BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033339
(121 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|357491621|ref|XP_003616098.1| Cbs domain protein [Medicago truncatula]
gi|355517433|gb|AES99056.1| Cbs domain protein [Medicago truncatula]
Length = 205
Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 108/117 (92%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV SRFES + AR+EEHGFESTTISDIL
Sbjct: 38 MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITER +
Sbjct: 98 KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLR 154
>gi|357491617|ref|XP_003616096.1| Cbs domain protein [Medicago truncatula]
gi|355517431|gb|AES99054.1| Cbs domain protein [Medicago truncatula]
Length = 242
Score = 204 bits (520), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 108/117 (92%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV SRFES + AR+EEHGFESTTISDIL
Sbjct: 38 MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITER +
Sbjct: 98 KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLR 154
>gi|357491619|ref|XP_003616097.1| Cbs domain protein [Medicago truncatula]
gi|355517432|gb|AES99055.1| Cbs domain protein [Medicago truncatula]
Length = 254
Score = 204 bits (520), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 108/117 (92%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV SRFES + AR+EEHGFESTTISDIL
Sbjct: 50 MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 109
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITER +
Sbjct: 110 KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLR 166
>gi|357491615|ref|XP_003616095.1| Cbs domain protein [Medicago truncatula]
gi|217073214|gb|ACJ84966.1| unknown [Medicago truncatula]
gi|355517430|gb|AES99053.1| Cbs domain protein [Medicago truncatula]
gi|388522955|gb|AFK49539.1| unknown [Medicago truncatula]
Length = 205
Score = 204 bits (518), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 92/117 (78%), Positives = 108/117 (92%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV SRFES + AR+EEHGFESTTISDIL
Sbjct: 1 MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITER +
Sbjct: 61 KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLR 117
>gi|224127037|ref|XP_002319991.1| predicted protein [Populus trichocarpa]
gi|222858367|gb|EEE95914.1| predicted protein [Populus trichocarpa]
Length = 205
Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 108/117 (92%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGA+++ L+HGN+VK ++LQ +R+++P+LRP+V SRFESVSSAR+EEHGFEST I+DIL
Sbjct: 1 MQGALRACLTHGNVVKDSLLQHVRVLSPLLRPIVFSRFESVSSARIEEHGFESTRIADIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS+AGIITER +
Sbjct: 61 KEKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSIAGIITERDYLR 117
>gi|351722175|ref|NP_001236211.1| uncharacterized protein LOC100527191 [Glycine max]
gi|255631750|gb|ACU16242.1| unknown [Glycine max]
Length = 205
Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 90/117 (76%), Positives = 105/117 (89%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG QSFLSHGN++++AVLQR+R+VNP+L+P+VSSRFESV+ AR+EEHGFESTTISDIL
Sbjct: 1 MQGGFQSFLSHGNVIRNAVLQRVRMVNPLLQPIVSSRFESVTPARIEEHGFESTTISDIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVK K++AGIITER +
Sbjct: 61 NDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLR 117
>gi|225434277|ref|XP_002262902.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial
isoform 1 [Vitis vinifera]
gi|225434279|ref|XP_002262927.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial
isoform 2 [Vitis vinifera]
gi|225434281|ref|XP_002262956.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial
isoform 3 [Vitis vinifera]
Length = 205
Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 105/117 (89%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGAIQ+ +SHG+IVK+AVL +IRLVNP++ VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 1 MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITER +
Sbjct: 61 KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLR 117
>gi|297745725|emb|CBI15781.3| unnamed protein product [Vitis vinifera]
Length = 262
Score = 195 bits (496), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 91/117 (77%), Positives = 105/117 (89%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGAIQ+ +SHG+IVK+AVL +IRLVNP++ VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 58 MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 117
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITER +
Sbjct: 118 KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLR 174
>gi|388511535|gb|AFK43829.1| unknown [Lotus japonicus]
Length = 205
Score = 193 bits (490), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 106/117 (90%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG +++ S GN++K+AVLQ++R+VNP+L+PV SR+ESVS AR+EEHGFESTTI+DIL
Sbjct: 1 MQGGMRAIFSRGNVIKNAVLQQVRMVNPLLKPVAFSRYESVSPARIEEHGFESTTIADIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
KAKGKGADGSWLWCTT+DTVY+AVKSMTQ+NVGALVVVKP E+KS+AGIITER +
Sbjct: 61 KAKGKGADGSWLWCTTEDTVYEAVKSMTQNNVGALVVVKPAEEKSIAGIITERDYLR 117
>gi|351727132|ref|NP_001237662.1| uncharacterized protein LOC100306364 [Glycine max]
gi|255628307|gb|ACU14498.1| unknown [Glycine max]
Length = 206
Score = 191 bits (486), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 103/117 (88%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG ++SFLSHGN++++AVLQR+R+VNP+L+ + SSRFESV+ AR+EEHGFESTTISDIL
Sbjct: 1 MQGGMRSFLSHGNVIRNAVLQRVRMVNPLLQTIASSRFESVTPARIEEHGFESTTISDIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVK K++ GIITER +
Sbjct: 61 NDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAITGIITERDYLR 117
>gi|449444316|ref|XP_004139921.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
isoform 1 [Cucumis sativus]
gi|449444318|ref|XP_004139922.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
isoform 2 [Cucumis sativus]
Length = 206
Score = 191 bits (485), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 89/118 (75%), Positives = 103/118 (87%), Gaps = 1/118 (0%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 59
MQGA++SFLSHGN+VK+AVLQ+IR+ NP +RP + SRF S SSA +EEHGFESTTI DI
Sbjct: 1 MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESTTIDDI 60
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
LKAKGK ADGSWLWCTT+D+VYDAV+SMTQHNVGALVVVKP EQ S+AGIITER +
Sbjct: 61 LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLR 118
>gi|346465295|gb|AEO32492.1| hypothetical protein [Amblyomma maculatum]
Length = 159
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 102/117 (87%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGAIQ+ SHGN+++ AVL+ +R++NP +RP + SR ESVSSAR+EEHGFESTTISDI+
Sbjct: 1 MQGAIQAIQSHGNVLRHAVLRHVRVLNPTMRPTIFSRSESVSSARLEEHGFESTTISDIM 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGK ADGSWLWCTT+DTVYDAVKSMTQHNVGALVVVKP +KSVAGIITER +
Sbjct: 61 KLKGKSADGSWLWCTTEDTVYDAVKSMTQHNVGALVVVKPDGEKSVAGIITERDYLR 117
>gi|449475831|ref|XP_004154564.1| PREDICTED: LOW QUALITY PROTEIN: CBS domain-containing protein
CBSX3, mitochondrial-like [Cucumis sativus]
Length = 206
Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 88/118 (74%), Positives = 102/118 (86%), Gaps = 1/118 (0%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-SVSSARMEEHGFESTTISDI 59
MQGA++SFLSHGN+VK+AVLQ+IR+ NP +RP + SRF S SSA +EEHGFES TI DI
Sbjct: 1 MQGAVRSFLSHGNVVKTAVLQQIRVANPHMRPAMLSRFSTSASSANIEEHGFESXTIDDI 60
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
LKAKGK ADGSWLWCTT+D+VYDAV+SMTQHNVGALVVVKP EQ S+AGIITER +
Sbjct: 61 LKAKGKSADGSWLWCTTEDSVYDAVQSMTQHNVGALVVVKPAEQNSIAGIITERDYLR 118
>gi|224117650|ref|XP_002331597.1| predicted protein [Populus trichocarpa]
gi|222873993|gb|EEF11124.1| predicted protein [Populus trichocarpa]
Length = 205
Score = 188 bits (477), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 87/117 (74%), Positives = 103/117 (88%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGA+++FL+HGN+VK ++ Q +R+ +P+LRPVV SRFESVSSA +EE GFESTTI+DIL
Sbjct: 1 MQGALRTFLTHGNVVKDSLFQHLRVSSPVLRPVVFSRFESVSSAPIEETGFESTTIADIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGK ADGSWLWCTTDDTVYDAVKSMT HNVGALVVVK GEQ+S+AGIITER +
Sbjct: 61 KEKGKNADGSWLWCTTDDTVYDAVKSMTHHNVGALVVVKHGEQESIAGIITERDYLR 117
>gi|255570875|ref|XP_002526389.1| conserved hypothetical protein [Ricinus communis]
gi|223534251|gb|EEF35965.1| conserved hypothetical protein [Ricinus communis]
Length = 206
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 89/118 (75%), Positives = 101/118 (85%), Gaps = 1/118 (0%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLV-NPMLRPVVSSRFESVSSARMEEHGFESTTISDI 59
M A+ +FLS GN++K+AVLQ R+V NP LRP+V SRFESVSSARMEE FESTTI+D+
Sbjct: 1 MNRAVNAFLSRGNLIKNAVLQHARVVANPGLRPIVFSRFESVSSARMEEQSFESTTIADV 60
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
LK KGK ADGSWLWCTT+DTVYDAVKSMT HNVGALVVVKPGEQKS+AGIITER +
Sbjct: 61 LKGKGKSADGSWLWCTTEDTVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLR 118
>gi|357491601|ref|XP_003616088.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517423|gb|AES99046.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 187 bits (475), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 87/113 (76%), Positives = 102/113 (90%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG ++SFLS N++K+AVLQR+ +VNP+L+PV SRFES + AR+EEHGFESTTISDIL
Sbjct: 1 MQGGLRSFLSDRNVIKNAVLQRVCMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ KGKGADGS LWCTTDDTVYDAVKSMTQ+N GALVVVKPGE+KS+AGIITER
Sbjct: 61 QGKGKGADGSRLWCTTDDTVYDAVKSMTQNNAGALVVVKPGEEKSIAGIITER 113
>gi|18266206|gb|AAL67493.1|AF459408_1 senescence-associated putative protein, partial [Narcissus
pseudonarcissus]
Length = 109
Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/109 (76%), Positives = 99/109 (90%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGAIQ+ LS GN++K AVLQ +R++NP L+P + SR ESVSSA++EEHGFESTT+SD+L
Sbjct: 1 MQGAIQAILSRGNVLKRAVLQHVRIINPALQPSILSRSESVSSAQLEEHGFESTTVSDVL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
K+KGK ADGSWLWCTT+DTVYDAVKSMTQHNVGALVVVKPGE+K +AGI
Sbjct: 61 KSKGKSADGSWLWCTTEDTVYDAVKSMTQHNVGALVVVKPGEEKGIAGI 109
>gi|15238284|ref|NP_196647.1| CBS domain-containing protein [Arabidopsis thaliana]
gi|20455364|sp|Q9LEV3.1|CBSX3_ARATH RecName: Full=CBS domain-containing protein CBSX3, mitochondrial;
Flags: Precursor
gi|13605728|gb|AAK32857.1|AF361845_1 AT5g10860/T30N20_130 [Arabidopsis thaliana]
gi|8979720|emb|CAB96841.1| putative protein [Arabidopsis thaliana]
gi|17978887|gb|AAL47413.1| AT5g10860/T30N20_130 [Arabidopsis thaliana]
gi|332004220|gb|AED91603.1| CBS domain-containing protein [Arabidopsis thaliana]
Length = 206
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 101/118 (85%), Gaps = 1/118 (0%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
MQG I+SF+S GN+VK +VLQ +R++NP ++P V SR ES ARMEE GFESTTISD+
Sbjct: 1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITER +
Sbjct: 61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLR 118
>gi|118162023|gb|ABK64186.1| CBS domain-containing protein [Solenostemon scutellarioides]
Length = 202
Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 98/117 (83%), Gaps = 3/117 (2%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQG IQ+ S G K+AVLQ +R+V P +R ++ R ES S+ARMEEHGFESTTISD+L
Sbjct: 1 MQGGIQAIFSRG---KNAVLQHVRVVPPAMRALMFPRHESTSAARMEEHGFESTTISDVL 57
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
AKGKGADGSWLWCTTDD+VYDAVKSMTQHNVGALVVVKPGEQKS+AGIITER +
Sbjct: 58 TAKGKGADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGEQKSIAGIITERDYLR 114
>gi|47027028|gb|AAT08729.1| CBS1 [Hyacinthus orientalis]
Length = 203
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/106 (75%), Positives = 95/106 (89%)
Query: 12 GNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSW 71
GN+++ AVLQ +R++NP RPV+ SR ESVSSAR+EEHGFESTT+SD+LK+KGK ADGSW
Sbjct: 10 GNVLRRAVLQHVRVINPAFRPVIFSRSESVSSARLEEHGFESTTVSDVLKSKGKSADGSW 69
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
LWCTTDD+VYDAVKSMTQHNVGALVVVKPGE+K +AGIITER +
Sbjct: 70 LWCTTDDSVYDAVKSMTQHNVGALVVVKPGEEKDIAGIITERDYLR 115
>gi|297811195|ref|XP_002873481.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297319318|gb|EFH49740.1| CBS domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 206
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/118 (69%), Positives = 99/118 (83%), Gaps = 1/118 (0%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
MQ ++S +S GN+VK++VLQ +R++NP ++P V SR ES ARMEE GFESTTISD+
Sbjct: 1 MQAVVRSLVSGGNVVKASVLQHLRVINPAIQPSVFCSRSESTQPARMEETGFESTTISDV 60
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+ +AGIITER +
Sbjct: 61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQVLAGIITERDYLR 118
>gi|116782877|gb|ABK22702.1| unknown [Picea sitchensis]
Length = 205
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGA++S HG I K+++LQ +R+ P R + +R ESVS AR+EEHGFESTTI+DIL
Sbjct: 1 MQGALRSIQLHGGIFKNSILQHLRVAEPSFRSKIIARHESVSPARLEEHGFESTTIADIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGAL+VVKP E+KS+AGIITER +
Sbjct: 61 KGKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALLVVKPVEEKSIAGIITERDYLR 117
>gi|257209009|emb|CBB36473.1| Arabidopsis protein targeted to mitochondria proteins At5g10860
[Saccharum hybrid cultivar R570]
Length = 205
Score = 175 bits (443), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 81/117 (69%), Positives = 96/117 (82%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ A+Q+ SHGN++K AVLQ I P + P V SRF SVSSAR+E+ GFE+ T+SD+L
Sbjct: 1 MQRAVQAVRSHGNVLKYAVLQHISAPKPAMLPAVFSRFMSVSSARLEDSGFETATVSDVL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K+KGK ADGSWLWCTT+DTVYDAVKSMTQHNVGALVVVKPGE KS+AGI+TER +
Sbjct: 61 KSKGKSADGSWLWCTTEDTVYDAVKSMTQHNVGALVVVKPGEDKSIAGIVTERDYLR 117
>gi|116781417|gb|ABK22092.1| unknown [Picea sitchensis]
Length = 205
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 95/117 (81%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGA++S HG I K+++LQ +R+ P R + +R ESVS AR+EE GFESTTI+DIL
Sbjct: 1 MQGALRSIQLHGGIFKNSILQHLRVAEPSFRSKIIARHESVSPARLEESGFESTTIADIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGAL+VVKP E+KS+AGIITER +
Sbjct: 61 KGKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALLVVKPVEEKSIAGIITERDYLR 117
>gi|257209020|emb|CBB36496.1| Arabidopsis protein targeted to mitochondria proteins At5g10860
[Saccharum hybrid cultivar R570]
Length = 205
Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 95/117 (81%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ A+Q+ SHG+++K AVLQ I P + P V SRF S SSAR+E+ GFE+ T+SD+L
Sbjct: 1 MQRAVQAVRSHGSVLKYAVLQHISAPKPAMLPAVFSRFMSASSARLEDSGFETATVSDVL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K+KGK ADGSWLWCTT+DTVYDAVKSMTQHNVGALVVVKPGE KS+AGI+TER +
Sbjct: 61 KSKGKSADGSWLWCTTEDTVYDAVKSMTQHNVGALVVVKPGEDKSIAGIVTERDYLR 117
>gi|238007630|gb|ACR34850.1| unknown [Zea mays]
gi|414872654|tpg|DAA51211.1| TPA: hypothetical protein ZEAMMB73_541993 [Zea mays]
Length = 150
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 78/114 (68%), Positives = 95/114 (83%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ A+Q+ SHGN++K AVLQ I P + P SRF SVSSAR+E+ GFE+ T++D+L
Sbjct: 1 MQRAVQAVRSHGNVLKYAVLQHISAPKPAMLPAAFSRFMSVSSARLEDRGFETATVADVL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
K+KGK ADGSWLWCTT+D+VYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TERG
Sbjct: 61 KSKGKSADGSWLWCTTEDSVYDAVKSMTQHNVGALVVVKPGQNKSIAGIVTERG 114
>gi|226490863|ref|NP_001150216.1| CBS domain protein [Zea mays]
gi|194708182|gb|ACF88175.1| unknown [Zea mays]
gi|195613652|gb|ACG28656.1| CBS domain protein [Zea mays]
gi|195637616|gb|ACG38276.1| CBS domain protein [Zea mays]
gi|414872655|tpg|DAA51212.1| TPA: CBS domain protein isoform 1 [Zea mays]
gi|414872656|tpg|DAA51213.1| TPA: CBS domain protein isoform 2 [Zea mays]
gi|414872657|tpg|DAA51214.1| TPA: CBS domain protein isoform 3 [Zea mays]
Length = 205
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 77/117 (65%), Positives = 95/117 (81%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ A+Q+ SHGN++K AVLQ I P + P SRF SVSSAR+E+ GFE+ T++D+L
Sbjct: 1 MQRAVQAVRSHGNVLKYAVLQHISAPKPAMLPAAFSRFMSVSSARLEDRGFETATVADVL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K+KGK ADGSWLWCTT+D+VYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TER +
Sbjct: 61 KSKGKSADGSWLWCTTEDSVYDAVKSMTQHNVGALVVVKPGQNKSIAGIVTERDYLR 117
>gi|224285803|gb|ACN40616.1| unknown [Picea sitchensis]
Length = 205
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 95/117 (81%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQGA++S HG I K+++LQ +R+ P R + +R ESVS AR+EE GFESTTI+DIL
Sbjct: 1 MQGALRSIQLHGGIFKNSILQHLRVAEPSFRSKIIARHESVSPARLEESGFESTTIADIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K KGK ADGSWLWCTTDDTVYDAVKSMTQH+VGAL+VVKP E+KS+AGIITER +
Sbjct: 61 KGKGKSADGSWLWCTTDDTVYDAVKSMTQHDVGALLVVKPVEEKSIAGIITERDYLR 117
>gi|357116495|ref|XP_003560016.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
[Brachypodium distachyon]
Length = 205
Score = 169 bits (429), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/117 (68%), Positives = 97/117 (82%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ AIQ+ SHG+++KSAVLQ + + P + P V SR SVSSA++EE GFES T++DIL
Sbjct: 1 MQRAIQAIGSHGSMLKSAVLQHVSVAKPAMLPAVFSRSMSVSSAQIEESGFESGTVADIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K+KGK ADGSWLWCTT+DTVYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TER +
Sbjct: 61 KSKGKSADGSWLWCTTEDTVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLR 117
>gi|115455195|ref|NP_001051198.1| Os03g0737000 [Oryza sativa Japonica Group]
gi|29788876|gb|AAP03422.1| unknown protein [Oryza sativa Japonica Group]
gi|32352166|dbj|BAC78576.1| hypothetical protein [Oryza sativa Japonica Group]
gi|37999993|gb|AAR07080.1| unknown protein [Oryza sativa Japonica Group]
gi|108710961|gb|ABF98756.1| CBS domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|108710962|gb|ABF98757.1| CBS domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|108710963|gb|ABF98758.1| CBS domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113549669|dbj|BAF13112.1| Os03g0737000 [Oryza sativa Japonica Group]
gi|215692663|dbj|BAG88083.1| unnamed protein product [Oryza sativa Japonica Group]
gi|301087459|gb|ADK60921.1| CBSX4 [Oryza sativa Indica Group]
Length = 205
Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 96/117 (82%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ AIQ+ SHG+++KSAVL+ I P + P V SR SVSSA++EE GFE+ T++DIL
Sbjct: 1 MQRAIQAIGSHGSLLKSAVLRHISAPKPSILPAVYSRSMSVSSAQIEESGFETATVADIL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K+KGK ADGSWLWCTTDD+VYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TER +
Sbjct: 61 KSKGKSADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLR 117
>gi|125545649|gb|EAY91788.1| hypothetical protein OsI_13431 [Oryza sativa Indica Group]
Length = 233
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 96/117 (82%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ AIQ+ SHG+++KSAVL+ I P + P V SR SVSSA++EE GFE+ T++DIL
Sbjct: 29 MQRAIQAIGSHGSLLKSAVLRHISAPKPSILPAVYSRSMSVSSAQIEESGFETATVADIL 88
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K+KGK ADGSWLWCTTDD+VYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TER +
Sbjct: 89 KSKGKSADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLR 145
>gi|222625756|gb|EEE59888.1| hypothetical protein OsJ_12490 [Oryza sativa Japonica Group]
Length = 867
