BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033339
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL
KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH
N

High Scoring Gene Products

Symbol, full name Information P value
CBSX3
AT5G10860 		protein from Arabidopsis thaliana 3.2e-42
AT1G47271 protein from Arabidopsis thaliana 1.4e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033339
        (121 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2183740 - symbol:CBSX3 "AT5G10860" species:370...   447  3.2e-42   1
TAIR|locus:4515102654 - symbol:AT1G47271 "AT1G47271" spec...   205  1.4e-16   1


>TAIR|locus:2183740 [details] [associations]
            symbol:CBSX3 "AT5G10860" species:3702 "Arabidopsis
            thaliana" [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009651
            "response to salt stress" evidence=IEP;RCA] [GO:0050897 "cobalt ion
            binding" evidence=IDA] [GO:0045454 "cell redox homeostasis"
            evidence=IDA] [GO:0006096 "glycolysis" evidence=RCA] [GO:0006833
            "water transport" evidence=RCA] [GO:0006972 "hyperosmotic response"
            evidence=RCA] [GO:0007030 "Golgi organization" evidence=RCA]
            [GO:0009266 "response to temperature stimulus" evidence=RCA]
            [GO:0046686 "response to cadmium ion" evidence=RCA]
            InterPro:IPR000644 Pfam:PF00571 PROSITE:PS51371 SMART:SM00116
            GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009651
            eggNOG:COG0517 GO:GO:0050897 GO:GO:0045454 EMBL:AL365234
            EMBL:AF361845 EMBL:AY066046 IPI:IPI00520382 PIR:T50795
            RefSeq:NP_196647.1 UniGene:At.28210 ProteinModelPortal:Q9LEV3
            SMR:Q9LEV3 STRING:Q9LEV3 PaxDb:Q9LEV3 PRIDE:Q9LEV3 ProMEX:Q9LEV3
            EnsemblPlants:AT5G10860.1 GeneID:830953 KEGG:ath:AT5G10860
            GeneFarm:1947 TAIR:At5g10860 HOGENOM:HOG000187909 InParanoid:Q9LEV3
            OMA:ERMTDRR PhylomeDB:Q9LEV3 ProtClustDB:CLSN2686434
            Genevestigator:Q9LEV3 GermOnline:AT5G10860 Uniprot:Q9LEV3
        Length = 206

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 85/114 (74%), Positives = 100/114 (87%)

Query:     1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
             MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct:     1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query:    60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
             +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITER
Sbjct:    61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITER 114


>TAIR|locus:4515102654 [details] [associations]
            symbol:AT1G47271 "AT1G47271" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000644 InterPro:IPR013785 Pfam:PF00571
            PROSITE:PS51371 SMART:SM00116 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0003824 Gene3D:3.20.20.70
            eggNOG:COG0517 GO:GO:0008152 HOGENOM:HOG000187909 EMBL:AC079677
            IPI:IPI00891494 RefSeq:NP_001117443.1 UniGene:At.69452
            ProteinModelPortal:B3H6Z2 SMR:B3H6Z2 PRIDE:B3H6Z2
            EnsemblPlants:AT1G47271.1 GeneID:6241044 KEGG:ath:AT1G47271
            TAIR:At1g47271 OMA:NILRAME PhylomeDB:B3H6Z2 ProtClustDB:CLSN2925454
            Genevestigator:B3H6Z2 Uniprot:B3H6Z2
        Length = 193

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/99 (42%), Positives = 65/99 (65%)

Query:    19 VLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDD 78
             +L R   V  + +  VS+ F  ++S    E G E+ T++D+L  K    D +W+ C T+D
Sbjct:     8 LLARANEVPKIHQRKVSAGFGCLTSPPPPEKGLENLTVADVLSTKDTDID-TWISCRTND 66

Query:    79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
             TV DAVK+M +HN+G+LVV++PG+Q+ +AGI+TER   K
Sbjct:    67 TVSDAVKNMAKHNIGSLVVLEPGDQQYIAGIVTERDYMK 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 22  0.36    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.74u 0.23s 10.97t   Elapsed:  00:00:01
  Total cpu time:  10.74u 0.23s 10.97t   Elapsed:  00:00:01
  Start:  Fri May 10 23:48:48 2013   End:  Fri May 10 23:48:49 2013

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