHHHHHHHH
Confidence 3334 34566777766554
No 28
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.60 E-value=1.2e-15 Score=91.71 Aligned_cols=78 Identities=14% Similarity=0.324 Sum_probs=55.4
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC-----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS-----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDT 96 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~ 96 (121)
+++++++ |||+||++|+.+.|.++.+..+ +.+..+|.+. ..+++.|+++++||+ |.+|+.+. +
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~------~~~~~~~~v~~~Pt~~~~~~g~~~~---~ 86 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADT------IDTLKRYRGKCEPTFLFYKNGELVA---V 86 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCC------HHHHHHcCCCcCcEEEEEECCEEEE---E
Confidence 3556666 9999999999999998765322 5677787773 457899999999995 55787664 3
Q ss_pred HHHHHhCCCcHHHHHh
Q 033336 97 VVEKHQGGKLVPLLRD 112 (121)
Q Consensus 97 ~~~~~~~~~l~~~l~~ 112 (121)
+.|. +...|.++|+.
T Consensus 87 ~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 87 IRGA-NAPLLNKTITE 101 (102)
T ss_pred EecC-ChHHHHHHHhh
Confidence 4443 44556665543
No 29
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.60 E-value=2.7e-14 Score=90.82 Aligned_cols=83 Identities=25% Similarity=0.568 Sum_probs=73.2
Q ss_pred CEEEEeeC------CCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCC----CCccEEEECCeeecChHHH
Q 033336 28 PVVVFSKT------YCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQ----RTVPNVFIGGKHIGGCDTV 97 (121)
Q Consensus 28 ~v~if~a~------~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v----~~~P~i~~~g~~~~~~~~~ 97 (121)
.|++|+++ +||+|++++.+|+.++++|..++|+.+ .+..+++.+..+. .++|.||++|+++||.+++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~---~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMD---SGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCC---HHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 36778888 999999999999999999998888865 3445677777775 7999999999999999999
Q ss_pred HHHHhCCCcHHHHHhc
Q 033336 98 VEKHQGGKLVPLLRDA 113 (121)
Q Consensus 98 ~~~~~~~~l~~~l~~~ 113 (121)
..+...++|.++|+..
T Consensus 78 ~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 78 LRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHcCCHHHHHhhc
Confidence 9999999999999986
No 30
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.59 E-value=5.7e-16 Score=94.76 Aligned_cols=61 Identities=7% Similarity=0.096 Sum_probs=47.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHH-HHhCCCCccEE--EECCee
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALA-EWTGQRTVPNV--FIGGKH 90 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~v~~~P~i--~~~g~~ 90 (121)
+...+++ ||||||++|+.+.|.++++... +.+.+||.+.+ ..++ +.|++.++||+ |.+|+.
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~-----~~l~~~~~~I~~~PTl~lf~~g~~ 96 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWP-----QGKCRKQKHFFYFPVIHLYYRSRG 96 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCC-----hHHHHHhcCCcccCEEEEEECCcc
Confidence 3555666 9999999999999999886543 67889998875 4466 58999999996 557654
No 31
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.59 E-value=3.2e-15 Score=89.96 Aligned_cols=83 Identities=18% Similarity=0.287 Sum_probs=58.9
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHH-------HHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EEC---Ceeec
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELL-------KQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FIG---GKHIG 92 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~~---g~~~~ 92 (121)
+++++++ ||++||++|+.+.+.+ +.+...+.++.+|.+.+.. ....+.+.+++.++||+ |++ |+.+.
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-~~~~~~~~~~i~~~Pti~~~~~~~g~~~~ 88 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDP-EITALLKRFGVFGPPTYLFYGPGGEPEPL 88 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCH-HHHHHHHHcCCCCCCEEEEECCCCCCCCc
Confidence 4566676 9999999999998765 2233368888888765422 23578899999999996 443 55554
Q ss_pred ChHHHHHHHhCCCcHHHHH
Q 033336 93 GCDTVVEKHQGGKLVPLLR 111 (121)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~ 111 (121)
++.|+.+.++|.++|+
T Consensus 89 ---~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 89 ---RLPGFLTADEFLEALE 104 (104)
T ss_pred ---ccccccCHHHHHHHhC
Confidence 5667777777776653
No 32
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.59 E-value=1.1e-15 Score=97.08 Aligned_cols=98 Identities=16% Similarity=0.297 Sum_probs=65.0
Q ss_pred hHHHHHHHHHHHhhh-CCCCEEE-EeeCCCcchHHHHHHHHHhCC----CceEEEecCCCCcHHHHHHHHHHhCCCCccE
Q 033336 10 KEELEIALNKAKEIV-SSNPVVV-FSKTYCGYCTTVKELLKQLGT----SFKVVELDIESDGSKIQAALAEWTGQRTVPN 83 (121)
Q Consensus 10 ~~~~~~~~~~~~~~~-~~~~v~i-f~a~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~ 83 (121)
++.+......++.++ .+++++| ||++||++|+.+.|.+.++.. .+.++.++.+... ...+.+.|++.++|+
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~---~~~~~~~~~V~~iPt 79 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK---WLPEIDRYRVDGIPH 79 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc---cHHHHHHcCCCCCCE
Confidence 344444433344443 3556666 999999999999999976533 3567777766431 135788999999998
Q ss_pred E-EE--CCeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 84 V-FI--GGKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 84 i-~~--~g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
+ |+ +|+.+. ++.|..+.++|.++|+..
T Consensus 80 ~v~~~~~G~~v~---~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 80 FVFLDREGNEEG---QSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred EEEECCCCCEEE---EEeCCCCHHHHHHHHHHH
Confidence 5 55 477665 455666666677776654
No 33
>PRK10996 thioredoxin 2; Provisional
Probab=99.58 E-value=3.2e-15 Score=94.60 Aligned_cols=81 Identities=20% Similarity=0.458 Sum_probs=63.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhC----CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLG----TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTV 97 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~ 97 (121)
+++.+++ ||++||++|+.+.|.|.++. ..+.++++|.+.. +.+.+.+++.++|++ |.+|+.+. .+
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-----~~l~~~~~V~~~Ptlii~~~G~~v~---~~ 122 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-----RELSARFRIRSIPTIMIFKNGQVVD---ML 122 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-----HHHHHhcCCCccCEEEEEECCEEEE---EE
Confidence 3556666 99999999999999887643 3478889998875 578999999999995 45788775 56
Q ss_pred HHHHhCCCcHHHHHhc
Q 033336 98 VEKHQGGKLVPLLRDA 113 (121)
Q Consensus 98 ~~~~~~~~l~~~l~~~ 113 (121)
.|..+.++|.++|+++
T Consensus 123 ~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 123 NGAVPKAPFDSWLNEA 138 (139)
T ss_pred cCCCCHHHHHHHHHHh
Confidence 6667777888888764
No 34
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.57 E-value=1.6e-15 Score=90.82 Aligned_cols=61 Identities=16% Similarity=0.361 Sum_probs=48.6
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeee
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHI 91 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~ 91 (121)
++.+++ ||++||++|+.+.|.++++... +.+..||.+.. +.+++.+++.++||+ |.+|+..
T Consensus 18 ~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~ 85 (101)
T cd03003 18 GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-----RMLCRSQGVNSYPSLYVFPSGMNP 85 (101)
T ss_pred CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-----HHHHHHcCCCccCEEEEEcCCCCc
Confidence 455666 9999999999999999776543 67888998875 568899999999996 4467644
No 35
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.57 E-value=2.6e-14 Score=83.22 Aligned_cols=72 Identities=35% Similarity=0.660 Sum_probs=54.8
Q ss_pred CEEEEeeCCCcchHHHHHHHHHh-----CCCceEEEecCCCCcHHHHHHHHHHhC--CCCccEEEECCeeecChHHHHHH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQL-----GTSFKVVELDIESDGSKIQAALAEWTG--QRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~--v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
.|++|+.+|||+|.++++.|+++ +..|..++++.+. . ..+++...++ +.++|+||++|++++|++++..+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~-~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--I-SKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--H-HHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 47789999999999999999994 4455655555432 1 1345666666 48999999999999999888776
Q ss_pred Hh
Q 033336 101 HQ 102 (121)
Q Consensus 101 ~~ 102 (121)
..
T Consensus 79 ~~ 80 (85)
T PRK11200 79 VK 80 (85)
T ss_pred HH
Confidence 53
No 36
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.57 E-value=5.2e-14 Score=82.19 Aligned_cols=74 Identities=34% Similarity=0.702 Sum_probs=56.0
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCC--CCccEEEECCeeecChHHHHHHHhC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQ--RTVPNVFIGGKHIGGCDTVVEKHQG 103 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v--~~~P~i~~~g~~~~~~~~~~~~~~~ 103 (121)
|++|+.+|||+|.+++..|+++..+ +.+..+|.+... ....++...+|. .++|+||++|+++||++++..+...
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~-~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEG-ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCH-HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHh
Confidence 5679999999999999999998653 344445544322 123457677775 7999999999999999999887543
No 37
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.57 E-value=1.2e-15 Score=91.97 Aligned_cols=83 Identities=18% Similarity=0.373 Sum_probs=58.4
Q ss_pred hhCCCCEEE-EeeCCCcchHHHHHHHHHhCC-------CceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EECCeeecC
Q 033336 23 IVSSNPVVV-FSKTYCGYCTTVKELLKQLGT-------SFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FIGGKHIGG 93 (121)
Q Consensus 23 ~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~~g~~~~~ 93 (121)
+.+++.+++ ||++||++|+++.|.++++.. .+.+..+|.+.. ..+++.+++.++||+ +++|....
T Consensus 12 ~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~I~~~Pt~~l~~~~~~~- 85 (104)
T cd03000 12 VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----SSIASEFGVRGYPTIKLLKGDLAY- 85 (104)
T ss_pred hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----HhHHhhcCCccccEEEEEcCCCce-
Confidence 345667777 999999999999998866433 256677777654 568889999999995 44543332
Q ss_pred hHHHHHHHhCCCcHHHHHhc
Q 033336 94 CDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~ 113 (121)
.+.|..+.++|.+++++.
T Consensus 86 --~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 86 --NYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --eecCCCCHHHHHHHHHhh
Confidence 345555666777776653
No 38
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.57 E-value=1.5e-14 Score=87.79 Aligned_cols=62 Identities=15% Similarity=0.418 Sum_probs=52.8
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeee
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHI 91 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~ 91 (121)
+++.|++ |+|+|||+|+.+.|.|+++..+ +.+.+||.+.. +++++.|++...||+ |.+|+|+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-----~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-----PVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-----HHHHHhcCceeCcEEEEEECCcEE
Confidence 4667777 9999999999999999988743 67899999875 679999999999984 6688877
No 39
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.57 E-value=1.8e-14 Score=80.14 Aligned_cols=60 Identities=23% Similarity=0.378 Sum_probs=48.9
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCC---CceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeec
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIG 92 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~ 92 (121)
.|.+|+++|||+|+.+++.++++.. .+.+..+|.+.. +++.+.+|+.++|+++++|+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~-----~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEF-----PDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccC-----HhHHHHcCCcccCEEEECCEEEE
Confidence 3677999999999999999987632 367777777654 45888999999999999998764
No 40
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.57 E-value=9.7e-16 Score=91.48 Aligned_cols=80 Identities=25% Similarity=0.538 Sum_probs=63.2
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC----CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG----TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVV 98 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~ 98 (121)
++++++ ||++||++|+.+.|.|.++. .++.+..+|.+.. ..+++.+++.++|++ +.+|+... ++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~~Pt~~~~~~g~~~~---~~~ 88 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-----KELCKKYGVKSVPTIIFFKNGKEVK---RYN 88 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-----HHHHHHTTCSSSSEEEEEETTEEEE---EEE
T ss_pred CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-----chhhhccCCCCCCEEEEEECCcEEE---EEE
Confidence 466666 99999999999999996643 3688999999875 679999999999996 55787765 555
Q ss_pred HHHhCCCcHHHHHhc
Q 033336 99 EKHQGGKLVPLLRDA 113 (121)
Q Consensus 99 ~~~~~~~l~~~l~~~ 113 (121)
+..+.++|.++|+++
T Consensus 89 g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 89 GPRNAESLIEFIEKH 103 (103)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcC
Confidence 566677788877764
No 41
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.57 E-value=6e-15 Score=84.96 Aligned_cols=75 Identities=20% Similarity=0.438 Sum_probs=56.3
Q ss_pred EEEEeeCCCcchHHHHHHHHHh----CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHhCC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQL----GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGG 104 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~ 104 (121)
|.+||++||++|+.+.+.++++ +..+.+..+|.+.. +++.+.+|+.++|+++++|+. .+.|..+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~vPt~~~~g~~-----~~~G~~~~~ 72 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMEN-----PQKAMEYGIMAVPAIVINGDV-----EFIGAPTKE 72 (82)
T ss_pred EEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccC-----HHHHHHcCCccCCEEEECCEE-----EEecCCCHH
Confidence 5679999999999999999764 33477888888764 457788999999999888863 233444556
Q ss_pred CcHHHHHhc
Q 033336 105 KLVPLLRDA 113 (121)
Q Consensus 105 ~l~~~l~~~ 113 (121)
+|.++|+++
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 666666653
No 42
>PHA02125 thioredoxin-like protein
Probab=99.56 E-value=1.1e-14 Score=82.90 Aligned_cols=56 Identities=20% Similarity=0.526 Sum_probs=46.2
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeec
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIG 92 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~ 92 (121)
|++||++|||+|+.+.|.|++. .+.++++|.+.. .+++..|++.++||++ +|+.+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~-----~~l~~~~~v~~~PT~~-~g~~~~ 57 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG-----VELTAKHHIRSLPTLV-NTSTLD 57 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC-----HHHHHHcCCceeCeEE-CCEEEE
Confidence 5669999999999999999875 467788887764 5789999999999987 665543
No 43
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.56 E-value=9.1e-14 Score=77.58 Aligned_cols=70 Identities=40% Similarity=0.750 Sum_probs=58.9
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
+|++|+++|||+|+.++..|++.+.+|..++++.+. +..+.+.+..|..++|+++++|+.++|++++...
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~---~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDG---ELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCH---HHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 467899999999999999999999888777766543 2456788888999999999999999998777654
No 44
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.1e-13 Score=81.09 Aligned_cols=97 Identities=32% Similarity=0.654 Sum_probs=82.4
Q ss_pred HHHHHHHhhhCCCCEEEEee-----CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCe
Q 033336 15 IALNKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGK 89 (121)
Q Consensus 15 ~~~~~~~~~~~~~~v~if~a-----~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~ 89 (121)
+..+.++..+++++|++|.. |.||++.++..+|..++. ..+..+|+-.+ +++++.+.+..+.+++|.+|++|+
T Consensus 3 ~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~-v~~~~vnVL~d-~eiR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 3 EILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGV-VDFAYVDVLQD-PEIRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred hHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCC-cceeEEeeccC-HHHHhccHhhcCCCCCceeeECCE
Confidence 45667777888999999987 889999999999999995 44444554444 678888999888899999999999
Q ss_pred eecChHHHHHHHhCCCcHHHHHhc
Q 033336 90 HIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
.+||+|.+......++|+++|+.+
T Consensus 81 fvGG~DIv~Em~q~GELq~~l~~~ 104 (105)
T COG0278 81 FVGGCDIVREMYQSGELQTLLKEA 104 (105)
T ss_pred EeccHHHHHHHHHcchHHHHHHhc
Confidence 999999999999999999999875
No 45
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.56 E-value=3.3e-14 Score=87.00 Aligned_cols=63 Identities=27% Similarity=0.384 Sum_probs=52.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 92 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~ 92 (121)
++..+++ ||++||++|+.+.|.|+++..+ +.+++||.+.. ..+.+.+++.++||+ |.+|+.++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~-----~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKA-----PFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccC-----HHHHHHCCCccCCEEEEEECCEEEE
Confidence 4567777 9999999999999999886644 68999999885 579999999999995 66887665
No 46
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.55 E-value=3e-14 Score=77.70 Aligned_cols=60 Identities=43% Similarity=0.801 Sum_probs=53.2
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeee
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHI 91 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~ 91 (121)
|++|+.+|||+|++++..|++.+.+|++++++.++ +.++++.+..|..++|++|++|+++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE---EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH---HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch---hHHHHHHHHcCCCccCEEEECCEEC
Confidence 56799999999999999999999999999988874 4567788888999999999999875
No 47
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.55 E-value=4.5e-15 Score=88.82 Aligned_cols=78 Identities=12% Similarity=0.348 Sum_probs=55.6
Q ss_pred hCCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCCCcHHHHHHHHHHhCCCCccEEE--ECCeeecChH
Q 033336 24 VSSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIESDGSKIQAALAEWTGQRTVPNVF--IGGKHIGGCD 95 (121)
Q Consensus 24 ~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~--~~g~~~~~~~ 95 (121)
+++. +++ ||++||++|+.+.|.++++.. .+.+..+|.+.. ..+++.+++.++||++ .+|+. .
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~-~--- 84 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-----PGLSGRFFVTALPTIYHAKDGVF-R--- 84 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-----HhHHHHcCCcccCEEEEeCCCCE-E---
Confidence 3444 455 999999999999999987643 367788888764 5688899999999963 35653 2
Q ss_pred HHHHHHhCCCcHHHHH
Q 033336 96 TVVEKHQGGKLVPLLR 111 (121)
Q Consensus 96 ~~~~~~~~~~l~~~l~ 111 (121)
.+.|..+.++|..+++
T Consensus 85 ~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 85 RYQGPRDKEDLISFIE 100 (101)
T ss_pred EecCCCCHHHHHHHHh
Confidence 3455555556666554
No 48
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.54 E-value=3.1e-15 Score=89.97 Aligned_cols=58 Identities=24% Similarity=0.510 Sum_probs=46.6
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECC
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGG 88 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g 88 (121)
++++++ ||++||++|+.+.|.++++..+ +.+..+|.+.. ..+++.++++++||+ |.+|
T Consensus 19 ~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 19 KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-----ESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-----HHHHHHcCCCcccEEEEEcCC
Confidence 445666 9999999999999999776543 67888998874 568899999999996 3455
No 49
>PRK09381 trxA thioredoxin; Provisional
Probab=99.54 E-value=1.1e-14 Score=88.21 Aligned_cols=80 Identities=25% Similarity=0.512 Sum_probs=60.6
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC----CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT----SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVV 98 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~ 98 (121)
++++++ ||++|||+|+.+.|.++++.. .+.+..+|.+.. ..+.+.++++++|++ |.+|+.+. +..
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~G~~~~---~~~ 92 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQN-----PGTAPKYGIRGIPTLLLFKNGEVAA---TKV 92 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCC-----hhHHHhCCCCcCCEEEEEeCCeEEE---Eec
Confidence 556777 999999999999999976433 367888888775 467888999999996 44787765 445
Q ss_pred HHHhCCCcHHHHHhc
Q 033336 99 EKHQGGKLVPLLRDA 113 (121)
Q Consensus 99 ~~~~~~~l~~~l~~~ 113 (121)
|..+.++|..+|+.+
T Consensus 93 G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 93 GALSKGQLKEFLDAN 107 (109)
T ss_pred CCCCHHHHHHHHHHh
Confidence 555566777777665
No 50
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.52 E-value=7e-15 Score=87.83 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=52.8
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHh----CC---CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQL----GT---SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCD 95 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~----~~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~ 95 (121)
++++++ ||++||++|+.+.|.+.++ .. .+.+..+|.+.. ..+++.+++.++|++ |.+|+.+.
T Consensus 16 ~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~~--- 87 (102)
T cd03005 16 EGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQH-----RELCSEFQVRGYPTLLLFKDGEKVD--- 87 (102)
T ss_pred cCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCC-----hhhHhhcCCCcCCEEEEEeCCCeee---
Confidence 445766 9999999999999988654 22 477888888764 468889999999995 44676443
Q ss_pred HHHHHHhCCCcHH
Q 033336 96 TVVEKHQGGKLVP 108 (121)
Q Consensus 96 ~~~~~~~~~~l~~ 108 (121)
++.|..+.++|.+
T Consensus 88 ~~~G~~~~~~l~~ 100 (102)
T cd03005 88 KYKGTRDLDSLKE 100 (102)
T ss_pred EeeCCCCHHHHHh
Confidence 3444444444433
No 51
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.51 E-value=2.4e-14 Score=88.87 Aligned_cols=86 Identities=26% Similarity=0.433 Sum_probs=59.5
Q ss_pred CC-CCEEE-EeeCCCcchHHHHHHHH-------HhCCCceEEEecCCCCcHH--------HHHHHHHHhCCCCccEE-EE
Q 033336 25 SS-NPVVV-FSKTYCGYCTTVKELLK-------QLGTSFKVVELDIESDGSK--------IQAALAEWTGQRTVPNV-FI 86 (121)
Q Consensus 25 ~~-~~v~i-f~a~~C~~C~~~~~~l~-------~~~~~~~~~~v~~~~~~~~--------~~~~~~~~~~v~~~P~i-~~ 86 (121)
++ +++++ ||++||++|+++.+.+. .+...+.++.+|.+..... -...+...|++.++||+ |+
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~~~~ 91 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPTVIFL 91 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccEEEEE
Confidence 35 57777 99999999999987652 2334577888887653100 02568889999999995 55
Q ss_pred C---CeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 87 G---GKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 87 ~---g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
+ |+.+. ++.|..+.+++..+|+..
T Consensus 92 ~~~gg~~~~---~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 92 DPEGGKEIA---RLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred cCCCCceeE---EecCCCCHHHHHHHHHHH
Confidence 4 35443 566666777788877765
No 52
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.51 E-value=1.3e-14 Score=89.90 Aligned_cols=82 Identities=16% Similarity=0.323 Sum_probs=50.9
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCc-------HHHHHHHHHHhC----CCCccEE--EECC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDG-------SKIQAALAEWTG----QRTVPNV--FIGG 88 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~-------~~~~~~~~~~~~----v~~~P~i--~~~g 88 (121)
++..+++ |+++|||+|+.+.|.|+++..+ ..++.+|.+.+. .++ .++.+.++ +.++||+ |.+|
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~-~~~~~~~~i~~~i~~~PT~v~~k~G 100 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDL-TAFRSRFGIPTSFMGTPTFVHITDG 100 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHH-HHHHHHcCCcccCCCCCEEEEEeCC
Confidence 4555555 9999999999999999887643 445555554321 122 24556655 5569996 5689
Q ss_pred eeecChHHHHH-HHhCCCcHHHH
Q 033336 89 KHIGGCDTVVE-KHQGGKLVPLL 110 (121)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~l~~~l 110 (121)
+.++ .+.| ..+.++|++++
T Consensus 101 k~v~---~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 101 KQVS---VRCGSSTTAQELQDIA 120 (122)
T ss_pred eEEE---EEeCCCCCHHHHHHHh
Confidence 8776 3334 22344454443
No 53
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.51 E-value=7.8e-14 Score=78.32 Aligned_cols=63 Identities=32% Similarity=0.582 Sum_probs=50.0
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecCh
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 94 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~ 94 (121)
+.+|+++|||+|+++++.|++.+.+|..++++.+ .+..+++.+.+|+.++|+++++|+.+.|.
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~---~~~~~~~~~~~~~~~vP~~~~~~~~~~g~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD---SAAREEVLKVLGQRGVPVIVIGHKIIVGF 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC---HHHHHHHHHHhCCCcccEEEECCEEEeeC
Confidence 6779999999999999999998777766655543 23345677889999999999998877654
No 54
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.51 E-value=1.6e-14 Score=87.53 Aligned_cols=59 Identities=15% Similarity=0.386 Sum_probs=46.9
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC----------CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCe
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT----------SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGK 89 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~----------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~ 89 (121)
+..+++ ||+|||++|+++.|.++++.. .+.+..+|.+.+ ..+++.+|++++||+ |.+|+
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----~~l~~~~~v~~~Ptl~~~~~g~ 89 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----SDIADRYRINKYPTLKLFRNGM 89 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----HHHHHhCCCCcCCEEEEEeCCc
Confidence 445666 999999999999999975432 367888988875 568999999999996 45676
No 55
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.51 E-value=1.4e-14 Score=89.34 Aligned_cols=77 Identities=18% Similarity=0.187 Sum_probs=59.7
Q ss_pred CEEE-EeeCCCcc--hH--HHHHHHHHh------CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecCh
Q 033336 28 PVVV-FSKTYCGY--CT--TVKELLKQL------GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGC 94 (121)
Q Consensus 28 ~v~i-f~a~~C~~--C~--~~~~~l~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~ 94 (121)
.+++ ||++||++ |+ .+.|.+.+. ...+.+++||.+.+ .+++++||++++||+ |.+|+.+
T Consensus 29 ~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~-----~~La~~~~I~~iPTl~lfk~G~~v--- 100 (120)
T cd03065 29 LCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD-----AKVAKKLGLDEEDSIYVFKDDEVI--- 100 (120)
T ss_pred eEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC-----HHHHHHcCCccccEEEEEECCEEE---
Confidence 4555 88888876 99 777777553 33479999999986 679999999999995 6689865
Q ss_pred HHHHHHHhCCCcHHHHHhc
Q 033336 95 DTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~ 113 (121)
.+.|..+.+.|.++|++.
T Consensus 101 -~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 101 -EYDGEFAADTLVEFLLDL 118 (120)
T ss_pred -EeeCCCCHHHHHHHHHHH
Confidence 366777888888888753
No 56
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.50 E-value=1.8e-14 Score=87.46 Aligned_cols=71 Identities=18% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCCEEE-EeeCC--CcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHH
Q 033336 26 SNPVVV-FSKTY--CGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDT 96 (121)
Q Consensus 26 ~~~v~i-f~a~~--C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~ 96 (121)
+.++++ ||++| ||.|..+.|.|+++..+ +.++++|.+.. ++++..|+|+++||+ |.+|+.++ .
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-----~~la~~f~V~sIPTli~fkdGk~v~---~ 98 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-----QALAARFGVLRTPALLFFRDGRYVG---V 98 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-----HHHHHHcCCCcCCEEEEEECCEEEE---E
Confidence 456666 99997 99999999999887654 56889999886 689999999999995 56898776 4
Q ss_pred HHHHHhCC
Q 033336 97 VVEKHQGG 104 (121)
Q Consensus 97 ~~~~~~~~ 104 (121)
+.|..+.+
T Consensus 99 ~~G~~~~~ 106 (111)
T cd02965 99 LAGIRDWD 106 (111)
T ss_pred EeCccCHH
Confidence 44444333
No 57
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.50 E-value=1.5e-13 Score=84.04 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=49.4
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 92 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~ 92 (121)
.++++ ||+|||++|+.+.|.++++..+ +.+++||.+. . .+++.+++.++||+ |.+|+.+.
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~-----~-~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK-----A-FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh-----h-HHHHhcCCCcCCEEEEEECCEEEE
Confidence 56766 9999999999999999887654 5778888875 2 68899999999995 66887765
No 58
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.49 E-value=1.6e-14 Score=86.01 Aligned_cols=77 Identities=23% Similarity=0.453 Sum_probs=58.1
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC----CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG----TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVV 98 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~ 98 (121)
++++++ ||++||+.|+.+.|.++++. ..+.+..+|.+.. +++...+++.++|++ +.+|+.+. .+.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~-----~~l~~~~~v~~vPt~~i~~~g~~v~---~~~ 84 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDED-----QEIAEAAGIMGTPTVQFFKDKELVK---EIS 84 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCC-----HHHHHHCCCeeccEEEEEECCeEEE---EEe
Confidence 455665 99999999999999887643 3477888888764 568899999999995 44787765 556
Q ss_pred HHHhCCCcHHHH
Q 033336 99 EKHQGGKLVPLL 110 (121)
Q Consensus 99 ~~~~~~~l~~~l 110 (121)
+..+.++|.++|
T Consensus 85 g~~~~~~~~~~l 96 (97)
T cd02949 85 GVKMKSEYREFI 96 (97)
T ss_pred CCccHHHHHHhh
Confidence 666666666655
No 59
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.2e-14 Score=96.79 Aligned_cols=93 Identities=20% Similarity=0.403 Sum_probs=67.9
Q ss_pred ChHHHHHHHHHHHhhhCCCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE
Q 033336 9 SKEELEIALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV 84 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i 84 (121)
++.+++..+.... .+-+++ |+|+|||+|++..|+|..+..+ ..+.+||++.+ ...+..+||...||+
T Consensus 8 ~d~df~~~ls~ag----~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c-----~~taa~~gV~amPTF 78 (288)
T KOG0908|consen 8 SDSDFQRELSAAG----GKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDEC-----RGTAATNGVNAMPTF 78 (288)
T ss_pred CcHHHHHhhhccC----ceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHh-----hchhhhcCcccCceE
Confidence 4556555544331 334566 9999999999999999998877 48999999886 568889999999995
Q ss_pred --EECCeeecChHHHHHHHhCCCcHHHHHhcC
Q 033336 85 --FIGGKHIGGCDTVVEKHQGGKLVPLLRDAG 114 (121)
Q Consensus 85 --~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~ 114 (121)
|.||..+. .+.| .+..-|++.++.+.
T Consensus 79 iff~ng~kid---~~qG-Ad~~gLe~kv~~~~ 106 (288)
T KOG0908|consen 79 IFFRNGVKID---QIQG-ADASGLEEKVAKYA 106 (288)
T ss_pred EEEecCeEee---eecC-CCHHHHHHHHHHHh
Confidence 66898774 2333 34555666666653
No 60
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.46 E-value=1.6e-13 Score=89.89 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=58.2
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec---ChHHH
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG---GCDTV 97 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~---~~~~~ 97 (121)
..|++ ||++||++|+.+.|.|+++..+ +.+++||.+.. .++..|++.++||+ |.+|+.+. |..+.
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~------~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~ 157 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT------GASDEFDTDALPALLVYKGGELIGNFVRVTED 157 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch------hhHHhCCCCCCCEEEEEECCEEEEEEechHHh
Confidence 36777 9999999999999999887654 68899998752 58889999999995 66887664 33332
Q ss_pred HH-HHhCCCcHHHHHhc
Q 033336 98 VE-KHQGGKLVPLLRDA 113 (121)
Q Consensus 98 ~~-~~~~~~l~~~l~~~ 113 (121)
.+ ..+.+.|+.+|...
T Consensus 158 ~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 158 LGEDFDAEDLESFLVEY 174 (175)
T ss_pred cCCCCCHHHHHHHHHhc
Confidence 22 23444555555543
No 61
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.46 E-value=4.5e-13 Score=98.02 Aligned_cols=85 Identities=26% Similarity=0.545 Sum_probs=69.1
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHH-----HHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALA-----EWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
.|+||..+|||+|.+++..|++.+.+|..++++.+....+...++. ...|.+++|+||++|+++||++++.. .
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~--~ 80 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA--R 80 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--H
Confidence 5888999999999999999999999999999985543323222322 23588999999999999999999876 7
Q ss_pred CCCcHHHHHhcC
Q 033336 103 GGKLVPLLRDAG 114 (121)
Q Consensus 103 ~~~l~~~l~~~~ 114 (121)
.++|..+++.-+
T Consensus 81 ~g~l~~~~~~~~ 92 (410)
T PRK12759 81 AGEVIARVKGSS 92 (410)
T ss_pred hCCHHHHhcCCc
Confidence 899999888754
No 62
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.45 E-value=3.7e-13 Score=86.26 Aligned_cols=62 Identities=26% Similarity=0.415 Sum_probs=49.6
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCCCcHHHHHHHHHHhCCCC------ccEE--EECCeee
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIESDGSKIQAALAEWTGQRT------VPNV--FIGGKHI 91 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~v~~------~P~i--~~~g~~~ 91 (121)
+..+++ ||++||++|+.+.|.++++.. .+.++.||.+.. +.+++.+++.+ +||+ |.+|+.+
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-----~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v 121 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-----PNVAEKFRVSTSPLSKQLPTIILFQGGKEV 121 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-----HHHHHHcCceecCCcCCCCEEEEEECCEEE
Confidence 345666 999999999999999977643 378899998875 56888889887 9995 6688877
Q ss_pred c
Q 033336 92 G 92 (121)
Q Consensus 92 ~ 92 (121)
.
T Consensus 122 ~ 122 (152)
T cd02962 122 A 122 (152)
T ss_pred E
Confidence 5
No 63
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.45 E-value=1.6e-13 Score=92.89 Aligned_cols=79 Identities=22% Similarity=0.339 Sum_probs=56.0
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVV 98 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~ 98 (121)
+.++++ ||+|||++|+.+.|.++++..+ +.+.++|.+.+ ..+++.|++.++||+ |.+|+.+. ...
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-----~~l~~~~~I~~~PTl~~f~~G~~v~---~~~ 123 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-----LNLAKRFAIKGYPTLLLFDKGKMYQ---YEG 123 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-----HHHHHHcCCCcCCEEEEEECCEEEE---eeC
Confidence 356666 9999999999999999776433 56778887764 568899999999995 45777653 222
Q ss_pred HHHhCCCcHHHHHh
Q 033336 99 EKHQGGKLVPLLRD 112 (121)
Q Consensus 99 ~~~~~~~l~~~l~~ 112 (121)
+..+.++|.+++..
T Consensus 124 G~~s~e~L~~fi~~ 137 (224)
T PTZ00443 124 GDRSTEKLAAFALG 137 (224)
T ss_pred CCCCHHHHHHHHHH
Confidence 33444555555443
No 64
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.44 E-value=5.2e-13 Score=79.08 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=49.3
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC----CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT----SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 92 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~ 92 (121)
++.+++ ||++||++|+.+.+.|+++.. .+.++.+|.+.. .++...|++.++||+ |.+|+.+.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g~~~~ 82 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-----PEISEKFEITAVPTFVFFRNGTIVD 82 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-----HHHHHhcCCccccEEEEEECCEEEE
Confidence 356666 999999999999999977543 478888988764 568899999999995 45777654
No 65
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.44 E-value=2.9e-13 Score=83.35 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=53.8
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHh------CCCceEEEecCCCCcHHHHHHHHHHhCCCC--ccEE-EE--CCeeec
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQL------GTSFKVVELDIESDGSKIQAALAEWTGQRT--VPNV-FI--GGKHIG 92 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~--~P~i-~~--~g~~~~ 92 (121)
+++++++ |||+||++|+.+.|.+.+. ...|..++++.+.. .....+++.+ +||+ |+ +|+.+.
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~------~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE------PKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC------chhhhcccCCCccceEEEECCCCCCch
Confidence 4667888 9999999999999988663 22355566665432 2345677765 9996 55 577766
Q ss_pred ChHHHHHHHhCCCcHHHHHh
Q 033336 93 GCDTVVEKHQGGKLVPLLRD 112 (121)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~ 112 (121)
......+..+...+...|+.