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 96/117 (82%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ AIQ+ SHG+++KSAVL+ I P + P V SR SVSSA++EE GFE+ T++DIL
Sbjct: 663 MQRAIQAIGSHGSLLKSAVLRHISAPKPSILPAVYSRSMSVSSAQIEESGFETATVADIL 722
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K+KGK ADGSWLWCTTDD+VYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TER +
Sbjct: 723 KSKGKSADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLR 779
>gi|108710960|gb|ABF98755.1| CBS domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 230
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/117 (67%), Positives = 96/117 (82%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ AIQ+ SHG+++KSAVL+ I P + P V SR SVSSA++EE GFE+ T++DIL
Sbjct: 26 MQRAIQAIGSHGSLLKSAVLRHISAPKPSILPAVYSRSMSVSSAQIEESGFETATVADIL 85
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K+KGK ADGSWLWCTTDD+VYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TER +
Sbjct: 86 KSKGKSADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLR 142
>gi|357491603|ref|XP_003616089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355517424|gb|AES99047.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 552
Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/90 (82%), Positives = 83/90 (92%)
Query: 25 LVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAV 84
+VNP+L+PV SRFES + AR+EEHGFESTTISDIL+ KGKGADGS LWCTTDDTVYDAV
Sbjct: 1 MVNPLLQPVAFSRFESATPARIEEHGFESTTISDILQGKGKGADGSRLWCTTDDTVYDAV 60
Query: 85 KSMTQHNVGALVVVKPGEQKSVAGIITERG 114
KSMTQ+N GALVVVKPGE+KS+AGIITERG
Sbjct: 61 KSMTQNNAGALVVVKPGEEKSIAGIITERG 90
>gi|414872652|tpg|DAA51209.1| TPA: hypothetical protein ZEAMMB73_541993 [Zea mays]
Length = 196
Score = 154 bits (390), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 95/147 (64%), Gaps = 33/147 (22%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ A+Q+ SHGN++K AVLQ I P + P SRF SVSSAR+E+ GFE+ T++D+L
Sbjct: 1 MQRAVQAVRSHGNVLKYAVLQHISAPKPAMLPAAFSRFMSVSSARLEDRGFETATVADVL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKS---------------------------------M 87
K+KGK ADGSWLWCTT+D+VYDAVKS M
Sbjct: 61 KSKGKSADGSWLWCTTEDSVYDAVKSVCPHFPMIVLTPSESMVMHQMIRLPFGTLNFLQM 120
Query: 88 TQHNVGALVVVKPGEQKSVAGIITERG 114
TQHNVGALVVVKPG+ KS+AGI+TERG
Sbjct: 121 TQHNVGALVVVKPGQNKSIAGIVTERG 147
>gi|53771902|gb|AAU93534.1| unknown protein [Zea mays]
gi|414872653|tpg|DAA51210.1| TPA: putative uncharacterized protein adh1F [Zea mays]
Length = 286
Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 78/147 (53%), Positives = 95/147 (64%), Gaps = 33/147 (22%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
MQ A+Q+ SHGN++K AVLQ I P + P SRF SVSSAR+E+ GFE+ T++D+L
Sbjct: 1 MQRAVQAVRSHGNVLKYAVLQHISAPKPAMLPAAFSRFMSVSSARLEDRGFETATVADVL 60
Query: 61 KAKGKGADGSWLWCTTDDTVYDAVKS---------------------------------M 87
K+KGK ADGSWLWCTT+D+VYDAVKS M
Sbjct: 61 KSKGKSADGSWLWCTTEDSVYDAVKSVCPHFPMIVLTPSESMVMHQMIRLPFGTLNFLQM 120
Query: 88 TQHNVGALVVVKPGEQKSVAGIITERG 114
TQHNVGALVVVKPG+ KS+AGI+TERG
Sbjct: 121 TQHNVGALVVVKPGQNKSIAGIVTERG 147
>gi|167999412|ref|XP_001752411.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696311|gb|EDQ82650.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 83/120 (69%), Gaps = 3/120 (2%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFES---VSSARMEEHGFESTTIS 57
MQG ++ + G + VLQ +R+ +R+ES + +EEHGFESTTIS
Sbjct: 1 MQGLVRLVQAQGKALPGIVLQHVRVGGSGFGSGFQTRWESGQAKAKEGLEEHGFESTTIS 60
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
DILK KG+ ADGSWLWC+ DDTVYDAVKSMT +NVGAL+VVK G +K++AGIITER +
Sbjct: 61 DILKEKGRNADGSWLWCSVDDTVYDAVKSMTANNVGALLVVKSGTEKTLAGIITERDYLR 120
>gi|302785239|ref|XP_002974391.1| hypothetical protein SELMODRAFT_101308 [Selaginella moellendorffii]
gi|300157989|gb|EFJ24613.1| hypothetical protein SELMODRAFT_101308 [Selaginella moellendorffii]
Length = 236
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 84/119 (70%), Gaps = 3/119 (2%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFES--VSSARMEEHGFESTTISD 58
MQ + + G + + +L+ +R+ R + R+ES + +EEHGFESTTI D
Sbjct: 1 MQSVAGALRAQGRVAQQGILKHLRVAATNDRFQLP-RWESSVAKPSSLEEHGFESTTIED 59
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
ILKAKGK ADGSWL+C+TDDTVY+AV+SMT HNVGAL+VVK GE+ ++AGIITER +
Sbjct: 60 ILKAKGKSADGSWLFCSTDDTVYEAVRSMTTHNVGALLVVKKGEKGAIAGIITERDYLR 118
>gi|302807987|ref|XP_002985688.1| hypothetical protein SELMODRAFT_122545 [Selaginella moellendorffii]
gi|300146597|gb|EFJ13266.1| hypothetical protein SELMODRAFT_122545 [Selaginella moellendorffii]
Length = 236
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 83/119 (69%), Gaps = 3/119 (2%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFES--VSSARMEEHGFESTTISD 58
MQ + + G + + +L+ +R+ R + R+ES + +EEHGFESTTI D
Sbjct: 1 MQSVAGALRAQGRVAQQGILKHLRVAATNDRFQLP-RWESSVAKPSSLEEHGFESTTIED 59
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
ILK KGK ADGSWL+C+TDDTVY+AV+SMT HNVGAL+VVK GE+ ++AGIITER +
Sbjct: 60 ILKGKGKSADGSWLFCSTDDTVYEAVRSMTTHNVGALLVVKKGEKGAIAGIITERDYLR 118
>gi|168007993|ref|XP_001756692.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692288|gb|EDQ78646.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/108 (55%), Positives = 76/108 (70%), Gaps = 3/108 (2%)
Query: 13 NIVKSAVLQRIRLVNPMLRPVVSSRFES---VSSARMEEHGFESTTISDILKAKGKGADG 69
+++ VLQ +R+ +R E+ + +EEHGFESTTI+DILK KG+ ADG
Sbjct: 13 SVLSRCVLQHVRVGGGAFSFGSQTRKETGQATTKESLEEHGFESTTIADILKEKGQQADG 72
Query: 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
SWLWC+ DDTVYDAVKSMT HNVGAL+VVK G +K +AGIITER +
Sbjct: 73 SWLWCSVDDTVYDAVKSMTAHNVGALLVVKSGAEKKLAGIITERDYLR 120
>gi|168020527|ref|XP_001762794.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685903|gb|EDQ72295.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 244
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 77/109 (70%), Gaps = 3/109 (2%)
Query: 12 GNIVKSAVLQRIRLVNPMLRPVVSSRFES---VSSARMEEHGFESTTISDILKAKGKGAD 68
G + +VLQ +R+ L + +R ES + + EH FESTTI+D+LK KG+ AD
Sbjct: 51 GRTLSGSVLQHVRVGGSALGFGIQTRRESGQIETRESLVEHRFESTTIADVLKDKGQKAD 110
Query: 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
GSWLWC+ +DTVYDAVKSMT +NV AL+VVK G +K +AGIITERG+ K
Sbjct: 111 GSWLWCSVEDTVYDAVKSMTANNVEALLVVKSGTEKMLAGIITERGLVK 159
>gi|225458255|ref|XP_002281327.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial
[Vitis vinifera]
Length = 207
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 77/119 (64%), Gaps = 2/119 (1%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSAR--MEEHGFESTTISD 58
MQG ++ S +K A+LQ + R V SR E V+++ ME+ G E+TT+++
Sbjct: 1 MQGIGRATRSCQETLKLAILQHCHGRSTAGRKNVFSRHECVTTSNPTMEQKGLENTTVAE 60
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+L KG+ GSWLWC T+DTVYDA K M ++N+G+LVV+KPGE K +AGI TER +
Sbjct: 61 VLMTKGEEKSGSWLWCRTNDTVYDAAKHMAENNIGSLVVLKPGEPKHIAGIFTERDYMR 119
>gi|224085680|ref|XP_002307661.1| predicted protein [Populus trichocarpa]
gi|222857110|gb|EEE94657.1| predicted protein [Populus trichocarpa]
Length = 201
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 78/118 (66%), Gaps = 6/118 (5%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESV-SSARMEEHGFESTTISDI 59
M+G ++ S ++ A+L+ +P R + SRF V SS + E G E+ T++D+
Sbjct: 1 MEGLVRGIRSCQETLRVAILK-----HPRDRREIFSRFGRVTSSLPVREKGLENLTVADV 55
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
L KG+ GSWLWC T D+VYDAV++M ++N+G+LVV+KPGEQ+ +AGIITER +
Sbjct: 56 LMTKGEDKIGSWLWCRTTDSVYDAVENMAKNNIGSLVVLKPGEQELIAGIITERDYMR 113
>gi|149392803|gb|ABR26204.1| cbs domain protein [Oryza sativa Indica Group]
Length = 143
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 44/55 (80%), Positives = 50/55 (90%)
Query: 63 KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+GK ADGSWLWCTTDD+VYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TER +
Sbjct: 1 RGKSADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLR 55
>gi|149392473|gb|ABR26039.1| cbs domain protein [Oryza sativa Indica Group]
Length = 141
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/53 (81%), Positives = 48/53 (90%)
Query: 65 KGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
K ADGSWLWCTTDD+VYDAVKSMTQHNVGALVVVKPG+ KS+AGI+TER +
Sbjct: 1 KSADGSWLWCTTDDSVYDAVKSMTQHNVGALVVVKPGQDKSIAGIVTERDYLR 53
>gi|210162090|gb|ACJ09643.1| putative CBS domain-containing protein [Cupressus sempervirens]
Length = 138
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 57/67 (85%), Gaps = 4/67 (5%)
Query: 46 MEEHGFESTTISDILKAKGKGADGSWLWCTTDD-TVYDAVKSMTQHNVGALVVVKPGEQK 104
M+ HG ESTT+SD+L AK ADGSWLWCTTDD +VYDAVKSMTQH+VGALVVV EQK
Sbjct: 1 MDAHG-ESTTMSDVLTAKN--ADGSWLWCTTDDRSVYDAVKSMTQHDVGALVVVTQLEQK 57
Query: 105 SVAGIIT 111
S+AGIIT
Sbjct: 58 SIAGIIT 64
>gi|255538678|ref|XP_002510404.1| conserved hypothetical protein [Ricinus communis]
gi|223551105|gb|EEF52591.1| conserved hypothetical protein [Ricinus communis]
Length = 205
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 9/128 (7%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESV-SSARMEEHGFESTTISDI 59
MQG I+ S I+K + R + SRF V SS + + G E+ T++D+
Sbjct: 1 MQGLIRGVRSCKEILKIGTQRHSHGKEIFERKNIFSRFGCVTSSPSLPQKGLENLTVADV 60
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF--- 116
L KG GSWLWC ++DTVYDAVK+M ++N+G+L+V+KPGE K +AGIITER
Sbjct: 61 LMTKGDEKTGSWLWCHSNDTVYDAVKNMAENNIGSLLVLKPGE-KHLAGIITERDYLRKV 119
Query: 117 ----KACH 120
++CH
Sbjct: 120 IAEGRSCH 127
>gi|224062121|ref|XP_002300765.1| predicted protein [Populus trichocarpa]
gi|222842491|gb|EEE80038.1| predicted protein [Populus trichocarpa]
Length = 209
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 75/123 (60%), Gaps = 13/123 (10%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE------SVSSARMEEHGFEST 54
MQG +Q S ++ A+L+ +P +R ++ R SS + E G E+
Sbjct: 1 MQGLVQGVRSCQETLRVAILR-----HPHVRDIIERRKILSHSGCVTSSPPVGEKGLENL 55
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T++D+L KG+ GSWLWC T DTVYDAVK+M Q+N+G+LVV+ GE++ +AGIITER
Sbjct: 56 TVADVLVTKGEEKLGSWLWCRTTDTVYDAVKNMAQNNIGSLVVL--GERELIAGIITERD 113
Query: 115 IFK 117
+
Sbjct: 114 YLR 116
>gi|297846924|ref|XP_002891343.1| hypothetical protein ARALYDRAFT_314186 [Arabidopsis lyrata subsp.
lyrata]
gi|297337185|gb|EFH67602.1| hypothetical protein ARALYDRAFT_314186 [Arabidopsis lyrata subsp.
lyrata]
Length = 192
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 28 PMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSM 87
P ++ VS+ F V+S E G E+ T++D+L K D +W+ C T+DTV DAVK+M
Sbjct: 16 PKIQTKVSASFGCVTSPPPPEKGLENLTVADVLSTKDADVD-TWISCRTNDTVSDAVKNM 74
Query: 88 TQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+HN+G+LVV+KPG+Q+ +AGI+TER K
Sbjct: 75 AKHNIGSLVVLKPGDQQYIAGIVTERDYMK 104
>gi|356509678|ref|XP_003523573.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
[Glycine max]
Length = 205
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 60/85 (70%), Gaps = 2/85 (2%)
Query: 34 VSSRFE-SVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNV 92
+ S+F + SS RM++ G E+ T+S++L KG+ GSWLWC DD V +A+K+M +N+
Sbjct: 34 IYSKFGCATSSPRMQQKGLENVTVSEVLMTKGEANVGSWLWCRVDDAVINAMKNMADNNI 93
Query: 93 GALVVVKPGEQKSVAGIITERGIFK 117
G+LVV+KP E + +AGIITER K
Sbjct: 94 GSLVVLKP-EGQHIAGIITERDCLK 117
>gi|414881295|tpg|DAA58426.1| TPA: hypothetical protein ZEAMMB73_299878 [Zea mays]
Length = 236
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 72/115 (62%), Gaps = 2/115 (1%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLR-PVVSSRFESVSSARMEEH-GFESTTISD 58
MQG ++ HG ++ AVLQ + + + + SR +S S A + H G E+ T+++
Sbjct: 30 MQGITKALRLHGRQLRHAVLQHMNMNKGIFSWATLISRIQSESPAVIIPHMGLENITVNE 89
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
IL+AKG+ G+ WC+T V++AV+ M HNVGALVV+K G+ +AGI+TER
Sbjct: 90 ILRAKGEAEAGAVYWCSTAHLVHEAVQHMAAHNVGALVVLKSGDMNQLAGIVTER 144
>gi|356518816|ref|XP_003528073.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
[Glycine max]
Length = 205
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 34 VSSRFESV-SSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNV 92
+ S F V SS RM++ G E+ T+S++L KG+ GSWLWC DD V +A+K+M +N+
Sbjct: 34 IYSNFGCVTSSPRMQQKGLENVTVSEVLMTKGEENVGSWLWCRADDAVVNAMKNMADNNI 93
Query: 93 GALVVVKPGEQKSVAGIITERGIFK 117
G+LVV+KP E + +AGI+TER K
Sbjct: 94 GSLVVLKP-EGQHIAGIVTERDCLK 117
>gi|242053745|ref|XP_002456018.1| hypothetical protein SORBIDRAFT_03g028940 [Sorghum bicolor]
gi|241927993|gb|EES01138.1| hypothetical protein SORBIDRAFT_03g028940 [Sorghum bicolor]
Length = 205
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 71/119 (59%), Gaps = 12/119 (10%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS-----SRFESVSSARMEEH-GFEST 54
MQG ++ HG ++ VLQ M + + S SR +S S + H G E+
Sbjct: 1 MQGITKALRLHGRQLRHTVLQH------MNKGIFSWATLISRIQSESPTVIIPHMGLENI 54
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+S+ILKAKG+ G+ WC+T +V++AV+ MT HNVGALVV+K G +AGI+TER
Sbjct: 55 TVSEILKAKGEAEAGAVYWCSTSHSVHEAVQHMTAHNVGALVVLKSGNMNQLAGIVTER 113
>gi|186489216|ref|NP_001117443.1| Cystathionine beta-synthase (CBS) family protein [Arabidopsis
thaliana]
gi|332194027|gb|AEE32148.1| Cystathionine beta-synthase (CBS) family protein [Arabidopsis
thaliana]
Length = 193
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVG 93
VS+ F ++S E G E+ T++D+L K D +W+ C T+DTV DAVK+M +HN+G
Sbjct: 23 VSAGFGCLTSPPPPEKGLENLTVADVLSTKDTDID-TWISCRTNDTVSDAVKNMAKHNIG 81
Query: 94 ALVVVKPGEQKSVAGIITERGIFK 117
+LVV++PG+Q+ +AGI+TER K
Sbjct: 82 SLVVLEPGDQQYIAGIVTERDYMK 105
>gi|357135643|ref|XP_003569418.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
[Brachypodium distachyon]
Length = 205
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 72/119 (60%), Gaps = 12/119 (10%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS-----SRFESVSSARMEEH-GFEST 54
MQG ++ HG ++ VL+ M + + S SR +S S A + H G E+
Sbjct: 1 MQGIAKALSFHGKQLRVTVLRH------MNKGIFSWATLISRIQSESPAVIIPHTGLENI 54
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ +ILKAKG+ G+ WC+T V++AVK MT NVGALVV+K G++K +AGI+TER
Sbjct: 55 TVREILKAKGEAEAGAVYWCSTSHLVHEAVKHMTARNVGALVVLKSGDEKKLAGIVTER 113
>gi|125526972|gb|EAY75086.1| hypothetical protein OsI_02980 [Oryza sativa Indica Group]
Length = 310
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 12/119 (10%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS-----SRFESVSSARMEEH-GFEST 54
MQG ++ HG +K VLQ M + + S SR ++ S + H G E+
Sbjct: 106 MQGITKALRFHGKQLKLTVLQH------MNKGIFSWATLISRIQTESPTVIIPHIGLENI 159
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ +IL AKG+ G+ WC T V++A+K MT HNVGALVV+K G++K +AGI+TER
Sbjct: 160 RVREILNAKGEAKAGAVYWCCTSHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTER 218
>gi|115438763|ref|NP_001043661.1| Os01g0634900 [Oryza sativa Japonica Group]
gi|55296012|dbj|BAD68903.1| CBS domain protein-like [Oryza sativa Japonica Group]
gi|55296028|dbj|BAD69439.1| CBS domain protein-like [Oryza sativa Japonica Group]
gi|113533192|dbj|BAF05575.1| Os01g0634900 [Oryza sativa Japonica Group]
gi|125571300|gb|EAZ12815.1| hypothetical protein OsJ_02734 [Oryza sativa Japonica Group]
Length = 258
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 69/119 (57%), Gaps = 12/119 (10%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVS-----SRFESVSSARMEEH-GFEST 54
MQG ++ HG +K VLQ M + + S SR ++ S + H G E+
Sbjct: 54 MQGITKALRFHGKQLKLTVLQH------MNKGIFSWATLISRIQTESPTVIIPHIGLENI 107
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ +IL AKG+ G+ WC T V++A+K MT HNVGALVV+K G++K +AGI+TER
Sbjct: 108 RVREILNAKGEAKAGAVYWCCTSHFVHEAIKHMTAHNVGALVVLKSGDEKQLAGIVTER 166
>gi|302142508|emb|CBI19711.3| unnamed protein product [Vitis vinifera]
Length = 147
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/52 (61%), Positives = 40/52 (76%)
Query: 66 GADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
G GSWLWC T+DTVYDA K M ++N+G+LVV+KPGE K +AGI TER +
Sbjct: 50 GKIGSWLWCRTNDTVYDAAKHMAENNIGSLVVLKPGEPKHIAGIFTERDYMR 101
>gi|449469967|ref|XP_004152690.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
[Cucumis sativus]
gi|449520034|ref|XP_004167039.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial-like
[Cucumis sativus]
Length = 206
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 53 STTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
+ T+ +I+ KG+G GS W+ C +DT DAV++M +HN+G+LVV+K E +++AGI+T
Sbjct: 54 NITVREIVSKKGEGGIGSSWISCRAEDTAIDAVQNMARHNIGSLVVMKS-EGENIAGIVT 112
Query: 112 ERGIFK 117
ER K
Sbjct: 113 ERDYLK 118
>gi|255086147|ref|XP_002509040.1| predicted protein [Micromonas sp. RCC299]
gi|226524318|gb|ACO70298.1| predicted protein [Micromonas sp. RCC299]
Length = 158
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
G E T+ D+L K G+WLWC + +AV++MT+ NVGAL++V+ + +VAG+
Sbjct: 1 GLEKYTVGDLLLTKSLEDRGTWLWCDENVPALEAVRTMTKANVGALLLVRGRWEDAVAGV 60
Query: 110 ITERGIFK 117
+TER +
Sbjct: 61 LTERDYLR 68
>gi|384250881|gb|EIE24360.1| CBS-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 230
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 43 SARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP-- 100
S+R+ + G+ T I +L++K G+WLWC+ DD V DAVK MT+ NVG+L+V P
Sbjct: 59 SSRVGKQGWGQTKIGQVLQSKHDA--GAWLWCSKDDLVIDAVKKMTKGNVGSLLVFDPEK 116
Query: 101 ---------GEQKSVAGIITER 113
+V GI+TER
Sbjct: 117 ITIDQPIKEASGDAVVGIVTER 138
>gi|307111947|gb|EFN60181.1| hypothetical protein CHLNCDRAFT_33710 [Chlorella variabilis]
Length = 218
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 17/86 (19%)
Query: 47 EEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---- 102
E G+ +T + +LKAK + + G+WLWC DD V DAV+ MT NVG+L+V P +
Sbjct: 45 ETVGWGTTRVEALLKAKAEDS-GAWLWCAADDFVIDAVRKMTHANVGSLLVFDPSKMHLV 103
Query: 103 ------------QKSVAGIITERGIF 116
+ +V G+ITER
Sbjct: 104 RDKDSKHITNASKDAVVGLITERDYL 129
>gi|51471864|gb|AAU04402.1| unknown [Citrus limon]
Length = 117
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 24/28 (85%)
Query: 90 HNVGALVVVKPGEQKSVAGIITERGIFK 117
HNVGALVVVKPGEQKS AGIITER +
Sbjct: 1 HNVGALVVVKPGEQKSAAGIITERDYLR 28
>gi|170700325|ref|ZP_02891337.1| putative signal-transduction protein with CBS domains [Burkholderia
ambifaria IOP40-10]
gi|170134759|gb|EDT03075.1| putative signal-transduction protein with CBS domains [Burkholderia
ambifaria IOP40-10]
Length = 153
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T +D VYDA+K M + +GAL+VV E +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---EGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|394986438|pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
gi|394986439|pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 50 GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
G STT++ ILKAK G ++ T +D VYDA+K M + +GAL+VV + +AG
Sbjct: 3 GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITER 113
I+TER
Sbjct: 58 IVTER 62
>gi|115358872|ref|YP_776010.1| signal-transduction protein [Burkholderia ambifaria AMMD]
gi|115284160|gb|ABI89676.1| putative signal-transduction protein with CBS domains [Burkholderia
ambifaria AMMD]
Length = 153
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDA+K M + +GAL+VV E +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKTDFVYDAIKLMAEKGIGALLVV---EGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|387905594|ref|YP_006335932.1| Inosine-5'-monophosphate dehydrogenase [Burkholderia sp. KJ006]
gi|387580486|gb|AFJ89201.1| Inosine-5'-monophosphate dehydrogenase [Burkholderia sp. KJ006]
Length = 153
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDAVK M + +GAL+V++ E +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKADFVYDAVKLMAEKGIGALLVMEGDE---IAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|134293948|ref|YP_001117684.1| signal-transduction protein [Burkholderia vietnamiensis G4]
gi|134137105|gb|ABO58219.1| putative signal-transduction protein with CBS domains [Burkholderia
vietnamiensis G4]
Length = 153
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDAVK M + +GAL+V++ E +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKADFVYDAVKLMAEKGIGALLVMEGDE---IAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|172063607|ref|YP_001811258.1| signal-transduction protein [Burkholderia ambifaria MC40-6]
gi|171996124|gb|ACB67042.1| putative signal-transduction protein with CBS domains [Burkholderia
ambifaria MC40-6]
Length = 153
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T +D VYDA+K M + +GAL+VV + +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|416908508|ref|ZP_11931183.1| signal-transduction protein [Burkholderia sp. TJI49]
gi|325528776|gb|EGD05835.1| signal-transduction protein [Burkholderia sp. TJI49]
Length = 153
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDA+K M + +GAL+VV + +AGI+T
Sbjct: 2 STTVAQILKAKPDA--GRTIYTVTKADLVYDAIKLMAEKGIGALLVV---DGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|107025989|ref|YP_623500.1| signal-transduction protein [Burkholderia cenocepacia AU 1054]
gi|116692826|ref|YP_838359.1| signal-transduction protein [Burkholderia cenocepacia HI2424]
gi|254250303|ref|ZP_04943623.1| hypothetical protein BCPG_05192 [Burkholderia cenocepacia PC184]
gi|105895363|gb|ABF78527.1| putative signal-transduction protein with CBS domains [Burkholderia
cenocepacia AU 1054]
gi|116650826|gb|ABK11466.1| putative signal-transduction protein with CBS domains [Burkholderia
cenocepacia HI2424]
gi|124876804|gb|EAY66794.1| hypothetical protein BCPG_05192 [Burkholderia cenocepacia PC184]
Length = 153
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDA+K M + +GAL+VV + +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKSDLVYDAIKLMAEKGIGALLVV---DGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|170737907|ref|YP_001779167.1| signal-transduction protein [Burkholderia cenocepacia MC0-3]
gi|169820095|gb|ACA94677.1| putative signal-transduction protein with CBS domains [Burkholderia
cenocepacia MC0-3]
Length = 153
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDA+K M + +GAL+VV + +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKTDLVYDAIKLMAEKGIGALLVV---DGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|254437635|ref|ZP_05051129.1| hypothetical protein OA307_2505 [Octadecabacter antarcticus 307]
gi|198253081|gb|EDY77395.1| hypothetical protein OA307_2505 [Octadecabacter antarcticus 307]
Length = 168
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
L C+ D +++DAV SM++ N GA++VV P K V G++TER +
Sbjct: 13 LTCSPDTSIFDAVTSMSEKNFGAVIVVDP--DKKVLGVVTERDV 54
>gi|206563771|ref|YP_002234534.1| hypothetical protein BCAM1926 [Burkholderia cenocepacia J2315]
gi|421867786|ref|ZP_16299439.1| CBS domain protein [Burkholderia cenocepacia H111]
gi|444360972|ref|ZP_21162128.1| CBS domain protein [Burkholderia cenocepacia BC7]
gi|444366723|ref|ZP_21166740.1| CBS domain protein [Burkholderia cenocepacia K56-2Valvano]
gi|198039811|emb|CAR55785.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
gi|358072199|emb|CCE50317.1| CBS domain protein [Burkholderia cenocepacia H111]
gi|443598832|gb|ELT67156.1| CBS domain protein [Burkholderia cenocepacia BC7]
gi|443604077|gb|ELT72039.1| CBS domain protein [Burkholderia cenocepacia K56-2Valvano]
Length = 153
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDA+K M + +GAL+VV + +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKSDFVYDAIKLMAEKGIGALLVV---DGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|294508543|ref|YP_003572602.1| hypothetical protein SRM_02729 [Salinibacter ruber M8]
gi|294344872|emb|CBH25650.1| CBS domain protein [Salinibacter ruber M8]
Length = 160
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 46 MEEHGFESTTISDILKAKGK-GADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK 104
M+E T + D+L+ KG +G L T DTVYD + +M +G++V+ + E
Sbjct: 1 MDERELVETRVRDVLRTKGTLQQNGDVLTATPTDTVYDCIDAMVDRGIGSIVITEDDE-- 58
Query: 105 SVAGIITERGIFK 117
+ GI TER +
Sbjct: 59 -MVGIFTERDYMR 70
>gi|171321846|ref|ZP_02910746.1| putative signal-transduction protein with CBS domains [Burkholderia
ambifaria MEX-5]
gi|171092865|gb|EDT38118.1| putative signal-transduction protein with CBS domains [Burkholderia
ambifaria MEX-5]
Length = 153
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDA+K M + +GAL+VV + +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKTDFVYDAIKLMAEKGIGALLVV---DGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|452822839|gb|EME29855.1| CBS domain protein [Galdieria sulphuraria]
Length = 341
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 37 RFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVY---------DAVKSM 87
R + S +M FE T+ D+L++KG G D+TVY +A++ M
Sbjct: 170 REDCYVSQKMIAPFFEQQTVKDVLESKGLDRSG-------DNTVYQIHQSVSVDEAIQKM 222
Query: 88 TQHNVGALVVVKPGEQK-SVAGIITERGIFKAC 119
H VG L+V + + S+ G++TER + C
Sbjct: 223 DDHKVGTLLVTQSESNRHSIVGLLTERNFIRKC 255
>gi|377820430|ref|YP_004976801.1| hypothetical protein BYI23_A009860 [Burkholderia sp. YI23]
gi|357935265|gb|AET88824.1| hypothetical protein BYI23_A009860 [Burkholderia sp. YI23]
Length = 150
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D V DAV +M H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTPVSDAVDTMAAHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 FKACHN 121
HN
Sbjct: 56 ILTLHN 61
>gi|452825148|gb|EME32146.1| IMP dehydrogenase [Galdieria sulphuraria]
Length = 263
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVK---PGEQKSVAGIIT 111
T+ DILK KG+ + T D VYDA+K M +NVG+LVV+ G GI+T
Sbjct: 113 TVGDILKVKGE----KFYRIKTTDFVYDAIKKMVDNNVGSLVVIDVDGDGITGKPLGIVT 168
Query: 112 ERGIFK 117
ER +
Sbjct: 169 ERDYLR 174
>gi|78061876|ref|YP_371784.1| signal-transduction protein [Burkholderia sp. 383]
gi|77969761|gb|ABB11140.1| putative signal-transduction protein with CBS domains [Burkholderia
sp. 383]
Length = 153
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ +LKAK G ++ T D VYDA+K M + +GAL+VV + +AGI+T
Sbjct: 2 STTVAQLLKAKPDS--GRTIYTVTKTDLVYDAIKLMAEKGIGALLVV---DGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|66819969|ref|XP_643641.1| hypothetical protein DDB_G0275457 [Dictyostelium discoideum AX4]
gi|60471523|gb|EAL69479.1| hypothetical protein DDB_G0275457 [Dictyostelium discoideum AX4]
Length = 259
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 47 EEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
E F T + DI+K K + ++ +++T+YDA+K M H +G L+VV + S+
Sbjct: 101 EYFAFGDTQVGDIIKEK---QEKQIIYVKSNNTIYDAIKLMNNHGIGCLLVVSEVDG-SL 156
Query: 107 AGIITER 113
GI TER
Sbjct: 157 VGIFTER 163
>gi|91784441|ref|YP_559647.1| hypothetical protein Bxe_A1358 [Burkholderia xenovorans LB400]
gi|385208771|ref|ZP_10035639.1| CBS domain-containing protein [Burkholderia sp. Ch1-1]
gi|91688395|gb|ABE31595.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
gi|385181109|gb|EIF30385.1| CBS domain-containing protein [Burkholderia sp. Ch1-1]
Length = 153
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D T++DAV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTTLHDAVNTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|187924745|ref|YP_001896387.1| hypothetical protein Bphyt_2769 [Burkholderia phytofirmans PsJN]
gi|187715939|gb|ACD17163.1| CBS domain containing protein [Burkholderia phytofirmans PsJN]
Length = 153
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D T++DAV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTTLHDAVNAMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 M 56
>gi|209522266|ref|ZP_03270897.1| CBS domain containing protein [Burkholderia sp. H160]
gi|209497300|gb|EDZ97524.1| CBS domain containing protein [Burkholderia sp. H160]
Length = 155
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D T++DAV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTTLHDAVDTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|303279450|ref|XP_003059018.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460178|gb|EEH57473.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 243
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 19/86 (22%)
Query: 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE------- 102
G E T D+L K G WLW + + +AV+ MT+ NVGAL+V++
Sbjct: 68 GLEKLTAGDLLLQKTLDQRGHWLWVDVNSSALEAVQRMTRANVGALLVMRERVLDVDDDG 127
Query: 103 ------------QKSVAGIITERGIF 116
+VAG++TER
Sbjct: 128 VVTREEASSGKWDDAVAGVVTERDYL 153
>gi|327310840|ref|YP_004337737.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
gi|326947319|gb|AEA12425.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
Length = 137
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
D+T+ DAV + QHN+GALVVV+ E +I+ER + +A +
Sbjct: 24 DETLLDAVDRLAQHNIGALVVVRREEPDVALAVISERDVVRALN 67
>gi|170695907|ref|ZP_02887047.1| CBS domain containing protein [Burkholderia graminis C4D1M]
gi|170139205|gb|EDT07393.1| CBS domain containing protein [Burkholderia graminis C4D1M]
Length = 152
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D T++DAV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDATLHDAVNTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|254560087|ref|YP_003067182.1| hypothetical protein METDI1604 [Methylobacterium extorquens DM4]
gi|254267365|emb|CAX23200.1| conserved hypothetical protein with 2 CBS domains [Methylobacterium
extorquens DM4]
Length = 143
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T++ IL KG S + DD + DA+ +T++ +GALVV+ GE ++V GII+ER
Sbjct: 2 TVAHILAEKG----SSVVTVRPDDPLADAIHLLTENGIGALVVM--GEARTVVGIISERD 55
Query: 115 IFKA 118
I A
Sbjct: 56 IMHA 59
>gi|421471493|ref|ZP_15919777.1| CBS domain protein [Burkholderia multivorans ATCC BAA-247]
gi|400225423|gb|EJO55591.1| CBS domain protein [Burkholderia multivorans ATCC BAA-247]
Length = 153
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ T D VYDA+K M+ +GAL+V+ + +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVTKTDLVYDAIKLMSDKGIGALLVM---DGDDIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|126458985|ref|YP_001055263.1| signal-transduction protein [Pyrobaculum calidifontis JCM 11548]
gi|126248706|gb|ABO07797.1| putative signal-transduction protein with CBS domains [Pyrobaculum
calidifontis JCM 11548]
Length = 139
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
G A + T+D T+Y+A + M QH VG LVVV K G+++ER + +A
Sbjct: 4 GDLASRPPVTITSDATLYEAAEKMAQHKVGLLVVVDKANPKKPIGVVSERDVIRA 58
>gi|413962959|ref|ZP_11402186.1| hypothetical protein BURK_023645 [Burkholderia sp. SJ98]
gi|413928791|gb|EKS68079.1| hypothetical protein BURK_023645 [Burkholderia sp. SJ98]
Length = 150
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + DA+ +M H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTPLSDAIDTMAAHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 FKACHN 121
HN
Sbjct: 56 ILTLHN 61
>gi|430743766|ref|YP_007202895.1| signal transduction protein [Singulisphaera acidiphila DSM 18658]
gi|430015486|gb|AGA27200.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Singulisphaera acidiphila DSM 18658]
Length = 144
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ D+LK+KG G + + TV +A+ M Q+N+G+L VV Q + GII+ER +
Sbjct: 3 VRDVLKSKG----GQIISIEPEATVAEAIARMVQNNIGSLPVVDA--QDHLIGIISERDL 56
Query: 116 FKACHN 121
+ HN
Sbjct: 57 LRGIHN 62
>gi|121604315|ref|YP_981644.1| signal-transduction protein [Polaromonas naphthalenivorans CJ2]
gi|120593284|gb|ABM36723.1| putative signal-transduction protein with CBS domains [Polaromonas
naphthalenivorans CJ2]
Length = 146
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T ++DILK+KG A + DD+V+DA+K M +GAL+V+ E ++ GI+TER
Sbjct: 2 TAVADILKSKGGAAVHTI---RPDDSVFDALKCMADKGIGALLVM---EGDAIVGIVTER 55
>gi|295677060|ref|YP_003605584.1| hypothetical protein BC1002_2012 [Burkholderia sp. CCGE1002]
gi|295436903|gb|ADG16073.1| CBS domain containing protein [Burkholderia sp. CCGE1002]
Length = 155
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D T++DAV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTTLHDAVITMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|294508474|ref|YP_003572532.1| hypothetical protein SRM_02659 [Salinibacter ruber M8]
gi|294344802|emb|CBH25580.1| Conserved hypothetical protein containing CBS domain [Salinibacter
ruber M8]
Length = 237
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 47 EEHGFESTTISDILKAKGKGADGSW-LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS 105
+E ++++ D+L+AKG D + L D+VYD + M + VG++VV G +
Sbjct: 76 DEPAIPNSSVEDVLEAKGALHDPTTVLTAAPQDSVYDCIDRMAEIGVGSIVVTADG---A 132
Query: 106 VAGIITER 113
+AGI TER
Sbjct: 133 IAGIFTER 140
>gi|418531800|ref|ZP_13097711.1| signal-transduction protein with CBS [Comamonas testosteroni ATCC
11996]
gi|371451302|gb|EHN64343.1| signal-transduction protein with CBS [Comamonas testosteroni ATCC
11996]
Length = 151
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT+++IL+AKG + + + DT+ A++ M + ++GAL+V++ GE +AGI+TER
Sbjct: 2 TTVAEILRAKG---NSTIYSVSPSDTMLAALQLMAEKSIGALLVLEGGE---IAGIVTER 55
>gi|221065849|ref|ZP_03541954.1| CBS domain containing protein [Comamonas testosteroni KF-1]
gi|264679584|ref|YP_003279491.1| signal-transduction protein with CBS [Comamonas testosteroni CNB-2]
gi|220710872|gb|EED66240.1| CBS domain containing protein [Comamonas testosteroni KF-1]
gi|262210097|gb|ACY34195.1| putative signal-transduction protein with CBS [Comamonas
testosteroni CNB-2]
Length = 151
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 41/60 (68%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT+++IL+AKG + + + DT+ A++ M + ++GAL+V++ GE +AGI+TER
Sbjct: 2 TTVAEILRAKG---NSTIYSVSPSDTMLAALQLMAEKSIGALLVLEGGE---IAGIVTER 55
>gi|83816083|ref|YP_446538.1| hypothetical protein SRU_2439 [Salinibacter ruber DSM 13855]
gi|83757477|gb|ABC45590.1| CBS domain pair protein [Salinibacter ruber DSM 13855]
Length = 229
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 47 EEHGFESTTISDILKAKGKGADGSW-LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS 105
+E ++++ D+L+AKG D + L D+VYD + M + VG++VV G +
Sbjct: 68 DEPAIPNSSVEDVLEAKGALHDPTTVLTAAPQDSVYDCIDRMAEIGVGSIVVTADG---A 124
Query: 106 VAGIITER 113
+AGI TER
Sbjct: 125 IAGIFTER 132
>gi|256424385|ref|YP_003125038.1| signal transduction protein with CBS domains [Chitinophaga pinensis
DSM 2588]
gi|256039293|gb|ACU62837.1| putative signal transduction protein with CBS domains [Chitinophaga
pinensis DSM 2588]
Length = 146
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ DIL+ KG DDTV+DA+ + NVGALVV+ G+ + V GI +ER
Sbjct: 3 TVRDILRVKGHAV----YSVQPDDTVFDALSVLVDKNVGALVVL--GDNEKVLGIFSER 55
>gi|301107764|ref|XP_002902964.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262098082|gb|EEY56134.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 438
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 10/71 (14%)
Query: 55 TISDILKAKGKGADGS--------WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
TI+D+L A+ + + W +TV+DAV +M + N+G+L+V K Q+ +
Sbjct: 94 TIADVLNAREQELATNKALFDFEEWESIAGTETVHDAVLTMVERNIGSLIVTKA--QEGI 151
Query: 107 AGIITERGIFK 117
GI+TER I K
Sbjct: 152 VGIVTERDILK 162
>gi|91778432|ref|YP_553640.1| signal-transduction protein [Burkholderia xenovorans LB400]
gi|385204644|ref|ZP_10031514.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Burkholderia sp. Ch1-1]
gi|91691092|gb|ABE34290.1| Signal-transduction protein containing CBS domains [Burkholderia
xenovorans LB400]
gi|385184535|gb|EIF33809.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Burkholderia sp. Ch1-1]
Length = 147
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++ +LK K + DD+VYDA+K M + +GALVV + S+AGI+TER
Sbjct: 2 TSVAQLLKTKPNNT--TVFTVGADDSVYDAIKLMAEKGIGALVVT---DGDSIAGIVTER 56
>gi|402568485|ref|YP_006617829.1| signal-transduction protein [Burkholderia cepacia GG4]
gi|402249682|gb|AFQ50135.1| putative signal-transduction protein [Burkholderia cepacia GG4]
Length = 153
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT++ ILKAK G ++ D VYDA+K M + +GAL+V+ GE +AGI+T
Sbjct: 2 STTVAQILKAKPDS--GRTIYTVAKADFVYDAIKLMAEKGIGALLVMD-GE--DIAGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|238024821|ref|YP_002909053.1| signal-transduction protein [Burkholderia glumae BGR1]
gi|237879486|gb|ACR31818.1| signal-transduction protein [Burkholderia glumae BGR1]
Length = 154
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 6/62 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCT-TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
STT+++ILK+K + G ++ D++VYDA+K M +VGALVV E + GI+T
Sbjct: 2 STTVANILKSKPEA--GRTVYTIGKDESVYDALKLMAIKSVGALVVT---EGNDIVGIVT 56
Query: 112 ER 113
ER
Sbjct: 57 ER 58
>gi|85710703|ref|ZP_01041767.1| putative signal-transduction protein with CBS domains
[Erythrobacter sp. NAP1]
gi|85687881|gb|EAQ27886.1| putative signal-transduction protein with CBS domains
[Erythrobacter sp. NAP1]
Length = 172
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
L CT D V+DAV M + N G++ V P + V G++TER IF+
Sbjct: 16 LTCTPDTIVFDAVTQMAEKNFGSIFVTDPDNR--VLGVMTERDIFR 59
>gi|255086303|ref|XP_002509118.1| predicted protein [Micromonas sp. RCC299]
gi|226524396|gb|ACO70376.1| predicted protein [Micromonas sp. RCC299]
Length = 173
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 51 FESTTISDILKAKGKGAD--GSWLWCTTDDTVYDAVKSMTQHNVGALVVVK---PGEQKS 105
F TT++DIL AK + GS WC + V AV+ M +VGAL+V+ + +
Sbjct: 1 FNRTTLADILAAKHRTHTYWGSNHWCDASEPVAVAVRRMNSQDVGALLVMDRSASPQTGA 60
Query: 106 VAGIITERGIFKA 118
+ GI+TER +A
Sbjct: 61 MRGIVTERDYLRA 73
>gi|134295527|ref|YP_001119262.1| XRE family transcriptional regulator [Burkholderia vietnamiensis
G4]
gi|387902047|ref|YP_006332386.1| hypothetical protein MYA_1291 [Burkholderia sp. KJ006]
gi|134138684|gb|ABO54427.1| putative transcriptional regulator, XRE family [Burkholderia
vietnamiensis G4]
gi|387576939|gb|AFJ85655.1| CBS domain protein [Burkholderia sp. KJ006]
Length = 151
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDKPLREAVDTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 FKACH 120
+ H
Sbjct: 56 IQRLH 60
>gi|167589794|ref|ZP_02382182.1| putative signal-transduction protein with CBS domains [Burkholderia
ubonensis Bu]
Length = 153
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
STT++ ILKAK + + TD VYDA+K M + +GAL+V+ + ++GI+TE
Sbjct: 2 STTVAQILKAKPESGRTVYTVRKTD-LVYDAIKLMAEKGIGALLVM---DGDDISGIVTE 57
Query: 113 R 113
R
Sbjct: 58 R 58
>gi|307730415|ref|YP_003907639.1| hypothetical protein [Burkholderia sp. CCGE1003]
gi|307584950|gb|ADN58348.1| CBS domain containing protein [Burkholderia sp. CCGE1003]
Length = 152
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D ++DAV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTPLHDAVNTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|209516332|ref|ZP_03265189.1| CBS domain containing protein [Burkholderia sp. H160]
gi|209503268|gb|EEA03267.1| CBS domain containing protein [Burkholderia sp. H160]
Length = 147
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++ +LK K +D + DD+VY+A++ M + +GALVV + S+AGI+TER
Sbjct: 2 TSVAQLLKTKPNSSDVYTIGA--DDSVYEAIRLMAEKGIGALVVT---DGDSIAGIVTER 56
>gi|161520491|ref|YP_001583918.1| signal-transduction protein [Burkholderia multivorans ATCC 17616]
gi|189353318|ref|YP_001948945.1| signal-transduction protein [Burkholderia multivorans ATCC 17616]
gi|421474512|ref|ZP_15922544.1| CBS domain protein [Burkholderia multivorans CF2]