T Consensus 92 ~~~~~~~~~~~~~f~~~~~~ 111 (117)
T cd02959 92 EIINKKGNPNYKYFYSSAAQ 111 (117)
T ss_pred hhccCCCCccccccCCCHHH
Confidence 44445555555555555543
No 66
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.43 E-value=9.8e-14 Score=96.36 Aligned_cols=93 Identities=20% Similarity=0.328 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhhhCCCCEEE-EeeCCCcchHHHHHHHHHhCCC-------ceEEEecCCCCcHHHHHHHHHHhCCCCccE
Q 033336 12 ELEIALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGTS-------FKVVELDIESDGSKIQAALAEWTGQRTVPN 83 (121)
Q Consensus 12 ~~~~~~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~ 83 (121)
...+..+.+.+.....--++ ||||||++|++..|+|.+.+-+ +.+.+++.... +.++.++|++++||
T Consensus 29 ~VeDLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-----~aiAnefgiqGYPT 103 (468)
T KOG4277|consen 29 AVEDLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-----PAIANEFGIQGYPT 103 (468)
T ss_pred hhhhhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-----hhhHhhhccCCCce
Confidence 33344444444434444456 9999999999999999887654 68888888775 67999999999999
Q ss_pred E-EECCeeecChHHHHHHHhCCCcHHHHHh
Q 033336 84 V-FIGGKHIGGCDTVVEKHQGGKLVPLLRD 112 (121)
Q Consensus 84 i-~~~g~~~~~~~~~~~~~~~~~l~~~l~~ 112 (121)
| |+.|.+.- ++.|.+..+.+.+.-..
T Consensus 104 Ik~~kgd~a~---dYRG~R~Kd~iieFAhR 130 (468)
T KOG4277|consen 104 IKFFKGDHAI---DYRGGREKDAIIEFAHR 130 (468)
T ss_pred EEEecCCeee---ecCCCccHHHHHHHHHh
Confidence 7 55554443 34444445545444433
No 67
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.43 E-value=2.5e-13 Score=80.60 Aligned_cols=80 Identities=28% Similarity=0.578 Sum_probs=59.6
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC----CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG----TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVV 98 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~ 98 (121)
++.+++ ||++||++|+.+.+.++++. ..+.++.+|.+.. ..+.+.+++..+|++ +.+|+.+. ...
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~P~~~~~~~g~~~~---~~~ 85 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN-----PDIAAKYGIRSIPTLLLFKNGKEVD---RSV 85 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC-----HHHHHHcCCCcCCEEEEEeCCcEee---eec
Confidence 446666 99999999999998887653 3478888888775 568889999999996 33676554 444
Q ss_pred HHHhCCCcHHHHHhc
Q 033336 99 EKHQGGKLVPLLRDA 113 (121)
Q Consensus 99 ~~~~~~~l~~~l~~~ 113 (121)
|..+.+++.++|+++
T Consensus 86 g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 86 GALPKAALKQLINKN 100 (101)
T ss_pred CCCCHHHHHHHHHhh
Confidence 555667777777654
No 68
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.42 E-value=1.1e-13 Score=83.73 Aligned_cols=61 Identities=23% Similarity=0.439 Sum_probs=45.4
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCe
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGK 89 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~ 89 (121)
+.++++ ||++||++|+.+.|.+.++... +.++.+|.+.+. ...+++.+++.++|++ |.+|+
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~---~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK---NKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc---cHHHHHHcCCCcCCEEEEEeCCC
Confidence 444666 9999999999999988776433 567777776521 2568889999999996 33454
No 69
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.41 E-value=5.3e-13 Score=76.20 Aligned_cols=53 Identities=19% Similarity=0.276 Sum_probs=41.0
Q ss_pred EEeeCCCcchHHHHHHHHH----hCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeee
Q 033336 31 VFSKTYCGYCTTVKELLKQ----LGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHI 91 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~ 91 (121)
.||++|||+|+.+.|.+++ ++.++.+++++.. + .+..+|+.++|++++||+.+
T Consensus 4 ~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~-------~-~a~~~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 4 QIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM-------N-EILEAGVTATPGVAVDGELV 60 (76)
T ss_pred EEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH-------H-HHHHcCCCcCCEEEECCEEE
Confidence 3899999999999887655 4555788888721 2 35678999999999999765
No 70
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.40 E-value=1.4e-13 Score=82.32 Aligned_cols=63 Identities=24% Similarity=0.413 Sum_probs=45.7
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC------CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeee
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG------TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHI 91 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~ 91 (121)
+..+++ ||++||++|+++.|.+.++. ..+.+..+|.+... ...+...++++++|++ +.+|+.+
T Consensus 17 ~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~~~~~i~~~Pt~~~~~~g~~~ 88 (104)
T cd02997 17 EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE---HDALKEEYNVKGFPTFKYFENGKFV 88 (104)
T ss_pred CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc---cHHHHHhCCCccccEEEEEeCCCee
Confidence 446666 99999999999998886543 23567777776521 2568889999999996 4466644
No 71
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.5e-13 Score=101.26 Aligned_cols=92 Identities=22% Similarity=0.412 Sum_probs=69.1
Q ss_pred HHHHhhhCCCCEE-E-EeeCCCcchHHHHHHHHHh-------CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EE
Q 033336 18 NKAKEIVSSNPVV-V-FSKTYCGYCTTVKELLKQL-------GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FI 86 (121)
Q Consensus 18 ~~~~~~~~~~~v~-i-f~a~~C~~C~~~~~~l~~~-------~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~ 86 (121)
..+...+.+...+ + ||||||++|++..|-+.+. +......+||...+ ..++.+|+++++||+ |.
T Consensus 33 dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-----~~~~~~y~v~gyPTlkiFr 107 (493)
T KOG0190|consen 33 DNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-----SDLASKYEVRGYPTLKIFR 107 (493)
T ss_pred ccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----hhhHhhhcCCCCCeEEEEe
Confidence 3444555566555 5 9999999999998877553 23477889998874 679999999999995 78
Q ss_pred CCeeecChHHHHHHHhCCCcHHHHHhcCCcc
Q 033336 87 GGKHIGGCDTVVEKHQGGKLVPLLRDAGALA 117 (121)
Q Consensus 87 ~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 117 (121)
||+... ++.|.+..+.+..|+++....+
T Consensus 108 nG~~~~---~Y~G~r~adgIv~wl~kq~gPa 135 (493)
T KOG0190|consen 108 NGRSAQ---DYNGPREADGIVKWLKKQSGPA 135 (493)
T ss_pred cCCcce---eccCcccHHHHHHHHHhccCCC
Confidence 998622 5777778888889888775543
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.39 E-value=4.4e-13 Score=90.43 Aligned_cols=74 Identities=18% Similarity=0.270 Sum_probs=52.3
Q ss_pred EEEeeCCCcchHHHHHHHHHhCC---CceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHhCCCc
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKL 106 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l 106 (121)
++||++|||+|+.+.+.++++.. .+.+..+|.+.. +++++.||+.++||++++++.. .+.|..+.++|
T Consensus 138 ~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~-----~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l 208 (215)
T TIGR02187 138 EVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN-----PDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQF 208 (215)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC-----HHHHHHhCCccCCEEEEecCCE----EEECCCCHHHH
Confidence 33999999999999999987653 366677887765 6788999999999986643221 02334445566
Q ss_pred HHHHHh
Q 033336 107 VPLLRD 112 (121)
Q Consensus 107 ~~~l~~ 112 (121)
.++|.+
T Consensus 209 ~~~l~~ 214 (215)
T TIGR02187 209 LEYILS 214 (215)
T ss_pred HHHHHh
Confidence 666554
No 73
>PTZ00051 thioredoxin; Provisional
Probab=99.39 E-value=1.7e-12 Score=77.11 Aligned_cols=62 Identities=21% Similarity=0.495 Sum_probs=48.9
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 92 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~ 92 (121)
++.+++ ||++||++|+.+.+.++++..+ +.++.+|.+.. ..+.+.+++.++|++ +.+|+.+.
T Consensus 18 ~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~~Pt~~~~~~g~~~~ 85 (98)
T PTZ00051 18 NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-----SEVAEKENITSMPTFKVFKNGSVVD 85 (98)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-----HHHHHHCCCceeeEEEEEeCCeEEE
Confidence 455666 9999999999999999876443 67888888764 568899999999995 45776664
No 74
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.38 E-value=2.4e-12 Score=75.59 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=47.8
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCC---CceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeec
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIG 92 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~ 92 (121)
.+.+|+++||++|..+.+.++++.. .+.+..+|.+.. ++++.+||+.++|++++||+.+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~-----~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALF-----QDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhC-----HHHHHHcCCccCCEEEECCEEEE
Confidence 4555999999999999998877643 356666666553 56889999999999999998764
No 75
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.38 E-value=4.7e-13 Score=79.66 Aligned_cols=81 Identities=21% Similarity=0.405 Sum_probs=57.6
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC------CceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EE-CCeeecChH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT------SFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FI-GGKHIGGCD 95 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~-~g~~~~~~~ 95 (121)
+++.+++ ||++||++|+.+.+.+.++.. .+.+..+|.+.. ..+.+.+++.++|++ ++ +|+...
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~i~~~P~~~~~~~~~~~~--- 83 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-----KDLASRFGVSGFPTIKFFPKGKKPV--- 83 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-----HHHHHhCCCCcCCEEEEecCCCcce---
Confidence 4556566 999999999999888866432 367788887764 678899999999996 33 454222
Q ss_pred HHHHHHhCCCcHHHHHhc
Q 033336 96 TVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~ 113 (121)
.+.|..+.++|..+|+++
T Consensus 84 ~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 84 DYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred eecCCCCHHHHHHHHHhc
Confidence 455555666677777664
No 76
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.37 E-value=2e-12 Score=74.64 Aligned_cols=63 Identities=21% Similarity=0.471 Sum_probs=51.7
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecCh
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 94 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~ 94 (121)
+|.+|+.+|||+|.+++..|++.+.+|..++++.++ +...++.. .|..++|++++++..+.|+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~---~~~~~~~~-~g~~~vPvv~i~~~~~~Gf 64 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVP---EAAETLRA-QGFRQLPVVIAGDLSWSGF 64 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHH-cCCCCcCEEEECCEEEecC
Confidence 477899999999999999999999999999888654 22334444 5889999999999888765
No 77
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.37 E-value=1.3e-12 Score=88.18 Aligned_cols=87 Identities=28% Similarity=0.455 Sum_probs=56.6
Q ss_pred HHhhhCCCCEEEEee---CCCcchHHHHHHHHHhCCC-----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCe
Q 033336 20 AKEIVSSNPVVVFSK---TYCGYCTTVKELLKQLGTS-----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGK 89 (121)
Q Consensus 20 ~~~~~~~~~v~if~a---~~C~~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~ 89 (121)
...+.++..+++|++ +|||+|+.+.|.++++... +.++++|.+.. ..+++.|++.++||+ |.+|+
T Consensus 14 ~~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-----~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 14 LKELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-----KEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred HHhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-----HHHHHHcCCCccCEEEEEeCCe
Confidence 333434445556888 9999999999999887544 34666666554 679999999999996 34665
Q ss_pred eecChHHHHHHHhCCCcHHHHHhc
Q 033336 90 HIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
.++ .++.|..+.++|..+|+..
T Consensus 89 ~~~--~~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 89 DGG--IRYTGIPAGYEFAALIEDI 110 (215)
T ss_pred eeE--EEEeecCCHHHHHHHHHHH
Confidence 542 0233333444555555443
No 78
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.37 E-value=1.6e-12 Score=79.57 Aligned_cols=85 Identities=21% Similarity=0.237 Sum_probs=63.0
Q ss_pred CCCEEE-Eee--CCCc---chHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCC--CccEE--EECCe--eecC
Q 033336 26 SNPVVV-FSK--TYCG---YCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQR--TVPNV--FIGGK--HIGG 93 (121)
Q Consensus 26 ~~~v~i-f~a--~~C~---~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~--~~P~i--~~~g~--~~~~ 93 (121)
...+++ ||| |||+ +|+.+.|.+......+.+.+|+.+..++.....++++|||+ ++||| |.+|. ...
T Consensus 18 ~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyPTl~lF~~g~~~~~~- 96 (116)
T cd03007 18 FKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYPVIYLFHGGDFENPV- 96 (116)
T ss_pred CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCCEEEEEeCCCcCCCc-
Confidence 445666 999 9999 99999999988877788999999765554457799999999 99996 55674 211
Q ss_pred hHHHHHH-HhCCCcHHHHHhc
Q 033336 94 CDTVVEK-HQGGKLVPLLRDA 113 (121)
Q Consensus 94 ~~~~~~~-~~~~~l~~~l~~~ 113 (121)
.+.+. ++.+.|.+++++.
T Consensus 97 --~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 97 --PYSGADVTVDALQRFLKGN 115 (116)
T ss_pred --cCCCCcccHHHHHHHHHhc
Confidence 33443 5566677777654
No 79
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.36 E-value=7.3e-13 Score=79.15 Aligned_cols=57 Identities=26% Similarity=0.489 Sum_probs=44.6
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCC----CceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EE-CC
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGT----SFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FI-GG 88 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~-~g 88 (121)
.++++ ||++||++|+.+.|.+.++.. .+.+..+|.+.. ..+.+.++++++|++ ++ +|
T Consensus 19 ~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 19 DVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-----QSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred CcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-----HHHHHHCCCCccCEEEEECCC
Confidence 33666 999999999999998877543 367888888764 568889999999986 34 45
No 80
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.34 E-value=1.1e-12 Score=86.62 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=56.4
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-CceEEEecCCCCcHHHHHH------------------HHHHhCCCCccE-
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-SFKVVELDIESDGSKIQAA------------------LAEWTGQRTVPN- 83 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-~~~~~~v~~~~~~~~~~~~------------------~~~~~~v~~~P~- 83 (121)
.++.+++ ||++|||+|++..|.+.++.. .+.++.|+.+.+..++.+. +...||+.++|+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P~t 146 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPET 146 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCCeE
Confidence 4666777 999999999999999988764 4778888865543333322 233578999995
Q ss_pred EEEC--CeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 84 VFIG--GKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 84 i~~~--g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
++++ |+... .+.|..+.++|.++++..
T Consensus 147 ~vid~~G~i~~---~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 147 FLIDGNGIIRY---RHAGDLNPRVWESEIKPL 175 (185)
T ss_pred EEECCCceEEE---EEecCCCHHHHHHHHHHH
Confidence 5554 55443 344555555555555443
No 81
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.34 E-value=1e-11 Score=75.35 Aligned_cols=56 Identities=14% Similarity=0.450 Sum_probs=42.3
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCCCcHHHHHHHHH-HhCCCCccEE
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIESDGSKIQAALAE-WTGQRTVPNV 84 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~-~~~v~~~P~i 84 (121)
.++++++ ||++||++|+++.|.+.++.. .+.+..||.+... ..++. .+++..+||+
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~----~~~~~~~~~v~~~Pti 82 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ----REFAKEELQLKSFPTI 82 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc----hhhHHhhcCCCcCCEE
Confidence 3567777 999999999999998876542 3778888877521 23554 5899999996
No 82
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.33 E-value=1.3e-12 Score=86.78 Aligned_cols=78 Identities=19% Similarity=0.185 Sum_probs=54.8
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec---ChHHH
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG---GCDTV 97 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~---~~~~~ 97 (121)
..|++ ||++||++|+.+.|.|+++..+ +.|++++.+. ....|++..+||+ |.+|+.+. |...+
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~--------~~~~~~i~~lPTlliyk~G~~v~~ivG~~~~ 174 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ--------CIPNYPDKNLPTILVYRNGDIVKQFIGLLEF 174 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH--------hHhhCCCCCCCEEEEEECCEEEEEEeCchhh
Confidence 35777 9999999999999999888754 6788888863 3578999999995 66887654 33232
Q ss_pred HH-HHhCCCcHHHHHh
Q 033336 98 VE-KHQGGKLVPLLRD 112 (121)
Q Consensus 98 ~~-~~~~~~l~~~l~~ 112 (121)
.| ..+.++|..+|.+
T Consensus 175 gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 175 GGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 22 2234455555544
No 83
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.33 E-value=8.2e-12 Score=70.84 Aligned_cols=62 Identities=26% Similarity=0.632 Sum_probs=46.5
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHH-hCCCCccEEEE-CCeeec
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEW-TGQRTVPNVFI-GGKHIG 92 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~v~~~P~i~~-~g~~~~ 92 (121)
.+.+||++|||+|+++++.|++++.+|..++++.+.. ...++... +++.++|++++ +|..+.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~---~~~~~~~~~~~~~~vP~i~~~~g~~l~ 64 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEG---AADRVVSVNNGNMTVPTVKFADGSFLT 64 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHh---HHHHHHHHhCCCceeCEEEECCCeEec
Confidence 3678999999999999999999999988877665432 22334444 48999999876 555553
No 84
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.32 E-value=7e-12 Score=77.21 Aligned_cols=67 Identities=10% Similarity=0.260 Sum_probs=47.8
Q ss_pred CCCEEE-Eee-------CCCcchHHHHHHHHHhCC----CceEEEecCCCCcH--HHHHHHHHHhCCC-CccEE--EECC
Q 033336 26 SNPVVV-FSK-------TYCGYCTTVKELLKQLGT----SFKVVELDIESDGS--KIQAALAEWTGQR-TVPNV--FIGG 88 (121)
Q Consensus 26 ~~~v~i-f~a-------~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~--~~~~~~~~~~~v~-~~P~i--~~~g 88 (121)
++++++ ||| +|||+|+.+.|.++++.. .+.++.||.+.... .....++..+++. ++||+ +.+|
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 567777 999 999999999998876542 46788888865210 0125688899998 99996 3345
Q ss_pred eeec
Q 033336 89 KHIG 92 (121)
Q Consensus 89 ~~~~ 92 (121)
+.+.
T Consensus 101 ~~l~ 104 (119)
T cd02952 101 QRLV 104 (119)
T ss_pred ceec
Confidence 4443
No 85
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.31 E-value=6.3e-13 Score=80.75 Aligned_cols=82 Identities=24% Similarity=0.524 Sum_probs=50.0
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHH---hC----CCceEEEecCCCCcH---------------HHHHHHHHHhCCCCcc
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQ---LG----TSFKVVELDIESDGS---------------KIQAALAEWTGQRTVP 82 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~---~~----~~~~~~~v~~~~~~~---------------~~~~~~~~~~~v~~~P 82 (121)
++++++ |+++|||+|+.+.+.+.. +. ..+.++.++.+.... ....++...+|+.++|
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtP 84 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTP 84 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccC
Confidence 455555 999999999999887763 22 237778887765321 1235688999999999
Q ss_pred EE-EEC--CeeecChHHHHHHHhCCCcHHHH
Q 033336 83 NV-FIG--GKHIGGCDTVVEKHQGGKLVPLL 110 (121)
Q Consensus 83 ~i-~~~--g~~~~~~~~~~~~~~~~~l~~~l 110 (121)
|+ +++ |+.+. .+.|+.+.++|.++|
T Consensus 85 t~~~~d~~G~~v~---~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 85 TIVFLDKDGKIVY---RIPGYLSPEELLKML 112 (112)
T ss_dssp EEEECTTTSCEEE---EEESS--HHHHHHHH
T ss_pred EEEEEcCCCCEEE---EecCCCCHHHHHhhC
Confidence 97 454 66553 344555556565543
No 86
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.30 E-value=3.1e-11 Score=67.48 Aligned_cols=64 Identities=34% Similarity=0.689 Sum_probs=51.6
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecCh
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGC 94 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~ 94 (121)
++++|+++|||+|.+++..+.+.+.+|..++++.+ .+..+++.+..++.++|+++++|+.+.|.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~---~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED---PEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC---HHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 36779999999999999999999888888777653 23345566666889999999999888765
No 87
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.30 E-value=3.1e-12 Score=74.12 Aligned_cols=77 Identities=34% Similarity=0.651 Sum_probs=54.2
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC---CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVVE 99 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~~ 99 (121)
..++++ ||++||++|+.+.+.+++... .+.+..++.+.. ..+...+++.++|++ +.+|+.+. .+.+
T Consensus 10 ~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~~v~~~P~~~~~~~g~~~~---~~~g 81 (93)
T cd02947 10 AKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDEN-----PELAEEYGVRSIPTFLFFKNGKEVD---RVVG 81 (93)
T ss_pred CCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCC-----hhHHHhcCcccccEEEEEECCEEEE---EEec
Confidence 356666 999999999999999977533 477888888764 568889999999996 34677554 3334
Q ss_pred HHhCCCcHHHH
Q 033336 100 KHQGGKLVPLL 110 (121)
Q Consensus 100 ~~~~~~l~~~l 110 (121)
..+.+.|.++|
T Consensus 82 ~~~~~~l~~~i 92 (93)
T cd02947 82 ADPKEELEEFL 92 (93)
T ss_pred CCCHHHHHHHh
Confidence 33334444443
No 88
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.29 E-value=1.5e-12 Score=77.92 Aligned_cols=54 Identities=22% Similarity=0.497 Sum_probs=43.0
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC------CCceEEEecCCC-CcHHHHHHHHHHhCCCCccEE
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG------TSFKVVELDIES-DGSKIQAALAEWTGQRTVPNV 84 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~------~~~~~~~v~~~~-~~~~~~~~~~~~~~v~~~P~i 84 (121)
++++++ ||++||++|+.+.|.+.++. ..+.+..+|.+. . ..+++.+++.++|++
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~~i~~~P~~ 79 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN-----KDLAKKYGVSGFPTL 79 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc-----hhhHHhCCCCCcCEE
Confidence 335666 99999999999999886643 237788888876 4 568889999999996
No 89
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.29 E-value=1.2e-11 Score=93.78 Aligned_cols=87 Identities=17% Similarity=0.337 Sum_probs=61.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHH------HHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EE--CCeeecCh
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELL------KQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FI--GGKHIGGC 94 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~--~g~~~~~~ 94 (121)
+++++++ ||++||++|+.+.+.. .+...++.++++|.+.+.++ ..++.++|++.++|++ ++ +|+.+. .
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~-~~~l~~~~~v~g~Pt~~~~~~~G~~i~-~ 550 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAE-DVALLKHYNVLGLPTILFFDAQGQEIP-D 550 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChh-hHHHHHHcCCCCCCEEEEECCCCCCcc-c
Confidence 3677888 9999999999987653 22224588888888765333 3568889999999996 55 465531 1
Q ss_pred HHHHHHHhCCCcHHHHHhc
Q 033336 95 DTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~ 113 (121)
.++.+..+.+++.++|++.
T Consensus 551 ~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 551 ARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred ccccCCCCHHHHHHHHHHh
Confidence 2566777778888888765
No 90
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.28 E-value=2.7e-11 Score=68.33 Aligned_cols=62 Identities=26% Similarity=0.511 Sum_probs=49.6
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCe-eecCh
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGK-HIGGC 94 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~-~~~~~ 94 (121)
|.+|+.++||+|++++..|++.+.+|..++++.++ +...++.. .|..++|+++++|+ .++|+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~---~~~~~~~~-~g~~~vP~v~~~g~~~~~G~ 63 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQP---EAIDYVKA-QGFRQVPVIVADGDLSWSGF 63 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCH---HHHHHHHH-cCCcccCEEEECCCcEEecc
Confidence 45799999999999999999999999999888654 22344543 48899999999775 67665
No 91
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.28 E-value=3.1e-11 Score=74.92 Aligned_cols=89 Identities=18% Similarity=0.289 Sum_probs=55.1
Q ss_pred CCCCEEE-EeeCCCcchHHHHH-HH------HHhCCCceEEEecCCCCcHHHHH----HHHHHhCCCCccEE-EE--CCe
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKE-LL------KQLGTSFKVVELDIESDGSKIQA----ALAEWTGQRTVPNV-FI--GGK 89 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~-~l------~~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~v~~~P~i-~~--~g~ 89 (121)
++++|++ |+++||++|+.+.+ ++ ..++..|..+++|.+... ++.. .....+|+.++|++ |+ +|+
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~-~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP-DVDKIYMNAAQAMTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc-HHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 4677888 99999999999964 22 335667999999987643 2222 12235689999985 55 477
Q ss_pred eecChHHHHH--HHhCCCcHHHHHhcC
Q 033336 90 HIGGCDTVVE--KHQGGKLVPLLRDAG 114 (121)
Q Consensus 90 ~~~~~~~~~~--~~~~~~l~~~l~~~~ 114 (121)
.+.+...+-. ..+...+..++++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (124)
T cd02955 93 PFFGGTYFPPEDRYGRPGFKTVLEKIR 119 (124)
T ss_pred EEeeeeecCCCCcCCCcCHHHHHHHHH
Confidence 7643211110 023345666665543
No 92
>PTZ00062 glutaredoxin; Provisional
Probab=99.27 E-value=6.1e-12 Score=84.08 Aligned_cols=53 Identities=6% Similarity=0.099 Sum_probs=43.4
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 92 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~ 92 (121)
+.+++ |||+|||+|+.+.+++.++..+ +.++.||.+ |+|.++|++ |.+|+.++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEECCEEEe
Confidence 44555 9999999999999999888764 788888765 799999995 55888776
No 93
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.27 E-value=3.7e-12 Score=83.29 Aligned_cols=86 Identities=15% Similarity=0.244 Sum_probs=58.3
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC-ceEEEecCCCCcHHHHH------------------HHHHHhCCCCccE-
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS-FKVVELDIESDGSKIQA------------------ALAEWTGQRTVPN- 83 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~-~~~~~v~~~~~~~~~~~------------------~~~~~~~v~~~P~- 83 (121)
+++.+++ ||++|||+|++..|.++++... +.++.|+.+...++... .+.+.|++.++|+
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P~~ 141 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAPET 141 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCCeE
Confidence 4566777 9999999999999999887554 77777776443332221 2345678889995
Q ss_pred EEE--CCeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 84 VFI--GGKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 84 i~~--~g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
+++ +|+.+. ...|..+.++|.++|+.+
T Consensus 142 ~~id~~G~i~~---~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 142 FLVDGNGVILY---RHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred EEEcCCceEEE---EEeccCCHHHHHHHHHHH
Confidence 566 466553 445556667777777654
No 94
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.26 E-value=2.9e-11 Score=76.98 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=48.2
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhC------------CCceEEEecCCCCcHHH--------------------HHH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLG------------TSFKVVELDIESDGSKI--------------------QAA 71 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~------------~~~~~~~v~~~~~~~~~--------------------~~~ 71 (121)
+++.+++ |||+|||+|++..|.|.++. ..+.++.|+.+...+++ ...
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5677777 99999999999999997632 24788888877543321 124
Q ss_pred HHHHhCCCCccEE-EEC--Ceee
Q 033336 72 LAEWTGQRTVPNV-FIG--GKHI 91 (121)
Q Consensus 72 ~~~~~~v~~~P~i-~~~--g~~~ 91 (121)
+...|++.++|+. +++ |+.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv 126 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVL 126 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEE
Confidence 6667889999985 554 5554
No 95
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.25 E-value=2.9e-12 Score=76.56 Aligned_cols=57 Identities=19% Similarity=0.486 Sum_probs=43.4
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCC------CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCe
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGT------SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGK 89 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~ 89 (121)
+.+++ ||++||++|+.+.|.++++.. .+.+..+|.+.. .+...+++.++|++ |.+|+
T Consensus 19 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------~~~~~~~~~~~Pt~~~~~~~~ 84 (104)
T cd02995 19 KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN------DVPSEFVVDGFPTILFFPAGD 84 (104)
T ss_pred CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch------hhhhhccCCCCCEEEEEcCCC
Confidence 56666 999999999999999976543 367788888753 36667788999996 33554
No 96
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.25 E-value=1.2e-11 Score=72.89 Aligned_cols=57 Identities=25% Similarity=0.478 Sum_probs=45.1
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHH----h--CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EEC
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQ----L--GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FIG 87 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~----~--~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~~ 87 (121)
++.+++ ||++||++|+.+.+.+.+ + ...+.+..+|.+.. ..+.+.+++.++|++ +++
T Consensus 15 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~i~~~Pt~~~~~ 79 (101)
T cd02961 15 SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-----NDLCSEYGVRGYPTIKLFP 79 (101)
T ss_pred CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-----HHHHHhCCCCCCCEEEEEc
Confidence 336666 999999999999998865 3 24578888888763 678999999999996 444
No 97
>PTZ00102 disulphide isomerase; Provisional
Probab=99.23 E-value=9.7e-12 Score=92.26 Aligned_cols=81 Identities=20% Similarity=0.399 Sum_probs=59.7
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC-------CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG-------TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCD 95 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~ 95 (121)
+..+++ ||++||++|+++.|.+.+.. .++.+..||.+.+ ..+++.+++.++||+ |.+|+.+
T Consensus 49 ~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~~---- 119 (477)
T PTZ00102 49 NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEE-----MELAQEFGVRGYPTIKFFNKGNPV---- 119 (477)
T ss_pred CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCC-----HHHHHhcCCCcccEEEEEECCceE----
Confidence 445666 99999999999999776532 3478888888775 579999999999996 4466544
Q ss_pred HHHHHHhCCCcHHHHHhcCC
Q 033336 96 TVVEKHQGGKLVPLLRDAGA 115 (121)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~~~ 115 (121)
.+.|..+.+.|.+++++...
T Consensus 120 ~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 120 NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred EecCCCCHHHHHHHHHHhhC
Confidence 34555566677777776643
No 98
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.23 E-value=8.2e-12 Score=91.96 Aligned_cols=81 Identities=19% Similarity=0.409 Sum_probs=58.2
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC-------CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCee-ecCh
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG-------TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKH-IGGC 94 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~-------~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~-~~~~ 94 (121)
++.+++ |||+||++|+++.|.+.++. ..+.++.||.+.. .++++.+++.++||+ |.+|+. +.
T Consensus 18 ~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~~~~-- 90 (462)
T TIGR01130 18 HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----KDLAQKYGVSGYPTLKIFRNGEDSVS-- 90 (462)
T ss_pred CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----HHHHHhCCCccccEEEEEeCCcccee--
Confidence 445566 99999999999999886532 2378889998875 578999999999996 446765 33
Q ss_pred HHHHHHHhCCCcHHHHHhcC
Q 033336 95 DTVVEKHQGGKLVPLLRDAG 114 (121)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~~~ 114 (121)
++.|..+.+.|.+++....
T Consensus 91 -~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 91 -DYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred -EecCCCCHHHHHHHHHHhc
Confidence 3445555566666665553
No 99
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.22 E-value=4.5e-11 Score=73.21 Aligned_cols=55 Identities=24% Similarity=0.462 Sum_probs=41.4
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCCC-------ceEEEecCCCCcHHHHHHHHHHhCCCCccEE
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGTS-------FKVVELDIESDGSKIQAALAEWTGQRTVPNV 84 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~~-------~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i 84 (121)
+.+++ ||++||++|+.+.|.++++... +.+..+|.+... ...+++.++++++||+
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~---~~~~~~~~~i~~~Pt~ 82 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE---NVALCRDFGVTGYPTL 82 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh---hHHHHHhCCCCCCCEE
Confidence 46666 9999999999999998775442 556677754321 2568889999999996
No 100
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.4e-10 Score=76.31 Aligned_cols=92 Identities=26% Similarity=0.615 Sum_probs=80.5
Q ss_pred HHHHhhhCCCCEEEEee-----CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeec
Q 033336 18 NKAKEIVSSNPVVVFSK-----TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIG 92 (121)
Q Consensus 18 ~~~~~~~~~~~v~if~a-----~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~ 92 (121)
+.+..+.+..+|++|.. |.||+.+++..+|++.+.+|...+|-.+ +++++.++...+.+++|++|++|+.+|
T Consensus 130 ~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D---eelRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 130 NRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD---EELRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred HHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC---HHHHHHhhhhcCCCCccceeECCEecc
Confidence 35566677889999987 8899999999999999999888887776 457788888888899999999999999
Q ss_pred ChHHHHHHHhCCCcHHHHHh
Q 033336 93 GCDTVVEKHQGGKLVPLLRD 112 (121)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~ 112 (121)
|+|.+...+..++|...|+.
T Consensus 207 GlDIl~~m~~~geL~~~l~~ 226 (227)
T KOG0911|consen 207 GLDILKEMHEKGELVYTLKE 226 (227)
T ss_pred CcHHHHHHhhcccHHHHhhc
Confidence 99999999999999998875
No 101
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.21 E-value=6.6e-12 Score=80.61 Aligned_cols=83 Identities=13% Similarity=0.344 Sum_probs=49.5
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcHH--------HHHHHHHHh---CCCCccEE-EE--CCeee
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGSK--------IQAALAEWT---GQRTVPNV-FI--GGKHI 91 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~--------~~~~~~~~~---~v~~~P~i-~~--~g~~~ 91 (121)
.++.||++|||+|++..|.++++..+ +.++.|+.+....+ ........+ ++.++|+. ++ +|..+
T Consensus 53 ~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~i 132 (153)
T TIGR02738 53 ALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRKA 132 (153)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCEE
Confidence 34449999999999999999877544 45555555432100 011123445 78999985 55 34432
Q ss_pred cChHHHHHHHhCCCcHHHHHh
Q 033336 92 GGCDTVVEKHQGGKLVPLLRD 112 (121)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~l~~ 112 (121)
. ....|..+.++|.+.|+.
T Consensus 133 ~--~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 133 Y--PVLQGAVDEAELANRMDE 151 (153)
T ss_pred E--EEeecccCHHHHHHHHHH
Confidence 2 134555566666666654
No 102
>PTZ00102 disulphide isomerase; Provisional
Probab=99.19 E-value=1.1e-11 Score=91.98 Aligned_cols=84 Identities=14% Similarity=0.278 Sum_probs=60.9
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC------CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT------SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCD 95 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~ 95 (121)
.++++++ |||+||++|+.+.|.+++++. .+.+..+|.+.+ ......++++++||+ |.+|..+. .
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~-----~~~~~~~~v~~~Pt~~~~~~~~~~~--~ 446 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN-----ETPLEEFSWSAFPTILFVKAGERTP--I 446 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC-----ccchhcCCCcccCeEEEEECCCcce--e
Confidence 3566777 999999999999999977532 256777887764 346778899999996 33454321 1
Q ss_pred HHHHHHhCCCcHHHHHhcCC
Q 033336 96 TVVEKHQGGKLVPLLRDAGA 115 (121)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~~~ 115 (121)
.+.|..+.+.|.++|+.+..
T Consensus 447 ~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 447 PYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred EecCcCCHHHHHHHHHHcCC
Confidence 35566777888888888764
No 103
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.16 E-value=3.1e-10 Score=70.78 Aligned_cols=67 Identities=18% Similarity=0.412 Sum_probs=46.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHh----C---CCceEEEecCCCCcHHH-------------------HHHHHHHhC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQL----G---TSFKVVELDIESDGSKI-------------------QAALAEWTG 77 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~----~---~~~~~~~v~~~~~~~~~-------------------~~~~~~~~~ 77 (121)
.++.+++ ||++||++|+...|.+.++ . ..+.++.++.+...+++ ...+.+.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4566777 9999999999998887653 2 24667777766543322 245778899
Q ss_pred CCCccEE-EE--CCeee
Q 033336 78 QRTVPNV-FI--GGKHI 91 (121)
Q Consensus 78 v~~~P~i-~~--~g~~~ 91 (121)
+.++|++ ++ +|+.+
T Consensus 97 v~~~P~~~lid~~G~i~ 113 (131)
T cd03009 97 IEGIPTLIILDADGEVV 113 (131)
T ss_pred CCCCCEEEEECCCCCEE
Confidence 9999985 55 46554
No 104
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.16 E-value=7.7e-11 Score=82.11 Aligned_cols=87 Identities=20% Similarity=0.282 Sum_probs=54.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcH------HHHHHHHHHhCCCCccEE-EEC--Ceeec
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGS------KIQAALAEWTGQRTVPNV-FIG--GKHIG 92 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~------~~~~~~~~~~~v~~~P~i-~~~--g~~~~ 92 (121)
.++.+++ ||++||++|+.+.|.|+++..+ +.++.|+.+.... .....+.+.+|+.++|++ +++ |+.+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~ 244 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFT 244 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEE
Confidence 4566666 9999999999999999877654 4555555543210 001357789999999996 343 43332
Q ss_pred ChHHHHHHHhCCCcHHHHHhc
Q 033336 93 GCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 93 ~~~~~~~~~~~~~l~~~l~~~ 113 (121)
. ...|..+.++|.+.+...
T Consensus 245 ~--v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 245 P--IGFGVMSADELVDRILLA 263 (271)
T ss_pred E--EEeCCCCHHHHHHHHHHH
Confidence 0 123455566666655443
No 105
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.13 E-value=1.8e-10 Score=85.24 Aligned_cols=62 Identities=15% Similarity=0.325 Sum_probs=45.2
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC-----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCe
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS-----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGK 89 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~ 89 (121)
.+.+++| ||+|||++|+.+.|.|+++... +.+..+|.+.+. .....+.|++.++||+ |.+|.
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~---~~~~~~~~~I~~~PTii~Fk~g~ 439 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQ---KEFAKQELQLGSFPTILFFPKHS 439 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCc---cHHHHHHcCCCccceEEEEECCC
Confidence 3556777 9999999999999999876543 567777777531 1223468999999996 44663
No 106
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.13 E-value=3.4e-11 Score=90.07 Aligned_cols=87 Identities=15% Similarity=0.271 Sum_probs=58.8
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCC-----CCcHH------------------HHHHHHHH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIE-----SDGSK------------------IQAALAEW 75 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~-----~~~~~------------------~~~~~~~~ 75 (121)
++++++| |||+||++|+...|.|+++.. .+.++.|+.+ ....+ ....+.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 4556777 999999999999999977643 2555555431 00010 02346778
Q ss_pred hCCCCccEE-EE--CCeeecChHHHHHHHhCCCcHHHHHhcC
Q 033336 76 TGQRTVPNV-FI--GGKHIGGCDTVVEKHQGGKLVPLLRDAG 114 (121)
Q Consensus 76 ~~v~~~P~i-~~--~g~~~~~~~~~~~~~~~~~l~~~l~~~~ 114 (121)
+++.++|++ ++ +|+.+. .+.|..+.++|.++|+...
T Consensus 135 fgV~giPTt~IIDkdGkIV~---~~~G~~~~eeL~a~Ie~~~ 173 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQR---IVKGSISEAQALALIRNPN 173 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEE---EEeCCCCHHHHHHHHHHhh
Confidence 999999985 55 477665 5566677778888887554
No 107
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.11 E-value=5.9e-10 Score=69.73 Aligned_cols=67 Identities=16% Similarity=0.385 Sum_probs=46.0
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHh----CC---CceEEEecCCCCcH--------------------HHHHHHHHHh
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQL----GT---SFKVVELDIESDGS--------------------KIQAALAEWT 76 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~----~~---~~~~~~v~~~~~~~--------------------~~~~~~~~~~ 76 (121)
.++.+++ ||++||++|+...|.+.++ .. .+.++.|+.+...+ .....+++.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4566666 9999999999998888653 22 36666666655322 1234577789
Q ss_pred CCCCccEE-EEC--Ceee
Q 033336 77 GQRTVPNV-FIG--GKHI 91 (121)
Q Consensus 77 ~v~~~P~i-~~~--g~~~ 91 (121)
++.++|++ +++ |+.+
T Consensus 96 ~v~~iPt~~lid~~G~iv 113 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVV 113 (132)
T ss_pred CCCCCCEEEEECCCCCEE
Confidence 99999985 454 6554
No 108
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=2.7e-11 Score=89.53 Aligned_cols=83 Identities=13% Similarity=0.337 Sum_probs=55.0
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC------ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE--CCeeecChH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS------FKVVELDIESDGSKIQAALAEWTGQRTVPNVFI--GGKHIGGCD 95 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~--~g~~~~~~~ 95 (121)
.++.|++ |||||||||+++.|++++++.. +.+.++|...+ ++. ...+.++|||++ .|....- -
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaN------d~~-~~~~~~fPTI~~~pag~k~~p-v 454 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATAN------DVP-SLKVDGFPTILFFPAGHKSNP-V 454 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccc------cCc-cccccccceEEEecCCCCCCC-c
Confidence 4667888 9999999999999999987653 67888887654 121 235678999843 3321110 0
Q ss_pred HHHHHHhCCCcHHHHHhcCC
Q 033336 96 TVVEKHQGGKLVPLLRDAGA 115 (121)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~~~ 115 (121)
.+.|.+.-+.|...++..+.
T Consensus 455 ~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 455 IYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred ccCCCcchHHHHhhhccCCC
Confidence 33455556666666666653
No 109
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.10 E-value=2.8e-09 Score=62.85 Aligned_cols=80 Identities=16% Similarity=0.277 Sum_probs=64.0
Q ss_pred EEEEeeCCC------cchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC----CCCccEEEECCeeecChHHHH
Q 033336 29 VVVFSKTYC------GYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTG----QRTVPNVFIGGKHIGGCDTVV 98 (121)
Q Consensus 29 v~if~a~~C------~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----v~~~P~i~~~g~~~~~~~~~~ 98 (121)
|.+|+++-- -.|+.++.+|+..+.+|..++|+.++ +.+.++.+..+ ...+|.||++|+++||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~---~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE---ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH---HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 445665443 36888899999999999999988764 34556666654 488999999999999999999
Q ss_pred HHHhCCCcHHHHH
Q 033336 99 EKHQGGKLVPLLR 111 (121)
Q Consensus 99 ~~~~~~~l~~~l~ 111 (121)
.+...++|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999875
No 110
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.10 E-value=1.8e-10 Score=71.42 Aligned_cols=67 Identities=15% Similarity=0.298 Sum_probs=45.5
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcHHHH------------------HHHHHHhCCCCccE
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGSKIQ------------------AALAEWTGQRTVPN 83 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~~------------------~~~~~~~~v~~~P~ 83 (121)
+++++++ ||++|||+|+...|.+.++... +.++.|+.+...+.+. ..+...|++.++|+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 4566666 9999999999999999876543 5666666543322222 23566789999995
Q ss_pred -EEE--CCeee
Q 033336 84 -VFI--GGKHI 91 (121)
Q Consensus 84 -i~~--~g~~~ 91 (121)
+++ +|+.+
T Consensus 104 ~~~ld~~G~v~ 114 (127)
T cd03010 104 TFLIDGDGIIR 114 (127)
T ss_pred EEEECCCceEE
Confidence 555 46544
No 111
>PLN02309 5'-adenylylsulfate reductase
Probab=99.10 E-value=3e-10 Score=83.93 Aligned_cols=61 Identities=20% Similarity=0.451 Sum_probs=45.2
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCCCcHHHHHHHHH-HhCCCCccEE--EECCe
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIESDGSKIQAALAE-WTGQRTVPNV--FIGGK 89 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~-~~~v~~~P~i--~~~g~ 89 (121)
.++.++| ||+|||++|+.+.|.++++.. .+.+.++|.+.. +..++. .+++.++||| |.+|.
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~----~~~la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGD----QKEFAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCc----chHHHHhhCCCceeeEEEEEeCCC
Confidence 3556666 999999999999999977643 377888988732 144554 6899999996 33553
No 112
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.07 E-value=1.1e-10 Score=81.28 Aligned_cols=86 Identities=16% Similarity=0.336 Sum_probs=62.3
Q ss_pred HhhhCCCC-EEE-EeeCCCcchHHHHHHHHHhCC---------CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EEC
Q 033336 21 KEIVSSNP-VVV-FSKTYCGYCTTVKELLKQLGT---------SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIG 87 (121)
Q Consensus 21 ~~~~~~~~-v~i-f~a~~C~~C~~~~~~l~~~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~ 87 (121)
..++.... +++ |||+||++++...|++.+.+. +..+.+||.+.. ..++.+|.+..+||+ |.|
T Consensus 7 ~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-----~~ia~ky~I~KyPTlKvfrn 81 (375)
T KOG0912|consen 7 DSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-----DDIADKYHINKYPTLKVFRN 81 (375)
T ss_pred HHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-----hHHhhhhccccCceeeeeec
Confidence 33444444 445 999999999999999977543 257888888874 679999999999995 889
Q ss_pred CeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 88 GKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 88 g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
|.... .++.|-++.+.|.+.+++.
T Consensus 82 G~~~~--rEYRg~RsVeaL~efi~kq 105 (375)
T KOG0912|consen 82 GEMMK--REYRGQRSVEALIEFIEKQ 105 (375)
T ss_pred cchhh--hhhccchhHHHHHHHHHHH
Confidence 87654 2445555566666666554
No 113
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.03 E-value=2.4e-10 Score=68.27 Aligned_cols=79 Identities=20% Similarity=0.282 Sum_probs=55.9
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC----CceEEEecCCCCcHHHHHHHHHHhCCC--CccEEE-E-C--CeeecCh
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT----SFKVVELDIESDGSKIQAALAEWTGQR--TVPNVF-I-G--GKHIGGC 94 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~--~~P~i~-~-~--g~~~~~~ 94 (121)
+.++++ |+++||++|+.+.+.+++++. .+.++.+|.+.. ..+...+|+. ++|+++ + + |+...
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~-----~~~~~~~~i~~~~~P~~~~~~~~~~~k~~-- 84 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF-----GRHLEYFGLKEEDLPVIAIINLSDGKKYL-- 84 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh-----HHHHHHcCCChhhCCEEEEEecccccccC--
Confidence 456666 999999999999999987654 378888888764 5688899999 999963 3 4 43332
Q ss_pred HHHHHHHhCCCcHHHHHh
Q 033336 95 DTVVEKHQGGKLVPLLRD 112 (121)
Q Consensus 95 ~~~~~~~~~~~l~~~l~~ 112 (121)
...+..+.+.|.+++++
T Consensus 85 -~~~~~~~~~~l~~fi~~ 101 (103)
T cd02982 85 -MPEEELTAESLEEFVED 101 (103)
T ss_pred -CCccccCHHHHHHHHHh
Confidence 12222355666666654
No 114
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.02 E-value=2.4e-09 Score=63.09 Aligned_cols=59 Identities=20% Similarity=0.425 Sum_probs=39.0
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHH----hC--CCceEEEecCCCCcHHHH--------------------HHHHHHhCCC
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQ----LG--TSFKVVELDIESDGSKIQ--------------------AALAEWTGQR 79 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~----~~--~~~~~~~v~~~~~~~~~~--------------------~~~~~~~~v~ 79 (121)
+.+++ ||++||++|+...|.|.+ +. .++.++.|+.+...+++. ..+.+.|++.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~ 81 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGIN 81 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-T
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCC
Confidence 34555 999999999999888854 44 457788888876544433 3445567788
Q ss_pred CccEEE
Q 033336 80 TVPNVF 85 (121)
Q Consensus 80 ~~P~i~ 85 (121)
++|+++
T Consensus 82 ~iP~~~ 87 (95)
T PF13905_consen 82 GIPTLV 87 (95)
T ss_dssp SSSEEE
T ss_pred cCCEEE
Confidence 888753
No 115
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.00 E-value=1.2e-10 Score=76.43 Aligned_cols=83 Identities=17% Similarity=0.352 Sum_probs=50.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCc--------HHHHHHHHHHhCC--CCccEE-EE--CCeeecC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDG--------SKIQAALAEWTGQ--RTVPNV-FI--GGKHIGG 93 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~--------~~~~~~~~~~~~v--~~~P~i-~~--~g~~~~~ 93 (121)
+++||++|||+|++..|.++++..+ +.++-|+.+... ..-...+...||+ .++|+. ++ +|+.+.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~- 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL- 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE-
Confidence 6669999999999999999877544 555555554321 0012346667884 699985 55 465421
Q ss_pred hHHHHHHHhCCCcHHHHHhc
Q 033336 94 CDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~ 113 (121)
..+.|..+.++|.+.++..
T Consensus 152 -~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 152 -PLLQGATDAAGFMARMDTV 170 (181)
T ss_pred -EEEECCCCHHHHHHHHHHH
Confidence 0234455555555555443
No 116
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.00 E-value=8.2e-11 Score=76.44 Aligned_cols=86 Identities=15% Similarity=0.337 Sum_probs=56.4
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCCCcHHH-----------------HHHHHHHhCCCCc
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIESDGSKI-----------------QAALAEWTGQRTV 81 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~-----------------~~~~~~~~~v~~~ 81 (121)
.++.+++ ||++||++|+...+.+.++.. .+.++.++.+...+.+ ...+.+.+|+..+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~ 139 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPL 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCc
Confidence 3555656 999999999998887765432 2677777776543332 2456778999999
Q ss_pred cEE-EEC--CeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 82 PNV-FIG--GKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 82 P~i-~~~--g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
|++ +++ |+.+. ...|..+.+++.+.|+..
T Consensus 140 P~~~lid~~g~i~~---~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 140 PTTFLIDKDGKVVK---VITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CeEEEECCCCcEEE---EEeCCCCHHHHHHHHHHh
Confidence 985 454 66553 334455566666666643
No 117
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.00 E-value=2e-10 Score=92.35 Aligned_cols=87 Identities=24% Similarity=0.310 Sum_probs=56.0
Q ss_pred hCCCCEEE-EeeCCCcchHHHHHHHHHhCCC-----ceEEEecC---CC--CcHHH-----------------HHHHHHH
Q 033336 24 VSSNPVVV-FSKTYCGYCTTVKELLKQLGTS-----FKVVELDI---ES--DGSKI-----------------QAALAEW 75 (121)
Q Consensus 24 ~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~-----~~~~~v~~---~~--~~~~~-----------------~~~~~~~ 75 (121)
++++.+++ |||+||++|+...|.|+++..+ +.++.|.. +. ..+++ ...+.+.
T Consensus 418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 418 LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 35677777 9999999999999999766443 56676642 11 11111 1235567
Q ss_pred hCCCCccEE-EE--CCeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 76 TGQRTVPNV-FI--GGKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 76 ~~v~~~P~i-~~--~g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
|++.++|++ ++ +|+.+. ++.+....++|.++|+.+
T Consensus 498 ~~V~~iPt~ilid~~G~iv~---~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIA---QLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred cCCCccceEEEECCCCeEEE---EEecccCHHHHHHHHHHH
Confidence 899999985 55 577664 344544555566666544
No 118
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.99 E-value=2.8e-10 Score=70.01 Aligned_cols=63 Identities=24% Similarity=0.520 Sum_probs=44.2
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCCceEEEecCCCC-cHHH-----------------HHHHHHHhCCCCccEE-
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTSFKVVELDIESD-GSKI-----------------QAALAEWTGQRTVPNV- 84 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~-~~~~-----------------~~~~~~~~~v~~~P~i- 84 (121)
.++.+++ ||++||++|+.+.|.+.++..++.++.|..+.+ .+++ ...+.+.|++.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~ 98 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV 98 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence 3455666 999999999999999988877766666655432 1111 1347778999999985
Q ss_pred EEC
Q 033336 85 FIG 87 (121)
Q Consensus 85 ~~~ 87 (121)
+++
T Consensus 99 vid 101 (123)
T cd03011 99 IVD 101 (123)
T ss_pred EEc
Confidence 443
No 119
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.95 E-value=4.1e-10 Score=83.00 Aligned_cols=85 Identities=14% Similarity=0.323 Sum_probs=58.8
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC----C---CceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG----T---SFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCD 95 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~----~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~ 95 (121)
++.+++ ||++||++|+.+.|.++++. . .+.+..+|.+.+ .+.. +++.++|++ |.+|.... ..
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n------~~~~-~~i~~~Pt~~~~~~~~~~~-~~ 435 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN------DVPP-FEVEGFPTIKFVPAGKKSE-PV 435 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC------ccCC-CCccccCEEEEEeCCCCcC-ce
Confidence 556777 99999999999999887642 2 467888888754 2444 899999996 33454321 11
Q ss_pred HHHHHHhCCCcHHHHHhcCCcch
Q 033336 96 TVVEKHQGGKLVPLLRDAGALAL 118 (121)
Q Consensus 96 ~~~~~~~~~~l~~~l~~~~~~~~ 118 (121)
.+.|..+.+.|.++|++.+...+
T Consensus 436 ~~~g~~~~~~l~~~l~~~~~~~~ 458 (462)
T TIGR01130 436 PYDGDRTLEDFSKFIAKHATFPL 458 (462)
T ss_pred EecCcCCHHHHHHHHHhcCCCCC
Confidence 34556667778888888765444
No 120
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.94 E-value=3.6e-09 Score=64.64 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=59.7
Q ss_pred CCCEEE-EeeCCCcchHHHHH-HH------HHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EE---CCeeecC
Q 033336 26 SNPVVV-FSKTYCGYCTTVKE-LL------KQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FI---GGKHIGG 93 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~-~l------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~---~g~~~~~ 93 (121)
++.+++ |+++||++|+.+.. +| +.++..|..+.+|..... ...+...|++.++|++ ++ +|+.+.
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e---~~~~~~~~~~~~~P~~~~i~~~~g~~l~- 92 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSE---GQRFLQSYKVDKYPHIAIIDPRTGEVLK- 92 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCcc---HHHHHHHhCccCCCeEEEEeCccCcEeE-
Confidence 566766 99999999999854 33 334456888888876521 2568899999999996 44 466665
Q ss_pred hHHHHHHHhCCCcHHHHHhc
Q 033336 94 CDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~~ 113 (121)
.+.|..+.++|...|+.+
T Consensus 93 --~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 93 --VWSGNITPEDLLSQLIEF 110 (114)
T ss_pred --EEcCCCCHHHHHHHHHHH
Confidence 667777788888777764
No 121
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.94 E-value=2.8e-09 Score=66.51 Aligned_cols=73 Identities=26% Similarity=0.362 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhCCCCEEE-EeeCCCcchHHHHHHH-------HHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccE
Q 033336 12 ELEIALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELL-------KQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPN 83 (121)
Q Consensus 12 ~~~~~~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l-------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~ 83 (121)
.+++.++..++ ++++|++ |+++||++|+.+...+ +.+...|..++++.+..... .. ..| ..+|+
T Consensus 11 ~~eeal~~Ak~--~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~----~~-~~g-~~vPt 82 (130)
T cd02960 11 TYEEGLYKAKK--SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN----LS-PDG-QYVPR 82 (130)
T ss_pred hHHHHHHHHHH--CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC----cC-ccC-cccCe
Confidence 45565555553 4777777 9999999999997643 22334677777776532111 11 123 68999
Q ss_pred E-EEC--Ceeec
Q 033336 84 V-FIG--GKHIG 92 (121)
Q Consensus 84 i-~~~--g~~~~ 92 (121)
+ |++ |+.+.
T Consensus 83 ivFld~~g~vi~ 94 (130)
T cd02960 83 IMFVDPSLTVRA 94 (130)
T ss_pred EEEECCCCCCcc
Confidence 6 554 54443
No 122
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.87 E-value=1.1e-08 Score=59.03 Aligned_cols=65 Identities=26% Similarity=0.602 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhCCCCEEE-EeeCCCcchHHHHHHH------HH-hCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE
Q 033336 13 LEIALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELL------KQ-LGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV 84 (121)
Q Consensus 13 ~~~~~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l------~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i 84 (121)
+++.++..++ +++++++ |+++||++|+.+...+ .+ +..+|..+.+|.+...... .+.. .++|++
T Consensus 6 ~~~al~~A~~--~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~ 77 (82)
T PF13899_consen 6 YEEALAEAKK--EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTF 77 (82)
T ss_dssp HHHHHHHHHH--HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEE
T ss_pred HHHHHHHHHH--cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEE
Confidence 3344444443 4778888 9999999999997644 33 5667999999987643222 1211 569996
Q ss_pred E
Q 033336 85 F 85 (121)
Q Consensus 85 ~ 85 (121)
+
T Consensus 78 ~ 78 (82)
T PF13899_consen 78 F 78 (82)
T ss_dssp E
T ss_pred E
Confidence 4
No 123
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.86 E-value=2e-09 Score=61.30 Aligned_cols=51 Identities=31% Similarity=0.627 Sum_probs=36.5
Q ss_pred eeCCCcchHHHHHHHHH----hCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeee
Q 033336 33 SKTYCGYCTTVKELLKQ----LGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHI 91 (121)
Q Consensus 33 ~a~~C~~C~~~~~~l~~----~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~ 91 (121)
++++|++|..+...+++ ++.++.++++ .. .+++ ..||+.++|++++||+.+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~--~~-----~~~~-~~ygv~~vPalvIng~~~ 60 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELGIEVEIIDI--ED-----FEEI-EKYGVMSVPALVINGKVV 60 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET--TT-----HHHH-HHTT-SSSSEEEETTEEE
T ss_pred eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc--cC-----HHHH-HHcCCCCCCEEEECCEEE
Confidence 67889999988776655 4444555554 22 2456 899999999999999754
No 124
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.86 E-value=1.4e-08 Score=64.75 Aligned_cols=73 Identities=25% Similarity=0.458 Sum_probs=51.4
Q ss_pred HHhhhCCCCEEE-EeeCCCcchHHHHHHHHH----hCC---CceEEEecCCCCcHHHH--------------------HH
Q 033336 20 AKEIVSSNPVVV-FSKTYCGYCTTVKELLKQ----LGT---SFKVVELDIESDGSKIQ--------------------AA 71 (121)
Q Consensus 20 ~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~----~~~---~~~~~~v~~~~~~~~~~--------------------~~ 71 (121)
....++++.|.+ |.|.|||+|+.+.|.+++ +.. ++.++-|+.+.+.+++. +.
T Consensus 27 ~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~ 106 (157)
T KOG2501|consen 27 ASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQK 106 (157)
T ss_pred HhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHH
Confidence 334456776766 999999999999887754 333 38899999887655544 34
Q ss_pred HHHHhCCCCccEE-EE--CCeeec
Q 033336 72 LAEWTGQRTVPNV-FI--GGKHIG 92 (121)
Q Consensus 72 ~~~~~~v~~~P~i-~~--~g~~~~ 92 (121)
+..+|++.++|++ ++ +|..+.
T Consensus 107 l~~ky~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 107 LSEKYEVKGIPALVILKPDGTVVT 130 (157)
T ss_pred HHHhcccCcCceeEEecCCCCEeh
Confidence 4557899999986 34 465553
No 125
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.84 E-value=1.3e-08 Score=61.78 Aligned_cols=57 Identities=16% Similarity=0.406 Sum_probs=35.0
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC----CceEEEecCCCCcHHHHHHHHHHhCCCCccEE
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT----SFKVVELDIESDGSKIQAALAEWTGQRTVPNV 84 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i 84 (121)
++++++ ||++|||+|+...|.++++.. .+.++.+. +...++ ...+.+.+++..+|++
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~-~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAE-HQRFLKKHGLEAFPYV 82 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHH-HHHHHHHhCCCCCcEE
Confidence 566666 999999999999998877542 34555443 222222 2334455555445554
No 126
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.78 E-value=1.5e-07 Score=52.65 Aligned_cols=67 Identities=19% Similarity=0.358 Sum_probs=54.0
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC-CeeecChHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEK 100 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~-g~~~~~~~~~~~~ 100 (121)
.+|+.+|||+|++++-.+++.+.+|+.+.++..... +++.+..+...+|++..+ |..+.++..+..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~----~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKP----AEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCC----HHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 468899999999999999999999999999875432 456667788899999885 8888766666544
No 127
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=98.78 E-value=1.3e-07 Score=51.69 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=55.2
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
.+|+.++||+|++++-.++..+.+|..+.++....... ++....+...+|++..+|..+.++..+..+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 46888999999999999999999999999887654322 466677888999999999988877666554
No 128
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.75 E-value=1.6e-08 Score=75.92 Aligned_cols=84 Identities=20% Similarity=0.346 Sum_probs=63.0
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHH------hCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EEC--CeeecChHH
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQ------LGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FIG--GKHIGGCDT 96 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~~--g~~~~~~~~ 96 (121)
++|++ |||+||-.|+.+++..-. .-.++...+.|...++.+..+ +-+++|+-++|++ |++ |++.. .
T Consensus 475 ~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~-lLk~~~~~G~P~~~ff~~~g~e~~---~ 550 (569)
T COG4232 475 KPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITA-LLKRLGVFGVPTYLFFGPQGSEPE---I 550 (569)
T ss_pred CcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHH-HHHHcCCCCCCEEEEECCCCCcCc---C
Confidence 58888 999999999999775532 223377888888877676665 5567799999985 554 55444 3
Q ss_pred HHHHHhCCCcHHHHHhcC
Q 033336 97 VVEKHQGGKLVPLLRDAG 114 (121)
Q Consensus 97 ~~~~~~~~~l~~~l~~~~ 114 (121)
+.+.++.+.+.+++++..
T Consensus 551 l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 551 LTGFLTADAFLEHLERAA 568 (569)
T ss_pred CcceecHHHHHHHHHHhc
Confidence 778888999999988753
No 129
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.1e-08 Score=74.46 Aligned_cols=59 Identities=27% Similarity=0.549 Sum_probs=46.0
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGG 88 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g 88 (121)
.++..++ ||+|||++|+.+.|.+.++... ..+..||.+.. ..++..|++.++||+ |..|
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-----~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-----KDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-----HHHHHhcCCccCcEEEEEcCC
Confidence 3445555 9999999999999988865433 56777887764 679999999999997 3455
No 130
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.69 E-value=2.4e-08 Score=75.92 Aligned_cols=69 Identities=16% Similarity=0.302 Sum_probs=48.9
Q ss_pred HHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhC-----CCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCee
Q 033336 16 ALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLG-----TSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKH 90 (121)
Q Consensus 16 ~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~ 90 (121)
..+.+..+...-.+.+|.+++||+|..+...++++. ....++++... ++++++|++.++|++++||+.
T Consensus 467 ~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~-------~~~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 467 LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF-------PDLKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECccc-------HHHHHhCCceecCEEEECCEE
Confidence 455555543333455699999999999887776543 33455554443 579999999999999999975
Q ss_pred e
Q 033336 91 I 91 (121)
Q Consensus 91 ~ 91 (121)
+
T Consensus 540 ~ 540 (555)
T TIGR03143 540 V 540 (555)
T ss_pred E
Confidence 5
No 131
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.68 E-value=9.7e-08 Score=59.14 Aligned_cols=37 Identities=19% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC-----ceEEEecC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS-----FKVVELDI 61 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~-----~~~~~v~~ 61 (121)
+++.+++ ||++||++|....|.|.++..+ +.++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 4566666 9999999999998888665332 56776654
No 132
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.68 E-value=3.4e-07 Score=51.84 Aligned_cols=68 Identities=19% Similarity=0.545 Sum_probs=52.3
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC----CeeecChHHHHHHH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG----GKHIGGCDTVVEKH 101 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~----g~~~~~~~~~~~~~ 101 (121)
++.+|+.+.||+|++++-++...+.+|+++.++... ..++ ...+...+|++..+ |..+.++..+..+.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-----~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL 72 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-----RKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL 72 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-----HHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence 356799999999999999999999999998876532 1233 23577899999876 67787776766554
No 133
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.68 E-value=3e-07 Score=51.33 Aligned_cols=66 Identities=12% Similarity=0.247 Sum_probs=51.3
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC-CeeecChHHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEKH 101 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~-g~~~~~~~~~~~~~ 101 (121)
+|+.++||+|++++-.+...+.+|+.+.++.... .. ..+..+...+|+++.+ |..++++..+..+.
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~----~~-~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDE----AT-PIRMIGAKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCCeEEEECCCCch----HH-HHHhcCCCccCEEEeCCCeEeehHHHHHHHH
Confidence 5788999999999999999999999888775432 12 2234566789999886 88888887777664
No 134
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.66 E-value=2.2e-08 Score=66.03 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=30.1
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC-ceE------EEecCCC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS-FKV------VELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~-~~~------~~v~~~~ 63 (121)
.++..++ |||+||++|+.-.|.+.++... +.+ .-||.++
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd 104 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADD 104 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECcc
Confidence 4566666 9999999999999999988643 555 6666654
No 135
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.64 E-value=1.8e-07 Score=49.69 Aligned_cols=56 Identities=21% Similarity=0.478 Sum_probs=40.6
Q ss_pred EEEeeCCCcchHHHHHHHHHh---CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC
Q 033336 30 VVFSKTYCGYCTTVKELLKQL---GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG 87 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~ 87 (121)
++||.+||++|+.+.+.+.+. ...+.+..++.+....... ....+++..+|++++.
T Consensus 2 ~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~P~~~~~ 60 (69)
T cd01659 2 VLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK--ELKRYGVGGVPTLVVF 60 (69)
T ss_pred EEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh--HHHhCCCccccEEEEE
Confidence 569999999999999999864 5557777777766532211 1246789999997553
No 136
>smart00594 UAS UAS domain.
Probab=98.64 E-value=1.7e-07 Score=57.92 Aligned_cols=91 Identities=14% Similarity=0.252 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhCCCCEEE-EeeCCCcchHHHHH-HH------HHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccE
Q 033336 12 ELEIALNKAKEIVSSNPVVV-FSKTYCGYCTTVKE-LL------KQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPN 83 (121)
Q Consensus 12 ~~~~~~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~-~l------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~ 83 (121)
.+++.++.... +++.+++ |+++||++|+.+.. +| +.++..|.+..+|..... ...++..|++.++|+
T Consensus 15 s~~~a~~~Ak~--~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e---g~~l~~~~~~~~~P~ 89 (122)
T smart00594 15 SLEAAKQEASR--QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE---GQRVSQFYKLDSFPY 89 (122)
T ss_pred CHHHHHHHHHh--hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh---HHHHHHhcCcCCCCE
Confidence 34444444442 3556666 99999999998854 23 334456777777776432 256899999999999
Q ss_pred E-EEC--C-e----eecChHHHHHHHhCCCcHHHH
Q 033336 84 V-FIG--G-K----HIGGCDTVVEKHQGGKLVPLL 110 (121)
Q Consensus 84 i-~~~--g-~----~~~~~~~~~~~~~~~~l~~~l 110 (121)
+ +++ | . .++ .+.|..+.++|...|
T Consensus 90 ~~~l~~~~g~~~~~~~~---~~~G~~~~~~l~~~l 121 (122)
T smart00594 90 VAIVDPRTGQRVIEWVG---VVEGEISPEELMTFL 121 (122)
T ss_pred EEEEecCCCceeEEEec---cccCCCCHHHHHHhh
Confidence 6 443 3 1 232 455655555555443
No 137
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.64 E-value=4.2e-08 Score=65.61 Aligned_cols=37 Identities=11% Similarity=0.346 Sum_probs=28.3
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDI 61 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~ 61 (121)
.++.+++ ||++|||+|....|.|.++.. .+.++.|+.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 4666677 999999999988887766533 377888875
No 138
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.64 E-value=1.3e-07 Score=62.74 Aligned_cols=66 Identities=17% Similarity=0.319 Sum_probs=41.0
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcHHH----------------HHHHHHHhCCCCccEE-
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGSKI----------------QAALAEWTGQRTVPNV- 84 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~----------------~~~~~~~~~v~~~P~i- 84 (121)
.++++++ ||++|||+|+...|.+.+.... +.++-++.+. .+++ ..++.+.|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMISDGT-PAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEeCCC-HHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 4555666 9999999999999888665432 3344444221 1111 2345667889999974
Q ss_pred EEC--Ceee
Q 033336 85 FIG--GKHI 91 (121)
Q Consensus 85 ~~~--g~~~ 91 (121)
+++ |+..
T Consensus 152 lID~~G~I~ 160 (189)
T TIGR02661 152 LLDQDGKIR 160 (189)
T ss_pred EECCCCeEE
Confidence 544 5544
No 139
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.63 E-value=6.3e-08 Score=73.05 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=51.7
Q ss_pred HHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeec
Q 033336 16 ALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIG 92 (121)
Q Consensus 16 ~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~ 92 (121)
..+.++.+...-.+.+|++++||+|..+...++++... +..-.+|... .+++++.|++.++|++|+||+.+.
T Consensus 107 ~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-----~~~~~~~~~v~~VP~~~i~~~~~~ 181 (517)
T PRK15317 107 VIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-----FQDEVEARNIMAVPTVFLNGEEFG 181 (517)
T ss_pred HHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-----CHhHHHhcCCcccCEEEECCcEEE
Confidence 44555555444456679999999999998888776543 3333344433 367999999999999999987653
No 140
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.63 E-value=9.7e-09 Score=76.70 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=46.2
Q ss_pred EEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE
Q 033336 29 VVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV 84 (121)
Q Consensus 29 v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i 84 (121)
-+| ||++|||+|+++.|.+++++.. ..++.|-..++.++.+..+++.++|+.+|++
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTL 120 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCcee
Confidence 455 9999999999999999998876 3555555555556667889999999999998
No 141
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.61 E-value=2e-07 Score=55.61 Aligned_cols=62 Identities=26% Similarity=0.496 Sum_probs=41.4
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhC-----CCceEEEecCCCC-cHHHH-----------------HHHHHHhCCCCc
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLG-----TSFKVVELDIESD-GSKIQ-----------------AALAEWTGQRTV 81 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~-----~~~~~~~v~~~~~-~~~~~-----------------~~~~~~~~v~~~ 81 (121)
++.+++ ||++||++|+...+.+.++. ..+.++.|+.+.. .+.+. ..+.+.|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 455555 99999999999888776543 2367777777664 23322 235666788888
Q ss_pred cEE-EEC
Q 033336 82 PNV-FIG 87 (121)
Q Consensus 82 P~i-~~~ 87 (121)
|++ +++
T Consensus 99 P~~~l~d 105 (116)
T cd02966 99 PTTFLID 105 (116)
T ss_pred ceEEEEC
Confidence 875 443
No 142
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.60 E-value=9.8e-07 Score=50.13 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=54.1
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE--CCeeecChHHHHHHHh
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI--GGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~--~g~~~~~~~~~~~~~~ 102 (121)
+.+|+.++||+|.+++-.+++.+.+|+.++++... ...+++....+...+|++.. +|..+.++..+..+..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~---~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGS---PKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCCh---HHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 45688899999999999999999999998875432 22345666667789999876 3677887777776643
No 143
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.60 E-value=9.3e-07 Score=49.37 Aligned_cols=68 Identities=21% Similarity=0.260 Sum_probs=54.5
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+|+.++||+|++++-.++..+.+|+.+.++..... +++.+......+|++..+|..+.++..+..+.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPP----EDLAELNPYGTVPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCC----HHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 468889999999999999999999999888865432 44556667789999988888888776776654
No 144
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.58 E-value=8.5e-07 Score=49.71 Aligned_cols=71 Identities=15% Similarity=0.206 Sum_probs=55.7
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+|+.++|++|++++-.++..+.+|+.+.++.... +...+++.+......+|++..+|..+.+...+..+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKG-EHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccC-CcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 46899999999999999999999999998886432 222356777777789999988888887766666553
No 145
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=4.6e-07 Score=62.44 Aligned_cols=74 Identities=28% Similarity=0.572 Sum_probs=63.3
Q ss_pred cchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCC----CCccEEEECCeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 38 GYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQ----RTVPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 38 ~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v----~~~P~i~~~g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
-.|..++.+|+...+.|...+|+++.. ..+++....|. ..+|.+|++|.+|||..++.++...++|.++|+..