gi|160344541|gb|ABX17626.1| putative signal-transduction protein with CBS domains [Burkholderia
multivorans ATCC 17616]
gi|189337340|dbj|BAG46409.1| putative signal-transduction protein [Burkholderia multivorans ATCC
17616]
gi|400232026|gb|EJO61674.1| CBS domain protein [Burkholderia multivorans CF2]
Length = 153
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
STT++ ILKAK + TD VYDA+K M+ +GAL+V+ + +AGI+TE
Sbjct: 2 STTVAQILKAKPDSGRTIYTVKKTD-LVYDAIKLMSDKGIGALLVM---DGDDIAGIVTE 57
Query: 113 R 113
R
Sbjct: 58 R 58
>gi|383825420|ref|ZP_09980570.1| transcriptional regulator [Mycobacterium xenopi RIVM700367]
gi|383335150|gb|EID13582.1| transcriptional regulator [Mycobacterium xenopi RIVM700367]
Length = 142
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I D+L+ KG + + D TV + + + +HN+GA+VVV P + GI++ER +
Sbjct: 3 IRDVLRNKG----AAVVTINPDATVTELLAGLAEHNIGAMVVVGP---DGLEGIVSERDV 55
Query: 116 FKACHN 121
+ HN
Sbjct: 56 VRELHN 61
>gi|254254274|ref|ZP_04947591.1| hypothetical protein BDAG_03569 [Burkholderia dolosa AUO158]
gi|124898919|gb|EAY70762.1| hypothetical protein BDAG_03569 [Burkholderia dolosa AUO158]
Length = 153
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
STT++ ILKAK + TD VYDA+K M + +GAL+V+ + +AGI+TE
Sbjct: 2 STTVAQILKAKPDSGRTIYSVRKTD-LVYDAIKLMAEKGIGALLVM---DGDDIAGIVTE 57
Query: 113 R 113
R
Sbjct: 58 R 58
>gi|281202067|gb|EFA76272.1| hypothetical protein PPL_10033 [Polysphondylium pallidum PN500]
Length = 240
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
Query: 39 ESVSSARMEEH--GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALV 96
E A+ H GF T + ++L K +G + + DTV++A+++M +H VGALV
Sbjct: 69 ELTPEAKERRHTAGFVDTKVMELLSNKPRGYQ-NIIKVKEGDTVFNAIQTMQKHKVGALV 127
Query: 97 VVKPGEQKSVAGIITER 113
VV + + GI +ER
Sbjct: 128 VV--DAENRMTGIFSER 142
>gi|312795956|ref|YP_004028878.1| hypothetical protein RBRH_02954 [Burkholderia rhizoxinica HKI 454]
gi|312167731|emb|CBW74734.1| CBS domain containing protein [Burkholderia rhizoxinica HKI 454]
Length = 196
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 9/66 (13%)
Query: 52 ESTTISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
E+ +SDILK KG L+ T DT + +AV++M +H++G+LVV++ G+ + G++
Sbjct: 43 EAMRVSDILKVKGNA-----LYTVTPDTPLSEAVQTMAEHDIGSLVVIEFGD---LVGML 94
Query: 111 TERGIF 116
T R I
Sbjct: 95 TFREII 100
>gi|330802860|ref|XP_003289430.1| hypothetical protein DICPUDRAFT_92298 [Dictyostelium purpureum]
gi|325080472|gb|EGC34026.1| hypothetical protein DICPUDRAFT_92298 [Dictyostelium purpureum]
Length = 196
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 47 EEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
E F T + +I+K+K + + ++ +DT+Y A+K M +H +GAL+V + S+
Sbjct: 93 EYFAFGDTPVGEIIKSK---HEKNIIFIKENDTIYQAIKEMDKHGIGALLVTSEKDG-SL 148
Query: 107 AGIITER 113
GI TER
Sbjct: 149 IGIFTER 155
>gi|418352|sp|P32987.1|YBP3_ACIAM RecName: Full=Uncharacterized 17.7 kDa protein in bps2 3'region;
AltName: Full=ORF3
gi|40783|emb|CAA45529.1| unnamed protein product [Acidianus ambivalens]
Length = 164
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
T+ +A K M +HN+G+LVV+ Q V GIITER I KA N
Sbjct: 21 TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERDIVKAASN 61
>gi|171057111|ref|YP_001789460.1| signal-transduction protein [Leptothrix cholodnii SP-6]
gi|170774556|gb|ACB32695.1| putative signal-transduction protein with CBS domains [Leptothrix
cholodnii SP-6]
Length = 158
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++DILK+K + + T TV+DAVK M + +GAL+V + GEQ + GI+TER
Sbjct: 14 TSVADILKSKPQAVVHT---TTPSTTVFDAVKLMAEKGIGALLVTE-GEQ--LVGIVTER 67
>gi|327311248|ref|YP_004338145.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
gi|326947727|gb|AEA12833.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
Length = 142
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
T D T+ DA K + +HN+G LV+V ++ V G+++ER I +A
Sbjct: 14 ATPDITIKDAAKILREHNIGLLVLVDREDRSKVVGVVSERDIVRAV 59
>gi|299533325|ref|ZP_07046709.1| putative signal-transduction protein with CBS [Comamonas
testosteroni S44]
gi|298718855|gb|EFI59828.1| putative signal-transduction protein with CBS [Comamonas
testosteroni S44]
Length = 151
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 41/60 (68%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT+++IL+AKG + + + DT+ A++ M + ++GAL+V++ G+ +AGI+TER
Sbjct: 2 TTVAEILRAKG---NSTIYSVSPSDTMLAALQLMAEKSIGALLVLEGGD---IAGIVTER 55
>gi|323526749|ref|YP_004228902.1| hypothetical protein BC1001_2426 [Burkholderia sp. CCGE1001]
gi|407714195|ref|YP_006834760.1| hypothetical protein BUPH_03003 [Burkholderia phenoliruptrix
BR3459a]
gi|323383751|gb|ADX55842.1| CBS domain containing protein [Burkholderia sp. CCGE1001]
gi|407236379|gb|AFT86578.1| CBS domain containing protein [Burkholderia phenoliruptrix BR3459a]
Length = 152
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D ++DAV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTALHDAVVTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|451947312|ref|YP_007467907.1| cAMP-binding and CBS domain-containing putative signal-transduction
protein [Desulfocapsa sulfexigens DSM 10523]
gi|451906660|gb|AGF78254.1| cAMP-binding and CBS domain-containing putative signal-transduction
protein [Desulfocapsa sulfexigens DSM 10523]
Length = 642
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Query: 37 RFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALV 96
R VS+ ++ S + D++K K + GS ++ +A SM +H VG+L+
Sbjct: 155 RHHKVSNRSGDDLYLFSVRVGDLVKTLRKVSSGS--------SIQEAAASMAEHRVGSLL 206
Query: 97 VVKPGEQKSVAGIITERGI 115
V P +++++ GIIT+R +
Sbjct: 207 VYDPADEENIVGIITDRDL 225
>gi|333922072|ref|YP_004495653.1| hypothetical protein AS9A_4420 [Amycolicicoccus subflavus DQS3-9A1]
gi|333484293|gb|AEF42853.1| hypothetical protein AS9A_4420 [Amycolicicoccus subflavus DQS3-9A1]
Length = 143
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L+ KG TV + + ++ +HNVGALVVV+ G V GI++ER +
Sbjct: 3 ISDLLRNKGSNVS----TANPKMTVAELIAALAEHNVGALVVVEDGR---VIGIVSERDV 55
Query: 116 FKACH 120
+ H
Sbjct: 56 VRKLH 60
>gi|407710796|ref|YP_006794660.1| hypothetical protein BUPH_06076 [Burkholderia phenoliruptrix
BR3459a]
gi|407239479|gb|AFT89677.1| CBS domain-containing protein [Burkholderia phenoliruptrix BR3459a]
Length = 147
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT++ +LK K + DD+VY+A+K M +GALVV E ++AGI+TER
Sbjct: 2 TTVAQLLKTKPNHT--TVFTIGADDSVYEAIKLMADKGIGALVVT---EGDTIAGIVTER 56
>gi|182439054|ref|YP_001826773.1| hypothetical protein SGR_5261 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178467570|dbj|BAG22090.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 160
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 40 SVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVK 99
+V SAR + TT DI+ + + W +T+ A + M +HNVGAL V
Sbjct: 9 AVPSARRRKSPM--TTAKDIMHSGAR-------WIPAHETLDRAAQLMREHNVGALPVSA 59
Query: 100 PGEQKSVAGIITERGIFKAC 119
G+ + GIIT+R I C
Sbjct: 60 NGDSDRMVGIITDRDIVVGC 79
>gi|160897815|ref|YP_001563397.1| signal-transduction protein [Delftia acidovorans SPH-1]
gi|333915885|ref|YP_004489617.1| putative signal transduction protein with CBS domains [Delftia sp.
Cs1-4]
gi|160363399|gb|ABX35012.1| putative signal-transduction protein with CBS domains [Delftia
acidovorans SPH-1]
gi|333746085|gb|AEF91262.1| putative signal transduction protein with CBS domains [Delftia sp.
Cs1-4]
Length = 146
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T ++DILK+K A G+ D+V DA++ M +GAL+V++ E +AGI+TER
Sbjct: 2 TAVADILKSK---ASGAVYSIAPTDSVLDALRLMADKGIGALLVMEGSE---IAGIVTER 55
>gi|187919677|ref|YP_001888708.1| signal-transduction protein with CBS domains [Burkholderia
phytofirmans PsJN]
gi|187718115|gb|ACD19338.1| putative signal-transduction protein with CBS domains [Burkholderia
phytofirmans PsJN]
Length = 147
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++ +LK K + DD+VY+A+K M + +GALVV + S+AGI+TER
Sbjct: 2 TSVAQLLKTKPNNT--TVFTVGADDSVYEAIKLMAEKGIGALVVT---DGDSIAGIVTER 56
>gi|78066074|ref|YP_368843.1| XRE family transcriptional regulator [Burkholderia sp. 383]
gi|107022531|ref|YP_620858.1| XRE family transcriptional regulator [Burkholderia cenocepacia AU
1054]
gi|116689480|ref|YP_835103.1| XRE family transcriptional regulator [Burkholderia cenocepacia
HI2424]
gi|170732786|ref|YP_001764733.1| hypothetical protein Bcenmc03_1436 [Burkholderia cenocepacia MC0-3]
gi|206559832|ref|YP_002230596.1| hypothetical protein BCAL1465 [Burkholderia cenocepacia J2315]
gi|402566740|ref|YP_006616085.1| XRE family transcriptional regulator [Burkholderia cepacia GG4]
gi|421869111|ref|ZP_16300751.1| Inosine-5'-monophosphate dehydrogenase [Burkholderia cenocepacia
H111]
gi|444362871|ref|ZP_21163363.1| CBS domain protein [Burkholderia cenocepacia BC7]
gi|444373388|ref|ZP_21172755.1| CBS domain protein [Burkholderia cenocepacia K56-2Valvano]
gi|77966819|gb|ABB08199.1| putative transcriptional regulator, XRE family [Burkholderia sp.
383]
gi|105892720|gb|ABF75885.1| putative transcriptional regulator, XRE family [Burkholderia
cenocepacia AU 1054]
gi|116647569|gb|ABK08210.1| putative transcriptional regulator, XRE family [Burkholderia
cenocepacia HI2424]
gi|169816028|gb|ACA90611.1| CBS domain containing protein [Burkholderia cenocepacia MC0-3]
gi|198035873|emb|CAR51764.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
gi|358070860|emb|CCE51629.1| Inosine-5'-monophosphate dehydrogenase [Burkholderia cenocepacia
H111]
gi|402247937|gb|AFQ48391.1| XRE family transcriptional regulator [Burkholderia cepacia GG4]
gi|443591814|gb|ELT60675.1| CBS domain protein [Burkholderia cenocepacia K56-2Valvano]
gi|443596048|gb|ELT64581.1| CBS domain protein [Burkholderia cenocepacia BC7]
Length = 151
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDKPLREAVDTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 FKACH 120
H
Sbjct: 56 ILRLH 60
>gi|291444191|ref|ZP_06583581.1| CBS domain-containing protein [Streptomyces roseosporus NRRL 15998]
gi|291347138|gb|EFE74042.1| CBS domain-containing protein [Streptomyces roseosporus NRRL 15998]
Length = 151
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT DI+ + + W +T+ A + M +HNVGAL V G+ + GIIT+R
Sbjct: 12 TTAKDIMHSGAR-------WIPAHETLDRAAQLMREHNVGALPVSADGDSDRMVGIITDR 64
Query: 114 GIFKAC 119
I C
Sbjct: 65 DIVVGC 70
>gi|115351392|ref|YP_773231.1| XRE family transcriptional regulator [Burkholderia ambifaria AMMD]
gi|170703575|ref|ZP_02894324.1| CBS domain containing protein [Burkholderia ambifaria IOP40-10]
gi|171322386|ref|ZP_02911205.1| CBS domain containing protein [Burkholderia ambifaria MEX-5]
gi|172060431|ref|YP_001808083.1| hypothetical protein BamMC406_1379 [Burkholderia ambifaria MC40-6]
gi|115281380|gb|ABI86897.1| putative transcriptional regulator, XRE family [Burkholderia
ambifaria AMMD]
gi|170131518|gb|EDT00097.1| CBS domain containing protein [Burkholderia ambifaria IOP40-10]
gi|171092288|gb|EDT37662.1| CBS domain containing protein [Burkholderia ambifaria MEX-5]
gi|171992948|gb|ACB63867.1| CBS domain containing protein [Burkholderia ambifaria MC40-6]
Length = 151
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDKPLREAVDTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 FKACH 120
H
Sbjct: 56 ILRLH 60
>gi|330820198|ref|YP_004349060.1| putative signal-transduction protein [Burkholderia gladioli BSR3]
gi|327372193|gb|AEA63548.1| Putative signal-transduction protein [Burkholderia gladioli BSR3]
Length = 153
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 4/61 (6%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
STT+++ILK+K A + +D+VYDA+K M +GAL VVK GE + GI+TE
Sbjct: 2 STTVANILKSK-PDAGQTVHTIGKNDSVYDALKLMAIKGIGAL-VVKEGE--DIVGIVTE 57
Query: 113 R 113
R
Sbjct: 58 R 58
>gi|433603543|ref|YP_007035912.1| hypothetical protein BN6_17170 [Saccharothrix espanaensis DSM
44229]
gi|407881396|emb|CCH29039.1| hypothetical protein BN6_17170 [Saccharothrix espanaensis DSM
44229]
Length = 142
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + D +V + V ++ +HNVGA+VVV +AGI++ER +
Sbjct: 3 IADVLRNKGS----AVATVRADASVAELVAALAEHNVGAMVVVA---DSGIAGIVSERDV 55
Query: 116 FKACHN 121
+ H+
Sbjct: 56 VRRLHD 61
>gi|352682306|ref|YP_004892830.1| hypothetical protein TTX_1109 [Thermoproteus tenax Kra 1]
gi|350275105|emb|CCC81752.1| CBS domain [Thermoproteus tenax Kra 1]
Length = 136
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
D T+ +AV + +HNVGALVVV+ E +++ER I +A +
Sbjct: 17 DSTLLEAVDRLMEHNVGALVVVRREEPDKAVAVLSERDIVRALN 60
>gi|348670893|gb|EGZ10714.1| hypothetical protein PHYSODRAFT_563613 [Phytophthora sojae]
Length = 546
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 10/71 (14%)
Query: 55 TISDILKAKGKGADGS--------WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
TI+D+L A+ + + W +TV+DAV +M + N+G+L+V + E +
Sbjct: 93 TIADVLNAREQELATNKALFDFEEWESIAGTETVHDAVLTMVERNIGSLIVTEAKE--GI 150
Query: 107 AGIITERGIFK 117
GI+TER I K
Sbjct: 151 VGIVTERDILK 161
>gi|300784312|ref|YP_003764603.1| signal transduction protein [Amycolatopsis mediterranei U32]
gi|384147578|ref|YP_005530394.1| signal transduction protein [Amycolatopsis mediterranei S699]
gi|399536197|ref|YP_006548859.1| signal transduction protein [Amycolatopsis mediterranei S699]
gi|299793826|gb|ADJ44201.1| signal transduction protein [Amycolatopsis mediterranei U32]
gi|340525732|gb|AEK40937.1| signal transduction protein [Amycolatopsis mediterranei S699]
gi|398316967|gb|AFO75914.1| signal transduction protein [Amycolatopsis mediterranei S699]
Length = 143
Score = 41.2 bits (95), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + T + TV + + HNVGA+VVV P S+AGI++ER +
Sbjct: 3 IADLLRKKGS----AVATVTPETTVTALLAGLADHNVGAMVVVAP--DGSIAGIVSERDV 56
Query: 116 FK 117
+
Sbjct: 57 VR 58
>gi|239987230|ref|ZP_04707894.1| hypothetical protein SrosN1_07992 [Streptomyces roseosporus NRRL
11379]
gi|411001733|ref|ZP_11378062.1| hypothetical protein SgloC_02953 [Streptomyces globisporus C-1027]
Length = 141
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT DI+ + + W +T+ A + M +HNVGAL V G+ + GIIT+R
Sbjct: 2 TTAKDIMHSGAR-------WIPAHETLDRAAQLMREHNVGALPVSADGDSDRMVGIITDR 54
Query: 114 GIFKAC 119
I C
Sbjct: 55 DIVVGC 60
>gi|354614451|ref|ZP_09032314.1| putative signal transduction protein with CBS domains
[Saccharomonospora paurometabolica YIM 90007]
gi|353221195|gb|EHB85570.1| putative signal transduction protein with CBS domains
[Saccharomonospora paurometabolica YIM 90007]
Length = 149
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDA-VKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
I+D+L+ KG S + T DT D V + +HNVGALVVV P + V GI++ER
Sbjct: 3 IADLLRRKG-----STVATVTPDTGVDGLVARLAEHNVGALVVVGPAGE--VIGIVSERD 55
Query: 115 IFKACHN 121
+ +
Sbjct: 56 VVRGLRE 62
>gi|383822248|ref|ZP_09977476.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium phlei RIVM601174]
gi|383331808|gb|EID10303.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium phlei RIVM601174]
Length = 142
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L++KG + T +V + + HN+GA+VVV P +AGI++ER +
Sbjct: 3 IADVLRSKGS----AVATITPQTSVAGLLTELAVHNIGAMVVVSP---DGLAGIVSERDV 55
Query: 116 FKACH 120
+A H
Sbjct: 56 VRALH 60
>gi|325183871|emb|CCA18329.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325183940|emb|CCA18398.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 494
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 55 TISDILKAKGKGADG--------SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
TI+D+L A+ +G +W + D TV DAV M + VG L+V + + V
Sbjct: 110 TIADVLAAQASNDEGIKAIHNYGTWKSISHDKTVQDAVSMMVTNKVGVLLVTQ--DSLGV 167
Query: 107 AGIITERGIFK 117
GIITER + K
Sbjct: 168 VGIITERDLLK 178
>gi|222875041|gb|EEF12172.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T ++DILK+K A G+ D+V DA++ M +GAL+V+ E +AGI+TER
Sbjct: 81 TAVADILKSK---ASGAVYSIAPTDSVLDALRLMADKGIGALLVM---EGSEIAGIVTER 134
>gi|301631324|ref|XP_002944748.1| PREDICTED: uncharacterized protein At5g10860, mitochondrial-like
[Xenopus (Silurana) tropicalis]
Length = 146
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 39/61 (63%), Gaps = 8/61 (13%)
Query: 54 TTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
+ +SDILK+K + + C DD+V DA+K M + +GAL+V+ E +++ GI+TE
Sbjct: 2 SIVSDILKSKPS----NVIHCLAPDDSVLDALKLMAEKGIGALLVM---EGQAIVGIVTE 54
Query: 113 R 113
R
Sbjct: 55 R 55
>gi|161524964|ref|YP_001579976.1| XRE family transcriptional regulator [Burkholderia multivorans ATCC
17616]
gi|189350289|ref|YP_001945917.1| putative signal-transduction protein [Burkholderia multivorans ATCC
17616]
gi|221197721|ref|ZP_03570767.1| CBS domain protein [Burkholderia multivorans CGD2M]
gi|221204721|ref|ZP_03577738.1| CBS domain protein [Burkholderia multivorans CGD2]
gi|221214916|ref|ZP_03587884.1| CBS domain protein [Burkholderia multivorans CGD1]
gi|421467912|ref|ZP_15916493.1| CBS domain protein [Burkholderia multivorans ATCC BAA-247]
gi|421475871|ref|ZP_15923803.1| CBS domain protein [Burkholderia multivorans CF2]
gi|160342393|gb|ABX15479.1| putative transcriptional regulator, XRE family [Burkholderia
multivorans ATCC 17616]
gi|189334311|dbj|BAG43381.1| putative signal-transduction protein [Burkholderia multivorans ATCC
17616]
gi|221165143|gb|EED97621.1| CBS domain protein [Burkholderia multivorans CGD1]
gi|221175578|gb|EEE08008.1| CBS domain protein [Burkholderia multivorans CGD2]
gi|221181653|gb|EEE14054.1| CBS domain protein [Burkholderia multivorans CGD2M]
gi|400229504|gb|EJO59351.1| CBS domain protein [Burkholderia multivorans CF2]
gi|400232997|gb|EJO62579.1| CBS domain protein [Burkholderia multivorans ATCC BAA-247]
Length = 151
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + GI+T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDKPLREAVDTMAEHDIGSLVVMEYGD---LVGILTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|363421708|ref|ZP_09309792.1| IMP dehydrogenase [Rhodococcus pyridinivorans AK37]
gi|359734055|gb|EHK83038.1| IMP dehydrogenase [Rhodococcus pyridinivorans AK37]
Length = 143
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+DI++ KG D TV + + + N+GA+VV E K+VAGI+TER I
Sbjct: 3 IADIVRNKGSAVH----TVEPDTTVCELIGDFARFNIGAMVVC---EGKTVAGIVTERDI 55
Query: 116 FKACHN 121
+A H
Sbjct: 56 VRALHE 61
>gi|421484626|ref|ZP_15932194.1| hypothetical protein QWC_18467 [Achromobacter piechaudii HLE]
gi|400197121|gb|EJO30089.1| hypothetical protein QWC_18467 [Achromobacter piechaudii HLE]
Length = 146
Score = 40.8 bits (94), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++IL+ K + S + + D +VYDA+K+M + ++GA+VVV E +V G+++ER
Sbjct: 3 TVAEILREK---PNQSVVTVSPDSSVYDAIKTMAERSIGAVVVV---EGDTVLGMLSER 55
>gi|170696511|ref|ZP_02887635.1| putative signal-transduction protein with CBS domains [Burkholderia
graminis C4D1M]
gi|170138558|gb|EDT06762.1| putative signal-transduction protein with CBS domains [Burkholderia
graminis C4D1M]
Length = 146
Score = 40.8 bits (94), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT++ +LK K + + DD+VY+A++ M +GALVV + S+AGIITER
Sbjct: 2 TTVAQLLKTK---PNTTVYTIGADDSVYEAIRLMADKGIGALVVT---DGDSIAGIITER 55
>gi|296109539|ref|YP_003616488.1| signal transduction protein with CBS domains [methanocaldococcus
infernus ME]
gi|295434353|gb|ADG13524.1| putative signal transduction protein with CBS domains
[Methanocaldococcus infernus ME]
Length = 184
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
DTVYDA M + ++GA+VVV E K GI+TER I K
Sbjct: 24 DTVYDAANIMCEKDIGAVVVV---ENKKPVGILTERDILK 60
>gi|295699415|ref|YP_003607308.1| signal transduction protein with CBS domains [Burkholderia sp.
CCGE1002]
gi|295438628|gb|ADG17797.1| putative signal transduction protein with CBS domains [Burkholderia
sp. CCGE1002]
Length = 147
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 5/60 (8%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++ +LK K ++ + DD+VY+A++ M + +GALVV + S+AGI+TER
Sbjct: 2 TSVAQLLKTKPNSSEVYTIGA--DDSVYEAIRLMAEKGIGALVVT---DGDSIAGIVTER 56
>gi|427404057|ref|ZP_18894939.1| hypothetical protein HMPREF9710_04535 [Massilia timonae CCUG 45783]
gi|425717296|gb|EKU80261.1| hypothetical protein HMPREF9710_04535 [Massilia timonae CCUG 45783]
Length = 150
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 43/66 (65%), Gaps = 9/66 (13%)
Query: 56 ISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
+S+IL+ KG + L+ T D + DAV +M+++++G+LVV++ G+ + G++T R
Sbjct: 3 VSEILQVKG-----NILYTVTPDQPLVDAVTTMSENDIGSLVVMEYGD---LVGMLTFRE 54
Query: 115 IFKACH 120
+ KA H
Sbjct: 55 VLKALH 60
>gi|416978034|ref|ZP_11937767.1| putative signal-transduction protein [Burkholderia sp. TJI49]
gi|325520023|gb|EGC99252.1| putative signal-transduction protein [Burkholderia sp. TJI49]
Length = 151
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + G++T R +
Sbjct: 3 VSDILKVKG----NTLFTVTPDKPLREAVDTMAEHDIGSLVVMEYGD---LVGMLTFREV 55
Query: 116 FKACHN 121
H
Sbjct: 56 ILRLHE 61
>gi|119871770|ref|YP_929777.1| signal-transduction protein [Pyrobaculum islandicum DSM 4184]
gi|119673178|gb|ABL87434.1| putative signal-transduction protein with CBS domains [Pyrobaculum
islandicum DSM 4184]
Length = 136
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
+T+ + M ++N+GA+VV+ P + K GIITER I KA
Sbjct: 23 ETLVGVAEKMAENNIGAVVVISPQDPKKPVGIITERDIVKAV 64
>gi|326779705|ref|ZP_08238970.1| putative signal transduction protein with CBS domains [Streptomyces
griseus XylebKG-1]
gi|326660038|gb|EGE44884.1| putative signal transduction protein with CBS domains [Streptomyces
griseus XylebKG-1]
Length = 141
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT DI+ + + W +T+ A + M +HNVGAL V G+ + GIIT+R
Sbjct: 2 TTAKDIMHSGAR-------WIPAHETLDRAAQLMREHNVGALPVSANGDSDRMVGIITDR 54
Query: 114 GIFKAC 119
I C
Sbjct: 55 DIVVGC 60
>gi|301087197|gb|ADK60815.1| unknown, partial [Arachis diogoi]
Length = 27
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIR 24
MQG +S LSHGN+VKSA+LQR+R
Sbjct: 4 MQGGFRSILSHGNVVKSAILQRMR 27
>gi|241767956|ref|ZP_04765497.1| putative signal transduction protein with CBS domains [Acidovorax
delafieldii 2AN]
gi|241360854|gb|EER57698.1| putative signal transduction protein with CBS domains [Acidovorax
delafieldii 2AN]
Length = 146
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T ++DIL++K D + DD+V+DA++ M +GAL+V+ E ++ GI+TER
Sbjct: 2 TAVADILRSK---RDNTVHRIGPDDSVFDALQRMADKGIGALLVM---EGDAIVGIVTER 55
>gi|332797972|ref|YP_004459472.1| paired CBS domain-containing protein [Acidianus hospitalis W1]
gi|332695707|gb|AEE95174.1| paired CBS domain protein [Acidianus hospitalis W1]
Length = 164
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
T+ +A K M +HN+G+LVV+ Q V GIITER + +A N
Sbjct: 21 TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERDVVRAVSN 61
>gi|291279824|ref|YP_003496659.1| signal transduction protein [Deferribacter desulfuricans SSM1]
gi|290754526|dbj|BAI80903.1| signal transduction protein [Deferribacter desulfuricans SSM1]
Length = 147
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 7/60 (11%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT+ DIL KG + D TVYDA+K M +N+G+ V+V G++ + GI TER
Sbjct: 3 TTVKDILAKKG----NQIFTVSADSTVYDALKVMADNNIGS-VLVMDGDK--MVGIFTER 55
>gi|121595155|ref|YP_987051.1| signal-transduction protein [Acidovorax sp. JS42]
gi|120607235|gb|ABM42975.1| putative signal-transduction protein with CBS domains [Acidovorax
sp. JS42]
Length = 145
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT+++IL+ K ADG DTV A++ M +GAL+V++ G+Q +AGI TER
Sbjct: 2 TTVAEILRTK---ADGQVHAVEPSDTVLTALRRMADKGIGALLVME-GDQ--IAGIFTER 55
>gi|238027743|ref|YP_002911974.1| XRE family transcriptional regulator [Burkholderia glumae BGR1]
gi|237876937|gb|ACR29270.1| Putative transcriptional regulator, XRE family [Burkholderia glumae
BGR1]
Length = 156
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + GI+T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTPLREAVDAMAEHDIGSLVVMEYGD---LVGILTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|186476329|ref|YP_001857799.1| CBS domain-containing protein [Burkholderia phymatum STM815]
gi|184192788|gb|ACC70753.1| CBS domain containing protein [Burkholderia phymatum STM815]
Length = 165
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D V +AV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 13 VSDILKVKG----NTLFTVTPDTEVNEAVTTMAEHDIGSLVVMEYGD---LVGMLTFREI 65
Query: 116 F 116
Sbjct: 66 I 66
>gi|222111496|ref|YP_002553760.1| signal transduction protein with cbs domains [Acidovorax ebreus
TPSY]
gi|221730940|gb|ACM33760.1| putative signal transduction protein with CBS domains [Acidovorax
ebreus TPSY]
Length = 145
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT+++IL+ K ADG DTV A++ M +GAL+V++ G+Q +AGI TER
Sbjct: 2 TTVAEILRTK---ADGQVHAVEPSDTVLTALRRMADKGIGALLVME-GDQ--IAGIFTER 55
>gi|319763071|ref|YP_004127008.1| CBS domain-containing protein [Alicycliphilus denitrificans BC]
gi|330825150|ref|YP_004388453.1| signal transduction protein [Alicycliphilus denitrificans K601]
gi|317117632|gb|ADV00121.1| CBS domain containing protein [Alicycliphilus denitrificans BC]
gi|329310522|gb|AEB84937.1| putative signal transduction protein with CBS domains
[Alicycliphilus denitrificans K601]
Length = 145
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT+++ILK+K D DTV A++ M + ++GAL+V++ GEQ +AGI TER
Sbjct: 2 TTVAEILKSK---PDAQVHCVAPSDTVLAALRLMAEKHIGALLVME-GEQ--IAGIFTER 55
>gi|365866512|ref|ZP_09406125.1| hypothetical protein SPW_6429 [Streptomyces sp. W007]
gi|364004058|gb|EHM25185.1| hypothetical protein SPW_6429 [Streptomyces sp. W007]
Length = 141
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT DI+ + + W +T+ A + M +HNVGAL V G+ + GIIT+R
Sbjct: 2 TTAKDIMHSGAR-------WIPAHETLDRAAQLMREHNVGALPVSANGDSDRMVGIITDR 54
Query: 114 GIFKAC 119
I C
Sbjct: 55 DIVIDC 60
>gi|307727770|ref|YP_003910983.1| putative signal transduction protein with CBS domains [Burkholderia
sp. CCGE1003]
gi|307588295|gb|ADN61692.1| putative signal transduction protein with CBS domains [Burkholderia
sp. CCGE1003]
Length = 147
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT++ +LK K + DD+VY+A++ M +GALVV + S+AGI+TER
Sbjct: 2 TTVAQLLKTKPNHT--TVFTIGADDSVYEAIRLMADKGIGALVVT---DGDSIAGIVTER 56
>gi|323529966|ref|YP_004232118.1| putative signal transduction protein with CBS domains [Burkholderia
sp. CCGE1001]
gi|323386968|gb|ADX59058.1| putative signal transduction protein with CBS domains [Burkholderia
sp. CCGE1001]
Length = 147
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT++ +LK K + DD+VY+A+K M +GALVV + ++AGI+TER
Sbjct: 2 TTVAQLLKTKPNHT--TVFTIGADDSVYEAIKLMADKGIGALVVT---DGDTIAGIVTER 56
>gi|254774594|ref|ZP_05216110.1| CBS domain-containing protein [Mycobacterium avium subsp. avium
ATCC 25291]
Length = 142
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + + D TV + + +T+ N+GA+VVV + V GI++ER +
Sbjct: 3 IADVLRNKG----AAVVTINPDATVRELIAGLTEQNIGAMVVVGA---EGVLGIVSERDV 55
Query: 116 FKACH 120
+ H
Sbjct: 56 VRQLH 60
>gi|41408317|ref|NP_961153.1| hypothetical protein MAP2219c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118466251|ref|YP_881000.1| CBS domain-containing protein [Mycobacterium avium 104]
gi|417750273|ref|ZP_12398641.1| putative signal-transduction protein containing cAMP-binding and
CBS [Mycobacterium avium subsp. paratuberculosis S397]
gi|440777872|ref|ZP_20956656.1| CBS domain-containing protein [Mycobacterium avium subsp.
paratuberculosis S5]
gi|41396673|gb|AAS04536.1| hypothetical protein MAP_2219c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118167538|gb|ABK68435.1| CBS domain protein [Mycobacterium avium 104]
gi|336458247|gb|EGO37228.1| putative signal-transduction protein containing cAMP-binding and
CBS [Mycobacterium avium subsp. paratuberculosis S397]
gi|436721788|gb|ELP45863.1| CBS domain-containing protein [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 142
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + + D TV + + +T+ N+GA+VVV + V GI++ER +
Sbjct: 3 IADVLRNKG----AAVVTINPDATVRELIAGLTEQNIGAMVVVGA---EGVLGIVSERDV 55
Query: 116 FKACH 120
+ H
Sbjct: 56 VRQLH 60
>gi|46200944|ref|ZP_00056074.2| COG0517: FOG: CBS domain [Magnetospirillum magnetotacticum MS-1]
Length = 146
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
ILK+K +G G + T D ++ DA + + QH +GA V+V G++ VAGI++ER I +
Sbjct: 6 ILKSKARG--GGIVSVTPDASIGDAARLLAQHKIGA-VLVMTGDR--VAGILSERDIVRG 60
Query: 119 CHN 121
+
Sbjct: 61 LAD 63
>gi|312602131|ref|YP_004021976.1| CBS domain containing protein [Burkholderia rhizoxinica HKI 454]
gi|312169445|emb|CBW76457.1| CBS domain containing protein [Burkholderia rhizoxinica HKI 454]
Length = 185
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
G T++ ILK+K D + VYDA+K M + +GALVV + G+ + GI
Sbjct: 37 GHPMATVAQILKSK---PDTTVYTIDASALVYDAMKRMAEKQIGALVVTENGK---IVGI 90
Query: 110 ITER 113
+TER
Sbjct: 91 VTER 94
>gi|452949833|gb|EME55299.1| IMP dehydrogenase [Rhodococcus ruber BKS 20-38]
Length = 142
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG D +V + + ++ +HNVGALVVV E +V GI++ER +
Sbjct: 3 IADVLRNKGP----VVATIEPDRSVEEMIGTLARHNVGALVVV---EGDAVIGIVSERDV 55
Query: 116 FKACHN 121
+ H+
Sbjct: 56 VRRLHH 61
>gi|256810616|ref|YP_003127985.1| putative signal transduction protein with CBS domains
[Methanocaldococcus fervens AG86]
gi|256793816|gb|ACV24485.1| putative signal transduction protein with CBS domains
[Methanocaldococcus fervens AG86]
Length = 194
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+ T D T+YD MT++N+GA+V+V E GI+TER I K
Sbjct: 18 ITATKDMTIYDIANIMTENNIGAVVIV---ENNKPVGILTERDIVK 60
>gi|158425292|ref|YP_001526584.1| hypothetical protein AZC_3668 [Azorhizobium caulinodans ORS 571]
gi|158332181|dbj|BAF89666.1| hypothetical protein AZC_3668 [Azorhizobium caulinodans ORS 571]
Length = 143
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T+S IL +K S + + D ++ DAVKS+++H +GA+V V + +AGI++ER
Sbjct: 2 TVSAILNSK----PSSMVTISPDASLTDAVKSLSEHRIGAIVAVD--DNGRLAGILSERD 55
Query: 115 IFK 117
+ +
Sbjct: 56 VVR 58
>gi|284033114|ref|YP_003383045.1| putative signal transduction protein with CBS domains [Kribbella
flavida DSM 17836]
gi|283812407|gb|ADB34246.1| putative signal transduction protein with CBS domains [Kribbella
flavida DSM 17836]
Length = 141
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + + + TV + + + +HNVGALVV G SVAGI++ER +
Sbjct: 3 INDVLRGKGN----QVVTISPEATVTELLALLAEHNVGALVVSPDG--TSVAGIVSERDV 56
Query: 116 FKACHN 121
+ ++
Sbjct: 57 VRLLNS 62
>gi|261403128|ref|YP_003247352.1| putative signal transduction protein with CBS domains
[Methanocaldococcus vulcanius M7]
gi|261370121|gb|ACX72870.1| putative signal transduction protein with CBS domains
[Methanocaldococcus vulcanius M7]
Length = 194
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
D +VYD MT+HN+GA+V+V E GI+TER I K
Sbjct: 23 DMSVYDIANIMTEHNIGAVVIV---EDNKPVGILTERDIVK 60
>gi|257075658|ref|ZP_05570019.1| CBS domain-containing protein [Ferroplasma acidarmanus fer1]
Length = 133
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
T+YD K MT+ N G+L++ G +S+ GI+TER I KA
Sbjct: 13 TIYDGAKKMTEENKGSLLL---GSAESMKGIVTERDIIKAI 50
>gi|167562988|ref|ZP_02355904.1| CBS domain protein [Burkholderia oklahomensis EO147]
gi|167570179|ref|ZP_02363053.1| CBS domain protein [Burkholderia oklahomensis C6786]
Length = 154
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + GI+T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDMPLRNAVDTMAEHDIGSLVVMEYGD---LVGILTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|422317676|ref|ZP_16398976.1| hypothetical protein HMPREF0005_03245 [Achromobacter xylosoxidans
C54]
gi|317407797|gb|EFV87724.1| hypothetical protein HMPREF0005_03245 [Achromobacter xylosoxidans
C54]
Length = 146
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 39/58 (67%), Gaps = 6/58 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+++IL+ K A+ + + + D +VYDA+K+M + ++GA+VV + E V G++TER
Sbjct: 4 VAEILREK---ANPAVVTVSPDSSVYDAIKTMAERSIGAVVVAQGDE---VLGMLTER 55
>gi|383935285|ref|ZP_09988722.1| CBS domain-containing protein [Rheinheimera nanhaiensis E407-8]
gi|383703701|dbj|GAB58813.1| CBS domain-containing protein [Rheinheimera nanhaiensis E407-8]
Length = 619
Score = 40.0 bits (92), Expect = 0.20, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 35 SSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA 94
S R +S +AR E S IS +L+ + S TV+ A + MT+H V
Sbjct: 131 SERRKSTKAARQTETDLHSAQISSLLQRQPVCLPAS-------ATVWQAAQIMTEHGVSC 183
Query: 95 LVVVKPG--EQKSVAGIITERGI 115
L+++ EQ +AGIIT+R I
Sbjct: 184 LLILHDDDTEQGKLAGIITDRDI 206
>gi|325272356|ref|ZP_08138756.1| CBS domain-containing protein [Pseudomonas sp. TJI-51]
gi|324102516|gb|EGB99962.1| CBS domain-containing protein [Pseudomonas sp. TJI-51]
Length = 145
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ ILK K + + DD+V DA+K + + N+GAL VV E K V GI++ER
Sbjct: 3 TVEQILKTKSQHQ--TVYTIGPDDSVLDALKMLAEKNIGALPVV---EGKQVVGIVSER 56
>gi|226359682|ref|YP_002777460.1| hypothetical protein ROP_02680 [Rhodococcus opacus B4]
gi|226238167|dbj|BAH48515.1| hypothetical protein [Rhodococcus opacus B4]
Length = 142
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L+ KG + + + +V + + +HNVGALVV E +V GI+TER +
Sbjct: 3 ISDVLRNKGP----AVVTVDPEMSVSTLIGELARHNVGALVVT---ENDAVVGIVTERDV 55
Query: 116 FKACH 120
+ H
Sbjct: 56 VRRIH 60
>gi|53719576|ref|YP_108562.1| hypothetical protein BPSL1964 [Burkholderia pseudomallei K96243]
gi|53725416|ref|YP_102671.1| hypothetical protein BMA0944 [Burkholderia mallei ATCC 23344]
gi|67642694|ref|ZP_00441447.1| CBS domain protein [Burkholderia mallei GB8 horse 4]
gi|76808985|ref|YP_333265.1| CBS domain-containing protein [Burkholderia pseudomallei 1710b]
gi|121599268|ref|YP_992809.1| hypothetical protein BMASAVP1_A1478 [Burkholderia mallei SAVP1]
gi|124383341|ref|YP_001026403.1| hypothetical protein BMA10229_A0404 [Burkholderia mallei NCTC
10229]
gi|126439295|ref|YP_001058728.1| hypothetical protein BURPS668_1687 [Burkholderia pseudomallei 668]
gi|126451035|ref|YP_001080325.1| hypothetical protein BMA10247_0759 [Burkholderia mallei NCTC 10247]
gi|126454211|ref|YP_001065981.1| hypothetical protein BURPS1106A_1710 [Burkholderia pseudomallei
1106a]
gi|134282216|ref|ZP_01768921.1| CBS domain protein [Burkholderia pseudomallei 305]
gi|167002921|ref|ZP_02268711.1| CBS domain protein [Burkholderia mallei PRL-20]
gi|167719875|ref|ZP_02403111.1| CBS domain protein [Burkholderia pseudomallei DM98]
gi|167738877|ref|ZP_02411651.1| CBS domain protein [Burkholderia pseudomallei 14]
gi|167816100|ref|ZP_02447780.1| CBS domain protein [Burkholderia pseudomallei 91]
gi|167824472|ref|ZP_02455943.1| CBS domain protein [Burkholderia pseudomallei 9]
gi|167846008|ref|ZP_02471516.1| CBS domain protein [Burkholderia pseudomallei B7210]
gi|167894582|ref|ZP_02481984.1| CBS domain protein [Burkholderia pseudomallei 7894]
gi|167902984|ref|ZP_02490189.1| CBS domain protein [Burkholderia pseudomallei NCTC 13177]
gi|167911224|ref|ZP_02498315.1| CBS domain protein [Burkholderia pseudomallei 112]
gi|167919245|ref|ZP_02506336.1| CBS domain protein [Burkholderia pseudomallei BCC215]
gi|217423669|ref|ZP_03455170.1| CBS domain protein [Burkholderia pseudomallei 576]
gi|226192922|ref|ZP_03788534.1| CBS domain protein [Burkholderia pseudomallei Pakistan 9]
gi|237811993|ref|YP_002896444.1| CBS domain protein [Burkholderia pseudomallei MSHR346]
gi|242315143|ref|ZP_04814159.1| CBS domain protein [Burkholderia pseudomallei 1106b]
gi|254178427|ref|ZP_04885082.1| CBS domain protein [Burkholderia mallei ATCC 10399]
gi|254180023|ref|ZP_04886622.1| CBS domain protein [Burkholderia pseudomallei 1655]
gi|254188567|ref|ZP_04895078.1| CBS domain protein [Burkholderia pseudomallei Pasteur 52237]
gi|254197241|ref|ZP_04903663.1| CBS domain protein [Burkholderia pseudomallei S13]
gi|254199608|ref|ZP_04905974.1| CBS domain protein [Burkholderia mallei FMH]
gi|254205926|ref|ZP_04912278.1| CBS domain protein [Burkholderia mallei JHU]
gi|254261201|ref|ZP_04952255.1| CBS domain protein [Burkholderia pseudomallei 1710a]
gi|254297857|ref|ZP_04965310.1| CBS domain protein [Burkholderia pseudomallei 406e]
gi|254358673|ref|ZP_04974946.1| CBS domain protein [Burkholderia mallei 2002721280]
gi|386861998|ref|YP_006274947.1| hypothetical protein BP1026B_I1931 [Burkholderia pseudomallei
1026b]
gi|403518411|ref|YP_006652544.1| hypothetical protein BPC006_I1757 [Burkholderia pseudomallei
BPC006]
gi|418387564|ref|ZP_12967419.1| CBS domain-containing protein [Burkholderia pseudomallei 354a]
gi|418534145|ref|ZP_13099994.1| CBS domain-containing protein [Burkholderia pseudomallei 1026a]
gi|418541190|ref|ZP_13106687.1| CBS domain-containing protein [Burkholderia pseudomallei 1258a]
gi|418547430|ref|ZP_13112589.1| CBS domain-containing protein [Burkholderia pseudomallei 1258b]
gi|418553610|ref|ZP_13118429.1| CBS domain-containing protein [Burkholderia pseudomallei 354e]
gi|52209990|emb|CAH35963.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52428839|gb|AAU49432.1| CBS domain protein [Burkholderia mallei ATCC 23344]
gi|76578438|gb|ABA47913.1| CBS domain protein [Burkholderia pseudomallei 1710b]
gi|121228078|gb|ABM50596.1| CBS domain protein [Burkholderia mallei SAVP1]
gi|124291361|gb|ABN00630.1| CBS domain protein [Burkholderia mallei NCTC 10229]
gi|126218788|gb|ABN82294.1| CBS domain protein [Burkholderia pseudomallei 668]
gi|126227853|gb|ABN91393.1| CBS domain protein [Burkholderia pseudomallei 1106a]
gi|126243905|gb|ABO06998.1| CBS domain protein [Burkholderia mallei NCTC 10247]
gi|134246254|gb|EBA46343.1| CBS domain protein [Burkholderia pseudomallei 305]
gi|147749204|gb|EDK56278.1| CBS domain protein [Burkholderia mallei FMH]
gi|147753369|gb|EDK60434.1| CBS domain protein [Burkholderia mallei JHU]
gi|148027800|gb|EDK85821.1| CBS domain protein [Burkholderia mallei 2002721280]
gi|157807702|gb|EDO84872.1| CBS domain protein [Burkholderia pseudomallei 406e]
gi|157936246|gb|EDO91916.1| CBS domain protein [Burkholderia pseudomallei Pasteur 52237]
gi|160699466|gb|EDP89436.1| CBS domain protein [Burkholderia mallei ATCC 10399]
gi|169653982|gb|EDS86675.1| CBS domain protein [Burkholderia pseudomallei S13]
gi|184210563|gb|EDU07606.1| CBS domain protein [Burkholderia pseudomallei 1655]
gi|217393527|gb|EEC33548.1| CBS domain protein [Burkholderia pseudomallei 576]
gi|225935012|gb|EEH30987.1| CBS domain protein [Burkholderia pseudomallei Pakistan 9]
gi|237503401|gb|ACQ95719.1| CBS domain protein [Burkholderia pseudomallei MSHR346]
gi|238523883|gb|EEP87319.1| CBS domain protein [Burkholderia mallei GB8 horse 4]
gi|242138382|gb|EES24784.1| CBS domain protein [Burkholderia pseudomallei 1106b]
gi|243061467|gb|EES43653.1| CBS domain protein [Burkholderia mallei PRL-20]
gi|254219890|gb|EET09274.1| CBS domain protein [Burkholderia pseudomallei 1710a]
gi|385358699|gb|EIF64684.1| CBS domain-containing protein [Burkholderia pseudomallei 1258a]
gi|385360004|gb|EIF65950.1| CBS domain-containing protein [Burkholderia pseudomallei 1026a]
gi|385361215|gb|EIF67103.1| CBS domain-containing protein [Burkholderia pseudomallei 1258b]
gi|385371448|gb|EIF76627.1| CBS domain-containing protein [Burkholderia pseudomallei 354e]
gi|385376252|gb|EIF80951.1| CBS domain-containing protein [Burkholderia pseudomallei 354a]
gi|385659126|gb|AFI66549.1| CBS domain-containing protein [Burkholderia pseudomallei 1026b]
gi|403074053|gb|AFR15633.1| CBS domain-containing protein [Burkholderia pseudomallei BPC006]
Length = 154
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + AV +M +H++G+LVV++ G+ + GI+T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTPLRSAVDTMAEHDIGSLVVMEYGD---LVGILTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|83719350|ref|YP_443131.1| CBS domain-containing protein [Burkholderia thailandensis E264]
gi|167582140|ref|ZP_02375014.1| CBS domain protein [Burkholderia thailandensis TXDOH]
gi|167620299|ref|ZP_02388930.1| CBS domain protein [Burkholderia thailandensis Bt4]
gi|257139361|ref|ZP_05587623.1| CBS domain-containing protein [Burkholderia thailandensis E264]
gi|83653175|gb|ABC37238.1| CBS domain protein [Burkholderia thailandensis E264]
Length = 154
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + AV +M +H++G+LVV++ G+ + GI+T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTPLRSAVDTMAEHDIGSLVVMEYGD---LVGILTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|402771426|ref|YP_006590963.1| signal transduction protein with CBS domains [Methylocystis sp.