T Consensus 148 E~C~~VR~ilesf~V~v~ERDVSMd~~---fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 148 EDCNAVRAILESFRVKVDERDVSMDSE---FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRLNEEGKLGKLLKGI 224 (281)
T ss_pred HHHHHHHHHHHhCceEEEEecccccHH---HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhhhhcchHHHHHhcC
Confidence 579999999999999999999999853 34555555554 58899999999999999999999999999999876
Q ss_pred C
Q 033336 114 G 114 (121)
Q Consensus 114 ~ 114 (121)
-
T Consensus 225 p 225 (281)
T KOG2824|consen 225 P 225 (281)
T ss_pred C
Confidence 4
No 146
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.56 E-value=7.6e-08 Score=65.85 Aligned_cols=37 Identities=14% Similarity=0.305 Sum_probs=27.6
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDI 61 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~ 61 (121)
.++.+++ ||++||++|....|.|.++.. .+.++.|+.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 3566666 999999999988887766532 267777775
No 147
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.56 E-value=5.1e-07 Score=57.08 Aligned_cols=41 Identities=29% Similarity=0.544 Sum_probs=30.5
Q ss_pred hCCCCEEE-EeeC-CCcchHHHHHHHHHhC-----CCceEEEecCCCC
Q 033336 24 VSSNPVVV-FSKT-YCGYCTTVKELLKQLG-----TSFKVVELDIESD 64 (121)
Q Consensus 24 ~~~~~v~i-f~a~-~C~~C~~~~~~l~~~~-----~~~~~~~v~~~~~ 64 (121)
++++++++ ||++ |||+|+...|.+.++. ..+.++-|+.+.+
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~ 73 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD 73 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence 35667666 9999 9999999998887652 2367777776654
No 148
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.53 E-value=8.7e-07 Score=49.43 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=52.5
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-CCeeecChHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEK 100 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~ 100 (121)
.+|+.++|++|++++-.++..+.+|+.+.++.... ....+++.+..+...+|++.. +|..+.++..+..+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAG-EQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCCCceEEEeecccC-ccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 46888999999999999999999999988886432 111244666677789999976 66677766666554
No 149
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.52 E-value=5.3e-07 Score=61.01 Aligned_cols=70 Identities=19% Similarity=0.461 Sum_probs=47.4
Q ss_pred HHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCc------HHHHHHHHHHhCCCCccEEEE
Q 033336 17 LNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDG------SKIQAALAEWTGQRTVPNVFI 86 (121)
Q Consensus 17 ~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~------~~~~~~~~~~~~v~~~P~i~~ 86 (121)
...++.+.++..+++||.+.|++|+.+.|+++.+..+ +.++-|+.|... ......+++.+|+..+|++|+
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~L 189 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFL 189 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEE
Confidence 3444444455567779999999999999999887655 455555554210 000256788899999999754
No 150
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.51 E-value=2.2e-07 Score=70.07 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=51.9
Q ss_pred HHHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeee
Q 033336 15 IALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHI 91 (121)
Q Consensus 15 ~~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~ 91 (121)
+..+.++.+...-.+.+|.++.||+|..+...++++... +..--+|... .++++++|++.++|++|+||+.+
T Consensus 107 ~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~-----~~~~~~~~~v~~VP~~~i~~~~~ 181 (515)
T TIGR03140 107 GIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGAL-----FQDEVEALGIQGVPAVFLNGEEF 181 (515)
T ss_pred HHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchh-----CHHHHHhcCCcccCEEEECCcEE
Confidence 345556555444456779999999999998888776543 3332333333 36788999999999999998765
Q ss_pred c
Q 033336 92 G 92 (121)
Q Consensus 92 ~ 92 (121)
.
T Consensus 182 ~ 182 (515)
T TIGR03140 182 H 182 (515)
T ss_pred E
Confidence 3
No 151
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.48 E-value=3.4e-06 Score=49.27 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=56.4
Q ss_pred CCCEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC-CeeecChHHHHHH
Q 033336 26 SNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEK 100 (121)
Q Consensus 26 ~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~-g~~~~~~~~~~~~ 100 (121)
.+.+.+|+.+.||+|++++-.+...+.+|+.+.++.... .+++.+..+...+|++..+ |..+.++..+..+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~----~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDK----PDWFLEKNPQGKVPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCC----cHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence 445777889999999999999999999999999887542 1346666677899999987 7888777666654
No 152
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.44 E-value=3.8e-07 Score=59.31 Aligned_cols=67 Identities=22% Similarity=0.459 Sum_probs=43.0
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCC-------CcHHHHHH-----------------HHH
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIES-------DGSKIQAA-----------------LAE 74 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~-------~~~~~~~~-----------------~~~ 74 (121)
.++.+++ ||++|||.|....+.|.++.. .+.++.|+.+. ..++++.. +.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 3555555 999999999987777765432 36777777654 22333332 344
Q ss_pred HhCCCCccEE-EEC--Ceee
Q 033336 75 WTGQRTVPNV-FIG--GKHI 91 (121)
Q Consensus 75 ~~~v~~~P~i-~~~--g~~~ 91 (121)
.|++..+|++ +++ |+.+
T Consensus 104 ~~~v~~~P~~~lid~~G~v~ 123 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKLV 123 (171)
T ss_pred HcCCCcCCcEEEECCCCeEE
Confidence 6788899974 554 5443
No 153
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.43 E-value=3e-06 Score=47.80 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=56.6
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
+|+.++||+|++++-.++..+.+|.++.++.... ...+....+...+|++..+|..+.++..+..+.
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~----~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL 67 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEK----RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYL 67 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTST----SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccc----hhHHHhhcccccceEEEECCEEEeCHHHHHHHH
Confidence 4788999999999999999999999999987654 355677778889999999999999887776654
No 154
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.42 E-value=4e-06 Score=46.64 Aligned_cols=70 Identities=20% Similarity=0.362 Sum_probs=53.7
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
.+|+.+.||+|++++-.++..+.+|+.+.++.... +.....+.+......+|++..+|..+.++..+..+
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 2 KLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKG-ETRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCc-ccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 46888999999999999999999999998886432 11124455666677899999899888776666554
No 155
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.40 E-value=7.7e-08 Score=60.15 Aligned_cols=74 Identities=24% Similarity=0.543 Sum_probs=34.1
Q ss_pred HHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCC---CceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EEC--Cee
Q 033336 17 LNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FIG--GKH 90 (121)
Q Consensus 17 ~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~~--g~~ 90 (121)
.+.+........+++|..+|||.|++..|+|.+... ...+.-+..+.+.+-....+. .|...+|++ |.+ |+.
T Consensus 33 ~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt--~g~~~IP~~I~~d~~~~~ 110 (129)
T PF14595_consen 33 IEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT--NGGRSIPTFIFLDKDGKE 110 (129)
T ss_dssp HHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT---SS--SSEEEEE-TT--E
T ss_pred HHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh--CCCeecCEEEEEcCCCCE
Confidence 344444444557788999999999999999976532 233333333322111111111 578999996 453 555
Q ss_pred ec
Q 033336 91 IG 92 (121)
Q Consensus 91 ~~ 92 (121)
++
T Consensus 111 lg 112 (129)
T PF14595_consen 111 LG 112 (129)
T ss_dssp EE
T ss_pred eE
Confidence 53
No 156
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.7e-07 Score=57.34 Aligned_cols=79 Identities=23% Similarity=0.388 Sum_probs=53.4
Q ss_pred EEEeeCCCcchHHHHHHH------HHhCCC-ceEEEecCCCCcH-----------HHHHHHHHHhCCCCccEE-EEC--C
Q 033336 30 VVFSKTYCGYCTTVKELL------KQLGTS-FKVVELDIESDGS-----------KIQAALAEWTGQRTVPNV-FIG--G 88 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l------~~~~~~-~~~~~v~~~~~~~-----------~~~~~~~~~~~v~~~P~i-~~~--g 88 (121)
++|..+.|++|.+++..+ +++-.+ +.++.++.....+ .-..++++.++++++|++ |++ |
T Consensus 47 lmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfvFfdk~G 126 (182)
T COG2143 47 LMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFVFFDKTG 126 (182)
T ss_pred EEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEEEEcCCC
Confidence 339999999999997644 333333 6666666442110 112579999999999996 444 6
Q ss_pred eeecChHHHHHHHhCCCcHHHHH
Q 033336 89 KHIGGCDTVVEKHQGGKLVPLLR 111 (121)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~l~ 111 (121)
+.+. .+-|+.+++++..+++
T Consensus 127 k~Il---~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 127 KTIL---ELPGYMPPEQFLAVLK 146 (182)
T ss_pred CEEE---ecCCCCCHHHHHHHHH
Confidence 7776 6777777777777664
No 157
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.38 E-value=3.8e-06 Score=48.27 Aligned_cols=55 Identities=31% Similarity=0.645 Sum_probs=44.0
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECC
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGG 88 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g 88 (121)
++++|+.+.|+-|..+...+.++..+ +.+..+|++.+ +++.++|+. .+|.+.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d-----~~l~~~Y~~-~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDED-----PELFEKYGY-RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTT-----HHHHHHSCT-STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCC-----HHHHHHhcC-CCCEEEEcC
Confidence 36779999999999999999987543 67777777765 568889996 699999888
No 158
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.37 E-value=2.3e-06 Score=55.30 Aligned_cols=63 Identities=22% Similarity=0.489 Sum_probs=37.4
Q ss_pred CCCCEEE-EeeCCCcchHHHHH-HH------HHhCCCceEEEecCCCCcHHHHHHHHHHh--------CCCCccE-EEE-
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKE-LL------KQLGTSFKVVELDIESDGSKIQAALAEWT--------GQRTVPN-VFI- 86 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~-~l------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------~v~~~P~-i~~- 86 (121)
++++|++ ++++||+.|..|.. .+ +-++..|.-|+||.+.. +.+...| |..++|+ +|+
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~-----Pdid~~y~~~~~~~~~~gGwPl~vflt 110 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER-----PDIDKIYMNAVQAMSGSGGWPLTVFLT 110 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT------HHHHHHHHHHHHHHHS---SSEEEEE-
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC-----ccHHHHHHHHHHHhcCCCCCCceEEEC
Confidence 4778888 99999999998854 33 44556688999998774 4454444 8899997 565
Q ss_pred -CCeeec
Q 033336 87 -GGKHIG 92 (121)
Q Consensus 87 -~g~~~~ 92 (121)
+|+.+.
T Consensus 111 Pdg~p~~ 117 (163)
T PF03190_consen 111 PDGKPFF 117 (163)
T ss_dssp TTS-EEE
T ss_pred CCCCeee
Confidence 466553
No 159
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.36 E-value=1.4e-06 Score=55.75 Aligned_cols=37 Identities=19% Similarity=0.251 Sum_probs=27.6
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIE 62 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~ 62 (121)
.++.+++ ||++||| |....|.|.++.. .+.++.|+.+
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 3566777 9999999 9998888876532 3677777653
No 160
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.35 E-value=1.8e-06 Score=59.02 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=50.0
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCC-C--ceEEEecCC---CCc----------------------------------HHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGT-S--FKVVELDIE---SDG----------------------------------SKI 68 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~-~--~~~~~v~~~---~~~----------------------------------~~~ 68 (121)
|++|..+.||+|+++.+.+.++.. . +.++..... +.. -+.
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~~ 190 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIAD 190 (232)
T ss_pred EEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHHH
Confidence 444999999999999998988643 2 323222221 100 011
Q ss_pred HHHHHHHhCCCCccEEEE-CCeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 69 QAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 69 ~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
..++++.+|++++|++++ ||+.+.| +.+.++|.++|+.+
T Consensus 191 ~~~la~~lgi~gTPtiv~~~G~~~~G------~~~~~~L~~~l~~~ 230 (232)
T PRK10877 191 HYALGVQFGVQGTPAIVLSNGTLVPG------YQGPKEMKAFLDEH 230 (232)
T ss_pred hHHHHHHcCCccccEEEEcCCeEeeC------CCCHHHHHHHHHHc
Confidence 233566789999999877 8887754 44555666666654
No 161
>PLN02412 probable glutathione peroxidase
Probab=98.35 E-value=1.3e-06 Score=56.85 Aligned_cols=38 Identities=13% Similarity=0.283 Sum_probs=27.8
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIE 62 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~ 62 (121)
.++.+++ ||++|||.|....|.|.++.. .+.++.|+.+
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 3566666 999999999987776755432 3778888764
No 162
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=5.6e-07 Score=65.64 Aligned_cols=80 Identities=16% Similarity=0.326 Sum_probs=51.3
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCC------CceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EE-CCeeecChHHH
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGT------SFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FI-GGKHIGGCDTV 97 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~-~g~~~~~~~~~ 97 (121)
...++ ||+|||++|+.+.|.++++.. .+.+..++... ...++..+++..+|++ ++ +|.. .....
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~-----~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~ 235 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV-----HKSLASRLEVRGYPTLKLFPPGEE--DIYYY 235 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch-----HHHHhhhhcccCCceEEEecCCCc--ccccc
Confidence 33444 999999999999888877543 35666666652 3568899999999996 33 4544 11133
Q ss_pred HHHHhCCCcHHHHHhc
Q 033336 98 VEKHQGGKLVPLLRDA 113 (121)
Q Consensus 98 ~~~~~~~~l~~~l~~~ 113 (121)
.+.++.+.+..++...
T Consensus 236 ~~~R~~~~i~~~v~~~ 251 (383)
T KOG0191|consen 236 SGLRDSDSIVSFVEKK 251 (383)
T ss_pred cccccHHHHHHHHHhh
Confidence 3444445555555443
No 163
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.27 E-value=2.3e-06 Score=54.72 Aligned_cols=37 Identities=22% Similarity=0.417 Sum_probs=26.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHh----CC-CceEEEecC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQL----GT-SFKVVELDI 61 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~----~~-~~~~~~v~~ 61 (121)
.++.+++ ||++|||+|....|.+.++ +. .+.++.++.
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 4666666 9999999999888766554 32 367777764
No 164
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.26 E-value=1.5e-06 Score=51.51 Aligned_cols=60 Identities=30% Similarity=0.617 Sum_probs=43.2
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCC-CCcHHHHHHHHHHhC--CCCccEEE--ECCee
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIE-SDGSKIQAALAEWTG--QRTVPNVF--IGGKH 90 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~-~~~~~~~~~~~~~~~--v~~~P~i~--~~g~~ 90 (121)
+..+++ ||++|||+|+.+.|.+.++... ..++.++.. .. ..+...++ +..+|++. .++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDEN-----PDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCC-----hHHHHHHhhhhccCCeEEEEeCcch
Confidence 556666 8999999999999999776544 467777775 32 45666777 78889864 45554
No 165
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.25 E-value=1.4e-05 Score=44.98 Aligned_cols=70 Identities=11% Similarity=0.148 Sum_probs=55.1
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
.+|+.+.|++|++++-.+++.+.+|+.+.++..... ...+++.+......+|++..+|..+.++..+..+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSE-HNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCc-cCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence 468889999999999999999999999988874321 1124577777788999998899888877666654
No 166
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.25 E-value=1.3e-06 Score=54.68 Aligned_cols=81 Identities=21% Similarity=0.270 Sum_probs=58.5
Q ss_pred CEEEEee---CCCcchHHHHHHHHHh----C-CCceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHH
Q 033336 28 PVVVFSK---TYCGYCTTVKELLKQL----G-TSFKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTV 97 (121)
Q Consensus 28 ~v~if~a---~~C~~C~~~~~~l~~~----~-~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~ 97 (121)
..++|.+ -.+|-+..+.-+|+++ . .++.+.+||.+.+ +.++.+||+.++||+ |.+|+.++ .+
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-----~~LA~~fgV~siPTLl~FkdGk~v~---~i 107 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-----EAIGDRFGVFRFPATLVFTGGNYRG---VL 107 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-----HHHHHHcCCccCCEEEEEECCEEEE---EE
Confidence 3444554 2355665554455443 3 2367999999886 789999999999995 66899987 77
Q ss_pred HHHHhCCCcHHHHHhcCCc
Q 033336 98 VEKHQGGKLVPLLRDAGAL 116 (121)
Q Consensus 98 ~~~~~~~~l~~~l~~~~~~ 116 (121)
.|..+.+++.++|++.-..
T Consensus 108 ~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 108 NGIHPWAELINLMRGLVEP 126 (132)
T ss_pred eCcCCHHHHHHHHHHHhcC
Confidence 7888888899988876543
No 167
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.20 E-value=6.5e-06 Score=49.51 Aligned_cols=49 Identities=12% Similarity=0.287 Sum_probs=37.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRT 80 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~ 80 (121)
|.+|+.++|++|+++..+|++.+.+|.++++..++... .++....+..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~---~~l~~~~~~~~ 49 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTK---EELKELLAKLG 49 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCH---HHHHHHHHhcC
Confidence 35799999999999999999999999999998765443 33444444333
No 168
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.20 E-value=6.1e-06 Score=57.12 Aligned_cols=92 Identities=9% Similarity=0.162 Sum_probs=57.5
Q ss_pred HHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcH------HHHHHHHHHhCCCCccEEEE-
Q 033336 16 ALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGS------KIQAALAEWTGQRTVPNVFI- 86 (121)
Q Consensus 16 ~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~------~~~~~~~~~~~v~~~P~i~~- 86 (121)
..+.++.+-+...+++||.+.||+|+++.|+++.+..+ +.++.|+.|.... .....++..+|+..+|++|+
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv 220 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLV 220 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEE
Confidence 34445555566677779999999999999999776554 4555555443210 01144778889999999744
Q ss_pred C---CeeecChHHHHHHHhCCCcHHHH
Q 033336 87 G---GKHIGGCDTVVEKHQGGKLVPLL 110 (121)
Q Consensus 87 ~---g~~~~~~~~~~~~~~~~~l~~~l 110 (121)
+ ++..- -..|.++.++|.+-|
T Consensus 221 ~~~t~~~~p---v~~G~iS~deL~~Ri 244 (256)
T TIGR02739 221 NPKSQKMSP---LAYGFISQDELKERI 244 (256)
T ss_pred ECCCCcEEE---EeeccCCHHHHHHHH
Confidence 3 22221 235566666665544
No 169
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.19 E-value=6.7e-06 Score=50.07 Aligned_cols=52 Identities=17% Similarity=0.473 Sum_probs=39.9
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccE
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPN 83 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~ 83 (121)
|.+|+.++|++|+++..+|++.+.+|.++++..++... .++....+..+.|.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~---~el~~~~~~~~~~~ 52 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSK---EELKKWLEKSGLPL 52 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccH---HHHHHHHHHcCCCH
Confidence 45799999999999999999999999999998776543 34444444445553
No 170
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=3e-06 Score=51.68 Aligned_cols=73 Identities=15% Similarity=0.344 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhhhCCCCEEE-Eee--------CCCcchHHHHHHHHHh----CCCceEEEecCCCCcHHHH---HHHH
Q 033336 10 KEELEIALNKAKEIVSSNPVVV-FSK--------TYCGYCTTVKELLKQL----GTSFKVVELDIESDGSKIQ---AALA 73 (121)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~v~i-f~a--------~~C~~C~~~~~~l~~~----~~~~~~~~v~~~~~~~~~~---~~~~ 73 (121)
.+++++.++... +++.+++ |++ +|||.|.++.|++.+. ..+..++.+.+.+. +.|. ..+.
T Consensus 12 ~e~~~~~~~~~~---n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r-p~Wk~p~n~FR 87 (128)
T KOG3425|consen 12 YESFEETLKNVE---NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR-PYWKDPANPFR 87 (128)
T ss_pred HHHHHHHHHHHh---CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC-CcccCCCCccc
Confidence 455555555554 4555766 776 8999999999988653 33456666665431 1111 2344
Q ss_pred HHhCC-CCccEEEE
Q 033336 74 EWTGQ-RTVPNVFI 86 (121)
Q Consensus 74 ~~~~v-~~~P~i~~ 86 (121)
...++ .++||++.
T Consensus 88 ~d~~~lt~vPTLlr 101 (128)
T KOG3425|consen 88 KDPGILTAVPTLLR 101 (128)
T ss_pred cCCCceeecceeeE
Confidence 44555 88999865
No 171
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.15 E-value=9.4e-06 Score=48.98 Aligned_cols=49 Identities=8% Similarity=0.224 Sum_probs=38.6
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTG 77 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 77 (121)
|.+|+.|+|+.|+++..+|++.+.+|.++++..++...+.-..+.+..|
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 4579999999999999999999999999999877655443334444444
No 172
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.15 E-value=6.6e-06 Score=56.69 Aligned_cols=93 Identities=8% Similarity=0.119 Sum_probs=58.1
Q ss_pred HHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcH------HHHHHHHHHhCCCCccEEEE-
Q 033336 16 ALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGS------KIQAALAEWTGQRTVPNVFI- 86 (121)
Q Consensus 16 ~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~------~~~~~~~~~~~v~~~P~i~~- 86 (121)
..+.++.+-+...+++||.+.||+|+++.|+++.+..+ +.++.|+.|.... ......+..+|+..+|++|+
T Consensus 134 ~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 134 QRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred HHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 34445555567777889999999999999999887655 4555555543110 00133557889999998754
Q ss_pred C---CeeecChHHHHHHHhCCCcHHHHH
Q 033336 87 G---GKHIGGCDTVVEKHQGGKLVPLLR 111 (121)
Q Consensus 87 ~---g~~~~~~~~~~~~~~~~~l~~~l~ 111 (121)
+ ++..- -..|.++.++|.+-|.
T Consensus 214 ~~~t~~~~p---v~~G~iS~deL~~Ri~ 238 (248)
T PRK13703 214 DPKSGSVRP---LSYGFITQDDLAKRFL 238 (248)
T ss_pred ECCCCcEEE---EeeccCCHHHHHHHHH
Confidence 3 23221 2355666666655443
No 173
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.14 E-value=6.1e-06 Score=51.61 Aligned_cols=38 Identities=26% Similarity=0.287 Sum_probs=26.6
Q ss_pred CCCEEE-Ee-eCCCcchHHHHHHHHHhC-----CCceEEEecCCC
Q 033336 26 SNPVVV-FS-KTYCGYCTTVKELLKQLG-----TSFKVVELDIES 63 (121)
Q Consensus 26 ~~~v~i-f~-a~~C~~C~~~~~~l~~~~-----~~~~~~~v~~~~ 63 (121)
++.+++ || +.|||.|....+.+.++. ..+.++.|..+.
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~ 67 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDS 67 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 566666 88 589999998877765432 236777777654
No 174
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.13 E-value=1.7e-05 Score=48.80 Aligned_cols=60 Identities=10% Similarity=0.370 Sum_probs=34.2
Q ss_pred CCCEEE-Eee-------CCCcchHHHHHHHHHh----CCCceEEEecCCCCcHHHH---HHHHH--HhCCCCccEEEE
Q 033336 26 SNPVVV-FSK-------TYCGYCTTVKELLKQL----GTSFKVVELDIESDGSKIQ---AALAE--WTGQRTVPNVFI 86 (121)
Q Consensus 26 ~~~v~i-f~a-------~~C~~C~~~~~~l~~~----~~~~~~~~v~~~~~~~~~~---~~~~~--~~~v~~~P~i~~ 86 (121)
++++++ |++ +|||.|.++.|.+++. .....++.|.+... ..+. ..+.. .+++.++||++.
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r-~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDR-PEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---H-HHHC-TTSHHHH--CC---SSSEEEE
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCH-HHhCCCCCCceEcceeeeeecceEEE
Confidence 455655 765 7999999999988652 33456666655431 1111 23444 588999999865
No 175
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.13 E-value=8.5e-06 Score=53.74 Aligned_cols=37 Identities=14% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCCCE-EE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecC
Q 033336 25 SSNPV-VV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDI 61 (121)
Q Consensus 25 ~~~~v-~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~ 61 (121)
.++++ ++ +||+|||+|....|.|.++.. .+.++.|+.
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~ 82 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPC 82 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEec
Confidence 35554 33 799999999998887765532 377777764
No 176
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.12 E-value=4.5e-06 Score=51.27 Aligned_cols=49 Identities=10% Similarity=0.329 Sum_probs=36.9
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTG 77 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 77 (121)
+.+|+.++|++|+++..+|++.+.+|.++++..++...+.-..+....|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 3579999999999999999999999999998776544332233444444
No 177
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.06 E-value=6.4e-05 Score=44.18 Aligned_cols=63 Identities=17% Similarity=0.301 Sum_probs=52.3
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
..|++|++++-+|...+.+|+++.++..... +.+.+......+|++..+|..+..+..+..+.
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p----~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL 82 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP----EDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL 82 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCC----HHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence 6899999999999999999999999976542 44667777789999988998888777776664
No 178
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.05 E-value=1.9e-05 Score=49.45 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=32.9
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCc
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDG 65 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~ 65 (121)
+.+|+.++|++|+++..+|++.+.+|.++++..++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~ 38 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLT 38 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhh
Confidence 5679999999999999999999999999998776543
No 179
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=98.03 E-value=0.00018 Score=42.95 Aligned_cols=80 Identities=20% Similarity=0.385 Sum_probs=54.3
Q ss_pred EEEEeeCCCcc------hHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC---------CCCccEEEECCeeecC
Q 033336 29 VVVFSKTYCGY------CTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTG---------QRTVPNVFIGGKHIGG 93 (121)
Q Consensus 29 v~if~a~~C~~------C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------v~~~P~i~~~g~~~~~ 93 (121)
|.+|+++--+. |+++..+|+...++|..++|..+ ++.+..+.+..| ..-.|.||.+++.+|.
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~---e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD---EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT----HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC---HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 45577665544 46677788999999998888884 344555665552 3344689999999999
Q ss_pred hHHHHHHHhCCCcHHHHH
Q 033336 94 CDTVVEKHQGGKLVPLLR 111 (121)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~ 111 (121)
++++..+...++|.++|+
T Consensus 80 ye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 80 YEDFEEANENGELEEFLK 97 (99)
T ss_dssp HHHHHHHHCTT-HHHHHT
T ss_pred HHHHHHHHhhCHHHHHhC
Confidence 999999999999988875
No 180
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.02 E-value=0.00012 Score=41.08 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=55.2
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
+.+|+.+.|++|++++-.++..+.+|+.+.++..... ...+.+.+......+|++..+|..+.+...+..+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL 73 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL 73 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 3457788899999999999999999999888864321 11244666777889999988888888777777664
No 181
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.01 E-value=5.9e-06 Score=52.04 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=28.5
Q ss_pred CCCCEEE-EeeCC-CcchHHHHHHHHHhCC---CceEEEecCCC
Q 033336 25 SSNPVVV-FSKTY-CGYCTTVKELLKQLGT---SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~a~~-C~~C~~~~~~l~~~~~---~~~~~~v~~~~ 63 (121)
.++++++ ||++| |++|....+.|.++.. .+.++.|+.+.
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~ 68 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL 68 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 3556666 99998 6999999888865433 46777777754
No 182
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=97.99 E-value=0.00016 Score=40.41 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=53.4
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
+.+||.+-|+.|++.+-.++..+.+|+.+.++.+ ...+.+........+|++..+|..+.++..+..+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 4567878899999999999999999999988762 12234555555678999988998888877777664
No 183
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.98 E-value=2.1e-05 Score=48.25 Aligned_cols=83 Identities=14% Similarity=0.184 Sum_probs=57.6
Q ss_pred CCCCEEE-EeeC----CCcchHHHH---HHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EE---CCe--e
Q 033336 25 SSNPVVV-FSKT----YCGYCTTVK---ELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FI---GGK--H 90 (121)
Q Consensus 25 ~~~~v~i-f~a~----~C~~C~~~~---~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~---~g~--~ 90 (121)
+.+.++| ++++ ||.+|+... .+.+-++..+.....|+.... -.+++..+++.++|++ ++ +++ .
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~e---g~~la~~l~~~~~P~~~~l~~~~~~~~v 92 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPE---GYRVSQALRERTYPFLAMIMLKDNRMTI 92 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChH---HHHHHHHhCCCCCCEEEEEEecCCceEE
Confidence 3555666 9998 888887662 233445667888888887542 2568889999999985 55 332 2
Q ss_pred ecChHHHHHHHhCCCcHHHHHhc
Q 033336 91 IGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
+. ++.|..+.++|...|+..
T Consensus 93 v~---~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 93 VG---RLEGLIQPEDLINRLTFI 112 (116)
T ss_pred EE---EEeCCCCHHHHHHHHHHH
Confidence 33 577788888888877654
No 184
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=97.98 E-value=0.00012 Score=51.10 Aligned_cols=80 Identities=20% Similarity=0.477 Sum_probs=60.7
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH------
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH------ 101 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~------ 101 (121)
.+++|-...||+|.+++.+|+-.+.+|.+|+||... ++++ +...++.+|.+.+.|+....+.-++...
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-----r~eI-k~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~ 163 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-----RQEI-KWSSYKKVPILLIRGEQMVDSSVIISLLATYLQD 163 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-----hhhc-cccccccccEEEeccceechhHHHHHHHHHHhcc
Confidence 566788899999999999999999999999999875 2334 4446789999988888776665555443
Q ss_pred hCCCcHHHHHhc
Q 033336 102 QGGKLVPLLRDA 113 (121)
Q Consensus 102 ~~~~l~~~l~~~ 113 (121)
+...|.++++-.
T Consensus 164 ~~q~l~eiiq~y 175 (370)
T KOG3029|consen 164 KRQDLGEIIQMY 175 (370)
T ss_pred CCCCHHHHHHhc
Confidence 455566666554
No 185
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.97 E-value=5.9e-07 Score=60.68 Aligned_cols=87 Identities=15% Similarity=0.348 Sum_probs=58.9
Q ss_pred HHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCC-----ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE--CCee
Q 033336 18 NKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTS-----FKVVELDIESDGSKIQAALAEWTGQRTVPNVFI--GGKH 90 (121)
Q Consensus 18 ~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~--~g~~ 90 (121)
++....+++.-.+.|++||||.|+...+.++++..- +.+.+||...+ +.+.-+|=+...|||+. +|..
T Consensus 32 enw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~n-----pgLsGRF~vtaLptIYHvkDGeF 106 (248)
T KOG0913|consen 32 ENWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTN-----PGLSGRFLVTALPTIYHVKDGEF 106 (248)
T ss_pred cchhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEec-----cccceeeEEEecceEEEeecccc
Confidence 344444455556679999999999999999886542 44444554432 34666777889999964 5543
Q ss_pred ecChHHHHHHHhCCCcHHHHHhc
Q 033336 91 IGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
- ++.+.++.+.+...++..
T Consensus 107 r----rysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 107 R----RYSGARDKNDFISFEEHR 125 (248)
T ss_pred c----cccCcccchhHHHHHHhh
Confidence 2 677777777777766543
No 186
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=97.96 E-value=0.00022 Score=39.88 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=51.3
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCC-CCccEEEECCeeecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQ-RTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v-~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+|+.+.||+|.+++-.++..+.+|+.+.++.... ...+.+.... ..+|++..+|..+.++..+..+.
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~----~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL 70 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNK----SELLLASNPVHKKIPVLLHNGKPICESLIIVEYI 70 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccC----CHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence 35778899999999999999999999888776432 1334444443 68999988888888776666654
No 187
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.95 E-value=4.8e-05 Score=46.55 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=32.7
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCc
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDG 65 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~ 65 (121)
+.+|+.++|+.|+++...|++.+.+|.++++..++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~ 38 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLT 38 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcch
Confidence 5679999999999999999999999999998776544
No 188
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.95 E-value=3.4e-05 Score=50.16 Aligned_cols=39 Identities=15% Similarity=0.212 Sum_probs=29.4
Q ss_pred CCCCEEE-EeeCC-CcchHHHHHHHHHhCC---CceEEEecCCC
Q 033336 25 SSNPVVV-FSKTY-CGYCTTVKELLKQLGT---SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~a~~-C~~C~~~~~~l~~~~~---~~~~~~v~~~~ 63 (121)
.++.+++ ||++| ||+|....+.|.++.. .+.++.|+.+.
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~ 86 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL 86 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 4566666 99999 9999998888866543 36777787764
No 189
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.92 E-value=1.3e-05 Score=50.48 Aligned_cols=58 Identities=26% Similarity=0.356 Sum_probs=35.6
Q ss_pred CCCCEEE-E-eeCCCcchHHHHHHHHHhCC-----CceEEEecCCCCcHHHHHHHHHHhCCCCccEEE
Q 033336 25 SSNPVVV-F-SKTYCGYCTTVKELLKQLGT-----SFKVVELDIESDGSKIQAALAEWTGQRTVPNVF 85 (121)
Q Consensus 25 ~~~~v~i-f-~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~ 85 (121)
.++++++ | +++|||.|+...+.|.++.. .+.++-|+.+.. +... .+.+.++. .+|.+.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~-~~~~-~~~~~~~~-~~p~~~ 86 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP-EKLE-AFDKGKFL-PFPVYA 86 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH-HHHH-HHHHhcCC-CCeEEE
Confidence 3445444 4 69999999999888866543 367888887653 2222 34444444 356443
No 190
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=97.91 E-value=0.0001 Score=41.04 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=46.1
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
++||+|.+++-.++..+.+|+.+.++... ......+|++..+|..+.++..+..+..
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 69999999999999999999998887532 2234589999999998888777776643
No 191
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.91 E-value=0.00011 Score=48.90 Aligned_cols=66 Identities=24% Similarity=0.484 Sum_probs=41.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCC--Cc------------------------------------HHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIES--DG------------------------------------SKI 68 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~--~~------------------------------------~~~ 68 (121)
+++|+.+.||+|+++.+.+.+.... +.++.+.... .+ -+.