SC2]
gi|401773446|emb|CCJ06312.1| Putative signal transduction protein with CBS domains
[Methylocystis sp. SC2]
Length = 143
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 6/65 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
TIS+IL KG+ + + D T+ +A + M ++ +GALV++ G + +AG+I ER
Sbjct: 2 TISNILAEKGR----EVVTASADTTLQEAAQLMMRYRIGALVILDDGGR--LAGLIAERD 55
Query: 115 IFKAC 119
I A
Sbjct: 56 IVSAV 60
>gi|167836867|ref|ZP_02463750.1| CBS domain protein [Burkholderia thailandensis MSMB43]
gi|424904149|ref|ZP_18327659.1| hypothetical protein A33K_15550 [Burkholderia thailandensis MSMB43]
gi|390930127|gb|EIP87529.1| hypothetical protein A33K_15550 [Burkholderia thailandensis MSMB43]
Length = 154
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + AV +M +H++G+LVV++ G+ + GI+T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTPLRSAVDTMAEHDIGSLVVMEYGD---LVGILTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|390571435|ref|ZP_10251676.1| CBS domain-containing protein [Burkholderia terrae BS001]
gi|420248667|ref|ZP_14751984.1| CBS domain-containing protein [Burkholderia sp. BT03]
gi|389936538|gb|EIM98425.1| CBS domain-containing protein [Burkholderia terrae BS001]
gi|398067357|gb|EJL58875.1| CBS domain-containing protein [Burkholderia sp. BT03]
Length = 155
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKLKG----NTLFTVTPDSPLNEAVNTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|120404861|ref|YP_954690.1| signal-transduction protein [Mycobacterium vanbaalenii PYR-1]
gi|119957679|gb|ABM14684.1| putative signal-transduction protein with CBS domains
[Mycobacterium vanbaalenii PYR-1]
Length = 142
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L+ KG + T + +V + ++ HN+GA+VVV P + GI++ER +
Sbjct: 3 ISDVLRNKG----ATVATITPETSVAGLLTELSVHNIGAMVVVSP---DGLLGIVSERDV 55
Query: 116 FKACHN 121
+ H+
Sbjct: 56 VRKLHD 61
>gi|293606465|ref|ZP_06688823.1| CBS domain protein [Achromobacter piechaudii ATCC 43553]
gi|292815088|gb|EFF74211.1| CBS domain protein [Achromobacter piechaudii ATCC 43553]
Length = 154
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++IL+ K A + + D +V+DA+K+M + +GA+VVV+ GE +V G+++ER
Sbjct: 11 TVAEILREKSNNA---VVTVSPDSSVFDAIKTMAERRIGAVVVVQ-GE--TVLGMLSER 63
>gi|167587382|ref|ZP_02379770.1| putative transcriptional regulator, XRE family protein
[Burkholderia ubonensis Bu]
Length = 154
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK KG + T D + +AV +M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILKVKG----NTLFTVTPDTPLREAVDTMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 F 116
Sbjct: 56 I 56
>gi|239814685|ref|YP_002943595.1| CBS domain containing protein [Variovorax paradoxus S110]
gi|239801262|gb|ACS18329.1| CBS domain containing protein [Variovorax paradoxus S110]
Length = 146
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDIL+ KG + T DD + +AVK+M + ++G+LVV++ G+ + G++T R +
Sbjct: 3 VSDILRVKG----NTLFTITPDDLLAEAVKTMAEKDIGSLVVMEHGD---LVGMLTFREV 55
Query: 116 FKA 118
A
Sbjct: 56 ILA 58
>gi|399033777|ref|ZP_10732321.1| putative signal-transduction protein containing cAMP-binding and
CBS domain-containing protein [Flavobacterium sp. CF136]
gi|398067844|gb|EJL59317.1| putative signal-transduction protein containing cAMP-binding and
CBS domain-containing protein [Flavobacterium sp. CF136]
Length = 141
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ IL AKGK S L TT VY+A+K M + N+GA++V+ E K GI++ER
Sbjct: 2 TVNQILNAKGKNV-YSVLSSTT---VYEALKVMGEKNIGAILVMDGSELK---GILSER 53
>gi|327310289|ref|YP_004337186.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
gi|326946768|gb|AEA11874.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
Length = 140
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
TV A ++M +NVG LV+V P E K G+I+ER I +
Sbjct: 19 TVEQAAEAMANNNVGLLVIVDPKEPKKPIGVISERDIIRTI 59
>gi|375141344|ref|YP_005001993.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium rhodesiae NBB3]
gi|359821965|gb|AEV74778.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium rhodesiae NBB3]
Length = 142
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG S T + +V + ++ HN+GA+VVV P V GI++ER +
Sbjct: 3 IADVLRNKG----ASVATITPETSVSGLLTELSVHNIGAMVVVSP---DGVIGIVSERDV 55
Query: 116 FKACHN 121
+A
Sbjct: 56 VRALQT 61
>gi|126460002|ref|YP_001056280.1| signal-transduction protein [Pyrobaculum calidifontis JCM 11548]
gi|126249723|gb|ABO08814.1| putative signal-transduction protein with CBS domains [Pyrobaculum
calidifontis JCM 11548]
Length = 135
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T+ +A +++T H VGA+VVV P GI++ER I KA
Sbjct: 26 TLLEAAEALTSHGVGAVVVVDPSSPDKPIGILSERDIVKA 65
>gi|283779970|ref|YP_003370725.1| signal transduction protein with CBS domains [Pirellula staleyi DSM
6068]
gi|283438423|gb|ADB16865.1| putative signal transduction protein with CBS domains [Pirellula
staleyi DSM 6068]
Length = 145
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVK-PGEQKSVAGIITERG 114
+ DIL+ KG L C DT+ V+ + ++N+G+LVV + +++ + GIITER
Sbjct: 3 VRDILQTKGSAV----LTCQPGDTLARVVELLVRYNIGSLVVRESKADRQPMLGIITERD 58
Query: 115 IFK 117
+ +
Sbjct: 59 LLR 61
>gi|395650715|ref|ZP_10438565.1| hypothetical protein Pext1s1_19137 [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 146
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 8/61 (13%)
Query: 55 TISDILKAKG-KGADGSWL-WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
T++++LKAK K + + W D TV++A+ M+ NVGAL VVK GE V GII+E
Sbjct: 3 TVAEVLKAKDLKNQEVHTIEW---DHTVFEALVVMSSKNVGALPVVKHGE---VVGIISE 56
Query: 113 R 113
R
Sbjct: 57 R 57
>gi|373957173|ref|ZP_09617133.1| regulatory protein TetR [Mucilaginibacter paludis DSM 18603]
gi|373893773|gb|EHQ29670.1| regulatory protein TetR [Mucilaginibacter paludis DSM 18603]
Length = 203
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 46 MEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV-----KP 100
E HGF TI DI KA GK + + T + + DAV + + L+ + K
Sbjct: 22 FELHGFRRVTIDDIAKAIGKARSSLYYYYKTKEEILDAVIAAEIRELVKLIAIAISEAKT 81
Query: 101 GEQKSVAGIITE-------RGIFKAC 119
E+K A +T+ RG F A
Sbjct: 82 SEEKIKAFFLTDLRTILEKRGFFNAL 107
>gi|406659488|ref|ZP_11067626.1| CBS domain protein [Streptococcus iniae 9117]
gi|405577597|gb|EKB51745.1| CBS domain protein [Streptococcus iniae 9117]
Length = 220
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 36 SRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGAL 95
S+ S+S M + T I DI+ K + + D ++ DA+ M QH +G L
Sbjct: 58 SKATSLSIYEMN-YLLNKTKIRDIMIKK-------VITVSPDASLEDAIYLMLQHKIGVL 109
Query: 96 VVVKPGEQKSVAGIITERGIFKA 118
V+ GE + GIIT+R +FKA
Sbjct: 110 PVLDEGE---LCGIITDRDVFKA 129
>gi|56478309|ref|YP_159898.1| hypothetical protein ebB175 [Aromatoleum aromaticum EbN1]
gi|56314352|emb|CAI08997.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 147
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+++ ILK K D + D +V+DA+ M +HNVGAL+V+ E + +AGI++ER
Sbjct: 3 SVAAILKEK---PDPTVHTIGPDASVFDALGRMAEHNVGALLVM---EGERLAGIVSER 55
>gi|344999277|ref|YP_004802131.1| CBS domain containing protein [Streptomyces sp. SirexAA-E]
gi|344314903|gb|AEN09591.1| CBS domain containing protein [Streptomyces sp. SirexAA-E]
Length = 141
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT DI+ + W +T+ A + M H VGAL V GEQ + GI+T+R
Sbjct: 2 TTAKDIMSTGAQ-------WIPAHETLDRAAQMMRDHKVGALPVSANGEQDRMVGIVTDR 54
Query: 114 GIFKAC 119
I C
Sbjct: 55 DIVIKC 60
>gi|374607424|ref|ZP_09680225.1| putative signal transduction protein with CBS domains
[Mycobacterium tusciae JS617]
gi|373555260|gb|EHP81830.1| putative signal transduction protein with CBS domains
[Mycobacterium tusciae JS617]
Length = 142
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG S T + +V + ++ HN+GA+VVV P V GI++ER +
Sbjct: 3 IADVLRNKG----ASVATITPETSVSGLLTELSVHNIGAMVVVSP---DGVIGIVSERDV 55
Query: 116 FKACH 120
+A
Sbjct: 56 VRALQ 60
>gi|171184891|ref|YP_001793810.1| signal-transduction protein [Pyrobaculum neutrophilum V24Sta]
gi|170934103|gb|ACB39364.1| putative signal-transduction protein with CBS domains [Pyrobaculum
neutrophilum V24Sta]
Length = 130
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
+T+ + + + +N+GALVVV P K GIITER + +A
Sbjct: 23 ETLVEVAEKLATNNIGALVVVNPQNTKKPVGIITERDVVRAI 64
>gi|357021739|ref|ZP_09083970.1| signal-transduction protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356479487|gb|EHI12624.1| signal-transduction protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 132
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 87 MTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
M HNVGA+VVV+P +AG+++ER + + H
Sbjct: 17 MATHNVGAMVVVRPDGSGGIAGMVSERDVVRKLH 50
>gi|187924051|ref|YP_001895693.1| hypothetical protein Bphyt_2066 [Burkholderia phytofirmans PsJN]
gi|187715245|gb|ACD16469.1| CBS domain containing protein [Burkholderia phytofirmans PsJN]
Length = 163
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+++ L++K +W T T VYDAV M VGAL+VV G VAGI+TER
Sbjct: 3 SVAQFLRSKAS----QTVWSTQASTSVYDAVAIMAHRRVGALIVVHEGR---VAGIVTER 55
>gi|320161957|ref|YP_004175182.1| hypothetical protein ANT_25560 [Anaerolinea thermophila UNI-1]
gi|319995811|dbj|BAJ64582.1| hypothetical protein ANT_25560 [Anaerolinea thermophila UNI-1]
Length = 140
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 55 TISDILKAKGKGADGSWLWCT-TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ IL+ KG S +W D TV+DA++ M +VGALVV+ E V GII+ER
Sbjct: 4 TVRHILEVKG-----SDVWSIGPDATVFDALRMMADKDVGALVVM---ENDKVVGIISER 55
>gi|168700192|ref|ZP_02732469.1| CBS domain containing protein [Gemmata obscuriglobus UQM 2246]
Length = 155
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 73 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
W DDTV AV+ M NVG L+V EQ V GI TER +
Sbjct: 22 WVDADDTVARAVEEMRAGNVGCLLVT---EQGRVVGIFTERDLL 62
>gi|221196034|ref|ZP_03569081.1| CBS domain protein [Burkholderia multivorans CGD2M]
gi|221202708|ref|ZP_03575727.1| CBS domain protein [Burkholderia multivorans CGD2]
gi|221176642|gb|EEE09070.1| CBS domain protein [Burkholderia multivorans CGD2]
gi|221182588|gb|EEE14988.1| CBS domain protein [Burkholderia multivorans CGD2M]
Length = 149
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 6/59 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
++ ILKAK G ++ T D VYDA+K M+ +GAL+V+ + +AGI+TER
Sbjct: 1 MAQILKAKPDS--GRTIYTVTKTDLVYDAIKLMSDKGIGALLVM---DGDDIAGIVTER 54
>gi|325290521|ref|YP_004266702.1| hypothetical protein Sgly_2416 [Syntrophobotulus glycolicus DSM
8271]
gi|324965922|gb|ADY56701.1| CBS domain containing protein [Syntrophobotulus glycolicus DSM
8271]
Length = 210
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T+YDAV +M +NVG+L+VV G+++ + G+++ + I KA
Sbjct: 92 TIYDAVVAMFTNNVGSLIVV--GQERELRGMVSRKDILKA 129
>gi|375096369|ref|ZP_09742634.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Saccharomonospora marina XMU15]
gi|374657102|gb|EHR51935.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Saccharomonospora marina XMU15]
Length = 147
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
I+D+L+ KG S + T T V + + + +HNVGALVVV +VAGI++ER
Sbjct: 3 IADLLRRKG-----SMVATVTPRTRVSELLARLAEHNVGALVVVDGA--GAVAGIVSERD 55
Query: 115 IFKACHN 121
+ + H
Sbjct: 56 VVRRLHQ 62
>gi|421530746|ref|ZP_15977211.1| hypothetical protein PPS11_38130 [Pseudomonas putida S11]
gi|402211864|gb|EJT83296.1| hypothetical protein PPS11_38130 [Pseudomonas putida S11]
Length = 145
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ ILK K + + DD+V DA+K + + NVGAL VV E V GI++ER
Sbjct: 3 TVEQILKTKSQ--HQTVYTIGPDDSVLDALKMLAEKNVGALPVV---EANQVVGIVSER 56
>gi|159041203|ref|YP_001540455.1| signal-transduction protein [Caldivirga maquilingensis IC-167]
gi|157920038|gb|ABW01465.1| putative signal-transduction protein with CBS domains [Caldivirga
maquilingensis IC-167]
Length = 143
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 80 VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
V +A+K M +NVG +V+V E K V G+I+ER + +A
Sbjct: 21 VMEAIKLMADNNVGLVVIVDSPENKKVLGVISERDVIRAL 60
>gi|395803543|ref|ZP_10482789.1| signal-transduction protein [Flavobacterium sp. F52]
gi|395434355|gb|EJG00303.1| signal-transduction protein [Flavobacterium sp. F52]
Length = 141
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ ILKAKG+ + ++ TVYDA+K M + N+GA++V+ + + GI++ER
Sbjct: 2 TVDQILKAKGRNVYSIF----SNLTVYDALKVMGEKNIGAILVM---DDNVLKGILSER 53
>gi|259418480|ref|ZP_05742398.1| CBS domain protein [Silicibacter sp. TrichCH4B]
gi|259345875|gb|EEW57719.1| CBS domain protein [Silicibacter sp. TrichCH4B]
Length = 174
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T+ D+L K G W DTV AV+ + +GAL+V P Q + GI++ER
Sbjct: 34 TVGDVLANKS----GDLFWINPQDTVAKAVEVLRDKGIGALLVKNP--QGELVGILSERD 87
Query: 115 IFK 117
I +
Sbjct: 88 IVR 90
>gi|386847341|ref|YP_006265354.1| Inosine-5'-monophosphate dehydrogenase [Actinoplanes sp. SE50/110]
gi|359834845|gb|AEV83286.1| Inosine-5'-monophosphate dehydrogenase [Actinoplanes sp. SE50/110]
Length = 145
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISDIL+ KG G + D +V + + H +GA +V + G +VAGI++ER I
Sbjct: 3 ISDILRVKGTGV----VTVPPDLSVEGLIAKLAHHRIGAAIVSRDG--TAVAGIVSERDI 56
Query: 116 FKAC 119
+A
Sbjct: 57 VRAL 60
>gi|327311333|ref|YP_004338230.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
gi|326947812|gb|AEA12918.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
Length = 128
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
++CTT DT+ AV M +N+GA++VV + S GI TER + K
Sbjct: 12 VYCTTRDTIRCAVSKMYAYNIGAVLVVD--DVGSPVGIFTERDLVK 55
>gi|124028007|ref|YP_001013327.1| hypothetical protein Hbut_1145 [Hyperthermus butylicus DSM 5456]
gi|123978701|gb|ABM80982.1| conserved archaeal protein [Hyperthermus butylicus DSM 5456]
Length = 153
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 9/70 (12%)
Query: 48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
E E ISD++ + + C DDTV DA + M ++++G++VVV ++ ++
Sbjct: 6 EIAPEELKISDVMTP-------NVITCKPDDTVVDAARKMAKYSIGSVVVVD--DKGTIL 56
Query: 108 GIITERGIFK 117
GI+TE I +
Sbjct: 57 GILTEGDIVR 66
>gi|404441664|ref|ZP_11006848.1| signal-transduction protein [Mycobacterium vaccae ATCC 25954]
gi|403658257|gb|EJZ13000.1| signal-transduction protein [Mycobacterium vaccae ATCC 25954]
Length = 142
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L+ KG + T + +V + ++ HN+GA+VVV P + GI++ER +
Sbjct: 3 ISDVLRNKG----AAVATITPETSVAGLLTELSVHNIGAMVVVSP---DGLLGIVSERDV 55
Query: 116 FKACHN 121
+ H+
Sbjct: 56 VRKLHD 61
>gi|440738083|ref|ZP_20917628.1| hypothetical protein A986_07475 [Pseudomonas fluorescens BRIP34879]
gi|447916261|ref|YP_007396829.1| hypothetical protein H045_06295 [Pseudomonas poae RE*1-1-14]
gi|440381426|gb|ELQ17958.1| hypothetical protein A986_07475 [Pseudomonas fluorescens BRIP34879]
gi|445200124|gb|AGE25333.1| hypothetical protein H045_06295 [Pseudomonas poae RE*1-1-14]
Length = 146
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 55 TISDILKAKGKGADG--SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
T++ +LKAK + + W D TV++A+ M++ NVGAL VVK G +V GII+E
Sbjct: 3 TVAQLLKAKDQKHHDVHTIQW---DHTVFEALVRMSEKNVGALPVVKDG---AVVGIISE 56
Query: 113 R 113
R
Sbjct: 57 R 57
>gi|359688647|ref|ZP_09258648.1| signal transduction protein [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418749444|ref|ZP_13305734.1| CBS domain protein [Leptospira licerasiae str. MMD4847]
gi|418755846|ref|ZP_13312036.1| CBS domain protein [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|384117171|gb|EIE03426.1| CBS domain protein [Leptospira licerasiae serovar Varillal str. VAR
010]
gi|404274915|gb|EJZ42231.1| CBS domain protein [Leptospira licerasiae str. MMD4847]
Length = 146
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ DIL+ K D L TV++A++ MT++++G+++V+K G+ +AGI TER +
Sbjct: 3 VKDILEKK----DRKILSVEPSTTVWEAIRFMTKYDIGSVIVLKEGK---LAGIFTERDL 55
Query: 116 F 116
Sbjct: 56 L 56
>gi|333902040|ref|YP_004475913.1| signal transduction protein with CBS domains [Pseudomonas fulva
12-X]
gi|333117305|gb|AEF23819.1| putative signal transduction protein with CBS domains [Pseudomonas
fulva 12-X]
Length = 145
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++D+LK+K + T D +V+ AVK M + +GALVV+ E + +AGI++ER
Sbjct: 4 TVADVLKSK---PISNVYSVTPDSSVFAAVKLMAEKGIGALVVL---EGERLAGIVSER 56
>gi|357385164|ref|YP_004899888.1| inosine-5'-monophosphate dehydrogenase [Pelagibacterium
halotolerans B2]
gi|351593801|gb|AEQ52138.1| inosine-5'-monophosphate dehydrogenase [Pelagibacterium
halotolerans B2]
Length = 141
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 5/53 (9%)
Query: 65 KGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
KG+D + +D T+ D + ++ +HN+GA+VVV G+ V GII+ER I +
Sbjct: 10 KGSD--VVTVRSDSTIGDLIATLARHNIGAVVVVDNGK---VEGIISERDIVR 57
>gi|357413771|ref|YP_004925507.1| signal transduction protein with CBS domains [Streptomyces
flavogriseus ATCC 33331]
gi|320011140|gb|ADW05990.1| putative signal transduction protein with CBS domains [Streptomyces
flavogriseus ATCC 33331]
Length = 141
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 73 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
W +T+ A + M H VGAL V GE+ + GIIT+R I C
Sbjct: 14 WIPAHETLDRAAQMMRDHTVGALPVSAGGEKDRMVGIITDRDIVTKC 60
>gi|326317834|ref|YP_004235506.1| CBS domain-containing protein [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323374670|gb|ADX46939.1| CBS domain containing protein [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 149
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T ++DIL++K A D++ DA++ M +GAL+V+ + KS+AGI+TER
Sbjct: 2 TAVADILRSK---AHQEVFTIAPSDSMLDALRLMADKGIGALLVM---DGKSIAGIVTER 55
>gi|404400937|ref|ZP_10992521.1| hypothetical protein PfusU_14281 [Pseudomonas fuscovaginae UPB0736]
Length = 147
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++++LK KG + D TV++A+ M + NVGAL VV E+ V GII+ER
Sbjct: 3 TVAELLKLKGSQRQEVY-TVRNDHTVFEALIKMAEKNVGALPVV--DERGLVVGIISER 58
>gi|284989355|ref|YP_003407909.1| putative signal transduction protein with CBS domains
[Geodermatophilus obscurus DSM 43160]
gi|284062600|gb|ADB73538.1| putative signal transduction protein with CBS domains
[Geodermatophilus obscurus DSM 43160]
Length = 143
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 10/68 (14%)
Query: 56 ISDILKAKGKGADGSWLWCTTDD--TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
IS +L+ KG G T D +V A+ + +H VGALVV G +SV GI++ER
Sbjct: 3 ISQLLRRKGAG------VATVDAAASVRTALALLAEHGVGALVVSADG--RSVDGIVSER 54
Query: 114 GIFKACHN 121
+ +A H
Sbjct: 55 DVVRALHE 62
>gi|94310080|ref|YP_583290.1| hypothetical protein Rmet_1135 [Cupriavidus metallidurans CH34]
gi|93353932|gb|ABF08021.1| conserved hypothetical protein [Cupriavidus metallidurans CH34]
Length = 151
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDIL+ KG + T D + AV++M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILQLKG----NTLFTVTPDTPLMQAVQAMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 FK 117
+
Sbjct: 56 IE 57
>gi|254440558|ref|ZP_05054052.1| hypothetical protein OA307_5428 [Octadecabacter antarcticus 307]
gi|198256004|gb|EDY80318.1| hypothetical protein OA307_5428 [Octadecabacter antarcticus 307]
Length = 145
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+S ILK+K A G L T+D V DA + M++ +GA+V+ G + AGI++ER I
Sbjct: 3 VSQILKSK---ATGGVLTLTSDANVADAARIMSEKRIGAVVISDDG-GATPAGILSERDI 58
Query: 116 FK 117
+
Sbjct: 59 VR 60
>gi|431800237|ref|YP_007227140.1| hypothetical protein B479_01395 [Pseudomonas putida HB3267]
gi|430791002|gb|AGA71197.1| hypothetical protein B479_01395 [Pseudomonas putida HB3267]
Length = 145
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ ILK K + + DD+V DA+K + + NVGAL VV E V GI++ER
Sbjct: 3 TVEQILKTKSQHQ--TVYTIGPDDSVLDALKMLAEKNVGALPVV---EANQVVGIVSER 56
>gi|381166724|ref|ZP_09875938.1| CBS domain [Phaeospirillum molischianum DSM 120]
gi|380684297|emb|CCG40750.1| CBS domain [Phaeospirillum molischianum DSM 120]
Length = 131
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T+ IL AK KGA G + D V +A + + +H +GA+ V++ G + GI++ER
Sbjct: 2 TVRAILAAKPKGA-GELVSIAPDALVVEAAQLLARHRIGAVPVIEAG---ILVGILSERD 57
Query: 115 IFKAC 119
I +A
Sbjct: 58 IVRAL 62
>gi|449019275|dbj|BAM82677.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 312
Score = 38.5 bits (88), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPG------EQKSVAGIITERGIFK 117
+ + TV++AV+ M HNVGA+ VV+P + + + GI TER +
Sbjct: 131 SPESTVFEAVQKMVAHNVGAVAVVEPDANDAARQAQRLVGIFTERDYLR 179
>gi|388469324|ref|ZP_10143533.1| CBS domain protein [Pseudomonas synxantha BG33R]
gi|388006021|gb|EIK67287.1| CBS domain protein [Pseudomonas synxantha BG33R]
Length = 146
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 8/61 (13%)
Query: 55 TISDILKAKG-KGADGSWL-WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
T++ +LKAK K D + W D TV++A+ M++ NVGAL VVK G V GII+E
Sbjct: 3 TVAQLLKAKDQKNQDVHTIQW---DHTVFEALVRMSEKNVGALPVVKEG---VVVGIISE 56
Query: 113 R 113
R
Sbjct: 57 R 57
>gi|312136466|ref|YP_004003803.1| signal transduction protein with cbs domains [Methanothermus
fervidus DSM 2088]
gi|311224185|gb|ADP77041.1| putative signal transduction protein with CBS domains
[Methanothermus fervidus DSM 2088]
Length = 312
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 73 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ T D++ DAV+ M +H+VGAL VV + V GI++ER
Sbjct: 120 YITNKDSIKDAVEKMLKHDVGALPVV--DNENRVVGIVSER 158
>gi|118431018|ref|NP_147193.2| hypothetical protein APE_0383.1 [Aeropyrum pernix K1]
gi|116062345|dbj|BAA79338.2| conserved hypothetical protein [Aeropyrum pernix K1]
Length = 158
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 73 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
+ TDD+V A M +HN+G L V+ P +K V GI+T+ I K N
Sbjct: 88 YVYTDDSVERAASLMGEHNIGHLPVLDPETEKPV-GIVTKTDIVKLAPN 135
>gi|390568013|ref|ZP_10248325.1| signal-transduction protein [Burkholderia terrae BS001]
gi|389940016|gb|EIN01833.1| signal-transduction protein [Burkholderia terrae BS001]
Length = 144
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++ +LK+K D+VY+A+K M +GAL+V + G S+AGI+TER
Sbjct: 2 TSVAQVLKSKPTQ---EVYTIEASDSVYNAIKLMADKQIGALIVKENG---SIAGIVTER 55
>gi|430809537|ref|ZP_19436652.1| hypothetical protein D769_24763 [Cupriavidus sp. HMR-1]
gi|429498051|gb|EKZ96567.1| hypothetical protein D769_24763 [Cupriavidus sp. HMR-1]
Length = 151
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 7/62 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDIL+ KG + T D + AV++M +H++G+LVV++ G+ + G++T R I
Sbjct: 3 VSDILQLKG----NTLFTVTPDTPLMQAVQAMAEHDIGSLVVMEYGD---LVGMLTFREI 55
Query: 116 FK 117
+
Sbjct: 56 IE 57
>gi|312113812|ref|YP_004011408.1| signal transduction protein with CBS domains [Rhodomicrobium
vannielii ATCC 17100]
gi|311218941|gb|ADP70309.1| putative signal transduction protein with CBS domains
[Rhodomicrobium vannielii ATCC 17100]
Length = 143
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
+++ ILK KG+ L D TV++ V+ + + +GA+VVV EQ V GI++ER
Sbjct: 2 SVAGILKGKGRKV----LSVLPDRTVFEVVRLLHANRIGAVVVVD--EQHHVLGIVSERD 55
Query: 115 IFK 117
I +
Sbjct: 56 IVR 58
>gi|26986946|ref|NP_742371.1| hypothetical protein PP_0202 [Pseudomonas putida KT2440]
gi|395446551|ref|YP_006386804.1| CBS domain-containing protein [Pseudomonas putida ND6]
gi|24981558|gb|AAN65835.1|AE016212_1 CBS domain protein [Pseudomonas putida KT2440]
gi|388560548|gb|AFK69689.1| CBS domain-containing protein [Pseudomonas putida ND6]
Length = 145
Score = 38.5 bits (88), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ ILK K + + DD+V DA+K + + N+GAL VV+ G+ V GI++ER
Sbjct: 3 TVEQILKTKSQHQ--TVYTIGPDDSVLDALKLLAEKNIGALPVVEGGQ---VVGIVSER 56
>gi|407984288|ref|ZP_11164911.1| hypothetical protein C731_2879 [Mycobacterium hassiacum DSM 44199]
gi|407374129|gb|EKF23122.1| hypothetical protein C731_2879 [Mycobacterium hassiacum DSM 44199]
Length = 142
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + T + +V + + HN+GA+VVV P V GI++ER +
Sbjct: 3 IADVLRNKGS----AVATITPETSVAGLLTELAVHNIGAMVVVSP---DGVVGIVSERDV 55
Query: 116 FKACH 120
+A
Sbjct: 56 VRALQ 60
>gi|392417205|ref|YP_006453810.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium chubuense NBB4]
gi|390616981|gb|AFM18131.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium chubuense NBB4]
Length = 151
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L+ KG + T + +V + ++ HN+GA+VVV P + GI++ER +
Sbjct: 12 ISDVLRNKG----ATVATITPETSVAGLLTELSVHNIGAMVVVSP---DGLQGIVSERDV 64
Query: 116 FKACHN 121
+ H
Sbjct: 65 VRKLHE 70
>gi|84498468|ref|ZP_00997238.1| hypothetical protein JNB_16459 [Janibacter sp. HTCC2649]
gi|84381211|gb|EAP97095.1| hypothetical protein JNB_16459 [Janibacter sp. HTCC2649]
Length = 142
Score = 38.5 bits (88), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD++K KG + + +D +V D + + +H +GA+VV G+ SV GI++ER I
Sbjct: 3 ISDVVKRKGD----TVITVRSDASVTDLLDLLAEHRIGAVVVSDDGQ--SVDGIVSERDI 56
Query: 116 FK 117
+
Sbjct: 57 VR 58
>gi|289192998|ref|YP_003458939.1| signal transduction protein with CBS domains [Methanocaldococcus
sp. FS406-22]
gi|288939448|gb|ADC70203.1| putative signal transduction protein with CBS domains
[Methanocaldococcus sp. FS406-22]
Length = 194
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+ T D TVY+ MT++N+GA+V+V E GI+TER I K
Sbjct: 18 ITATKDMTVYEIANIMTENNIGAVVIV---ENNKPIGIVTERDIVK 60
>gi|12082815|gb|AAG48621.1|AF319543_1 cystathionine beta-synthase [Streptomyces venezuelae ATCC 10712]
Length = 463
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 46 MEEHGF----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG 101
M HGF S T++D+L+ K G S + D+TV A++ + ++ V + +VKPG
Sbjct: 311 MAGHGFLEDTSSATVADVLRHKEGGTMPSLVHMHPDETVGQAIEVLREYGVSQMPIVKPG 370
Query: 102 E------QKSVAGIITERGIFKA 118
V G + ER + A
Sbjct: 371 AGHPDVMAAEVVGSVVERDVLDA 393
>gi|104779464|ref|YP_605962.1| hypothetical protein PSEEN0171 [Pseudomonas entomophila L48]
gi|95108451|emb|CAK13145.1| conserved hypothetical protein; CBS domain protein [Pseudomonas
entomophila L48]
Length = 145
Score = 38.5 bits (88), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 63 KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
K K + DD+V DA+K + + N+GAL VV E V GI++ER
Sbjct: 9 KNKSQPQAVYTIAPDDSVLDALKMLAEKNIGALPVV---ENDQVVGIVSER 56
>gi|148545482|ref|YP_001265584.1| hypothetical protein Pput_0225 [Pseudomonas putida F1]
gi|397697387|ref|YP_006535270.1| CBS domain-containing protein [Pseudomonas putida DOT-T1E]
gi|421525151|ref|ZP_15971772.1| hypothetical protein PPUTLS46_25013 [Pseudomonas putida LS46]
gi|148509540|gb|ABQ76400.1| CBS domain containing protein [Pseudomonas putida F1]
gi|397334117|gb|AFO50476.1| CBS domain-containing protein [Pseudomonas putida DOT-T1E]
gi|402751614|gb|EJX12127.1| hypothetical protein PPUTLS46_25013 [Pseudomonas putida LS46]
Length = 145
Score = 38.1 bits (87), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ ILK K + + DD+V DA+K + + N+GAL VV+ G+ V GI++ER
Sbjct: 3 TVEQILKTKSQHQ--TVYTIGPDDSVLDALKLLAEKNIGALPVVEGGQ---VVGIVSER 56
>gi|83815791|ref|YP_446387.1| hypothetical protein SRU_2283 [Salinibacter ruber DSM 13855]
gi|294508324|ref|YP_003572382.1| hypothetical protein SRM_02509 [Salinibacter ruber M8]
gi|83757185|gb|ABC45298.1| CBS domain pair, putative [Salinibacter ruber DSM 13855]
gi|294344652|emb|CBH25430.1| putative CBS domain protein [Salinibacter ruber M8]
Length = 160
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 49 HGFESTTISDILKAKGKGAD-GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
G T + DI+++K AD G+ L + TV++ + M +VG++VV+ E ++A
Sbjct: 5 DGLLDTRVKDIIQSKSALADDGNVLTTSPTATVFECIGRMVDRDVGSIVVM---EGDAIA 61
Query: 108 GIITERGIFKA 118
G+ TER ++
Sbjct: 62 GLFTERNYMQS 72
>gi|398848487|ref|ZP_10605300.1| CBS domain-containing protein [Pseudomonas sp. GM84]
gi|398248217|gb|EJN33640.1| CBS domain-containing protein [Pseudomonas sp. GM84]
Length = 145
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ +ILK K + + DD+V DA+K + + NVGAL VV E V GI++ER
Sbjct: 3 NVEEILKTKSQHQ--TVYTIGPDDSVLDALKLLAEKNVGALPVV---ENNQVVGIVSER 56
>gi|126460086|ref|YP_001056364.1| signal-transduction protein [Pyrobaculum calidifontis JCM 11548]
gi|126249807|gb|ABO08898.1| putative signal-transduction protein with CBS domains [Pyrobaculum
calidifontis JCM 11548]
Length = 126
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
G+ A + T D T+ +AV+ +++H+VG LVVV + G+I+ER + +A
Sbjct: 4 GEIASRPPITITPDKTLEEAVELLSKHDVGILVVVDRENPRKPIGVISERDVVRA 58
>gi|397729251|ref|ZP_10496038.1| CBS domain pair family protein [Rhodococcus sp. JVH1]
gi|396934858|gb|EJJ01981.1| CBS domain pair family protein [Rhodococcus sp. JVH1]
Length = 142
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + + + V + + +HNVGALVV E +V GI+TER +
Sbjct: 3 IADVLRNKGP----AVVTVDPEMPVSTLIGELARHNVGALVVT---ENDAVVGIVTERDV 55
Query: 116 FKACH 120
+ H
Sbjct: 56 VRRIH 60
>gi|336121852|ref|YP_004576627.1| signal transduction protein with CBS domains [Methanothermococcus
okinawensis IH1]
gi|334856373|gb|AEH06849.1| putative signal transduction protein with CBS domains
[Methanothermococcus okinawensis IH1]
Length = 278
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
L D ++YDAV +MT +++GAL VV+ G+ V GIITE+
Sbjct: 232 LTVNKDASLYDAVDTMTTNDIGALPVVEDGK---VIGIITEK 270
>gi|407645157|ref|YP_006808916.1| hypothetical protein O3I_019915 [Nocardia brasiliensis ATCC 700358]
gi|407308041|gb|AFU01942.1| hypothetical protein O3I_019915 [Nocardia brasiliensis ATCC 700358]
Length = 144
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I++IL+ KG D TV + ++ +HN+GA+VV GE + GI++ER +
Sbjct: 3 IAEILRRKG----CDVATVAPDTTVRSLLATLAEHNIGAVVVTPDGE--GIVGIVSERDV 56
Query: 116 FKACH 120
+ H
Sbjct: 57 VRTLH 61
>gi|170291096|ref|YP_001737912.1| signal transduction protein [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170175176|gb|ACB08229.1| putative signal transduction protein with CBS domains [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 161
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%), Gaps = 3/40 (7%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
D TVY+A K M ++N+G++V+++ GE + GI+TER +
Sbjct: 32 DGTVYEAAKLMKENNIGSVVIMEEGELR---GIVTERDLI 68
>gi|111017173|ref|YP_700145.1| IMP dehydrogenase [Rhodococcus jostii RHA1]
gi|384099896|ref|ZP_10000967.1| IMP dehydrogenase [Rhodococcus imtechensis RKJ300]
gi|419965476|ref|ZP_14481420.1| IMP dehydrogenase [Rhodococcus opacus M213]
gi|424856737|ref|ZP_18280945.1| IMP dehydrogenase [Rhodococcus opacus PD630]
gi|432350979|ref|ZP_19594303.1| IMP dehydrogenase [Rhodococcus wratislaviensis IFP 2016]
gi|110816703|gb|ABG91987.1| probable IMP dehydrogenase [Rhodococcus jostii RHA1]
gi|356662872|gb|EHI43051.1| IMP dehydrogenase [Rhodococcus opacus PD630]
gi|383842566|gb|EID81829.1| IMP dehydrogenase [Rhodococcus imtechensis RKJ300]
gi|414569104|gb|EKT79853.1| IMP dehydrogenase [Rhodococcus opacus M213]
gi|430769666|gb|ELB85697.1| IMP dehydrogenase [Rhodococcus wratislaviensis IFP 2016]
Length = 142
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + + + V + + +HNVGALVV E +V GI+TER +
Sbjct: 3 IADVLRNKGP----AVVTVDPEMPVSTLIGELARHNVGALVVT---ENDAVVGIVTERDV 55
Query: 116 FKACH 120
+ H
Sbjct: 56 VRRIH 60
>gi|392961555|ref|ZP_10327012.1| CBS domain containing protein [Pelosinus fermentans DSM 17108]
gi|421055470|ref|ZP_15518433.1| CBS domain containing protein [Pelosinus fermentans B4]
gi|421061295|ref|ZP_15523646.1| CBS domain containing protein [Pelosinus fermentans B3]
gi|421064196|ref|ZP_15526095.1| CBS domain containing protein [Pelosinus fermentans A12]
gi|421072352|ref|ZP_15533463.1| putative signal transduction protein with CBS domain-containing
protein [Pelosinus fermentans A11]
gi|392439853|gb|EIW17554.1| CBS domain containing protein [Pelosinus fermentans B4]
gi|392445989|gb|EIW23291.1| putative signal transduction protein with CBS domain-containing
protein [Pelosinus fermentans A11]
gi|392450681|gb|EIW27711.1| CBS domain containing protein [Pelosinus fermentans B3]
gi|392453673|gb|EIW30541.1| CBS domain containing protein [Pelosinus fermentans DSM 17108]
gi|392461516|gb|EIW37701.1| CBS domain containing protein [Pelosinus fermentans A12]
Length = 215
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
TV +A M H +G LVVV EQ +VAGIITE IFK+
Sbjct: 93 TVEEAAILMYNHRIGGLVVVD--EQGTVAGIITETDIFKS 130
>gi|256810527|ref|YP_003127896.1| putative signal transduction protein with CBS domains
[Methanocaldococcus fervens AG86]
gi|256793727|gb|ACV24396.1| putative signal transduction protein with CBS domains
[Methanocaldococcus fervens AG86]
Length = 297
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+ L D+ +YDA+K M ++NVG LV+V + + GIIT I K
Sbjct: 239 NVLTIHKDEKIYDALKIMNKNNVGRLVIVD--DNNKIVGIITRTDILK 284
>gi|126459490|ref|YP_001055768.1| signal-transduction protein [Pyrobaculum calidifontis JCM 11548]
gi|126249211|gb|ABO08302.1| putative signal-transduction protein with CBS domains [Pyrobaculum
calidifontis JCM 11548]
Length = 141
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
G+ A + T ++ D K M ++NVG +V+V P + + V G+++ER + +A
Sbjct: 3 GQFAKKEVVKATPSTSIRDVAKLMAENNVGLVVLVDPRDPQRVVGVVSERDVVRAV 58
>gi|167031246|ref|YP_001666477.1| hypothetical protein PputGB1_0228 [Pseudomonas putida GB-1]
gi|166857734|gb|ABY96141.1| CBS domain containing protein [Pseudomonas putida GB-1]
Length = 145
Score = 38.1 bits (87), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ ILK K + + DD+V DA+K + + NVGAL VV E V GI++ER
Sbjct: 3 TVEQILKTKSQHQ--TVYTIGPDDSVLDALKMLAEKNVGALPVV---EGNQVVGIVSER 56
>gi|421075151|ref|ZP_15536166.1| CBS domain containing protein [Pelosinus fermentans JBW45]
gi|392526593|gb|EIW49704.1| CBS domain containing protein [Pelosinus fermentans JBW45]
Length = 215
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
+ T TV +A M H +G LVVV EQ +VAGIITE IFK+
Sbjct: 86 ISINTGATVEEAAILMYNHRIGGLVVVD--EQGAVAGIITETDIFKS 130
>gi|83309972|ref|YP_420236.1| CBS domain-containing protein [Magnetospirillum magneticum AMB-1]
gi|82944813|dbj|BAE49677.1| CBS domain [Magnetospirillum magneticum AMB-1]
Length = 146
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 5/59 (8%)
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
ILK+K +G G + T + ++ DA + + QH +GA V+V G++ VAGI++ER I +
Sbjct: 6 ILKSKARG--GGIISVTPEASIGDAARLLAQHKIGA-VLVMNGDR--VAGILSERDIVR 59
>gi|385682177|ref|ZP_10056105.1| hypothetical protein AATC3_39898 [Amycolatopsis sp. ATCC 39116]
Length = 142
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 13/65 (20%)