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~~~~i~~ 160 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASCDNPVAA 160 (197)
T ss_pred EEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccccCchHHH
Confidence 3449999999999999999753222 3333332211 00 011
Q ss_pred HHHHHHHhCCCCccEEEE-CCeeecCh
Q 033336 69 QAALAEWTGQRTVPNVFI-GGKHIGGC 94 (121)
Q Consensus 69 ~~~~~~~~~v~~~P~i~~-~g~~~~~~ 94 (121)
...+.+.+|+.++|++++ +|..+.|+
T Consensus 161 ~~~l~~~~gi~gtPtii~~~G~~~~G~ 187 (197)
T cd03020 161 NLALGRQLGVNGTPTIVLADGRVVPGA 187 (197)
T ss_pred HHHHHHHcCCCcccEEEECCCeEecCC
Confidence 234566789999999877 58877654
No 192
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.90 E-value=1.3e-05 Score=50.74 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=25.9
Q ss_pred CCEEE-Ee-eCCCcchHHHHHHHHHhC-----CCceEEEecCCC
Q 033336 27 NPVVV-FS-KTYCGYCTTVKELLKQLG-----TSFKVVELDIES 63 (121)
Q Consensus 27 ~~v~i-f~-a~~C~~C~~~~~~l~~~~-----~~~~~~~v~~~~ 63 (121)
+.+++ || ++||+.|....+.+.++. ..+.++.|+.+.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 55555 76 899999998877776542 236777777654
No 193
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.90 E-value=0.00011 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=19.2
Q ss_pred HHhCCCCccEEEECCeeecChHHHH
Q 033336 74 EWTGQRTVPNVFIGGKHIGGCDTVV 98 (121)
Q Consensus 74 ~~~~v~~~P~i~~~g~~~~~~~~~~ 98 (121)
..+|+.++||++++|+.+.|..+..
T Consensus 123 ~~~gi~gtPt~~v~g~~~~G~~~~~ 147 (154)
T cd03023 123 RALGITGTPAFIIGDTVIPGAVPAD 147 (154)
T ss_pred HHcCCCcCCeEEECCEEecCCCCHH
Confidence 3468999999999999887654433
No 194
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=97.90 E-value=6.3e-05 Score=47.20 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=33.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGS 66 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~ 66 (121)
+.+|+.++|+.|+++..+|++.+.+|.++++..++...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~ 39 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTK 39 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCH
Confidence 56799999999999999999999999999998766543
No 195
>PRK12559 transcriptional regulator Spx; Provisional
Probab=97.89 E-value=7.6e-05 Score=46.79 Aligned_cols=38 Identities=18% Similarity=0.348 Sum_probs=33.6
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGS 66 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~ 66 (121)
|.+|+.++|+.|+++..+|++.+.+|.++++..++...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~ 39 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTV 39 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCH
Confidence 56799999999999999999999999999998766543
No 196
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.89 E-value=0.00022 Score=39.69 Aligned_cols=67 Identities=16% Similarity=0.249 Sum_probs=50.2
Q ss_pred EEEeeCCCcchHHHHHHHHH--hCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-CCeeecChHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQ--LGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEK 100 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~ 100 (121)
.+|+.+.|++|.+++-.+.. .+.+|+.+.++..... +++.+......+|++.. +|..+.++..+..+
T Consensus 2 ~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 2 KLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDD----ESLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred EEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCC----hHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 45888999999999999999 7788988888754322 34555667789999875 67777766666554
No 197
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.84 E-value=0.00015 Score=41.90 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=40.2
Q ss_pred EEEeeCCCcchHHHHHHHHHh----CCC--ceEEEecCCCCc--------------------HHH-----HHHHHHHhCC
Q 033336 30 VVFSKTYCGYCTTVKELLKQL----GTS--FKVVELDIESDG--------------------SKI-----QAALAEWTGQ 78 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~----~~~--~~~~~v~~~~~~--------------------~~~-----~~~~~~~~~v 78 (121)
.+|+.+.||+|..+.+.++++ ..+ +.++.+...... .+. ........|+
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 81 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALGV 81 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcCC
Confidence 459999999999999999876 233 444444443320 011 1234556899
Q ss_pred CCccEEEECCe
Q 033336 79 RTVPNVFIGGK 89 (121)
Q Consensus 79 ~~~P~i~~~g~ 89 (121)
.++|+++++|.
T Consensus 82 ~g~Pt~v~~~~ 92 (98)
T cd02972 82 TGTPTFVVNGE 92 (98)
T ss_pred CCCCEEEECCE
Confidence 99999999883
No 198
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=0.0001 Score=41.30 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=45.1
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHH-------HHH--HHHHhCCCCccEEEEC-Ceeec
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKI-------QAA--LAEWTGQRTVPNVFIG-GKHIG 92 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~-------~~~--~~~~~~v~~~P~i~~~-g~~~~ 92 (121)
++|++.-||.|..+...|++++.+|++|++-.....-+- .++ -.+..|.-++|.+..+ |+.+-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 779999999999999999999999999998765311100 011 1234577799998764 55553
No 199
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=97.80 E-value=0.00027 Score=39.10 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=52.1
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
+|+.+.|+.|.+++-.++..+.+|+.+.++.... .....++.+......+|++..+|..+.++..+..+
T Consensus 3 L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 3 LYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKG-EQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EecCCCCcchHHHHHHHHHcCCCCeEEEecCccC-CcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 4667788999999999999999999988886432 11124466666778999998888888776666654
No 200
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.78 E-value=0.0001 Score=46.11 Aligned_cols=53 Identities=30% Similarity=0.486 Sum_probs=32.1
Q ss_pred CCCCEEE-EeeCCCcc-hHHHHHHHHHh----CC----CceEEEecCCCC--cHHHHHHHHHHhC
Q 033336 25 SSNPVVV-FSKTYCGY-CTTVKELLKQL----GT----SFKVVELDIESD--GSKIQAALAEWTG 77 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~-C~~~~~~l~~~----~~----~~~~~~v~~~~~--~~~~~~~~~~~~~ 77 (121)
.++.+++ ||++||++ |....+.+.++ .. ++.++.|+.++. ..+......+.++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~~~~ 85 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAKAFG 85 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3555555 99999998 99877777543 22 367777776542 2222333445544
No 201
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.77 E-value=0.00037 Score=39.10 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=54.1
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+|+.+.++.|+++.-.++..+.+|+.+.++.... +...+.+........+|++..+|..+.++..+..+.
T Consensus 2 ~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 2 KLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKG-EQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred EEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCC-CcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 45888899999999999999999999988886432 111234666667789999988888887776666654
No 202
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.76 E-value=7.6e-05 Score=49.36 Aligned_cols=65 Identities=17% Similarity=0.300 Sum_probs=39.3
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHh----CC-CceEEEecCC-------CCcHHHHHHHHH-HhCCCCccEE---EEC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQL----GT-SFKVVELDIE-------SDGSKIQAALAE-WTGQRTVPNV---FIG 87 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~----~~-~~~~~~v~~~-------~~~~~~~~~~~~-~~~v~~~P~i---~~~ 87 (121)
.++.++| |||+||+.|.+ .+.|+++ +. .+.++.+..+ ...+++.. +++ .+|+. +|.+ -++
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~-f~~~~~g~~-Fpv~~k~dvn 100 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT-YCRTTWGVT-FPMFSKIEVN 100 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH-HHHHccCCC-ceeEEEEccC
Confidence 3566666 99999999975 4455544 32 3777777653 12233443 443 56664 7765 357
Q ss_pred Ceeec
Q 033336 88 GKHIG 92 (121)
Q Consensus 88 g~~~~ 92 (121)
|....
T Consensus 101 G~~~~ 105 (183)
T PRK10606 101 GEGRH 105 (183)
T ss_pred CCCCC
Confidence 76654
No 203
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=97.74 E-value=0.00017 Score=44.04 Aligned_cols=39 Identities=23% Similarity=0.351 Sum_probs=34.1
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSK 67 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~ 67 (121)
|.+|+.|.|+.|+++..+|++.+.+|.++++-.++...+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~ 40 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAE 40 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHH
Confidence 678999999999999999999999999999887665443
No 204
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.71 E-value=1.8e-05 Score=55.17 Aligned_cols=84 Identities=20% Similarity=0.297 Sum_probs=56.4
Q ss_pred CEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecCh---HHHH
Q 033336 28 PVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGC---DTVV 98 (121)
Q Consensus 28 ~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~---~~~~ 98 (121)
.|++ ||.+.++.|+.+...|..++.. ..|+++..... . +...|....+|+| |.+|..++.+ .+..
T Consensus 148 ~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~-----~-~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~ 221 (265)
T PF02114_consen 148 WVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKC-----P-ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLL 221 (265)
T ss_dssp EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGC-----C-TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT
T ss_pred EEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhcc-----C-cccCCcccCCCEEEEEECCEEEEeEEehHHhc
Confidence 4666 9999999999999999887654 67888877643 1 5567888999996 6788766532 2221
Q ss_pred -HHHhCCCcHHHHHhcCCcc
Q 033336 99 -EKHQGGKLVPLLRDAGALA 117 (121)
Q Consensus 99 -~~~~~~~l~~~l~~~~~~~ 117 (121)
......+|+.+|..+|++.
T Consensus 222 g~df~~~dlE~~L~~~G~l~ 241 (265)
T PF02114_consen 222 GDDFFTEDLEAFLIEYGVLP 241 (265)
T ss_dssp -TT--HHHHHHHHHTTTSSS
T ss_pred CCCCCHHHHHHHHHHcCCCC
Confidence 1234557888888888653
No 205
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.68 E-value=0.00071 Score=45.37 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=56.1
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
+.+|+.++|++|++++-.+++.+.+|+.+.++...- .+++.+......+|++..+|..+.++..|..+.
T Consensus 11 ~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~----~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 11 MTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNL----PQDLIDLNPYQSVPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred eEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccC----CHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHH
Confidence 556888999999999999999999999999987432 245666667789999988998888887777664
No 206
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.65 E-value=0.00016 Score=44.15 Aligned_cols=40 Identities=25% Similarity=0.554 Sum_probs=29.5
Q ss_pred CCCCEEE-EeeC-CCcchHHHHHHHHHhC----C-CceEEEecCCCC
Q 033336 25 SSNPVVV-FSKT-YCGYCTTVKELLKQLG----T-SFKVVELDIESD 64 (121)
Q Consensus 25 ~~~~v~i-f~a~-~C~~C~~~~~~l~~~~----~-~~~~~~v~~~~~ 64 (121)
.++++++ ||++ |||.|....+.|.++. . .+.++-|+.+..
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 4666666 9998 9999998887776543 2 377888887653
No 207
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=97.63 E-value=0.00052 Score=38.08 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=51.5
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+|+.+.|+.|++++-.++..+.+|+.+.++..... ...+........+|++..+|..+.++..+..+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~---~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 2 KLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWP---ELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred EEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhh---hhhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 456778899999999999999999999888764211 122445556679999988888887766666553
No 208
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=97.59 E-value=0.00025 Score=39.37 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-CCeeecChHHHHHHHh
Q 033336 36 YCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 36 ~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~~~ 102 (121)
+||+|++++=.++..+.++.+..+........-...+.+..+...+|++.. +|..+.++..+..+..
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 599999999999999999887777432211111145777777889999987 7899988877776653
No 209
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00043 Score=42.56 Aligned_cols=50 Identities=10% Similarity=0.290 Sum_probs=38.0
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTG 77 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 77 (121)
.|.+|+.|.|..|+.++.+|++.+.+|.++++-..+...+.-..+.+..|
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 36779999999999999999999999999988876654433333333333
No 210
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=97.58 E-value=0.00032 Score=40.25 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=49.1
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC-CeeecChHHHHHHHh
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEKHQ 102 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~-g~~~~~~~~~~~~~~ 102 (121)
+||++|.+++-.|...+.+|+.+.++.... +.....+ ...+...+|++..+ |..+.++..+..+..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 789999999999999999999988886532 1112223 33456789999888 888888777776653
No 211
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.57 E-value=0.00082 Score=37.66 Aligned_cols=69 Identities=9% Similarity=0.020 Sum_probs=53.0
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-CCeeecChHHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKH 101 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~~ 101 (121)
+|+.+.|+.|.+++-.++..+.+|+.+.++.... ...+++.+......+|++.. +|..+.+...+..+.
T Consensus 3 Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~--~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 3 LYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE--NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred EecCCCCccHHHHHHHHHHcCCceEEEecccccc--cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence 5778899999999999999999999999887531 11245666777889999987 487787666666554
No 212
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.56 E-value=7.8e-05 Score=49.28 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=61.0
Q ss_pred HHHHHHhhhCCCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCe
Q 033336 16 ALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGK 89 (121)
Q Consensus 16 ~~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~ 89 (121)
..+++.....+..|++ ||-|.-..|+-+..-|+.++.. -.|++||+... +-++.++++..+|++ |.+|.
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~-----PFlv~kL~IkVLP~v~l~k~g~ 148 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA-----PFLVTKLNIKVLPTVALFKNGK 148 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccC-----ceeeeeeeeeEeeeEEEEEcCE
Confidence 3455556656778888 9999999999999888887765 58999999886 789999999999996 67875
Q ss_pred ---eecChHHHH
Q 033336 90 ---HIGGCDTVV 98 (121)
Q Consensus 90 ---~~~~~~~~~ 98 (121)
.+.|+.++-
T Consensus 149 ~~D~iVGF~dLG 160 (211)
T KOG1672|consen 149 TVDYVVGFTDLG 160 (211)
T ss_pred EEEEEeeHhhcC
Confidence 344554443
No 213
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.53 E-value=0.0016 Score=36.20 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=52.6
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
.+|+.+.++.|.+++-.++..+.+|+.+.++.... +...+.+.+......+|++..+|..+.++..+..+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~-~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFG-GLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEeccccc-cccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 35778889999999999999999999988875322 11124455666778999998888888777666554
No 214
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=97.53 E-value=0.0019 Score=36.65 Aligned_cols=70 Identities=10% Similarity=0.186 Sum_probs=51.4
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC---CeeecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG---GKHIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~---g~~~~~~~~~~~~~ 101 (121)
.+|+.+ +++|++++-.++..+.+|+.+.++.... ....+++.+......+|++..+ |..+.++..+..+.
T Consensus 3 ~Ly~~~-~~~~~~v~~~l~~~gl~~~~~~~~~~~~-~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 3 TLYTHG-TPNGFKVSIMLEELGLPYEIHPVDISKG-EQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred EEEeCC-CCChHHHHHHHHHcCCCcEEEEecCcCC-cccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHH
Confidence 346555 4999999999999999999988886432 1112456666677899999876 77888777776654
No 215
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.51 E-value=3.7e-05 Score=51.53 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCE-EE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 27 NPV-VV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 27 ~~v-~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
+.+ ++ |+++|||.|....+.|.++.. .+.++.|+.+.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 444 44 999999999988777755432 25666776654
No 216
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.47 E-value=0.00013 Score=47.55 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=27.1
Q ss_pred CCCCEEE-Ee-eCCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 25 SSNPVVV-FS-KTYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~-a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
.++.+++ || ++||+.|....+.|.++.. .+.++.|+.+.
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 3556666 88 8999999998887755422 35666676654
No 217
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.45 E-value=0.00047 Score=42.92 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=27.6
Q ss_pred CCCCEEE-Ee-eCCCcchHHHHHHHHHhC-----CCceEEEecCCC
Q 033336 25 SSNPVVV-FS-KTYCGYCTTVKELLKQLG-----TSFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~-a~~C~~C~~~~~~l~~~~-----~~~~~~~v~~~~ 63 (121)
.++++++ || +.||+.|....+.+.++. ..+.++.|+.+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3555666 88 789999999888776543 236777777654
No 218
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.45 E-value=4.5e-05 Score=50.46 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=26.9
Q ss_pred CCCCEEE-Ee-eCCCcchHHHHHHHHHhC-----CCceEEEecCCC
Q 033336 25 SSNPVVV-FS-KTYCGYCTTVKELLKQLG-----TSFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~-a~~C~~C~~~~~~l~~~~-----~~~~~~~v~~~~ 63 (121)
.++.+++ || ++||+.|....+.|.+.. ..+.++.|+.+.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~ 75 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDT 75 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 4566666 88 999999998877775432 235666666654
No 219
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.44 E-value=0.00062 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=17.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHh
Q 033336 29 VVVFSKTYCGYCTTVKELLKQL 50 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~ 50 (121)
++.|+...||+|..+.+.+..+
T Consensus 19 i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 19 VIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred EEEEECCCCcchhhhhHHHHHH
Confidence 3449999999999998877544
No 220
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.40 E-value=0.00027 Score=48.98 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=17.6
Q ss_pred EEEEeeCCCcchHHHHHHHHHh
Q 033336 29 VVVFSKTYCGYCTTVKELLKQL 50 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~ 50 (121)
|++|..+.||+|+++.+.+..+
T Consensus 121 I~vFtDp~CpyC~kl~~~l~~~ 142 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQARPW 142 (251)
T ss_pred EEEEECCCChhHHHHHHHHHHH
Confidence 4449999999999998776543
No 221
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=97.40 E-value=0.00088 Score=40.93 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=37.7
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTG 77 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 77 (121)
|.+|+.+.|..|+++..+|++.+.+|.++++...+...+.-..+.+..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g 49 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLG 49 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcC
Confidence 3579999999999999999999999999998776654433334444444
No 222
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=97.39 E-value=0.0026 Score=35.62 Aligned_cols=56 Identities=13% Similarity=0.364 Sum_probs=44.4
Q ss_pred CCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 36 YCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 36 ~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
+||+|.+++-.++..+.+|+.+.++.. .......+|++..+|+.+.++..+..+..
T Consensus 16 ~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL~ 71 (75)
T cd03080 16 LSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHLE 71 (75)
T ss_pred CCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 689999999999999999988776642 23346789999889998888777776643
No 223
>PRK13191 putative peroxiredoxin; Provisional
Probab=97.37 E-value=4.1e-05 Score=51.84 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=27.5
Q ss_pred CCCCEE-E-EeeCCCcchHHHHHHHHHhCCC-----ceEEEecCCCC
Q 033336 25 SSNPVV-V-FSKTYCGYCTTVKELLKQLGTS-----FKVVELDIESD 64 (121)
Q Consensus 25 ~~~~v~-i-f~a~~C~~C~~~~~~l~~~~~~-----~~~~~v~~~~~ 64 (121)
.++.++ + |+++||+.|....+.|.+...+ +.++.++.+..
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~ 78 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSN 78 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 455444 3 8999999999887777654333 56777777653
No 224
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.37 E-value=0.00013 Score=48.45 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=27.1
Q ss_pred CCCCEEE-Ee-eCCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 25 SSNPVVV-FS-KTYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~-a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
.++.+++ || ++|||.|....+.|.+... .+.++.|+.+.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~ 75 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDT 75 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 3556666 88 9999999987776755433 25677777655
No 225
>PRK15113 glutathione S-transferase; Provisional
Probab=97.36 E-value=0.0026 Score=42.74 Aligned_cols=74 Identities=15% Similarity=0.339 Sum_probs=55.8
Q ss_pred CCEEEEeeC--CCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 27 NPVVVFSKT--YCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 27 ~~v~if~a~--~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
..+.+|+.+ .|++|.++.-.+.+.+.+|+.+.++.... +...+++.+......+|++..+|..+.++..+..+.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~-~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAG-EHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCc-cccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 345557765 69999999999999999999999987542 112245666777789999998998887776776653
No 226
>PRK10387 glutaredoxin 2; Provisional
Probab=97.35 E-value=0.0019 Score=43.00 Aligned_cols=68 Identities=13% Similarity=0.275 Sum_probs=50.8
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE-EECCeeecChHHHHHHHh
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV-FIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~~g~~~~~~~~~~~~~~ 102 (121)
.+|+.+.||+|.+++-.++..+.+|+.+.++.... ... ....+...+|++ ..+|..+.++..|..+..
T Consensus 2 ~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~----~~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~ 70 (210)
T PRK10387 2 KLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDE----ATP-IRMIGQKQVPILQKDDGSYMPESLDIVHYID 70 (210)
T ss_pred EEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCch----hhH-HHhcCCcccceEEecCCeEecCHHHHHHHHH
Confidence 45778889999999999999999999888765432 111 234456789998 467888888877776653
No 227
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.33 E-value=0.00017 Score=48.38 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=25.7
Q ss_pred CCCCEE-E-EeeCCCcchHHHHHHHHHhC-----CCceEEEecCCC
Q 033336 25 SSNPVV-V-FSKTYCGYCTTVKELLKQLG-----TSFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~-i-f~a~~C~~C~~~~~~l~~~~-----~~~~~~~v~~~~ 63 (121)
.++.++ + |+++|||.|....+.|.+.. ..+.++.|+.+.
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~ 71 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDS 71 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 355444 3 89999999998777665432 235666666654
No 228
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=97.33 E-value=0.001 Score=40.46 Aligned_cols=49 Identities=16% Similarity=0.237 Sum_probs=37.0
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTG 77 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 77 (121)
+.+|+.+.|+.|+++..+|++.+.+|.++++-..+...+.-..+.+..|
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~ 49 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLG 49 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcC
Confidence 3579999999999999999999999999998766544333333444444
No 229
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.00016 Score=48.72 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=43.7
Q ss_pred EE-EeeCCCcchHHHHHHHHHhCCC-----ceEEEecCCCCcHHHHHHHHHHhCC------CCccEE--EECCeeec
Q 033336 30 VV-FSKTYCGYCTTVKELLKQLGTS-----FKVVELDIESDGSKIQAALAEWTGQ------RTVPNV--FIGGKHIG 92 (121)
Q Consensus 30 ~i-f~a~~C~~C~~~~~~l~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~v------~~~P~i--~~~g~~~~ 92 (121)
+| |+|.|.|.|+...|++.++..+ ..+.+||...- +..+.+|++ +.+||+ |.+|+.+-
T Consensus 148 lIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf-----pd~a~kfris~s~~srQLPT~ilFq~gkE~~ 219 (265)
T KOG0914|consen 148 LIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF-----PDVAAKFRISLSPGSRQLPTYILFQKGKEVS 219 (265)
T ss_pred EEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC-----cChHHheeeccCcccccCCeEEEEccchhhh
Confidence 44 9999999999999999887665 58888888764 335555554 688985 55777654
No 230
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.25 E-value=0.0033 Score=42.21 Aligned_cols=67 Identities=12% Similarity=0.230 Sum_probs=50.0
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEE-ECCeeecChHHHHHHHh
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVF-IGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~-~~g~~~~~~~~~~~~~~ 102 (121)
+|+.+.||+|++++-.+...+.+|+.+.+..... ....+..+...+|++. .+|..+.++..+..+..
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-----~~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~ 69 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-----ETPIRMIGAKQVPILQKDDGRAMPESLDIVAYFD 69 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-----hhHHHhcCCCCcceEEeeCCeEeccHHHHHHHHH
Confidence 4677889999999999999999998877654332 1123444567899986 67888888877777654
No 231
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.23 E-value=0.0017 Score=41.34 Aligned_cols=39 Identities=18% Similarity=0.214 Sum_probs=26.0
Q ss_pred CCCCEEE-EeeC-CCcchHHHHHHHHHh----C-CCceEEEecCCC
Q 033336 25 SSNPVVV-FSKT-YCGYCTTVKELLKQL----G-TSFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~a~-~C~~C~~~~~~l~~~----~-~~~~~~~v~~~~ 63 (121)
+++.+++ ||++ ||+.|....+.+.++ . ..+.++.|+.+.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~ 74 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDK 74 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 4666666 8875 688898776655433 2 237777777764
No 232
>PRK10026 arsenate reductase; Provisional
Probab=97.22 E-value=0.0019 Score=40.97 Aligned_cols=39 Identities=13% Similarity=0.324 Sum_probs=34.0
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGS 66 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~ 66 (121)
.+.+|+.|.|..|+++..+|++.+.+|.++++-.++...
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~ 41 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTR 41 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCH
Confidence 467899999999999999999999999999987766443
No 233
>PLN02378 glutathione S-transferase DHAR1
Probab=97.21 E-value=0.0042 Score=41.78 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=51.6
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
.+||+|++++-.++..+.+|+.+.++..... +++.+......+|++..+|..+.++..+..+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~----~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKP----QWFLDISPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCC----HHHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 4599999999999999999999999885432 356667777899999888888887777776653
No 234
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.00056 Score=52.88 Aligned_cols=68 Identities=25% Similarity=0.473 Sum_probs=45.0
Q ss_pred hCCCCEEE-EeeCCCcchHHHHH-------HHHHhCCCceEEEecCCCCc--HHHH-HHHHHHhCCCCcc-EEEE--CCe
Q 033336 24 VSSNPVVV-FSKTYCGYCTTVKE-------LLKQLGTSFKVVELDIESDG--SKIQ-AALAEWTGQRTVP-NVFI--GGK 89 (121)
Q Consensus 24 ~~~~~v~i-f~a~~C~~C~~~~~-------~l~~~~~~~~~~~v~~~~~~--~~~~-~~~~~~~~v~~~P-~i~~--~g~ 89 (121)
-.+++|++ ...+||..|+.|.. +-+-++..|.-|+||.++.. +++- +......|..++| |+|+ +|+
T Consensus 41 ~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~k 120 (667)
T COG1331 41 EEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGK 120 (667)
T ss_pred HhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCc
Confidence 35789999 99999999998842 22446667999999976531 1111 2223345678999 4665 555
Q ss_pred ee
Q 033336 90 HI 91 (121)
Q Consensus 90 ~~ 91 (121)
++
T Consensus 121 PF 122 (667)
T COG1331 121 PF 122 (667)
T ss_pred ee
Confidence 54
No 235
>PRK10853 putative reductase; Provisional
Probab=97.17 E-value=0.0019 Score=39.71 Aligned_cols=49 Identities=12% Similarity=0.334 Sum_probs=36.6
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTG 77 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 77 (121)
+.+|+.+.|..|+++..+|++.+.+|.++++-..+...+.-..+....|
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELG 50 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcC
Confidence 5679999999999999999999999999998765544332223333434
No 236
>PRK13599 putative peroxiredoxin; Provisional
Probab=97.14 E-value=0.00027 Score=47.88 Aligned_cols=39 Identities=10% Similarity=0.209 Sum_probs=27.2
Q ss_pred CCCCE-EE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 25 SSNPV-VV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v-~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
.++.+ ++ |+++|||.|....+.|.++.. .+.++.|+.+.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~ 72 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQ 72 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 35554 45 999999999988777765432 35677777665
No 237
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.12 E-value=0.0061 Score=33.84 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=50.6
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
+||.+. +.|.+++-.++..+.+|+.+.++..... ....++.+......+|++..+|..+.++..+..+.
T Consensus 3 l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL 71 (76)
T cd03046 3 LYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGE-QAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYL 71 (76)
T ss_pred EEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCc-cCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence 466665 6788999999999999999888864211 11244556667789999988898888777776664
No 238
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.09 E-value=0.00078 Score=46.96 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=26.0
Q ss_pred CCCCEEE-Ee-eCCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 25 SSNPVVV-FS-KTYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~-a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
.++.+++ || ++|||.|....+.|.+... .+.++.|+.+.
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4555555 55 8999999987776654432 25667776654
No 239
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.08 E-value=0.0073 Score=33.76 Aligned_cols=69 Identities=14% Similarity=0.297 Sum_probs=49.5
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC-CeeecChHHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG-GKHIGGCDTVVEKH 101 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~-g~~~~~~~~~~~~~ 101 (121)
+|+.+.| .|.+++-.+...+.+|+++.++.... +....++.+......+|++..+ |..+.++..+..+.
T Consensus 3 Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 3 LYYSPGA-CSLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred EEeCCCC-chHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence 4555555 47788889999999999988887542 1112456677778899999876 77787777776654
No 240
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.07 E-value=0.0067 Score=41.75 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=53.4
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
+-||+|++++-.+...+.+|+++.+|..... +++.+......+|++..+|..+.++..+..+..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~----~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKP----EDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCC----HHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence 6799999999999999999999999986532 457677777899999889999988888877754
No 241
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.07 E-value=0.0036 Score=38.99 Aligned_cols=38 Identities=21% Similarity=0.286 Sum_probs=32.7
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCc
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDG 65 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~ 65 (121)
.+.+|+.|.|..|++++.+|++.+.+|.++++-.++..
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t 39 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWH 39 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcC
Confidence 35679999999999999999999999999998765543
No 242
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0016 Score=42.74 Aligned_cols=74 Identities=14% Similarity=0.354 Sum_probs=54.3
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+++++ ||.+.|.+=.+.. |.=.+.+|+++-||.-+..++...++.....-..+|++.++|..+..+-.+..+.
T Consensus 4 ~KpiLYSYWrSSCswRVRiA--LaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YL 78 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIA--LALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYL 78 (217)
T ss_pred ccchhhhhhcccchHHHHHH--HHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHH
Confidence 467777 8888887655544 4444568888888887765555556777766789999999999998766666554
No 243
>PRK15000 peroxidase; Provisional
Probab=97.03 E-value=0.00086 Score=44.92 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=27.5
Q ss_pred CCCCEEE-Eee-CCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 25 SSNPVVV-FSK-TYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~a-~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
+++.+++ ||+ .||+.|....+.|.++.. .+.++.|+.+.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~ 78 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDS 78 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4666666 998 599999988777755432 36677777764
No 244
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.99 E-value=0.0037 Score=38.70 Aligned_cols=60 Identities=23% Similarity=0.432 Sum_probs=43.5
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeee
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHI 91 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~ 91 (121)
..+++ |+..|-|.|..+..+|.+.... ..+.-|+.++ .+.+.+.|+....|++ |++++|+
T Consensus 24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdide-----V~~~~~~~~l~~p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDE-----VPDFVKMYELYDPPTVMFFFNNKHM 90 (142)
T ss_pred eEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecch-----hhhhhhhhcccCCceEEEEEcCceE
Confidence 34555 9999999999999888765433 3444455554 2568889999999984 6777665
No 245
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=96.99 E-value=0.0081 Score=42.01 Aligned_cols=63 Identities=16% Similarity=0.295 Sum_probs=50.1
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+||+|++++-.|++.+.+|+++.++..... +++.+......+|++..+|..+.++..+..+.
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~----~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL 133 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKP----EWFLKISPEGKVPVVKLDEKWVADSDVITQAL 133 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCC----HHHHhhCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 3599999999999999999999888875432 34555666789999988888887777776664
No 246
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.00029 Score=47.61 Aligned_cols=62 Identities=15% Similarity=0.305 Sum_probs=46.7
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeee
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHI 91 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~ 91 (121)
....+++ ||++||..|.++..++..++.. +.+++++.+. .+++...+.+..+|++ +..|+.+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~-----~~eis~~~~v~~vp~~~~~~~~~~v 83 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEE-----FPEISNLIAVEAVPYFVFFFLGEKV 83 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhh-----hhHHHHHHHHhcCceeeeeecchhh
Confidence 3445555 9999999999999988776554 6777777665 3779999999999985 3356544
No 247
>PLN02473 glutathione S-transferase
Probab=96.95 E-value=0.0086 Score=40.02 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=53.7
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+|+.+.|++|++++-.+.+.+.+|+.+.++.... +...++.........+|++..+|..+.++..+..+.
T Consensus 4 kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 4 KVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKL-EQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred EEecCCCCCchHHHHHHHHHcCCCceEEEecCccc-ccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHH
Confidence 45777889999999999999999999998886532 111234445566789999988998888777777654
No 248
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=96.94 E-value=0.0031 Score=39.68 Aligned_cols=62 Identities=21% Similarity=0.381 Sum_probs=44.0
Q ss_pred CCCCEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCC----CccEEEECCeeecC
Q 033336 25 SSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQR----TVPNVFIGGKHIGG 93 (121)
Q Consensus 25 ~~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~----~~P~i~~~g~~~~~ 93 (121)
....+++|+.|.||=|......++..+.++ ..+..++ ...+++++||+ +==|.+++|..+.|
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~V--k~~~~~d-----~~alK~~~gIp~e~~SCHT~VI~Gy~vEG 89 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEV--KVVETDD-----FLALKRRLGIPYEMQSCHTAVINGYYVEG 89 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEE--EEeecCc-----HHHHHHhcCCChhhccccEEEEcCEEEec
Confidence 355678899999999999999999665554 4444443 24577777764 44467899988864
No 249
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=96.93 E-value=0.012 Score=32.84 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=49.2
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
..|++|++++-.++..+.+|+.+.++..... ...++.+......+|++..+|..+.+...+..+
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~--~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPD--TRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCcc--ccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 5788999999999999999999888865421 124566666778999998899888877666654
No 250
>PHA03075 glutaredoxin-like protein; Provisional
Probab=96.92 E-value=0.0014 Score=39.88 Aligned_cols=35 Identities=26% Similarity=0.716 Sum_probs=30.9
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCC
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIE 62 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~ 62 (121)
.+++|+.|.|+-|+....+++++..+|++..||.-
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl 38 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVNIL 38 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEEee
Confidence 34559999999999999999999999999998864
No 251
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.74 E-value=0.015 Score=32.92 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=48.4
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHH--HhCCCCccEEEECCeeecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAE--WTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
.+||.+.++.|...+-.++..+.+|+.+.++... ++. .... ...-..+|++..+|..+.++..+..+.
T Consensus 3 ~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~---~~~-~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 3 VLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAE---DLE-KLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred EEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHH---HHH-hhccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 4677788889999999999999999998887532 111 1111 112458999988998888777776654
No 252
>PRK13189 peroxiredoxin; Provisional
Probab=96.71 E-value=0.0012 Score=45.02 Aligned_cols=39 Identities=13% Similarity=0.194 Sum_probs=25.5
Q ss_pred CCCCE-EE-EeeCCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 25 SSNPV-VV-FSKTYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v-~i-f~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
.++.+ ++ |+++||+.|....+.|.++.. .+.++.|+.+.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 45534 44 889999999987766654432 25666666654
No 253
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=96.62 E-value=0.0076 Score=36.43 Aligned_cols=47 Identities=15% Similarity=0.339 Sum_probs=31.4
Q ss_pred EeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCC
Q 033336 32 FSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQ 78 (121)
Q Consensus 32 f~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v 78 (121)
|+.+.|..|+++..+|++.+.+|.++++...+-..+.-..+.+..|.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~ 47 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGN 47 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTS
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcc
Confidence 67899999999999999999999999988765544433445555553
No 254
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=96.50 E-value=0.013 Score=39.00 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=52.1
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
+|+.+.|+.|.+++-++..++.+|+.+.++....+....+++.+...-..+|++..+|..+.++..+..+.
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHH
Confidence 35567899999999999999999998888752211111234556666789999988998888777776654
No 255
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.059 Score=36.97 Aligned_cols=72 Identities=25% Similarity=0.282 Sum_probs=54.0
Q ss_pred CCEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHh-CCCCccEEEECCeeecChHHHHHHHh
Q 033336 27 NPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWT-GQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 27 ~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
+.|.++..=.||+.++++=+++..+++|.++..|...- . +-+-+.. -...+|.+..||+.+.++-.+..+++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~K-s---~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiD 80 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNK-S---EWLLEKNPVHKKVPVLEHNGKPICESLIIVEYID 80 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCC-C---HHHHHhccccccCCEEEECCceehhhHHHHHHHH
Confidence 34555555569999999999999999999999998642 1 3333443 35789999999999887766666653
No 256
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.015 Score=38.31 Aligned_cols=67 Identities=13% Similarity=0.263 Sum_probs=48.2
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-CCeeecChHHHHHHHh
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~~~ 102 (121)
+|..+.||+|.+++-++--.+.+++..-+.-+.+ +.-.+..|...+|.+.. +|....++-+++.+..
T Consensus 3 LYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe-----~Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 3 LYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDE-----ETPIRMIGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred eeEeccChHHHHHHHHhhccCCChhhheeccCcc-----cChhhhhcccccceEEccccccchhhhHHHHHHH
Confidence 3556899999999999998888876655555443 12334558899999877 5777777767766643
No 257
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.014 Score=42.58 Aligned_cols=71 Identities=23% Similarity=0.360 Sum_probs=45.7
Q ss_pred HHHHHHHhhhCCCCEEE--EeeCCCcchHHHHHHHHH---hCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCe
Q 033336 15 IALNKAKEIVSSNPVVV--FSKTYCGYCTTVKELLKQ---LGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGK 89 (121)
Q Consensus 15 ~~~~~~~~~~~~~~v~i--f~a~~C~~C~~~~~~l~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~ 89 (121)
+..+.++.+ +.+.-+ |++=.|..|-.+-..|.- ++.+...+-++---- +.+... -++.++|++|.||+
T Consensus 106 ~vieqik~i--~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~F----q~Evea-r~IMaVPtvflnGe 178 (520)
T COG3634 106 DVIEQIKAI--DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALF----QDEVEA-RNIMAVPTVFLNGE 178 (520)
T ss_pred HHHHHHHhc--CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhh----HhHHHh-ccceecceEEEcch
Confidence 455555554 444444 888889999877666654 444455555554322 333433 38999999999998
Q ss_pred eec
Q 033336 90 HIG 92 (121)
Q Consensus 90 ~~~ 92 (121)
.++
T Consensus 179 ~fg 181 (520)
T COG3634 179 EFG 181 (520)
T ss_pred hhc
Confidence 876
No 258
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=96.05 E-value=0.082 Score=35.41 Aligned_cols=71 Identities=7% Similarity=0.216 Sum_probs=50.9
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-----CC--eeecChHHHHHHHh
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-----GG--KHIGGCDTVVEKHQ 102 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-----~g--~~~~~~~~~~~~~~ 102 (121)
.+|+.+ ++.|++++-++++++.+|+++.++.... +...+++.+......+|++.. +| ..+.++..|..+..
T Consensus 3 ~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 3 DLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred EEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 456665 6899999999999999999999887542 222245666777789999976 34 24677767766653
No 259
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.039 Score=36.83 Aligned_cols=70 Identities=13% Similarity=0.258 Sum_probs=54.2
Q ss_pred EEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCe-eecChHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGK-HIGGCDTVVEKH 101 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~-~~~~~~~~~~~~ 101 (121)
.+|+.+.+|+|.+++=.+.+++.+|+.+.|+... +...+++...+....+|++..+|. .+.++..|..+.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL 72 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYL 72 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHH
Confidence 3577777899999999999999999999999875 222356777777889999987654 677776666654
No 260
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.096 Score=35.35 Aligned_cols=61 Identities=20% Similarity=0.320 Sum_probs=47.8
Q ss_pred CCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 36 YCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 36 ~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
-||+||++.-.|...+..|.+..||+.... +.+....+-...|.+.++|+.+...+.+.+.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp----~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~ 80 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKP----EWFLDISPGGKPPVLKFDEKWVTDSDKIEEF 80 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCc----HHHHhhCCCCCCCeEEeCCceeccHHHHHHH
Confidence 599999998888877788888888887653 5577777888999999999877766555544
No 261
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=95.74 E-value=0.1 Score=31.49 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=40.6
Q ss_pred CCCCEEEE-eeCCCcchHHHHHHHHHh----CCCceEEEecCCCCcHHHHHHHHHHhCCC-CccEE--EECCeeec
Q 033336 25 SSNPVVVF-SKTYCGYCTTVKELLKQL----GTSFKVVELDIESDGSKIQAALAEWTGQR-TVPNV--FIGGKHIG 92 (121)
Q Consensus 25 ~~~~v~if-~a~~C~~C~~~~~~l~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~v~-~~P~i--~~~g~~~~ 92 (121)
..+++++| ..++||-...+...|++. ...+.++-+++-.. ..+.++++..+||. --|.+ +.+|+.+.
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~-R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~ 92 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEY-RPVSNAIAEDFGVKHESPQVILIKNGKVVW 92 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG-HHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC-chhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence 36677775 557799999888777653 22255555665543 56678899999984 88985 55898775
No 262
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.64 E-value=0.046 Score=37.12 Aligned_cols=87 Identities=22% Similarity=0.386 Sum_probs=60.2
Q ss_pred CCCCEEE-EeeCCCcchHHHHHHHHHhCCCceEEE---ecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHH-
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKELLKQLGTSFKVVE---LDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTV- 97 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~- 97 (121)
+...+++ .|-+.-+-|..+...+.=++.+|+.++ +-... -...+.|-...+|++ |.+|+.|+.+-.+
T Consensus 158 ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~------~gas~~F~~n~lP~LliYkgGeLIgNFv~va 231 (273)
T KOG3171|consen 158 KSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN------TGASDRFSLNVLPTLLIYKGGELIGNFVSVA 231 (273)
T ss_pred ceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc------ccchhhhcccCCceEEEeeCCchhHHHHHHH
Confidence 3445556 999999999999999988888864444 43332 335566777899995 5588888755322
Q ss_pred ---HHHHhCCCcHHHHHhcCCcc
Q 033336 98 ---VEKHQGGKLVPLLRDAGALA 117 (121)
Q Consensus 98 ---~~~~~~~~l~~~l~~~~~~~ 117 (121)
.......+|..+|+..+...
T Consensus 232 ~qlgedffa~dle~FL~e~gllp 254 (273)
T KOG3171|consen 232 EQLGEDFFAGDLESFLNEYGLLP 254 (273)
T ss_pred HHHhhhhhhhhHHHHHHHcCCCc
Confidence 33345778888888877654
No 263
>PRK11752 putative S-transferase; Provisional
Probab=95.60 E-value=0.15 Score=35.55 Aligned_cols=72 Identities=13% Similarity=0.210 Sum_probs=50.9
Q ss_pred CEEEEeeCCCcchHHHHHHHHHh------CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEEC----CeeecChHHH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQL------GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIG----GKHIGGCDTV 97 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~------~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~----g~~~~~~~~~ 97 (121)
++.+|+ .++++|++++-+++++ +.+|+.+.++.... +...+++.+......+|++..+ |..+.++..|
T Consensus 44 ~~~Ly~-~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~-~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 44 PLQLYS-LGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEG-DQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CeEEec-CCCCchHHHHHHHHHHHhccCCCCceEEEEecCccc-cccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHH
Confidence 455565 5699999999899886 77898888887542 1123456677777899999774 2467777677
Q ss_pred HHHH
Q 033336 98 VEKH 101 (121)
Q Consensus 98 ~~~~ 101 (121)
..+.
T Consensus 122 l~YL 125 (264)
T PRK11752 122 LLYL 125 (264)
T ss_pred HHHH
Confidence 6654
No 264
>PLN02395 glutathione S-transferase
Probab=95.55 E-value=0.15 Score=34.04 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=52.3
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
+.+|+.+.| .+++++-.+.+.+.+|+.+.++.... +...+++.+......+|++..+|..+.++..+..+..
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKG-EHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccC-CcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 455776665 47888888999999999988887432 1112456667777899999888888888777766643
No 265
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.099 Score=35.64 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=59.9
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
+.+|+.+.-++|+++.-.++.++.+++.+.+|.... ++..+++.+.+....+|++.-+|-.+.++..|..+..
T Consensus 3 ~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~g-e~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~ 75 (226)
T KOG0867|consen 3 LKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKG-EQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLA 75 (226)
T ss_pred ceEeecCCCcchHHHHHHHHHcCCceeEEEeecccc-ccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHH
Confidence 456888888999999999999999999998887654 4455778888888999999999988888777766643
No 266
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=95.38 E-value=0.02 Score=36.75 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCCEEE--EeeCCCcchHHH-HHHHHHhCCC-----c-eEEEecCCCCcHHHHHHHHHHhCC
Q 033336 25 SSNPVVV--FSKTYCGYCTTV-KELLKQLGTS-----F-KVVELDIESDGSKIQAALAEWTGQ 78 (121)
Q Consensus 25 ~~~~v~i--f~a~~C~~C~~~-~~~l~~~~~~-----~-~~~~v~~~~~~~~~~~~~~~~~~v 78 (121)
.++++++ |.+.|||.|... .+.|.+...+ . .++-++.+.. ...+..++.++.
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~--~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDP--FVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCH--HHHHHHHHhhCC
Confidence 3445544 677999999876 5555443222 3 3677777653 223445556555
No 267
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=95.36 E-value=0.011 Score=37.61 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=16.7
Q ss_pred HHHhCCCCccEEEECCeeecC
Q 033336 73 AEWTGQRTVPNVFIGGKHIGG 93 (121)
Q Consensus 73 ~~~~~v~~~P~i~~~g~~~~~ 93 (121)
...+|+.++|++++||+.+.+
T Consensus 129 ~~~~~i~~tPt~~inG~~~~~ 149 (162)
T PF13462_consen 129 ARQLGITGTPTFFINGKYVVG 149 (162)
T ss_dssp HHHHT-SSSSEEEETTCEEET
T ss_pred HHHcCCccccEEEECCEEeCC
Confidence 445799999999999998864
No 268
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=95.33 E-value=0.044 Score=34.25 Aligned_cols=59 Identities=22% Similarity=0.381 Sum_probs=39.6
Q ss_pred CCEEE-EeeCCCcchHHHHHHHHHhCC----CceEEEecCCCCcHHHHHHHHHHhCCCCccE-E--EECCeee
Q 033336 27 NPVVV-FSKTYCGYCTTVKELLKQLGT----SFKVVELDIESDGSKIQAALAEWTGQRTVPN-V--FIGGKHI 91 (121)
Q Consensus 27 ~~v~i-f~a~~C~~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~-i--~~~g~~~ 91 (121)
+.+++ |+.+|-|.|.++..+|.+... -..++-||.+.- +.+.+.|... .|. + |++++++
T Consensus 21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~V-----pdfn~~yel~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 21 RVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEV-----PDFNQMYELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTT-----HCCHHHTTS--SSEEEEEEETTEEE
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccc-----hhhhcccccC-CCeEEEEEecCeEE
Confidence 34455 999999999999888865433 245566666653 5577888888 884 3 5587766
No 269
>PRK10357 putative glutathione S-transferase; Provisional
Probab=95.20 E-value=0.16 Score=33.55 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=49.9
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-CCeeecChHHHHHHHh
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~~~ 102 (121)
+|+.+-|+.+++++-.++..+.+|+.+.++..... +.+.+......+|++.. +|..+.++..|..+..
T Consensus 3 Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~----~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~ 71 (202)
T PRK10357 3 LIGSYTSPFVRKISILLLEKGITFEFVNELPYNAD----NGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIE 71 (202)
T ss_pred eecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCc----hhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHH
Confidence 57777899999999999999999999888764331 23444456679999974 6777776666665543
No 270
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=95.19 E-value=0.28 Score=27.84 Aligned_cols=71 Identities=11% Similarity=0.111 Sum_probs=46.5
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHH-HHHHHHHHh----CCCCccEEEECCeeecChHHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSK-IQAALAEWT----GQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~----~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
++|-+--+.|+..+-+++..+.+|+.+.++....... -.+.....+ ....+|++..+|..+..+..+..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 3333344788888889999999999999887542100 011111111 3468999988898888777777665
No 271
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.15 E-value=0.056 Score=36.06 Aligned_cols=39 Identities=18% Similarity=0.208 Sum_probs=24.5
Q ss_pred CCCCEEE-Eee-CCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 25 SSNPVVV-FSK-TYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 25 ~~~~v~i-f~a-~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
.++.+++ ||+ +||+.|....+.|.++.. .+.++.|+.+.
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 3555555 885 789999876665544322 35667776664
No 272
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=94.61 E-value=0.4 Score=26.74 Aligned_cols=66 Identities=18% Similarity=0.259 Sum_probs=47.9
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCC-CCccEEEEC-CeeecChHHHHHHH
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQ-RTVPNVFIG-GKHIGGCDTVVEKH 101 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v-~~~P~i~~~-g~~~~~~~~~~~~~ 101 (121)
++-+.|..++-.++..+.+|+.+.++....... .+++.+.... ..+|++..+ |..+.++..+..+.
T Consensus 7 ~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~-~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YL 74 (76)
T PF02798_consen 7 NGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHK-SPEFLAINPMFGKVPALEDGDGFVLTESNAILRYL 74 (76)
T ss_dssp SSSTTTHHHHHHHHHTT--EEEEEEETTTTGGG-SHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHH
T ss_pred CCCCchHHHHHHHHHhcccCceEEEeccccccc-chhhhhcccccceeeEEEECCCCEEEcHHHHHHHh
Confidence 344588888989999999999999997554221 1556666667 899999998 99998877766553
No 273
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.53 E-value=0.32 Score=37.53 Aligned_cols=70 Identities=10% Similarity=0.163 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHhhhCCCCE--EEEeeCCCcchHHHHHHHHHhCC---CceEEEecCCCCcHHHHHHHHHHhCCCCccE
Q 033336 9 SKEELEIALNKAKEIVSSNPV--VVFSKTYCGYCTTVKELLKQLGT---SFKVVELDIESDGSKIQAALAEWTGQRTVPN 83 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v--~if~a~~C~~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~ 83 (121)
+.+..++..+.+.. + .++| .+|+.+.|..|..++.+++++.. .+.+...+...+ .++++.|++...|+
T Consensus 350 ~~~~~~~l~~~~~~-l-~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-----~~~~~~~~v~~~P~ 422 (555)
T TIGR03143 350 DDSLRQQLVGIFGR-L-ENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-----PESETLPKITKLPT 422 (555)
T ss_pred CHHHHHHHHHHHHh-c-CCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-----hhhHhhcCCCcCCE
Confidence 33333444444443 2 3443 33888899999999999987543 455555555443 56788999999999
Q ss_pred EE
Q 033336 84 VF 85 (121)
Q Consensus 84 i~ 85 (121)
+.
T Consensus 423 ~~ 424 (555)
T TIGR03143 423 VA 424 (555)
T ss_pred EE
Confidence 73
No 274
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=94.23 E-value=0.069 Score=35.85 Aligned_cols=21 Identities=33% Similarity=0.428 Sum_probs=17.7
Q ss_pred HHHhCCCCccEEEECCeeecC
Q 033336 73 AEWTGQRTVPNVFIGGKHIGG 93 (121)
Q Consensus 73 ~~~~~v~~~P~i~~~g~~~~~ 93 (121)
.+.+|+.++|++++||+++.+
T Consensus 160 a~~~gI~gtPtfiInGky~v~ 180 (207)
T PRK10954 160 AADLQLRGVPAMFVNGKYMVN 180 (207)
T ss_pred HHHcCCCCCCEEEECCEEEEc
Confidence 456899999999999998754
No 275
>PRK10542 glutathionine S-transferase; Provisional
Probab=94.23 E-value=0.28 Score=32.28 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=46.9
Q ss_pred EEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-CCeeecChHHHHHHH
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKH 101 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~~ 101 (121)
+||.+ .+.+.+..-.+++.+.+|+.+.++.........+++.+......+|++.. +|..+.++..+..+.
T Consensus 3 l~~~~-~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 3 LFYKP-GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred eeecc-cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHH
Confidence 45544 23466667788999999999888875321111244666666789999976 677888777776654
No 276
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=93.29 E-value=0.19 Score=32.77 Aligned_cols=28 Identities=25% Similarity=0.215 Sum_probs=22.4
Q ss_pred HHHHhCCCCccEEEECCeeecChHHHHH
Q 033336 72 LAEWTGQRTVPNVFIGGKHIGGCDTVVE 99 (121)
Q Consensus 72 ~~~~~~v~~~P~i~~~g~~~~~~~~~~~ 99 (121)
.+...|+.++|+++++|+.+.|.+++..
T Consensus 159 ~a~~~gi~gvPtfvv~g~~~~G~~~l~~ 186 (192)
T cd03022 159 EAIARGVFGVPTFVVDGEMFWGQDRLDM 186 (192)
T ss_pred HHHHcCCCcCCeEEECCeeecccccHHH
Confidence 3456799999999999998887766543
No 277
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=92.52 E-value=0.31 Score=33.55 Aligned_cols=58 Identities=24% Similarity=0.388 Sum_probs=38.3
Q ss_pred EeeCCCcchHHHHHHHHHhCCCceEEEecCC---------------CCcHHHHHHHHHHhCCCCccE--EEECCe
Q 033336 32 FSKTYCGYCTTVKELLKQLGTSFKVVELDIE---------------SDGSKIQAALAEWTGQRTVPN--VFIGGK 89 (121)
Q Consensus 32 f~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~---------------~~~~~~~~~~~~~~~v~~~P~--i~~~g~ 89 (121)
|++..|..|-.+...|.++..+-.++.+.-. ....+=+....+.++..+++| .++||.
T Consensus 48 fTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr 122 (261)
T COG5429 48 FTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGR 122 (261)
T ss_pred eecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeech
Confidence 9999999999999999998877333333211 111122344666777776655 788885
No 278
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.41 E-value=0.2 Score=31.65 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=13.6
Q ss_pred EEEeeCCCcchHHHHHHH
Q 033336 30 VVFSKTYCGYCTTVKELL 47 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l 47 (121)
++|....||+|..+.+.+
T Consensus 17 ~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 17 TEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp EEEE-TTSHHHHHHHHHH
T ss_pred EEEECCCCHhHHHHHHHH
Confidence 339999999999886655
No 279
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=92.36 E-value=1.4 Score=25.82 Aligned_cols=61 Identities=21% Similarity=0.388 Sum_probs=28.4
Q ss_pred EEeeC-CCcchHH----------HHHHHHHhC--CCceEEEecC--CCCcHHHHHHHHHHh--CCCCccEEEECCeeec
Q 033336 31 VFSKT-YCGYCTT----------VKELLKQLG--TSFKVVELDI--ESDGSKIQAALAEWT--GQRTVPNVFIGGKHIG 92 (121)
Q Consensus 31 if~a~-~C~~C~~----------~~~~l~~~~--~~~~~~~v~~--~~~~~~~~~~~~~~~--~v~~~P~i~~~g~~~~ 92 (121)
+|+|. -|+.|.. +.+.|.+.. .+|.+.-+|. ....+ ..++++++. .-.-+|.+.++|+.++
T Consensus 2 VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~-~~~~~a~~I~ede~fYPlV~i~~eiV~ 79 (93)
T PF07315_consen 2 VYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPEND-HDQQFAERILEDELFYPLVVINDEIVA 79 (93)
T ss_dssp EEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----H-HHHHHHHHHHTTSS-SSEEEETTEEEE
T ss_pred cccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccH-HHHHHHHHHHhcccccceEEECCEEEe
Confidence 45663 4888843 234444432 2355544554 43322 233344432 2357999999999885
No 280
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=91.90 E-value=0.72 Score=28.08 Aligned_cols=49 Identities=22% Similarity=0.515 Sum_probs=35.8
Q ss_pred CCcchHHHHHHHHH---hCCCceEEEecCCCCcHHHHHHHHHHhC--CCCccEEEECC
Q 033336 36 YCGYCTTVKELLKQ---LGTSFKVVELDIESDGSKIQAALAEWTG--QRTVPNVFIGG 88 (121)
Q Consensus 36 ~C~~C~~~~~~l~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~--v~~~P~i~~~g 88 (121)
.||+|..+.-+|.. +...+++..|+..... ..+....| .++.|++++.+
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR----~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPR----QAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCch----HHHHHHhChhccCCCEEEeCC
Confidence 49999999888865 4556888888887663 44555555 57999987753
No 281
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=91.58 E-value=0.47 Score=32.02 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=54.5
Q ss_pred HHHHhhhCCCCEEE-EeeCCCcchHHHHHHHHHhCCCc---eEEEecCCCCcHHHHHHHHHHhCCCCccEEEE--CCeee
Q 033336 18 NKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGTSF---KVVELDIESDGSKIQAALAEWTGQRTVPNVFI--GGKHI 91 (121)
Q Consensus 18 ~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~--~g~~~ 91 (121)
.....+.++-.|++ .|...-|.|.-....|.+++..| .||++-... +...|.-...||+|+ .|...
T Consensus 103 ~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~--------cIpNYPe~nlPTl~VY~~G~lk 174 (240)
T KOG3170|consen 103 KEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATT--------CIPNYPESNLPTLLVYHHGALK 174 (240)
T ss_pred HHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccc--------ccCCCcccCCCeEEEeecchHH
Confidence 33444445667777 99999999999999999999885 455544332 445667788999744 45333
Q ss_pred c---ChHHHHHH-HhCCCcHHHHHhcC
Q 033336 92 G---GCDTVVEK-HQGGKLVPLLRDAG 114 (121)
Q Consensus 92 ~---~~~~~~~~-~~~~~l~~~l~~~~ 114 (121)
+ |.-.+.|. .+.+++..+|-+++
T Consensus 175 ~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 175 KQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred hheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 2 11111111 13445566665555
No 282
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=90.79 E-value=0.95 Score=27.97 Aligned_cols=50 Identities=22% Similarity=0.494 Sum_probs=37.1
Q ss_pred CCCcchH-----------HHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeec
Q 033336 35 TYCGYCT-----------TVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIG 92 (121)
Q Consensus 35 ~~C~~C~-----------~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~ 92 (121)
..|+.|. .+++.|..++.++.+-++.+.. .+++..+ -.-|+|-+||..+.
T Consensus 13 ~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~------~~~~~~~--~~S~~I~inG~piE 73 (120)
T PF10865_consen 13 KTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDE------EEFARQP--LESPTIRINGRPIE 73 (120)
T ss_pred CcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECCh------HHHhhcc--cCCCeeeECCEehh
Confidence 3799984 4566777788888787777765 3466555 67899999999874
No 283
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=90.55 E-value=0.9 Score=27.22 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=40.7
Q ss_pred EEeeCCCcchHHHHHHHHHhCC--CceEEEecCCCCcHHHHHHHHHHhCCC--Ccc---EEEECCe-eecChHHHHHHHh
Q 033336 31 VFSKTYCGYCTTVKELLKQLGT--SFKVVELDIESDGSKIQAALAEWTGQR--TVP---NVFIGGK-HIGGCDTVVEKHQ 102 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~v~--~~P---~i~~~g~-~~~~~~~~~~~~~ 102 (121)
+||...||.|......+..... .+.++.+..... ..+...+++. ... .+..+|+ ...|.+.+.....
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPD-----QALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhh-----hhHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 4789999999999999988865 367766633321 2223334432 122 2223676 7777766655543
No 284
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=90.54 E-value=1.3 Score=30.12 Aligned_cols=59 Identities=27% Similarity=0.422 Sum_probs=42.9
Q ss_pred CCCEEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeee
Q 033336 26 SNPVVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHI 91 (121)
Q Consensus 26 ~~~v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~ 91 (121)
+..|-||.-..|-.|...-..+++.+-- +.+++-... ....-+.++-++|.+|++|+.+
T Consensus 10 ~~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p-------~f~~~~~~V~SvP~Vf~DGel~ 70 (265)
T COG5494 10 EMEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELP-------PFLAFEKGVISVPSVFIDGELV 70 (265)
T ss_pred heEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCC-------hHHHhhcceeecceEEEcCeEE
Confidence 4456778889999999988888886654 555554443 2344455789999999999865
No 285
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=90.51 E-value=0.14 Score=33.74 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=15.6
Q ss_pred HHHHhCCCCccEEEECCee
Q 033336 72 LAEWTGQRTVPNVFIGGKH 90 (121)
Q Consensus 72 ~~~~~~v~~~P~i~~~g~~ 90 (121)
.+...|+.++|+++++|+.
T Consensus 167 ~a~~~gv~G~Pt~vv~g~~ 185 (201)
T cd03024 167 RARQLGISGVPFFVFNGKY 185 (201)
T ss_pred HHHHCCCCcCCEEEECCeE
Confidence 4556799999999999874
No 286
>PTZ00057 glutathione s-transferase; Provisional
Probab=89.72 E-value=4.3 Score=26.90 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=48.9
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHH--HHHH--HHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQ--AALA--EWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~--~~~~--~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
+.++|.+-.+.|..++=.|+..+.+|+.+.++... ++.. ++.. ....-..+|++..+|..+.++..+..+.
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~--~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENG--DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEeccccc--hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 55677677888999999999999999888664321 1110 1111 2345578999999998888877776654
No 287
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=89.53 E-value=0.64 Score=30.24 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=20.2
Q ss_pred HHHHhCCCCccEEEECCe-eecChHHH
Q 033336 72 LAEWTGQRTVPNVFIGGK-HIGGCDTV 97 (121)
Q Consensus 72 ~~~~~~v~~~P~i~~~g~-~~~~~~~~ 97 (121)
.+..+|+.++|+++++|+ .+.|.+++
T Consensus 159 ~a~~~gv~GvP~~vv~g~~~~~G~~~~ 185 (193)
T PF01323_consen 159 EARQLGVFGVPTFVVNGKYRFFGADRL 185 (193)
T ss_dssp HHHHTTCSSSSEEEETTTEEEESCSSH
T ss_pred HHHHcCCcccCEEEECCEEEEECCCCH
Confidence 355689999999999998 67665444
No 288
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=87.82 E-value=0.51 Score=31.81 Aligned_cols=59 Identities=24% Similarity=0.480 Sum_probs=31.7
Q ss_pred EEeeCCCcchHHHHHHHHHhCCC--ceEEEecCC---------CCc----HHHHHHHHHHhCCC--CccEEEECCe
Q 033336 31 VFSKTYCGYCTTVKELLKQLGTS--FKVVELDIE---------SDG----SKIQAALAEWTGQR--TVPNVFIGGK 89 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~---------~~~----~~~~~~~~~~~~v~--~~P~i~~~g~ 89 (121)
+|++..|+.|-.+...|.++..+ +.....-++ +-+ .+-+...+..++.. .+|.+++||.
T Consensus 4 LFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~ 79 (202)
T PF06764_consen 4 LFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR 79 (202)
T ss_dssp EEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT
T ss_pred EecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe
Confidence 49999999999999999887544 322222222 111 11123344555543 5799999984
No 289
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=87.54 E-value=3.3 Score=22.92 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=40.9
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
+.+|.|-++.-.++-.+.+|+++..+-.. ......+|.+..+|+.+.++..+..+..
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n~~-----------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNNPW-----------RSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCCCC-----------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence 55799999999999988888776433211 1123459999899999998877776543
No 290
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.43 E-value=0.49 Score=32.29 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=23.9
Q ss_pred HHHHhCCCCccEEEECCeeecChHHHHHHHhCCCcHHHHHh
Q 033336 72 LAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRD 112 (121)
Q Consensus 72 ~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l~~~l~~ 112 (121)
+...+|+.++|++|++|+.+.|.. +..+|.+.|+.
T Consensus 207 ~a~~~gv~gTPt~~v~~~~~~g~~------~~~~l~~~i~~ 241 (244)
T COG1651 207 LAQQLGVNGTPTFIVNGKLVPGLP------DLDELKAIIDE 241 (244)
T ss_pred HHHhcCCCcCCeEEECCeeecCCC------CHHHHHHHHHH
Confidence 455689999999999998666442 23445555544
No 291
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.64 E-value=6.5 Score=26.65 Aligned_cols=69 Identities=14% Similarity=0.185 Sum_probs=54.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKH 101 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~ 101 (121)
..+.|-+..|.|...+-+|.-.+.+|+...+..... + ..+.....-..+|++-++|..+..+..+.++.
T Consensus 4 ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w-~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 4 YKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---W-EELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred eEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---h-hhhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 456777899999999999999999999988887652 1 23555566778999999999998877776654
No 292
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=86.51 E-value=4.1 Score=22.85 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=40.9
Q ss_pred CCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHh
Q 033336 35 TYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQ 102 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~ 102 (121)
+..+.|-++.-.++.++.+|+.+.+.... .. .....+|.+..+|+.+.++..+..+..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~-------~~---~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE-------FM---SPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc-------cc---CCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 34567889999999999999887542211 01 112579999889999988777776543
No 293
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.18 E-value=0.44 Score=32.63 Aligned_cols=37 Identities=30% Similarity=0.282 Sum_probs=24.9
Q ss_pred HHHHhCCCCccEEEECCeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 72 LAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 72 ~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
.++..||+++|+++++|+.. +.|..+.+.|...|.+.
T Consensus 176 ~A~e~gI~gVP~fv~d~~~~-----V~Gaq~~~v~~~al~~~ 212 (225)
T COG2761 176 AAQEMGIRGVPTFVFDGKYA-----VSGAQPYDVLEDALRQL 212 (225)
T ss_pred HHHHCCCccCceEEEcCcEe-----ecCCCCHHHHHHHHHHH
Confidence 35678999999998865443 34555666666666554
No 294
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=86.01 E-value=0.96 Score=30.54 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.2
Q ss_pred HHHHHHhCCCCccEEEE
Q 033336 70 AALAEWTGQRTVPNVFI 86 (121)
Q Consensus 70 ~~~~~~~~v~~~P~i~~ 86 (121)
+.+.+.|+|..+|++++
T Consensus 152 P~lF~~F~I~~VPafVv 168 (212)
T PRK13730 152 PTLFSQYGIRSVPALVV 168 (212)
T ss_pred HHHHHhcCCccccEEEE
Confidence 56788999999999755
No 295
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.57 E-value=5.6 Score=23.52 Aligned_cols=65 Identities=20% Similarity=0.340 Sum_probs=35.8
Q ss_pred CEEEEeeCC-CcchHHH----------HHHHHHh--CCCceEEEecC-CCCcHHHHHHHHHHhC--CCCccEEEECCeee
Q 033336 28 PVVVFSKTY-CGYCTTV----------KELLKQL--GTSFKVVELDI-ESDGSKIQAALAEWTG--QRTVPNVFIGGKHI 91 (121)
Q Consensus 28 ~v~if~a~~-C~~C~~~----------~~~l~~~--~~~~~~~~v~~-~~~~~~~~~~~~~~~~--v~~~P~i~~~g~~~ 91 (121)
.+.+|+|.. |..|..+ .+.+++. +.+|.+.-+|+ .+..++...+++.+.- -.-+|.|.++|+.+
T Consensus 6 ~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiV 85 (106)
T COG4837 6 KLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIV 85 (106)
T ss_pred EEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEe
Confidence 455588754 8888432 3344443 23355555554 3333444444554432 24789999998877
Q ss_pred c
Q 033336 92 G 92 (121)
Q Consensus 92 ~ 92 (121)
.
T Consensus 86 a 86 (106)
T COG4837 86 A 86 (106)
T ss_pred e
Confidence 4
No 296
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=85.05 E-value=0.69 Score=30.98 Aligned_cols=19 Identities=32% Similarity=0.653 Sum_probs=15.0
Q ss_pred EEEEeeCCCcchHHHHHHH
Q 033336 29 VVVFSKTYCGYCTTVKELL 47 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l 47 (121)
|+.|+...||+|..+.+.+
T Consensus 41 VvEffdy~CphC~~~~~~l 59 (207)
T PRK10954 41 VLEFFSFYCPHCYQFEEVY 59 (207)
T ss_pred EEEEeCCCCccHHHhcccc
Confidence 4449999999999987643
No 297
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=84.77 E-value=1.2 Score=28.88 Aligned_cols=39 Identities=28% Similarity=0.503 Sum_probs=23.5
Q ss_pred CCCEEE-Eee-CCCcchHHH----HHHHHHhCC-CceEEEecCCCC
Q 033336 26 SNPVVV-FSK-TYCGYCTTV----KELLKQLGT-SFKVVELDIESD 64 (121)
Q Consensus 26 ~~~v~i-f~a-~~C~~C~~~----~~~l~~~~~-~~~~~~v~~~~~ 64 (121)
+++|++ ||- .++|-|-.. +..+.++.. ...++.|+.++.
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~ 75 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSP 75 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCH
Confidence 556666 553 778888544 344444433 367778887763
No 298
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=84.33 E-value=0.24 Score=35.34 Aligned_cols=67 Identities=12% Similarity=0.262 Sum_probs=39.0
Q ss_pred HHHHHhhhCC---CCEEE-EeeCCCcchHHHHHHHHHhCCCce---EEEecCCCCcHHHHHHHHHHhCCCCccEE-EEC
Q 033336 17 LNKAKEIVSS---NPVVV-FSKTYCGYCTTVKELLKQLGTSFK---VVELDIESDGSKIQAALAEWTGQRTVPNV-FIG 87 (121)
Q Consensus 17 ~~~~~~~~~~---~~v~i-f~a~~C~~C~~~~~~l~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~v~~~P~i-~~~ 87 (121)
++.+.+.+.+ ..+-. ||++|||..+..+|.++-...-|. ...++... ........||+.+.|++ +.+
T Consensus 64 l~~l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~----~lpsv~s~~~~~~~ps~~~~n 138 (319)
T KOG2640|consen 64 LQVLLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQ----ALPSVFSSYGIHSEPSNLMLN 138 (319)
T ss_pred hhHHHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHh----hcccchhccccccCCcceeec
Confidence 3344444433 34544 999999999988887754433332 22222211 12346677899999986 444
No 299
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=83.73 E-value=7.6 Score=23.57 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=44.6
Q ss_pred cccCCChHHHHHHHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCCc-eEEEecCCCCcHHHHHHHHHHhCCCCcc
Q 033336 4 FQSKISKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSF-KVVELDIESDGSKIQAALAEWTGQRTVP 82 (121)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~v~~~P 82 (121)
.+.+++...+.......... +..+++ -.---+.-......+.++..+- ....+.++ +.+.++|++..+|
T Consensus 4 vS~SMP~~~L~~l~~~a~~~--~~~~V~-RG~~~g~~~~t~~~~~~l~~~~~~~~~v~Id-------P~~F~~y~I~~VP 73 (113)
T PF09673_consen 4 VSFSMPDASLRNLLKQAERA--GVVVVF-RGFPDGSFKPTAKAIQELLRKDDPCPGVQID-------PRLFRQYNITAVP 73 (113)
T ss_pred EECCCCHHHHHHHHHHHHhC--CcEEEE-ECCCCCCHHHHHHHHHHHhhccCCCcceeEC-------hhHHhhCCceEcC
Confidence 45677888888888777765 334444 2211124444444555554332 11355555 3588899999999
Q ss_pred EEEE-CC
Q 033336 83 NVFI-GG 88 (121)
Q Consensus 83 ~i~~-~g 88 (121)
++++ ++
T Consensus 74 a~V~~~~ 80 (113)
T PF09673_consen 74 AFVVVKD 80 (113)
T ss_pred EEEEEcC
Confidence 9744 45
No 300
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=83.51 E-value=3.1 Score=31.30 Aligned_cols=82 Identities=12% Similarity=0.206 Sum_probs=48.6
Q ss_pred CCCCEEE-EeeCCCcchHHHHH-HHH------HhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEE-E--CCeeecC
Q 033336 25 SSNPVVV-FSKTYCGYCTTVKE-LLK------QLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVF-I--GGKHIGG 93 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~~-~l~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~-~--~g~~~~~ 93 (121)
.++.++| |.+.--...+.+.. .+. .+...|.-++|...... -..+...|.+..+|.+| + .|..+.
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~a---a~qFs~IYp~v~vPs~ffIg~sGtpLe- 92 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVA---ATQFSAIYPYVSVPSIFFIGFSGTPLE- 92 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchh---hhhhhhhcccccccceeeecCCCceeE-
Confidence 4555555 88866666666652 221 12233677777776532 24588999999999874 4 466554
Q ss_pred hHHHHHHHhCCCcHHHHHh
Q 033336 94 CDTVVEKHQGGKLVPLLRD 112 (121)
Q Consensus 94 ~~~~~~~~~~~~l~~~l~~ 112 (121)
.+.++...++|..-|++
T Consensus 93 --vitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 93 --VITGFVTADELASSIEK 109 (506)
T ss_pred --EeeccccHHHHHHHHHH
Confidence 44445455555554444
No 301
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=82.09 E-value=3.5 Score=24.93 Aligned_cols=62 Identities=24% Similarity=0.308 Sum_probs=34.8
Q ss_pred CCCEEEEeeCCC---cchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeec
Q 033336 26 SNPVVVFSKTYC---GYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIG 92 (121)
Q Consensus 26 ~~~v~if~a~~C---~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~ 92 (121)
....++|.+.-| +-+..+.=++-++-+. +...-+. ......+...||+..+|++ +.+|+.+|
T Consensus 26 ~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~-----~~~e~~L~~r~gv~~~PaLvf~R~g~~lG 96 (107)
T PF07449_consen 26 PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA-----RAAERALAARFGVRRWPALVFFRDGRYLG 96 (107)
T ss_dssp CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE-----HHHHHHHHHHHT-TSSSEEEEEETTEEEE
T ss_pred CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC-----chhHHHHHHHhCCccCCeEEEEECCEEEE
Confidence 445555666544 4444433344444333 3322222 2224679999999999985 55888887
No 302
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=81.25 E-value=12 Score=25.29 Aligned_cols=55 Identities=13% Similarity=0.323 Sum_probs=37.4
Q ss_pred CCCCEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccE
Q 033336 25 SSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPN 83 (121)
Q Consensus 25 ~~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~ 83 (121)
....+.+|-...|+.|......+...+.++.+.-|+...+.. .+..+-....+|.
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~----~Ir~WA~~~~Idp 162 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDE----RIRQWANRHQIDP 162 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHH----HHHHHHHHcCCCH
Confidence 345566799999999999888887777778888888544433 3444433445553
No 303
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=80.09 E-value=1.1 Score=27.78 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=28.8
Q ss_pred HHHHhCCCceEEEecCCCC----cHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHHHhCCCcHHHH
Q 033336 46 LLKQLGTSFKVVELDIESD----GSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEKHQGGKLVPLL 110 (121)
Q Consensus 46 ~l~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~~~~~~l~~~l 110 (121)
.|++-+.++.-.++..++. ...+ .++-+..|...+|.++++|+.+. .-.+-+.++|.+|+
T Consensus 35 ~Lk~~gv~v~RyNL~~~P~aF~~n~~V-~~~L~~~G~e~LPitlVdGeiv~----~G~YPt~eEl~~~~ 98 (123)
T PF06953_consen 35 WLKEQGVEVERYNLAQNPQAFVENPEV-NQLLQTEGAEALPITLVDGEIVK----TGRYPTNEELAEWL 98 (123)
T ss_dssp HHHHTT-EEEEEETTT-TTHHHHSHHH-HHHHHHH-GGG-SEEEETTEEEE----ESS---HHHHHHHH
T ss_pred HHHhCCceEEEEccccCHHHHHhCHHH-HHHHHHcCcccCCEEEECCEEEE----ecCCCCHHHHHHHh
Confidence 3444444455555555442 1122 23444558999999999998662 12233444455554
No 304
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=79.18 E-value=1.3 Score=32.38 Aligned_cols=50 Identities=26% Similarity=0.291 Sum_probs=33.5
Q ss_pred ceEEEecCCCCcHHHHHHHHHHhCCCCccEE--EECCeeecChHHHHHHHhCCCcHHHHHh
Q 033336 54 FKVVELDIESDGSKIQAALAEWTGQRTVPNV--FIGGKHIGGCDTVVEKHQGGKLVPLLRD 112 (121)
Q Consensus 54 ~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i--~~~g~~~~~~~~~~~~~~~~~l~~~l~~ 112 (121)
+-+.-||..++ ..+++++|+...++| |.+|+.+. +-|.++.+.|..+|-.
T Consensus 91 igfg~VD~~Kd-----~klAKKLgv~E~~SiyVfkd~~~IE----ydG~~saDtLVeFl~d 142 (383)
T PF01216_consen 91 IGFGMVDSKKD-----AKLAKKLGVEEEGSIYVFKDGEVIE----YDGERSADTLVEFLLD 142 (383)
T ss_dssp EEEEEEETTTT-----HHHHHHHT--STTEEEEEETTEEEE----E-S--SHHHHHHHHHH
T ss_pred cceEEeccHHH-----HHHHHhcCccccCcEEEEECCcEEE----ecCccCHHHHHHHHHH
Confidence 77888888876 679999999999986 56787773 4566666666666543
No 305
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=78.97 E-value=9.1 Score=23.99 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=42.7
Q ss_pred cccCCChHHHHHHHHHHHhhhCCCCEEE--EeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCc
Q 033336 4 FQSKISKEELEIALNKAKEIVSSNPVVV--FSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTV 81 (121)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i--f~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~ 81 (121)
.+.+++.+.+.......+.. +.++++ |... .-+.....+.++..+-.-..+.++ +.+.+.|+|+.+
T Consensus 5 vS~SMP~~~Lk~l~~~a~~~--g~~~VlRG~~~~---~~~~T~~~i~~L~~~~~~~~v~Id-------P~lF~~f~I~~V 72 (130)
T TIGR02742 5 VSFSMPEPLLKQLLDQAEAL--GAPLVIRGLLDN---GFKATATRIQSLIKDGGKSGVQID-------PQWFKQFDITAV 72 (130)
T ss_pred EEcCCCHHHHHHHHHHHHHh--CCeEEEeCCCCC---CHHHHHHHHHHHHhcCCCCcEEEC-------hHHHhhcCceEc
Confidence 45677888888877777753 455555 4433 233334444444322111444455 458899999999
Q ss_pred cEEEE
Q 033336 82 PNVFI 86 (121)
Q Consensus 82 P~i~~ 86 (121)
|++++
T Consensus 73 Pa~V~ 77 (130)
T TIGR02742 73 PAFVV 77 (130)
T ss_pred CEEEE
Confidence 99744
No 306
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=78.44 E-value=2.3 Score=27.63 Aligned_cols=35 Identities=11% Similarity=0.319 Sum_probs=25.1
Q ss_pred EEEEeeCCCcchHHHHHHHHH----h-CCCceEEEecCCC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQ----L-GTSFKVVELDIES 63 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~----~-~~~~~~~~v~~~~ 63 (121)
|.+|+...||+|-.+.+.+.+ . +.++.+.-+....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 566999999999888776654 3 4556666666554
No 307
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=77.68 E-value=11 Score=25.72 Aligned_cols=35 Identities=26% Similarity=0.325 Sum_probs=23.5
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCC-----CceEEEecCCC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGT-----SFKVVELDIES 63 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~-----~~~~~~v~~~~ 63 (121)
+++|....||+|+...+.+++... ++.++.+....
T Consensus 88 v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~~f~~ 127 (244)
T COG1651 88 VVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREFPFLD 127 (244)
T ss_pred EEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEeecCC
Confidence 344999999999888888876432 25555555443
No 308
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=76.04 E-value=2.2 Score=29.80 Aligned_cols=19 Identities=26% Similarity=0.629 Sum_probs=13.7
Q ss_pred CCCEEE-EeeCCCcchHHHH
Q 033336 26 SNPVVV-FSKTYCGYCTTVK 44 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~ 44 (121)
+++.++ ..+.|||+|...+
T Consensus 58 Gk~~v~~igw~gCP~~A~~s 77 (249)
T PF06053_consen 58 GKPEVIFIGWEGCPYCAAES 77 (249)
T ss_pred CeeEEEEEecccCccchhhH
Confidence 444444 7789999998764
No 309
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=75.96 E-value=14 Score=23.53 Aligned_cols=52 Identities=17% Similarity=0.308 Sum_probs=35.0
Q ss_pred EEE-EeeCCCcchHHHHHHHHHhC----CCceEEEecCCCCcHHHHHHHHHHhCCC--CccEEE
Q 033336 29 VVV-FSKTYCGYCTTVKELLKQLG----TSFKVVELDIESDGSKIQAALAEWTGQR--TVPNVF 85 (121)
Q Consensus 29 v~i-f~a~~C~~C~~~~~~l~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~v~--~~P~i~ 85 (121)
+++ |........+.+...++.++ .++.++-++.... +.+...+|+. .+|++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~-----~~~~~~~~i~~~~~P~~v 156 (184)
T PF13848_consen 98 VLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDF-----PRLLKYFGIDEDDLPALV 156 (184)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTT-----HHHHHHTTTTTSSSSEEE
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHh-----HHHHHHcCCCCccCCEEE
Confidence 444 66555666777776665544 3477888887754 4467788887 999964
No 310
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.98 E-value=9.8 Score=27.53 Aligned_cols=52 Identities=15% Similarity=0.386 Sum_probs=34.5
Q ss_pred EEEee----CCCcchHHHHHHHHHhCC------------CceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE
Q 033336 30 VVFSK----TYCGYCTTVKELLKQLGT------------SFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI 86 (121)
Q Consensus 30 ~if~a----~~C~~C~~~~~~l~~~~~------------~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~ 86 (121)
++|.| ..|.-|..+...+.-+.. ++-+..||.++. +..-+.++...+|++++
T Consensus 65 vmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~-----p~~Fq~l~ln~~P~l~~ 132 (331)
T KOG2603|consen 65 VMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDES-----PQVFQQLNLNNVPHLVL 132 (331)
T ss_pred EEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecccc-----HHHHHHhcccCCCeEEE
Confidence 34877 569999888765543211 234556666553 55778889999999743
No 311
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=72.48 E-value=13 Score=24.19 Aligned_cols=53 Identities=26% Similarity=0.398 Sum_probs=26.8
Q ss_pred CCCCEEE-EeeCCCc-chHHHHHHH----H---HhCCCceEEEecCCC--CcHHHHHHHHHHhC
Q 033336 25 SSNPVVV-FSKTYCG-YCTTVKELL----K---QLGTSFKVVELDIES--DGSKIQAALAEWTG 77 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~-~C~~~~~~l----~---~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~ 77 (121)
.++.+++ |..+.|| .|......+ + +.+.++.++-|..++ +..+.-++.++.++
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~~~~ 114 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAKKFG 114 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHHCHT
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHHhcC
Confidence 4666666 8889995 465443322 2 234456666665554 33333334445554
No 312
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.04 E-value=19 Score=21.59 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=43.8
Q ss_pred EEEEeeCCCcchH------HHHHHHHHhCCCceEEEecCCCCcHHHH-----HHHHHHhCCCCccEEEECCeeecChHHH
Q 033336 29 VVVFSKTYCGYCT------TVKELLKQLGTSFKVVELDIESDGSKIQ-----AALAEWTGQRTVPNVFIGGKHIGGCDTV 97 (121)
Q Consensus 29 v~if~a~~C~~C~------~~~~~l~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~v~~~P~i~~~g~~~~~~~~~ 97 (121)
+.+|.++..|.-. ....+|+...+.+.-+++......+++. .+..-..|...-|.||-.+++.|+++.+
T Consensus 4 irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~F 83 (108)
T KOG4023|consen 4 IRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYELF 83 (108)
T ss_pred eEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHHH
Confidence 4457766554432 1222444444445555544443222221 1111123444445677777888988888
Q ss_pred HHHHhCCCcHHHHHh
Q 033336 98 VEKHQGGKLVPLLRD 112 (121)
Q Consensus 98 ~~~~~~~~l~~~l~~ 112 (121)
......+.|.+.|.-
T Consensus 84 ~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 84 FEAVEQNTLQEFLGL 98 (108)
T ss_pred HHHHHHHHHHHHHcc
Confidence 777666666666653
No 313
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=70.01 E-value=1.1 Score=27.75 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=37.4
Q ss_pred CceEEEecCCCCcHHHHHHHHHHhCC--CCccEE--EECC--eeecChHHHHHHHhCCCcHHHHHhcCCcc
Q 033336 53 SFKVVELDIESDGSKIQAALAEWTGQ--RTVPNV--FIGG--KHIGGCDTVVEKHQGGKLVPLLRDAGALA 117 (121)
Q Consensus 53 ~~~~~~v~~~~~~~~~~~~~~~~~~v--~~~P~i--~~~g--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 117 (121)
++-+-.|.+..++++.+.+++++|++ ..+|.+ |..| ..+. + ...+..+.+.|+.+++.++.+.
T Consensus 54 dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~LF~~~~~~pv~-~-p~~~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 54 DLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYLFVGDKEEPVR-Y-PFDGDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp SEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEEEESSTTSEEE-E--TCS-S-HHHHHHHHHHTSS--
T ss_pred ceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEEecCCCCCCcc-C-CccCCccHHHHHHHHHhCCCee
Confidence 46677777777888888999999998 679986 4432 2221 1 0123345567888888886543
No 314
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=69.69 E-value=3.6 Score=26.71 Aligned_cols=22 Identities=32% Similarity=0.782 Sum_probs=17.0
Q ss_pred EEEEeeCCCcchHHHHHHHHHh
Q 033336 29 VVVFSKTYCGYCTTVKELLKQL 50 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~ 50 (121)
|.+|+.+.||+|-.+.+.|+++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l 24 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKL 24 (193)
T ss_pred EEEEECCCCchhhCchHHHHHH
Confidence 5669999999998777766543
No 315
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=69.24 E-value=26 Score=22.20 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=43.6
Q ss_pred CCCCEEEEeeCCCcchHHHHHHHHHhCCC--ceEEEecCCCCcHHHHHHHHHHhCCCCc-c-EE-EE-CCeeecChHHHH
Q 033336 25 SSNPVVVFSKTYCGYCTTVKELLKQLGTS--FKVVELDIESDGSKIQAALAEWTGQRTV-P-NV-FI-GGKHIGGCDTVV 98 (121)
Q Consensus 25 ~~~~v~if~a~~C~~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~v~~~-P-~i-~~-~g~~~~~~~~~~ 98 (121)
+....+|+|..-|+.|......|.+.... +.+..+..... ..+-...|...- + ++ ++ +|+...+++...
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g-----~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~ 80 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG-----QALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAI 80 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh-----hhHHhhcCCChhhhheeeEecCCceEeccHHHH
Confidence 45567889999999999998888877554 66666555443 334455554322 2 22 33 567666655544
Q ss_pred H
Q 033336 99 E 99 (121)
Q Consensus 99 ~ 99 (121)
.
T Consensus 81 ~ 81 (137)
T COG3011 81 R 81 (137)
T ss_pred H
Confidence 3
No 316
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=69.17 E-value=6.8 Score=26.15 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=19.4
Q ss_pred HHhCCCCccEEEEC---C--eeecChHHHHH
Q 033336 74 EWTGQRTVPNVFIG---G--KHIGGCDTVVE 99 (121)
Q Consensus 74 ~~~~v~~~P~i~~~---g--~~~~~~~~~~~ 99 (121)
...|+.++|+++++ | +.+.|.+++..
T Consensus 173 ~~~Gv~GVP~fvv~~~~~~~e~fwG~Drl~~ 203 (209)
T cd03021 173 LKYGAFGLPWIVVTNDKGKTEMFFGSDRFEQ 203 (209)
T ss_pred HHcCCCCCCEEEEEcCCCCccceecCCcHHH
Confidence 34699999999884 4 67888777654
No 317
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=68.91 E-value=16 Score=20.70 Aligned_cols=50 Identities=18% Similarity=0.108 Sum_probs=26.5
Q ss_pred CCCEEE-EeeCCCcchH-HHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE
Q 033336 26 SNPVVV-FSKTYCGYCT-TVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV 84 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~-~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i 84 (121)
...+++ |+.++|+... .+..+-..+...+.+..+.. ..+...+++.. |++
T Consensus 17 ~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~--------~~~~~~~~~~~-~~i 68 (97)
T cd02981 17 DDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSD--------KEVAKKLKVKP-GSV 68 (97)
T ss_pred CCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEECh--------HHHHHHcCCCC-Cce
Confidence 445555 9999887432 22333333433466655542 34555566654 553
No 318
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=68.78 E-value=5 Score=26.25 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=15.1
Q ss_pred EEeeCCCcchHHHHHHHHHh
Q 033336 31 VFSKTYCGYCTTVKELLKQL 50 (121)
Q Consensus 31 if~a~~C~~C~~~~~~l~~~ 50 (121)
+|..|.|+.|-...|.+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 58999999999998888664
No 319
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=65.58 E-value=5.1 Score=24.03 Aligned_cols=16 Identities=25% Similarity=0.588 Sum_probs=13.5
Q ss_pred CEEEEeeCCCcchHHH
Q 033336 28 PVVVFSKTYCGYCTTV 43 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~ 43 (121)
+|-+||-+-||.|+++
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 3667999999999875
No 320
>COG3917 NahD 2-hydroxychromene-2-carboxylate isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.74 E-value=26 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=21.3
Q ss_pred HhCCCCccEEEECCeeecChHHHHH
Q 033336 75 WTGQRTVPNVFIGGKHIGGCDTVVE 99 (121)
Q Consensus 75 ~~~v~~~P~i~~~g~~~~~~~~~~~ 99 (121)
.-|+-+.||+|++++...|.+++..
T Consensus 171 srGvfGaPtfivg~q~fwGqDRL~~ 195 (203)
T COG3917 171 SRGVFGAPTFIVGDQLFWGQDRLYQ 195 (203)
T ss_pred hcCccCCCeEEECCeeeechhHHHH
Confidence 3488999999999999999888754
No 321
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=57.35 E-value=32 Score=19.05 Aligned_cols=54 Identities=28% Similarity=0.371 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHHhCCC---ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE-CCeeecChHHHHHHH
Q 033336 37 CGYCTTVKELLKQLGTS---FKVVELDIESDGSKIQAALAEWTGQRTVPNVFI-GGKHIGGCDTVVEKH 101 (121)
Q Consensus 37 C~~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~-~g~~~~~~~~~~~~~ 101 (121)
-+.|-++.-+++..+.+ ++++..+-.. ......+|.+.. +++.+.|+..+..+.
T Consensus 14 d~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-----------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 14 DPECLAVIAYLKFAGAPEQQFKVVPSNNPW-----------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred CHHHHHHHHHHHhCCCCCceEEEEEcCCCC-----------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 36788888888888877 7666655322 113457999988 899999998887764
No 322
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=56.39 E-value=24 Score=21.88 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=33.1
Q ss_pred hCCC-ceEEEecCCCCcHHHHHHHHHHhCCC--CccEE-EECCeeecChHHHHHHHhCCCcHHHHHhc
Q 033336 50 LGTS-FKVVELDIESDGSKIQAALAEWTGQR--TVPNV-FIGGKHIGGCDTVVEKHQGGKLVPLLRDA 113 (121)
Q Consensus 50 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~v~--~~P~i-~~~g~~~~~~~~~~~~~~~~~l~~~l~~~ 113 (121)
+..+ +.++-+|.+.. ..+.+.+|+. .+|++ +++.+. +.+.-..+..+.+.+.+++++.
T Consensus 53 ~kgk~i~Fv~vd~~~~-----~~~~~~fgl~~~~~P~v~i~~~~~-~KY~~~~~~~t~e~i~~Fv~~~ 114 (130)
T cd02983 53 FKKKPWGWLWTEAGAQ-----LDLEEALNIGGFGYPAMVAINFRK-MKFATLKGSFSEDGINEFLREL 114 (130)
T ss_pred hcCCcEEEEEEeCccc-----HHHHHHcCCCccCCCEEEEEeccc-CccccccCccCHHHHHHHHHHH
Confidence 3334 77888888764 3478888984 59986 343221 0111133444556666766654
No 323
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=55.31 E-value=47 Score=23.65 Aligned_cols=53 Identities=19% Similarity=0.525 Sum_probs=39.5
Q ss_pred CcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 37 CGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 37 C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
.|+|-++.-.++..+.+|+++...... +..-..+|-|-.||+++-+++-+...
T Consensus 61 SPfClKvEt~lR~~~IpYE~~~~~~~~-----------rSr~G~lPFIELNGe~iaDS~~I~~~ 113 (281)
T KOG4244|consen 61 SPFCLKVETFLRAYDIPYEIVDCSLKR-----------RSRNGTLPFIELNGEHIADSDLIEDR 113 (281)
T ss_pred ChHHHHHHHHHHHhCCCceecccccee-----------eccCCCcceEEeCCeeccccHHHHHH
Confidence 378999999999999999887765521 11235789999999999877555443
No 324
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=51.39 E-value=66 Score=20.98 Aligned_cols=68 Identities=16% Similarity=0.286 Sum_probs=41.5
Q ss_pred CCCCEEE-EeeCCCcchHHHH---HHHHHhCCC-ceEEEecCC-------CCcHHHHHHHHHHhCCCCccEE---EECCe
Q 033336 25 SSNPVVV-FSKTYCGYCTTVK---ELLKQLGTS-FKVVELDIE-------SDGSKIQAALAEWTGQRTVPNV---FIGGK 89 (121)
Q Consensus 25 ~~~~v~i-f~a~~C~~C~~~~---~~l~~~~~~-~~~~~v~~~-------~~~~~~~~~~~~~~~v~~~P~i---~~~g~ 89 (121)
.++.++| =.|+.|+.-.+.. ..++++..+ +.+...-.. ...+++.+.+...|||. +|.+ -++|.
T Consensus 24 ~GkVlLIVNtASkCGfTpQYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~YgVt-Fp~f~Ki~VnG~ 102 (162)
T COG0386 24 KGKVLLIVNTASKCGFTPQYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAKFCQLNYGVT-FPMFSKIDVNGK 102 (162)
T ss_pred CCcEEEEEEcccccCCcHhHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHHHHHhccCce-eeeeeEEeecCC
Confidence 3555555 8999999887653 345555554 556554432 23345556566678876 7764 45776
Q ss_pred eecC
Q 033336 90 HIGG 93 (121)
Q Consensus 90 ~~~~ 93 (121)
....
T Consensus 103 ~a~P 106 (162)
T COG0386 103 NAHP 106 (162)
T ss_pred CCCc
Confidence 5543
No 325
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=47.74 E-value=28 Score=27.53 Aligned_cols=60 Identities=18% Similarity=0.399 Sum_probs=35.9
Q ss_pred hCCCCEEE-EeeCCCcchHHHHH-HH------HHhCCCceEEEecCCCCcH--HHH-HHHHHHhCCCCccE
Q 033336 24 VSSNPVVV-FSKTYCGYCTTVKE-LL------KQLGTSFKVVELDIESDGS--KIQ-AALAEWTGQRTVPN 83 (121)
Q Consensus 24 ~~~~~v~i-f~a~~C~~C~~~~~-~l------~~~~~~~~~~~v~~~~~~~--~~~-~~~~~~~~v~~~P~ 83 (121)
.++++|++ ...+.|..|..|.. .| +.++.+|.-++||.++..+ ++- .-+...+|.-++|.
T Consensus 110 ~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPm 180 (786)
T KOG2244|consen 110 AENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPM 180 (786)
T ss_pred hcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCce
Confidence 45677888 77889999987742 22 3345557777777654311 111 11234467778886
No 326
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=46.75 E-value=75 Score=24.41 Aligned_cols=27 Identities=22% Similarity=0.349 Sum_probs=19.8
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHhCC
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQLGT 52 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~~~ 52 (121)
.++|.+ ++.+.|+.|..++.+++++..
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 45 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIAS 45 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHH
Confidence 445544 556689999999999987643
No 327
>COG0019 LysA Diaminopimelate decarboxylase [Amino acid transport and metabolism]
Probab=46.16 E-value=89 Score=23.41 Aligned_cols=50 Identities=18% Similarity=0.236 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCCceEEE
Q 033336 9 SKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVE 58 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~ 58 (121)
+...+......++..+......+|||--|-.|..+.+.|.+.+..++++.
T Consensus 33 d~~~l~~~~~~~~~a~~~~~~~i~yAvKAn~~~~il~~l~~~g~g~Dv~S 82 (394)
T COG0019 33 DEATLRRNARELKSAFPGSGAKVFYAVKANSNPAILRLLAEEGSGFDVAS 82 (394)
T ss_pred cHHHHHHHHHHHHHHhccCCceEEEEEcCCCCHHHHHHHHHhCCCceecC
Confidence 56778888888888888888999999999999999999999888775543
No 328
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=45.54 E-value=18 Score=22.12 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=14.0
Q ss_pred HhCCCCccEEEECCeee
Q 033336 75 WTGQRTVPNVFIGGKHI 91 (121)
Q Consensus 75 ~~~v~~~P~i~~~g~~~ 91 (121)
.+|+..+|.+++|+..+
T Consensus 79 ~lGi~k~PAVV~D~~~V 95 (113)
T TIGR03757 79 QLGVTKIPAVVVDRRYV 95 (113)
T ss_pred HcCCccCCEEEEcCCeE
Confidence 47999999999987654
No 329
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=45.31 E-value=24 Score=21.64 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=13.8
Q ss_pred HhCCCCccEEEECCeee
Q 033336 75 WTGQRTVPNVFIGGKHI 91 (121)
Q Consensus 75 ~~~v~~~P~i~~~g~~~ 91 (121)
.+|+..+|.++++++.+
T Consensus 78 ~lgi~k~PAVVfD~~~V 94 (114)
T PF07511_consen 78 SLGITKYPAVVFDDRYV 94 (114)
T ss_pred HhCccccCEEEEcCCeE
Confidence 47899999998887654
No 330
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=45.24 E-value=1e+02 Score=23.67 Aligned_cols=64 Identities=22% Similarity=0.455 Sum_probs=42.4
Q ss_pred CCCcchHHHHHHHHHhC---CCceEEEecCCCCcHHHHHH---HHHHhC--CCCccEE---EE----CCeeecChHHHHH
Q 033336 35 TYCGYCTTVKELLKQLG---TSFKVVELDIESDGSKIQAA---LAEWTG--QRTVPNV---FI----GGKHIGGCDTVVE 99 (121)
Q Consensus 35 ~~C~~C~~~~~~l~~~~---~~~~~~~v~~~~~~~~~~~~---~~~~~~--v~~~P~i---~~----~g~~~~~~~~~~~ 99 (121)
..||+-.++.-.-+.+. .+|.+-++...+ ++|.+. +++..| +..-|.| ++ .|..+||+.++..
T Consensus 2 ~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p--~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e 79 (452)
T cd05295 2 ADCPYYAKAELLADYLQKNLPDFRVHKIVKHP--DEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLE 79 (452)
T ss_pred CCCchhHHHHHHHHHHHhhCCCceEEEccCCh--HHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHH
Confidence 46999888765445444 448888888766 455544 444444 5678987 33 3678899988866
Q ss_pred H
Q 033336 100 K 100 (121)
Q Consensus 100 ~ 100 (121)
+
T Consensus 80 ~ 80 (452)
T cd05295 80 Y 80 (452)
T ss_pred H
Confidence 5
No 331
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=43.53 E-value=1.6e+02 Score=23.07 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=36.3
Q ss_pred hCCCCEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEE
Q 033336 24 VSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNV 84 (121)
Q Consensus 24 ~~~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i 84 (121)
+++.++++-|. ||+--..+.-.-++.+.+|.++-||..+..+. ..+.+.+-.+++|+.
T Consensus 357 I~dgdviltyg-~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG--~~~lr~Lv~~Ginct 414 (556)
T KOG1467|consen 357 IQDGDVLLTYG-SSSVVNMILLEAKELGKKFRVVVVDSRPNLEG--RKLLRRLVDRGINCT 414 (556)
T ss_pred hhcCCEEEEec-chHHHHHHHHHHHHhCcceEEEEEeCCCCcch--HHHHHHHHHcCCCeE
Confidence 36777777442 65555555444567788898888888765443 234455555677763
No 332
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=43.48 E-value=60 Score=18.16 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=32.4
Q ss_pred EeeCCCcchHHHHHHH----HHh-CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE
Q 033336 32 FSKTYCGYCTTVKELL----KQL-GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI 86 (121)
Q Consensus 32 f~a~~C~~C~~~~~~l----~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~ 86 (121)
|-+...+.++++-..+ ++. +.+|..--+|.... +++++.+++-.+||++.
T Consensus 7 yv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~-----P~lAe~~~ivAtPtLvk 61 (72)
T cd02978 7 YVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQ-----PQLAEEDKIVATPTLVK 61 (72)
T ss_pred EECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccC-----HhHHhhCCEEEechhhh
Confidence 6666668887775544 333 33455444555443 67899999999999754
No 333
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair]
Probab=43.47 E-value=6.6 Score=27.82 Aligned_cols=7 Identities=43% Similarity=1.231 Sum_probs=5.1
Q ss_pred CCCcchH
Q 033336 35 TYCGYCT 41 (121)
Q Consensus 35 ~~C~~C~ 41 (121)
-|||.||
T Consensus 266 ~~CP~CQ 272 (273)
T COG0266 266 FYCPVCQ 272 (273)
T ss_pred EeCCCCC
Confidence 5777776
No 334
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=42.68 E-value=70 Score=19.14 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=21.9
Q ss_pred CCcchHHH-HHHHHHhCCCceEEEecCC
Q 033336 36 YCGYCTTV-KELLKQLGTSFKVVELDIE 62 (121)
Q Consensus 36 ~C~~C~~~-~~~l~~~~~~~~~~~v~~~ 62 (121)
-|-.|..+ +..|.+.+.+..++.+...
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 58888655 6788899999989988874
No 335
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=42.47 E-value=7.5 Score=24.68 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=11.1
Q ss_pred CCCcchHHHHHHH
Q 033336 35 TYCGYCTTVKELL 47 (121)
Q Consensus 35 ~~C~~C~~~~~~l 47 (121)
-.||+|++..|.|
T Consensus 7 i~CPhCRq~ipAL 19 (161)
T PF09654_consen 7 IQCPHCRQTIPAL 19 (161)
T ss_pred CcCchhhcccchh
Confidence 3699999998877
No 336
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=42.42 E-value=94 Score=23.66 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=30.2
Q ss_pred CCccccCC--ChHHHHHHH-HHHHhhh---------------------CCCCEEE-EeeCCC-cchHHHHHHHHH
Q 033336 1 MGLFQSKI--SKEELEIAL-NKAKEIV---------------------SSNPVVV-FSKTYC-GYCTTVKELLKQ 49 (121)
Q Consensus 1 ~g~~~~~~--~~~~~~~~~-~~~~~~~---------------------~~~~v~i-f~a~~C-~~C~~~~~~l~~ 49 (121)
||.|++.. +++.++... +.+..++ .+.+.++ |.+-.+ |-|+.+.|.|+.
T Consensus 229 MGaysp~P~~t~e~~~~~~~~Iv~ptv~gm~~EG~~f~GvLy~glMlt~~GPkViEfN~RFGDPEtq~vL~~l~s 303 (428)
T COG0151 229 MGAYSPAPFITDEVVERAVEEIVEPTVEGMAKEGYPFRGVLYAGLMLTADGPKVIEFNARFGDPETQVVLPLLES 303 (428)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEeEEEEcCCCcEEEEEecccCChhHHHHHHhccc
Confidence 89998764 666555554 3333332 3345566 666444 788888887765
No 337
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=42.37 E-value=7.8 Score=24.66 Aligned_cols=13 Identities=23% Similarity=0.375 Sum_probs=11.1
Q ss_pred CCCcchHHHHHHH
Q 033336 35 TYCGYCTTVKELL 47 (121)
Q Consensus 35 ~~C~~C~~~~~~l 47 (121)
-.||+|++..|.|
T Consensus 10 i~CPhCRQ~ipAL 22 (163)
T TIGR02652 10 IRCPHCRQNIPAL 22 (163)
T ss_pred CcCchhhcccchh
Confidence 3699999998877
No 338
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.61 E-value=83 Score=23.77 Aligned_cols=35 Identities=26% Similarity=0.378 Sum_probs=25.6
Q ss_pred CEEEEeeCCCcchHH------HHHHHHHhCC-CceEEEecCC
Q 033336 28 PVVVFSKTYCGYCTT------VKELLKQLGT-SFKVVELDIE 62 (121)
Q Consensus 28 ~v~if~a~~C~~C~~------~~~~l~~~~~-~~~~~~v~~~ 62 (121)
...+|.+..||+|+. ++.+|+..+. +++++.+|..
T Consensus 72 n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e 113 (420)
T COG3581 72 NDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSE 113 (420)
T ss_pred ccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeecc
Confidence 455577779999974 4667788884 5888888843
No 339
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=41.41 E-value=72 Score=18.55 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=34.1
Q ss_pred EeeCCCcchHHHHHHHHH----h-CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE
Q 033336 32 FSKTYCGYCTTVKELLKQ----L-GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI 86 (121)
Q Consensus 32 f~a~~C~~C~~~~~~l~~----~-~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~ 86 (121)
|.+..-|.++++-..+++ . ...|..--+|.... +++++.+.+-.+||++.
T Consensus 9 yvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~q-----P~lAE~~~IvATPtLIK 63 (87)
T TIGR02654 9 YVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKN-----PQLAEEDKILATPTLSK 63 (87)
T ss_pred EEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-----HhHHhHCCEEEecHHhh
Confidence 788888888877555543 2 22354444555443 67999999999999754
No 340
>PRK09301 circadian clock protein KaiB; Provisional
Probab=39.85 E-value=85 Score=18.90 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=34.6
Q ss_pred EeeCCCcchHHHHHHHHH----h-CCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEE
Q 033336 32 FSKTYCGYCTTVKELLKQ----L-GTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFI 86 (121)
Q Consensus 32 f~a~~C~~C~~~~~~l~~----~-~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~ 86 (121)
|.+..-|..+++-..+++ . ...|..--+|.... +++++.+.+-.+||++.
T Consensus 12 yVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~q-----PelAE~~~IvATPTLIK 66 (103)
T PRK09301 12 YVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKN-----PQLAEEDKILATPTLAK 66 (103)
T ss_pred EEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccC-----HhHHhHCCeEEecHHhh
Confidence 888888888877655543 2 22355444555543 67999999999999754
No 341
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=39.10 E-value=80 Score=18.42 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=21.5
Q ss_pred HHHHHHHhhhCCCCEEE--EeeCCCcchHHHHHHHHHhCC
Q 033336 15 IALNKAKEIVSSNPVVV--FSKTYCGYCTTVKELLKQLGT 52 (121)
Q Consensus 15 ~~~~~~~~~~~~~~v~i--f~a~~C~~C~~~~~~l~~~~~ 52 (121)
+..+.+.. + .++|.+ |..+. +.|+.++..++++..
T Consensus 9 qL~~~f~~-l-~~pV~l~~f~~~~-~~~~e~~~ll~e~a~ 45 (94)
T cd02974 9 QLKAYLER-L-ENPVELVASLDDS-EKSAELLELLEEIAS 45 (94)
T ss_pred HHHHHHHh-C-CCCEEEEEEeCCC-cchHHHHHHHHHHHH
Confidence 33444443 3 445544 65555 999999998877643
No 342
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=38.79 E-value=58 Score=20.19 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=9.8
Q ss_pred HHHHHHhCCCceEEEecC
Q 033336 44 KELLKQLGTSFKVVELDI 61 (121)
Q Consensus 44 ~~~l~~~~~~~~~~~v~~ 61 (121)
..+|++.+.+|..+.+--
T Consensus 70 ~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 70 ILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred HHHHHHcCCCCceEEeCC
Confidence 345666666664444443
No 343
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=37.64 E-value=1.2e+02 Score=19.85 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=25.5
Q ss_pred HHhhhCCCCEEEEeeCC--CcchH--------HHHHHHHHhCCC-ceEEEec
Q 033336 20 AKEIVSSNPVVVFSKTY--CGYCT--------TVKELLKQLGTS-FKVVELD 60 (121)
Q Consensus 20 ~~~~~~~~~v~if~a~~--C~~C~--------~~~~~l~~~~~~-~~~~~v~ 60 (121)
-.++.++++|++|..|. .|.|. .....|++.+.+ +..+.||
T Consensus 31 s~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 31 TDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred HHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 34556788999988754 35553 445666677766 4555555
No 344
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=37.62 E-value=36 Score=21.89 Aligned_cols=21 Identities=19% Similarity=0.135 Sum_probs=15.8
Q ss_pred EEEeeCCCcchHHHHHHHHHh
Q 033336 30 VVFSKTYCGYCTTVKELLKQL 50 (121)
Q Consensus 30 ~if~a~~C~~C~~~~~~l~~~ 50 (121)
-+|+..-||+|--..+.|+++
T Consensus 2 ~~~~D~~cP~cy~~~~~l~~~ 22 (192)
T cd03022 2 DFYFDFSSPYSYLAHERLPAL 22 (192)
T ss_pred eEEEeCCChHHHHHHHHHHHH
Confidence 358889999998777666553
No 345
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=36.95 E-value=55 Score=23.06 Aligned_cols=103 Identities=18% Similarity=0.213 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHhhhC---CCCEEEEeeCCCcchH-----HHHHHHHHhC-CCceEEEecCCCCcHHHHHHHHHHhCC-
Q 033336 9 SKEELEIALNKAKEIVS---SNPVVVFSKTYCGYCT-----TVKELLKQLG-TSFKVVELDIESDGSKIQAALAEWTGQ- 78 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~~~---~~~v~if~a~~C~~C~-----~~~~~l~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~v- 78 (121)
+.++.....+.+...+. .+..++|-...+++-. .+...|++.+ .++-+..|+-.+.-+.+.+.+.+. |+
T Consensus 120 ~~~D~~~va~aL~~~~~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~~~~~~v~vgtvEG~P~~~~vi~~L~~~-g~k 198 (262)
T PF06180_consen 120 SPEDYEAVAEALAEEFPKKRKDEAVVLMGHGTPHPANAAYSALQAMLKKHGYPNVFVGTVEGYPSLEDVIARLKKK-GIK 198 (262)
T ss_dssp SHHHHHHHHHHHHCCS-TT-TTEEEEEEE---SCHHHHHHHHHHHHHHCCT-TTEEEEETTSSSBHHHHHHHHHHH-T-S
T ss_pred ChHHHHHHHHHHHHhccccCCCCEEEEEeCCCCCCccHHHHHHHHHHHhCCCCeEEEEEeCCCCCHHHHHHHHHhc-CCC
Confidence 46677777777766554 5567777777766543 2234555555 457778888777766666666654 54
Q ss_pred --CCccEEEECCeeecChHHHHHHHhCCCcHHHHHhcCC
Q 033336 79 --RTVPNVFIGGKHIGGCDTVVEKHQGGKLVPLLRDAGA 115 (121)
Q Consensus 79 --~~~P~i~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~ 115 (121)
.-+|-+++-|.|.. .++.+. .++.+...|++.|.
T Consensus 199 ~V~L~PlMlVAGdHa~--nDmaGd-e~dSWks~L~~~G~ 234 (262)
T PF06180_consen 199 KVHLIPLMLVAGDHAK--NDMAGD-EEDSWKSRLEAAGF 234 (262)
T ss_dssp EEEEEEESSS--HHHH--CCCCSS-STTSHHHHHHHTT-
T ss_pred eEEEEecccccchhhh--hhhcCC-CcchHHHHHHHCCC
Confidence 34566666776653 133332 46788888888775
No 346
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=36.06 E-value=5.5 Score=28.04 Aligned_cols=10 Identities=20% Similarity=0.969 Sum_probs=6.2
Q ss_pred CCCcchHHHH
Q 033336 35 TYCGYCTTVK 44 (121)
Q Consensus 35 ~~C~~C~~~~ 44 (121)
-|||.||...
T Consensus 256 y~Cp~CQ~~~ 265 (269)
T PRK14811 256 HFCPQCQPLR 265 (269)
T ss_pred EECCCCcCCC
Confidence 5677777543
No 347
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.04 E-value=72 Score=22.77 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHhhhCCCCEEE-Eee----CCCc
Q 033336 9 SKEELEIALNKAKEIVSSNPVVV-FSK----TYCG 38 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~i-f~a----~~C~ 38 (121)
+.++|.+........++++...+ ||. +|||
T Consensus 223 a~qEm~eV~~~d~e~~een~d~l~Fyygt~DgW~p 257 (301)
T KOG3975|consen 223 AAQEMEEVTTRDIEYCEENLDSLWFYYGTNDGWVP 257 (301)
T ss_pred chHHHHHHHHhHHHHHHhcCcEEEEEccCCCCCcc
Confidence 45667776666666666655555 443 7887
No 348
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=34.85 E-value=41 Score=23.97 Aligned_cols=71 Identities=11% Similarity=0.249 Sum_probs=47.6
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCeeecChHHHHHH
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDTVVEK 100 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~~~~~~~~~~~~ 100 (121)
.++|.=|+.=+.|+++-++.+.+.++.-..|+.... +...+.+-+...-..+|.+..+...|-.+..++.+
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~g-eh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdY 97 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQG-EHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDY 97 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccc-cccCchheecCCCCCCceEecCCeecccHHHHHHH
Confidence 344555788899999999999999988888887543 33334454444456788776665555555555544
No 349
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=33.26 E-value=11 Score=26.44 Aligned_cols=7 Identities=29% Similarity=1.070 Sum_probs=3.7
Q ss_pred CCCcchH
Q 033336 35 TYCGYCT 41 (121)
Q Consensus 35 ~~C~~C~ 41 (121)
-|||.||
T Consensus 266 ~~CP~CQ 272 (274)
T PRK01103 266 FFCPRCQ 272 (274)
T ss_pred EECcCCC
Confidence 4555555
No 350
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=32.80 E-value=1.6e+02 Score=21.45 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCC
Q 033336 10 KEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTS 53 (121)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~ 53 (121)
.-++.+..+...+..++++|++|-+ .--.|.++..++.+.+.+
T Consensus 156 FrefP~~v~~~~~~~~~KkVvmyCT-GGIRCEKas~~m~~~GF~ 198 (308)
T COG1054 156 FREFPAWVEENLDLLKDKKVVMYCT-GGIRCEKASAWMKENGFK 198 (308)
T ss_pred hhhhHHHHHHHHHhccCCcEEEEcC-CceeehhhHHHHHHhcch
Confidence 4455566776777778889998885 557999999999887755
No 351
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=32.57 E-value=13 Score=26.38 Aligned_cols=7 Identities=29% Similarity=1.132 Sum_probs=3.5
Q ss_pred CCCcchH
Q 033336 35 TYCGYCT 41 (121)
Q Consensus 35 ~~C~~C~ 41 (121)
-|||.||
T Consensus 275 ~~CP~CQ 281 (282)
T PRK13945 275 HWCPNCQ 281 (282)
T ss_pred EECCCCc
Confidence 3455554
No 352
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=32.49 E-value=12 Score=25.92 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=27.3
Q ss_pred ccccCCChHHHHHHH-HHHHhhh-CCCCEEE-EeeCCCcchHHHHHHHHHh
Q 033336 3 LFQSKISKEELEIAL-NKAKEIV-SSNPVVV-FSKTYCGYCTTVKELLKQL 50 (121)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~-~~~~v~i-f~a~~C~~C~~~~~~l~~~ 50 (121)
.-+|+.+...++... ..+-+.. .+.++++ |++-.||+-..-.+.++++
T Consensus 77 ~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l 127 (237)
T PF00837_consen 77 GPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRL 127 (237)
T ss_pred CCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHH
Confidence 334444444443322 2333333 3557777 9999999987666666554
No 353
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=32.41 E-value=24 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=13.2
Q ss_pred CCCCEEEEeeCCCcchHH
Q 033336 25 SSNPVVVFSKTYCGYCTT 42 (121)
Q Consensus 25 ~~~~v~if~a~~C~~C~~ 42 (121)
.+..|+.-|.|.|+.|+.
T Consensus 79 pGDhVI~~f~p~CG~C~~ 96 (366)
T COG1062 79 PGDHVILLFTPECGQCKF 96 (366)
T ss_pred CCCEEEEcccCCCCCCch
Confidence 455677788888888864
No 354
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=32.24 E-value=1.7e+02 Score=22.48 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=22.3
Q ss_pred HHHHHHHhhhCCCCEEE-EeeCCCcchHHHHHHHHHhCC
Q 033336 15 IALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGT 52 (121)
Q Consensus 15 ~~~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~ 52 (121)
+..+.+.. + ..+|.+ ++.+.|+.|..++.+++++..
T Consensus 9 ~l~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 45 (515)
T TIGR03140 9 QLKSYLAS-L-ENPVTLVLSAGSHEKSKELLELLDEIAS 45 (515)
T ss_pred HHHHHHHh-c-CCCEEEEEEeCCCchhHHHHHHHHHHHH
Confidence 33444443 3 445544 444479999999998877643
No 355
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=31.55 E-value=14 Score=26.04 Aligned_cols=7 Identities=43% Similarity=1.269 Sum_probs=4.0
Q ss_pred CCCcchH
Q 033336 35 TYCGYCT 41 (121)
Q Consensus 35 ~~C~~C~ 41 (121)
-|||.||
T Consensus 265 ~~CP~CQ 271 (272)
T PRK14810 265 HYCPHCQ 271 (272)
T ss_pred EECcCCc
Confidence 4566665
No 356
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=31.30 E-value=1.5e+02 Score=20.78 Aligned_cols=40 Identities=18% Similarity=0.390 Sum_probs=24.2
Q ss_pred CCCEEE-EeeCCCcchHHHHHHHHHh-------CC-CceEEEecCCCCc
Q 033336 26 SNPVVV-FSKTYCGYCTTVKELLKQL-------GT-SFKVVELDIESDG 65 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~C~~~~~~l~~~-------~~-~~~~~~v~~~~~~ 65 (121)
+..++| +...+|.+|..-...|+.+ +. ++.|+-||.-...
T Consensus 26 G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~ 74 (238)
T PF04592_consen 26 GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEH 74 (238)
T ss_pred CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcc
Confidence 333444 8889999998755555433 22 3566777765443
No 357
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=31.23 E-value=1.5e+02 Score=19.06 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCCCEEEEeeCCCcchHHHHHHHHHhCCC
Q 033336 25 SSNPVVVFSKTYCGYCTTVKELLKQLGTS 53 (121)
Q Consensus 25 ~~~~v~if~a~~C~~C~~~~~~l~~~~~~ 53 (121)
.+.+|++|....|..+..+...+..++..
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 45677778888887788777788887754
No 358
>PF14673 DUF4459: Domain of unknown function (DUF4459)
Probab=29.76 E-value=29 Score=21.17 Aligned_cols=14 Identities=7% Similarity=0.496 Sum_probs=9.6
Q ss_pred CCCCEEEEeeCCCc
Q 033336 25 SSNPVVVFSKTYCG 38 (121)
Q Consensus 25 ~~~~v~if~a~~C~ 38 (121)
...--.+|.||||-
T Consensus 89 pddfstmygapwcd 102 (159)
T PF14673_consen 89 PDDFSTMYGAPWCD 102 (159)
T ss_pred CcccccccCCCccc
Confidence 34445669999994
No 359
>PF06827 zf-FPG_IleRS: Zinc finger found in FPG and IleRS; InterPro: IPR010663 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger domain found at the C-terminal in both DNA glycosylase/AP lyase enzymes and in isoleucyl tRNA synthetase. In these two types of enzymes, the C-terminal domain forms a zinc finger. Some related proteins may not bind zinc. DNA glycosylase/AP lyase enzymes are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. These enzymes have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC) []. Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines []. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above, but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine [, ]. An Fpg-type zinc finger is also found at the C terminus of isoleucyl tRNA synthetase (6.1.1.5 from EC) [, ]. This enzyme catalyses the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pre-transfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'post-transfer' editing and involves deacylation of mischarged Val-tRNA(Ile) []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003824 catalytic activity; PDB: 1K82_C 1Q39_A 2OQ4_B 2OPF_A 1K3X_A 1K3W_A 1Q3B_A 2EA0_A 1Q3C_A 2XZF_A ....
Probab=29.31 E-value=7.9 Score=17.37 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=6.8
Q ss_pred EeeCCCcchHH
Q 033336 32 FSKTYCGYCTT 42 (121)
Q Consensus 32 f~a~~C~~C~~ 42 (121)
-.+.+|+.|+.
T Consensus 19 r~~~~C~rCq~ 29 (30)
T PF06827_consen 19 RSTYLCPRCQK 29 (30)
T ss_dssp EEEEE-TTTCC
T ss_pred CCCeECcCCcC
Confidence 34578888864
No 360
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=28.94 E-value=1.4e+02 Score=18.04 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=29.6
Q ss_pred CEEEEeeCCCcchHHHHHHHHHhCCCceEEEecCCCC
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQLGTSFKVVELDIESD 64 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~~~~~~~~~~v~~~~~ 64 (121)
+|++++.|.||-..-++.+.+.++.++..+.+..+..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~ 37 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTT 37 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTST
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccc
Confidence 3677999999999999988888877777777777665
No 361
>PRK10445 endonuclease VIII; Provisional
Probab=28.72 E-value=17 Score=25.48 Aligned_cols=14 Identities=7% Similarity=0.183 Sum_probs=5.5
Q ss_pred CChHHHHHHHHHHH
Q 033336 8 ISKEELEIALNKAK 21 (121)
Q Consensus 8 ~~~~~~~~~~~~~~ 21 (121)
++..++....+.+.
T Consensus 190 Ls~~~~~~L~~~i~ 203 (263)
T PRK10445 190 LNEAQLDALAHALL 203 (263)
T ss_pred CCHHHHHHHHHHHH
Confidence 34444444333333
No 362
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=28.66 E-value=26 Score=23.51 Aligned_cols=50 Identities=30% Similarity=0.465 Sum_probs=28.7
Q ss_pred CCEEE--EeeCCCcchHHHHHHHHH----hCCCceEEEecCCC--------CcHHHHHHHHHHhCC
Q 033336 27 NPVVV--FSKTYCGYCTTVKELLKQ----LGTSFKVVELDIES--------DGSKIQAALAEWTGQ 78 (121)
Q Consensus 27 ~~v~i--f~a~~C~~C~~~~~~l~~----~~~~~~~~~v~~~~--------~~~~~~~~~~~~~~v 78 (121)
.++++ ||.-||..|.- |.+.+ .+..+..+.+.... +-+-+++.+.+.||.
T Consensus 5 ~~~~~gk~~iyWCe~cNl--Pl~~~~c~~cg~~~~~l~LTpPaD~R~~fp~die~Irevl~ee~G~ 68 (202)
T COG5270 5 MPVVLGKFPIYWCEKCNL--PLLGRRCSVCGSKVEELRLTPPADVRPAFPYDIEVIREVLVEEFGV 68 (202)
T ss_pred cceeecccceeehhhCCC--ccccccccccCCcceEEEeCCCCCccccCchHHHHHHHHHHHhcCc
Confidence 45566 89999999975 33322 33335555554332 223345566777775
No 363
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=28.44 E-value=85 Score=21.03 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCcchHHHHHHHHHhCCCceEEEecCCC
Q 033336 36 YCGYCTTVKELLKQLGTSFKVVELDIES 63 (121)
Q Consensus 36 ~C~~C~~~~~~l~~~~~~~~~~~v~~~~ 63 (121)
-|+.|..+...+.+.+-.|.++-.+-..
T Consensus 156 PCGaC~ewL~KIAe~np~f~v~mFd~t~ 183 (193)
T PF14421_consen 156 PCGACKEWLRKIAEANPDFRVYMFDDTR 183 (193)
T ss_pred cchHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 4999999999998988888777666543
No 364
>PF15616 TerY-C: TerY-C metal binding domain
Probab=28.16 E-value=20 Score=22.55 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=9.8
Q ss_pred EeeCCCcchHHH
Q 033336 32 FSKTYCGYCTTV 43 (121)
Q Consensus 32 f~a~~C~~C~~~ 43 (121)
+.+|.||+|-..
T Consensus 75 ~g~PgCP~CGn~ 86 (131)
T PF15616_consen 75 IGAPGCPHCGNQ 86 (131)
T ss_pred cCCCCCCCCcCh
Confidence 677999999764
No 365
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=27.43 E-value=43 Score=22.78 Aligned_cols=25 Identities=24% Similarity=0.553 Sum_probs=20.0
Q ss_pred EEEEeeCCCcchHHHHHHHHHhCCC
Q 033336 29 VVVFSKTYCGYCTTVKELLKQLGTS 53 (121)
Q Consensus 29 v~if~a~~C~~C~~~~~~l~~~~~~ 53 (121)
+.+.+.|-|+.|--+.|.++.+...
T Consensus 4 lhYifDPmCgWCyGa~Pll~~l~~~ 28 (212)
T COG3531 4 LHYIFDPMCGWCYGAAPLLEALSAQ 28 (212)
T ss_pred eEEecCcchhhhhCccHHHHHHHhc
Confidence 4457789999999999999887543
No 366
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=26.32 E-value=2.5e+02 Score=20.11 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=25.3
Q ss_pred CCCEEE-EeeCCCcc-h----HHHHHHHHHhCCC------ceEEEecCCCCcH
Q 033336 26 SNPVVV-FSKTYCGY-C----TTVKELLKQLGTS------FKVVELDIESDGS 66 (121)
Q Consensus 26 ~~~v~i-f~a~~C~~-C----~~~~~~l~~~~~~------~~~~~v~~~~~~~ 66 (121)
++.+++ |.-+.||. | .+|..+++++... -.++.||...+..
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~ 191 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSV 191 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCH
Confidence 455566 99999987 4 3455566655443 2577777654433
No 367
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=26.25 E-value=2.5e+02 Score=20.23 Aligned_cols=40 Identities=13% Similarity=0.091 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhCCCCEEE-EeeCCCcchHHHHHHHHHhCCCc
Q 033336 11 EELEIALNKAKEIVSSNPVVV-FSKTYCGYCTTVKELLKQLGTSF 54 (121)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~v~i-f~a~~C~~C~~~~~~l~~~~~~~ 54 (121)
+++...++.+. .....| .|++-|..-..+.|.....+.++
T Consensus 63 ~~~~sDLe~l~----~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv 103 (305)
T COG5309 63 DQVASDLELLA----SYTHSIRTYGSDCNTLENVLPAAEASGFKV 103 (305)
T ss_pred HHHHhHHHHhc----cCCceEEEeeccchhhhhhHHHHHhcCceE
Confidence 44444444443 555566 67687887778788888887553
No 368
>PRK02935 hypothetical protein; Provisional
Probab=25.68 E-value=16 Score=22.10 Aligned_cols=15 Identities=20% Similarity=0.607 Sum_probs=12.3
Q ss_pred CCcchHHHHHHHHHh
Q 033336 36 YCGYCTTVKELLKQL 50 (121)
Q Consensus 36 ~C~~C~~~~~~l~~~ 50 (121)
+||.|.+....+.+.
T Consensus 72 ~CP~C~K~TKmLGrv 86 (110)
T PRK02935 72 ICPSCEKPTKMLGRV 86 (110)
T ss_pred ECCCCCchhhhccce
Confidence 899999988777654
No 369
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=24.56 E-value=19 Score=24.33 Aligned_cols=11 Identities=9% Similarity=0.474 Sum_probs=9.2
Q ss_pred CCCcchHHHHH
Q 033336 35 TYCGYCTTVKE 45 (121)
Q Consensus 35 ~~C~~C~~~~~ 45 (121)
-|||.|+.+..
T Consensus 12 GWCPnaka~e~ 22 (205)
T PF07895_consen 12 GWCPNAKALET 22 (205)
T ss_pred CcCcCcCcccc
Confidence 59999998764
No 370
>cd06829 PLPDE_III_CANSDC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.
Probab=23.84 E-value=2.6e+02 Score=20.29 Aligned_cols=48 Identities=10% Similarity=0.027 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCCceE
Q 033336 9 SKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSFKV 56 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~~~~ 56 (121)
+++.+......++.++....+.+|||--|-+...+...+.+.+..++.
T Consensus 7 d~~~i~~~~~~~~~~~~~~~~~i~YAvKaN~~~~il~~l~~~G~g~Dv 54 (346)
T cd06829 7 DEAKLRRNLEILKRVQERSGAKILLALKAFSMWSVFPLIREYLDGTTA 54 (346)
T ss_pred eHHHHHHHHHHHHHHHhccCCEEEEEEhhcCCHHHHHHHHHhCCccEe
Confidence 456666666666665544567789999999999999999998876543
No 371
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=69 Score=22.03 Aligned_cols=22 Identities=14% Similarity=0.558 Sum_probs=16.3
Q ss_pred EEEEeeCCCcchHHH-----HHHHHHh
Q 033336 29 VVVFSKTYCGYCTTV-----KELLKQL 50 (121)
Q Consensus 29 v~if~a~~C~~C~~~-----~~~l~~~ 50 (121)
|.+||-+-||+|+.+ .|++...
T Consensus 43 ItlyyEaLCPdc~~Fi~~qL~p~~~~~ 69 (220)
T KOG3160|consen 43 ITLYYEALCPDCSKFIRNQLYPFFDNL 69 (220)
T ss_pred EEEEEEecCccHHHHHHHHHHHHHhhc
Confidence 444999999999876 4566654
No 372
>PF10114 PocR: Sensory domain found in PocR; InterPro: IPR018771 This entry is thought to act as a sensory domain in histidine kinases catalysing the reaction: ATP + protein L-histidine = ADP + protein N- phospho-L-histidine.
Probab=22.94 E-value=1.9e+02 Score=18.29 Aligned_cols=37 Identities=16% Similarity=0.413 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHhhhC--------CCCEEEEeeCCCcchHHHH
Q 033336 8 ISKEELEIALNKAKEIVS--------SNPVVVFSKTYCGYCTTVK 44 (121)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~--------~~~v~if~a~~C~~C~~~~ 44 (121)
++.+.++...+.+.++.. ++..+-....+|++|+.++
T Consensus 5 id~~~lq~i~~~fs~~tgl~~~i~d~~G~~l~~~~~~~~fC~~~~ 49 (173)
T PF10114_consen 5 IDLEELQEIQDSFSKATGLSIVIVDPDGNPLTQPSNFCPFCKLIR 49 (173)
T ss_pred hCHHHHHHHHHHHHHHHCCcEEEEeCCCCEEeeCCCchhhhhHHh
Confidence 467777777777777652 2222234457899996554
No 373
>PF04900 Fcf1: Fcf1; InterPro: IPR006984 This family is comprises of uncharacterised eukaryotic proteins.
Probab=22.47 E-value=1.1e+02 Score=17.80 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=13.9
Q ss_pred HHHHHhC-CCCccEEEECCee
Q 033336 71 ALAEWTG-QRTVPNVFIGGKH 90 (121)
Q Consensus 71 ~~~~~~~-v~~~P~i~~~g~~ 90 (121)
++.+..- +.++|.+++++..
T Consensus 75 ~Lr~~lr~~~GvPvi~l~~~~ 95 (101)
T PF04900_consen 75 ELRRRLRKIPGVPVIYLRRNV 95 (101)
T ss_pred HHHHHHhcCCCCCEEEEECCE
Confidence 4555555 7899999886543
No 374
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=22.16 E-value=76 Score=19.12 Aligned_cols=15 Identities=20% Similarity=0.485 Sum_probs=10.8
Q ss_pred eCCCcchHHHHHHHH
Q 033336 34 KTYCGYCTTVKELLK 48 (121)
Q Consensus 34 a~~C~~C~~~~~~l~ 48 (121)
.+.||.|++-+..+.
T Consensus 31 ~s~Cp~C~kkraeLa 45 (104)
T PF15379_consen 31 SSQCPSCNKKRAELA 45 (104)
T ss_pred cccChHHHHHHHHHH
Confidence 467999988765443
No 375
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=21.98 E-value=1.3e+02 Score=20.21 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCCccEE-EECCeeec
Q 033336 67 KIQAALAEWTGQRTVPNV-FIGGKHIG 92 (121)
Q Consensus 67 ~~~~~~~~~~~v~~~P~i-~~~g~~~~ 92 (121)
+++.++.+..++..+|-| |+.++..-
T Consensus 100 ~~rh~l~~~~~~g~vP~IkFV~DK~~~ 126 (207)
T KOG4700|consen 100 QIRHRLEESIGIGTVPEIKFVGDKALL 126 (207)
T ss_pred HHHHHHHHHhccccCCceEEecchHHH
Confidence 455666677788889976 77776443
No 376
>COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=21.59 E-value=74 Score=17.22 Aligned_cols=19 Identities=11% Similarity=0.349 Sum_probs=14.3
Q ss_pred CCCcchHHH--HHHHHHhCCC
Q 033336 35 TYCGYCTTV--KELLKQLGTS 53 (121)
Q Consensus 35 ~~C~~C~~~--~~~l~~~~~~ 53 (121)
.-||.|+.. ...|.+.+.+
T Consensus 11 A~CP~C~~~Dtl~mW~En~ve 31 (66)
T COG3529 11 AVCPACQAQDTLAMWRENNVE 31 (66)
T ss_pred CCCcccchhhHHHHHHhcCCc
Confidence 579999887 4567777666
No 377
>PRK08105 flavodoxin; Provisional
Probab=21.46 E-value=1.6e+02 Score=18.61 Aligned_cols=22 Identities=27% Similarity=0.229 Sum_probs=17.7
Q ss_pred CCEEEEeeCCCcchHHHHHHHH
Q 033336 27 NPVVVFSKTYCGYCTTVKELLK 48 (121)
Q Consensus 27 ~~v~if~a~~C~~C~~~~~~l~ 48 (121)
+++.|||++--|.++.+...+.
T Consensus 2 ~~i~I~YgS~tGnte~~A~~l~ 23 (149)
T PRK08105 2 AKVGIFVGTVYGNALLVAEEAE 23 (149)
T ss_pred CeEEEEEEcCchHHHHHHHHHH
Confidence 3688899999999998876553
No 378
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.24 E-value=2e+02 Score=20.23 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCC-ceEEEecCCCCcHHHHHHHHHHhCCCCccEEEECCe
Q 033336 41 TTVKELLKQLGTS-FKVVELDIESDGSKIQAALAEWTGQRTVPNVFIGGK 89 (121)
Q Consensus 41 ~~~~~~l~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~v~~~P~i~~~g~ 89 (121)
+.+.|++.++... |+++-++.-... ...++.+..|+++.|.|--||.
T Consensus 26 ~pA~pv~~el~d~G~~Vi~~SSKT~a--E~~~l~~~l~v~~~p~iaEnG~ 73 (274)
T COG3769 26 QPAAPVLLELKDAGVPVILCSSKTRA--EMLYLQKSLGVQGLPLIAENGA 73 (274)
T ss_pred CccchHHHHHHHcCCeEEEeccchHH--HHHHHHHhcCCCCCceeecCCc
Confidence 5567888776543 666665554322 2345778889998888754543
No 379
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=21.24 E-value=52 Score=20.27 Aligned_cols=14 Identities=14% Similarity=0.370 Sum_probs=10.0
Q ss_pred eeCCCcchHHHHHH
Q 033336 33 SKTYCGYCTTVKEL 46 (121)
Q Consensus 33 ~a~~C~~C~~~~~~ 46 (121)
+++-|+.|..+.+.
T Consensus 109 ~~~pC~nC~~~l~~ 122 (125)
T PF14431_consen 109 YAPPCRNCAALLKH 122 (125)
T ss_pred CCCCCchHHHHHhh
Confidence 34779999886543
No 380
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=20.55 E-value=1.2e+02 Score=21.80 Aligned_cols=20 Identities=20% Similarity=0.544 Sum_probs=12.6
Q ss_pred CCCEEE-Ee---eCCCcchHHHHH
Q 033336 26 SNPVVV-FS---KTYCGYCTTVKE 45 (121)
Q Consensus 26 ~~~v~i-f~---a~~C~~C~~~~~ 45 (121)
...++| |= .-||..|...-.
T Consensus 40 ~gilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 40 QGILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred cceEEEEEecccchhhccHHHhhh
Confidence 334444 74 469999987643
No 381
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=20.48 E-value=2.2e+02 Score=17.33 Aligned_cols=70 Identities=13% Similarity=0.125 Sum_probs=37.4
Q ss_pred CCCCEEEEeeCCCcchHHHHHHHHHhCCC----ceEEEecCCCCcHHHHHHHHHHhCCC----CccEE---EECCeeecC
Q 033336 25 SSNPVVVFSKTYCGYCTTVKELLKQLGTS----FKVVELDIESDGSKIQAALAEWTGQR----TVPNV---FIGGKHIGG 93 (121)
Q Consensus 25 ~~~~v~if~a~~C~~C~~~~~~l~~~~~~----~~~~~v~~~~~~~~~~~~~~~~~~v~----~~P~i---~~~g~~~~~ 93 (121)
..+.|++.|...-..-.....++.+.+.. -++.-||.... ....++..+.+. .-|.. |.+|..=.+
T Consensus 18 Tr~NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~---e~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkd 94 (112)
T cd03067 18 TRNNVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDS---ESRKLCKKLKVDPSSKPKPVELKHYKDGDFHTE 94 (112)
T ss_pred hcCcEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCCh---HHHHHHHHHccCCCCCCCcchhhcccCCCcccc
Confidence 35667775544433333334455544333 35555555431 135688888887 55653 567765544
Q ss_pred hHHH
Q 033336 94 CDTV 97 (121)
Q Consensus 94 ~~~~ 97 (121)
+++.
T Consensus 95 YdR~ 98 (112)
T cd03067 95 YNRQ 98 (112)
T ss_pred ccch
Confidence 4433
No 382
>TIGR01047 nspC carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus.
Probab=20.37 E-value=2.8e+02 Score=20.48 Aligned_cols=46 Identities=13% Similarity=0.016 Sum_probs=35.9
Q ss_pred ChHHHHHHHHHHHhhhCCCCEEEEeeCCCcchHHHHHHHHHhCCCc
Q 033336 9 SKEELEIALNKAKEIVSSNPVVVFSKTYCGYCTTVKELLKQLGTSF 54 (121)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~v~if~a~~C~~C~~~~~~l~~~~~~~ 54 (121)
+.+.+.+....+...+....+.+|||--|-++..+...+.+.+.-+
T Consensus 9 d~~~i~~~~~~l~~~~~~~~~~i~YAvKAN~~~~il~~l~~~g~G~ 54 (380)
T TIGR01047 9 EEEKLRKNLEILEHVQQQSGAKVLLALKGFAFWGVFPILREYLDGC 54 (380)
T ss_pred cHHHHHHHHHHHHHHHhhcCCEEEEEEcccCChHHHHHHHHHCCcc
Confidence 5667777777776666555677899999999999999999887654
No 383
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=20.35 E-value=1.7e+02 Score=18.01 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=16.6
Q ss_pred CEEEEeeCCCcchHHHHHHHHH
Q 033336 28 PVVVFSKTYCGYCTTVKELLKQ 49 (121)
Q Consensus 28 ~v~if~a~~C~~C~~~~~~l~~ 49 (121)
+++|+|.+..|..+++...+.+
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~ 23 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQD 23 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHH
Confidence 4677777899999998766633
No 384
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=20.28 E-value=3.1e+02 Score=18.98 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=35.5
Q ss_pred HHHHHHHhhhCCCCEEE--EeeC-----CCcchHHHHHHHHHh---CC-CceEEEecCCCCcHHHHHHHHHHhCCCCcc
Q 033336 15 IALNKAKEIVSSNPVVV--FSKT-----YCGYCTTVKELLKQL---GT-SFKVVELDIESDGSKIQAALAEWTGQRTVP 82 (121)
Q Consensus 15 ~~~~~~~~~~~~~~v~i--f~a~-----~C~~C~~~~~~l~~~---~~-~~~~~~v~~~~~~~~~~~~~~~~~~v~~~P 82 (121)
.+...++.+ ..+|.| |+.+ .-+.=..++..|+++ +. ++.+.-+|.+..... ..+.+..+|+...+
T Consensus 15 ~T~~~L~~L--~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~-~~~~~~~~Gi~~~~ 90 (271)
T PF09822_consen 15 QTKKVLKSL--DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSE-AEEKAKEYGIQPVQ 90 (271)
T ss_pred HHHHHHHhC--CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHH-HHHHHHhcCCCccc
Confidence 455555554 446655 5554 234445556666654 33 466666666444333 34456778877644
Done!