Query: 56 ISDILKAKGKGADGSWLWCTT---DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
I+D+L++KG W T + ++ D + + +HNVGA+VV + +AGI++E
Sbjct: 3 IADLLRSKGN-------WVATVRPESSITDLLAGLAEHNVGAMVVAG---EDGIAGIVSE 52
Query: 113 RGIFK 117
R + +
Sbjct: 53 RDVVR 57
>gi|387792257|ref|YP_006257322.1| putative signal transduction protein [Solitalea canadensis DSM
3403]
gi|379655090|gb|AFD08146.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Solitalea canadensis DSM 3403]
Length = 147
Score = 38.1 bits (87), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ DIL KG + ++TVYDA++ + + N+GALVV G GI TER
Sbjct: 4 VKDILAKKG----NTVYTIDAEETVYDALEDLIEKNIGALVVTDHGRH---IGIFTER 54
>gi|289192335|ref|YP_003458276.1| signal transduction protein with CBS domains [Methanocaldococcus
sp. FS406-22]
gi|288938785|gb|ADC69540.1| putative signal transduction protein with CBS domains
[Methanocaldococcus sp. FS406-22]
Length = 298
Score = 37.7 bits (86), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
L D+ +YDA+K M ++NVG LV+V + + GIIT I K
Sbjct: 241 LTIHKDEKIYDALKIMNKNNVGRLVIVD--DNNKIVGIITRTDILK 284
>gi|367471309|ref|ZP_09470955.1| Cystathionine beta-synthase [Patulibacter sp. I11]
gi|365813617|gb|EHN08869.1| Cystathionine beta-synthase [Patulibacter sp. I11]
Length = 487
Score = 37.7 bits (86), Expect = 0.77, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 46 MEEHGF----ESTTISDILKAK-GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M EHGF T+ D+L+ K +G + V A+ + +H V L VV P
Sbjct: 342 MREHGFLERPPERTVGDVLRTKEAEGGVPQLVAVRPSHKVRQAIALLHEHGVSQLPVVSP 401
Query: 101 GEQKSVAGIITERGIFK 117
++ ++ G I ERG+ +
Sbjct: 402 HDEHALVGSIGERGLLR 418
>gi|388456933|ref|ZP_10139228.1| hypothetical protein FdumT_10182 [Fluoribacter dumoffii Tex-KL]
Length = 146
Score = 37.7 bits (86), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
DD V ++ MT++++GALVV+ Q + GI++ER I ++C
Sbjct: 22 DDPVKKSIDMMTEYDIGALVVMDNENQ--LVGIVSERDIVRSC 62
>gi|83645540|ref|YP_433975.1| hypothetical protein HCH_02766 [Hahella chejuensis KCTC 2396]
gi|83633583|gb|ABC29550.1| FOG: CBS domain [Hahella chejuensis KCTC 2396]
Length = 140
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 62 AKGKGADGSW--------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
A+GKG D L+C +D V D +K+M + V LVV+K + K G++T
Sbjct: 58 AEGKGMDEKVGDLVQEKVLYCYQEDDVKDVLKNMKEQKVQRLVVLKGKDDKDFVGMVTVG 117
Query: 114 GIFKACHN 121
I C +
Sbjct: 118 DIADKCAD 125
>gi|449068365|ref|YP_007435446.1| hypothetical protein SacRon12I_00210 [Sulfolobus acidocaldarius
Ron12/I]
gi|449036873|gb|AGE72298.1| hypothetical protein SacRon12I_00210 [Sulfolobus acidocaldarius
Ron12/I]
Length = 150
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
DD+V A + M +HN+G+L+V+ + V+GIITER + +A
Sbjct: 5 DDSVRFAAEEMKKHNIGSLIVID--NRGKVSGIITERDLVRA 44
>gi|423013390|ref|ZP_17004111.1| CBS domain pair family protein 3 [Achromobacter xylosoxidans AXX-A]
gi|338783618|gb|EGP47981.1| CBS domain pair family protein 3 [Achromobacter xylosoxidans AXX-A]
Length = 130
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ T D +VYDA+K+M + ++GA+VV E V G++TER
Sbjct: 1 MTVTPDSSVYDAIKTMAERSIGAVVV---AEGDEVLGMLTER 39
>gi|114704331|ref|ZP_01437239.1| putative inosine-5`-monophosphate dehydrogenase protein
[Fulvimarina pelagi HTCC2506]
gi|114539116|gb|EAU42236.1| putative inosine-5`-monophosphate dehydrogenase protein
[Fulvimarina pelagi HTCC2506]
Length = 176
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
+ D +V +AV M++ ++G++VVV P E+ V G++TER + K N
Sbjct: 19 SADTSVAEAVAEMSKRDIGSVVVVGPDEK--VEGLVTERDVMKRLVN 63
>gi|451339062|ref|ZP_21909587.1| Inosine-5'-monophosphate dehydrogenase [Amycolatopsis azurea DSM
43854]
gi|449418235|gb|EMD23833.1| Inosine-5'-monophosphate dehydrogenase [Amycolatopsis azurea DSM
43854]
Length = 143
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L+ KG + + + V + ++ + +HNVGALVVV ++ + GI++ER +
Sbjct: 3 ISDLLRNKG----AAVATVSPETNVTELLERLAEHNVGALVVVD--DEGGIVGIVSERDV 56
Query: 116 FK 117
+
Sbjct: 57 VR 58
>gi|304312239|ref|YP_003811837.1| hypothetical protein HDN1F_26110 [gamma proteobacterium HdN1]
gi|301797972|emb|CBL46194.1| Conserved hypothetical protein [gamma proteobacterium HdN1]
Length = 147
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 8/59 (13%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ D+LK K W DT V DA++ M VGALVV+ E+K V+GIITER
Sbjct: 4 VRDLLKQKT----NQQTWTVQPDTKVLDALQLMADKGVGALVVM---EKKRVSGIITER 55
>gi|119715931|ref|YP_922896.1| hypothetical protein Noca_1696 [Nocardioides sp. JS614]
gi|119536592|gb|ABL81209.1| CBS domain containing protein [Nocardioides sp. JS614]
Length = 143
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I D+LKAK + D V + + + +HNVGAL+V G SV GI++ER +
Sbjct: 3 IGDVLKAK---PSHEVITIGPDAGVRELIAKLAEHNVGALIVSSDG--TSVDGIVSERDV 57
Query: 116 FKACHN 121
+ H+
Sbjct: 58 VRHLHS 63
>gi|99078228|ref|YP_611486.1| signal-transduction protein [Ruegeria sp. TM1040]
gi|99035366|gb|ABF62224.1| putative signal-transduction protein with CBS domains [Ruegeria sp.
TM1040]
Length = 174
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T+ D+L +K +G W +DTV AV+ + +GAL+V Q + GI++ER
Sbjct: 34 TVGDVLASK----NGELYWINPEDTVAKAVEVLRDRGIGALLV--KNAQGDLVGILSERD 87
Query: 115 IFK 117
I +
Sbjct: 88 IVR 90
>gi|83716568|ref|YP_439711.1| hypothetical protein BTH_II1515 [Burkholderia thailandensis E264]
gi|167578151|ref|ZP_02371025.1| CBS domain protein [Burkholderia thailandensis TXDOH]
gi|167616282|ref|ZP_02384917.1| CBS domain protein [Burkholderia thailandensis Bt4]
gi|257142850|ref|ZP_05591112.1| CBS domain-containing protein [Burkholderia thailandensis E264]
gi|83650393|gb|ABC34457.1| CBS domain protein [Burkholderia thailandensis E264]
Length = 153
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
S T++ ILK+K + D+VY+A+K M + ++GAL+V+ + ++AGI+TE
Sbjct: 2 SLTVAQILKSKPDSG-RTIHMVEKSDSVYNAIKLMAEKSIGALLVM---DGANIAGIVTE 57
Query: 113 R 113
R
Sbjct: 58 R 58
>gi|281211188|gb|EFA85354.1| hypothetical protein PPL_02357 [Polysphondylium pallidum PN500]
Length = 239
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
F T I +IL+ K K L +D + +A++ MTQ+ VGA++V+ Q + GI
Sbjct: 80 FGDTKIKEILEKKEKR---ELLTINSDQLIIEALRKMTQNKVGAIMVLDSNGQ--LEGIF 134
Query: 111 TER 113
TER
Sbjct: 135 TER 137
>gi|20093964|ref|NP_613811.1| CBS domain-containing protein [Methanopyrus kandleri AV19]
gi|19886923|gb|AAM01741.1| CBS domain-containing protein [Methanopyrus kandleri AV19]
Length = 278
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
DTV AV++M + VGAL +VK K + GIITER I ++
Sbjct: 100 DTVRKAVRTMFEFEVGALPIVK---DKKLVGIITERDIMADLYD 140
>gi|395770295|ref|ZP_10450810.1| cystathionine beta-synthase [Streptomyces acidiscabies 84-104]
Length = 462
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S +SD+L K GA S + ++TV +A++ + ++ V + VVKP
Sbjct: 311 MADYGFLEDEGPSARVSDVLDDKVHGAIPSLVHMHPEETVGEAIEVLREYGVSQMPVVKP 370
Query: 101 GE------QKSVAGIITERGIFKACHN 121
G V G + ER + A N
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDALFN 397
>gi|297564581|ref|YP_003683553.1| putative signal transduction protein [Meiothermus silvanus DSM
9946]
gi|296849030|gb|ADH62045.1| putative signal transduction protein with CBS domains [Meiothermus
silvanus DSM 9946]
Length = 143
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
+ T+ +L+ KG TVY+A++ M QH+VGAL+V++ G+ + GI +E
Sbjct: 2 TATVRQLLQVKGS----RVFDIHPQATVYEALERMAQHDVGALLVLEEGQ---LVGIFSE 54
Query: 113 R 113
R
Sbjct: 55 R 55
>gi|70605897|ref|YP_254767.1| hypothetical protein Saci_0044 [Sulfolobus acidocaldarius DSM 639]
gi|449066089|ref|YP_007433171.1| hypothetical protein SacN8_00210 [Sulfolobus acidocaldarius N8]
gi|68566545|gb|AAY79474.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
gi|449034597|gb|AGE70023.1| hypothetical protein SacN8_00210 [Sulfolobus acidocaldarius N8]
Length = 164
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
DD+V A + M +HN+G+L+V+ + V+GIITER + +A
Sbjct: 19 DDSVRFAAEEMKKHNIGSLIVID--NRGKVSGIITERDLVRA 58
>gi|408678549|ref|YP_006878376.1| Cystathionine beta-synthase [Streptomyces venezuelae ATCC 10712]
gi|328882878|emb|CCA56117.1| Cystathionine beta-synthase [Streptomyces venezuelae ATCC 10712]
Length = 463
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 46 MEEHGF----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG 101
M HGF S T++D+L+ K G S + D+TV A++ + ++ V + +VKPG
Sbjct: 311 MAGHGFLEDTSSATVADVLRHKEGGTMPSLVHMHPDETVGQAIEVLREYGVSQMPIVKPG 370
Query: 102 E------QKSVAGIITERGIFKA 118
V G + ER + A
Sbjct: 371 AGHPDVMAAEVVGSVVERELLDA 393
>gi|284042376|ref|YP_003392716.1| cystathionine beta-synthase [Conexibacter woesei DSM 14684]
gi|283946597|gb|ADB49341.1| cystathionine beta-synthase [Conexibacter woesei DSM 14684]
Length = 469
Score = 37.7 bits (86), Expect = 0.89, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 46 MEEHGF----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG 101
M EHGF + D+L+AK + + T V DAV + +H V L VV
Sbjct: 327 MTEHGFLERSSGQRVGDVLRAKHDSSLPPLVTVHTHQRVQDAVSLLHEHGVSQLPVVSAH 386
Query: 102 EQKSVAGIITERGIF 116
+ ++ G + ERG+
Sbjct: 387 DPSAIVGSVGERGLL 401
>gi|145591209|ref|YP_001153211.1| signal transduction protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282977|gb|ABP50559.1| putative signal transduction protein with CBS domains [Pyrobaculum
arsenaticum DSM 13514]
Length = 139
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
G+ A + T D T+ +A M QH VG LV+V K G+I+ER I +
Sbjct: 4 GEIAKKPAVAITPDKTIEEAAALMAQHRVGLLVIVDKENPKKPIGVISERDIIR 57
>gi|87198179|ref|YP_495436.1| signal-transduction protein [Novosphingobium aromaticivorans DSM
12444]
gi|87133860|gb|ABD24602.1| putative signal-transduction protein with CBS domains
[Novosphingobium aromaticivorans DSM 12444]
Length = 142
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 13/70 (18%)
Query: 55 TISDILKAKGKGADGSWLW-CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS--VAGIIT 111
TI+ ++ +G+ +W C DD+V DAV + ++ +GAL P E + VAGI +
Sbjct: 2 TIAQVIAGRGE------VWSCHADDSVADAVDMLARYRIGAL----PVEDGTNGVAGIFS 51
Query: 112 ERGIFKACHN 121
ER + + H
Sbjct: 52 ERDMIRCLHK 61
>gi|114331513|ref|YP_747735.1| signal-transduction protein [Nitrosomonas eutropha C91]
gi|114308527|gb|ABI59770.1| putative signal-transduction protein with CBS domains [Nitrosomonas
eutropha C91]
Length = 146
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 3/36 (8%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D+V DA++ MT +N+GAL+VVK K + GI+TER
Sbjct: 22 DSVSDAMQKMTTNNIGALLVVK---DKKLIGILTER 54
>gi|170719459|ref|YP_001747147.1| hypothetical protein PputW619_0272 [Pseudomonas putida W619]
gi|169757462|gb|ACA70778.1| CBS domain containing protein [Pseudomonas putida W619]
Length = 145
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ ILK K + + DD+V DA+K + + NVGAL VV E V GI++ER
Sbjct: 4 VEQILKTKSQHQ--TVYTIGPDDSVLDALKMLAEKNVGALPVV---ENNQVVGIVSER 56
>gi|145223257|ref|YP_001133935.1| signal-transduction protein [Mycobacterium gilvum PYR-GCK]
gi|315443717|ref|YP_004076596.1| signal-transduction protein containing cAMP-binding and CBS domains
[Mycobacterium gilvum Spyr1]
gi|145215743|gb|ABP45147.1| putative signal-transduction protein with CBS domains
[Mycobacterium gilvum PYR-GCK]
gi|315262020|gb|ADT98761.1| predicted signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium gilvum Spyr1]
Length = 142
Score = 37.7 bits (86), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L++KG + T + +V + ++ N+GA+VVV P + GI++ER I
Sbjct: 3 ISDVLRSKG----AAVATITPETSVAGLLTELSVRNIGAMVVVSP---DGLQGIVSERDI 55
Query: 116 FKACHN 121
+ H+
Sbjct: 56 VRKLHD 61
>gi|330799665|ref|XP_003287863.1| hypothetical protein DICPUDRAFT_91991 [Dictyostelium purpureum]
gi|325082133|gb|EGC35626.1| hypothetical protein DICPUDRAFT_91991 [Dictyostelium purpureum]
Length = 241
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
I++ K K G + D TVYDA+K M + VGA +VV + + GI +ER
Sbjct: 100 IIENKIKNNLGRIVRVDEDSTVYDAIKVMNEKRVGATIVVDKNNR--MTGIFSER 152
>gi|338213210|ref|YP_004657265.1| signal transduction protein with CBS domains [Runella slithyformis
DSM 19594]
gi|336307031|gb|AEI50133.1| putative signal transduction protein with CBS domains [Runella
slithyformis DSM 19594]
Length = 146
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
I ++L+ K + A T + TV DA+K M N+GA++V++ G+ +AGI +ER
Sbjct: 3 IKNVLRDKTRNA---IFSVTPETTVLDALKQMADKNIGAVLVLEEGK---LAGIFSER 54
>gi|114770297|ref|ZP_01447835.1| inosine-5'-monophosphate dehydrogenase (guaB) [Rhodobacterales
bacterium HTCC2255]
gi|114549134|gb|EAU52017.1| inosine-5'-monophosphate dehydrogenase (guaB) [alpha
proteobacterium HTCC2255]
Length = 180
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
+ D V+DAV +M++ N G++VVV +K V G++TER I
Sbjct: 28 SPDTNVFDAVNAMSKKNYGSVVVV--DTEKKVIGVVTERDIM 67
>gi|15921004|ref|NP_376673.1| inosine-5'-monophosphate dehydrogenase [Sulfolobus tokodaii str. 7]
gi|15621788|dbj|BAB65782.1| hypothetical protein STK_07700 [Sulfolobus tokodaii str. 7]
Length = 254
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 58 DILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
D+ K K L T DT V DA+K M +N+G L VV E + + G+ TER +
Sbjct: 64 DLFSLKAKDLMSEDLISVTPDTPVIDAIKIMINNNIGGLPVV---ENQVIRGLFTEREVI 120
Query: 117 KACHN 121
N
Sbjct: 121 NVIAN 125
>gi|452974607|gb|EME74427.1| hypothetical protein BSONL12_11576 [Bacillus sonorensis L12]
Length = 148
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
L+CT D VY+A M + NVGA+ VV+ + + GI+T+R +
Sbjct: 11 DLLYCTVLDNVYEAAVKMKEGNVGAIPVVRD-DSFELVGIVTDRDL 55
>gi|298674000|ref|YP_003725750.1| putative signal transduction protein [Methanohalobium evestigatum
Z-7303]
gi|298286988|gb|ADI72954.1| putative signal transduction protein with CBS domains
[Methanohalobium evestigatum Z-7303]
Length = 353
Score = 37.4 bits (85), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
+W T+D + +A + M ++NVG+L ++ G+ GIITER KA
Sbjct: 307 VWTTSDTDLGEAARLMQENNVGSLPIIDNGQ---FIGIITERDFLKAI 351
>gi|311107598|ref|YP_003980451.1| hypothetical protein AXYL_04417 [Achromobacter xylosoxidans A8]
gi|310762287|gb|ADP17736.1| CBS domain pair family protein 3 [Achromobacter xylosoxidans A8]
Length = 146
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 40/59 (67%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++IL+ K A+ S + + D +V++AVK M + ++GA+VVV+ +V G++TER
Sbjct: 3 TVAEILREK---ANHSVVTVSPDASVFEAVKIMAERSIGAVVVVQG---DAVLGMLTER 55
>gi|119871771|ref|YP_929778.1| signal-transduction protein [Pyrobaculum islandicum DSM 4184]
gi|119673179|gb|ABL87435.1| putative signal-transduction protein with CBS domains [Pyrobaculum
islandicum DSM 4184]
Length = 142
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
G A + ++ DA + M + NVG +V+V P + + G+++ER I KA
Sbjct: 4 GDLAKRPPVILINKASIRDAARVMAEKNVGLVVIVDPLDYSHIIGVVSERDIVKAV 59
>gi|420251570|ref|ZP_14754734.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Burkholderia sp. BT03]
gi|398057451|gb|EJL49412.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Burkholderia sp. BT03]
Length = 160
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 55 TISDILKAKGKGADGSWLWCT-TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+++ L++K D +W T +VYDA+ M VGAL+V G +AGI+TER
Sbjct: 3 SVAQFLRSK----DSQTVWSTHASASVYDAIAIMAHRQVGALIVANEGR---LAGIVTER 55
>gi|375104206|ref|ZP_09750467.1| CBS domain-containing protein [Burkholderiales bacterium JOSHI_001]
gi|374664937|gb|EHR69722.1| CBS domain-containing protein [Burkholderiales bacterium JOSHI_001]
Length = 154
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDIL KG G+ + D + +AVK+M ++G+LVV+ G+ + G++T R +
Sbjct: 3 VSDILLVKG----GTLFTVSPDSPLAEAVKTMADRDIGSLVVMSHGD---LVGMLTFREV 55
Query: 116 FKAC 119
KA
Sbjct: 56 IKAV 59
>gi|420254612|ref|ZP_14757606.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Burkholderia sp. BT03]
gi|398048356|gb|EJL40830.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Burkholderia sp. BT03]
Length = 144
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++ +LK+K D+VY+A+K M +GAL+V + G ++AGI+TER
Sbjct: 2 TSVAQVLKSKPTQ---EVYTIEASDSVYNAIKLMADKQIGALIVKENG---AIAGIVTER 55
>gi|84685642|ref|ZP_01013539.1| CBS domain protein [Maritimibacter alkaliphilus HTCC2654]
gi|84666308|gb|EAQ12781.1| CBS domain protein [Rhodobacterales bacterium HTCC2654]
Length = 173
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Query: 39 ESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV 98
+SVSS H T+ D+L K DG + + T++DAV + + +GAL+ V
Sbjct: 21 QSVSSNTTVSHA----TVQDVLDKK----DGRIITIHPEQTLHDAVVLLRDNRIGALLCV 72
Query: 99 KPGEQKSVAGIITERGIFK 117
E+ +AGI++ER I +
Sbjct: 73 D--EEGKLAGILSERDIVR 89
>gi|440226719|ref|YP_007333810.1| CBS domain-containing protein [Rhizobium tropici CIAT 899]
gi|440038230|gb|AGB71264.1| CBS domain-containing protein [Rhizobium tropici CIAT 899]
Length = 144
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 6/66 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
S ++ IL+AKG+ + + TV +A K + ++ +GA+VVV PG + ++GI TE
Sbjct: 2 SVSVKAILEAKGR----DVVTTGGNTTVAEAAKILNENRIGAIVVVGPGGK--ISGIFTE 55
Query: 113 RGIFKA 118
R + A
Sbjct: 56 RDVVNA 61
>gi|352683277|ref|YP_004893801.1| hypothetical protein TTX_2111 [Thermoproteus tenax Kra 1]
gi|350276076|emb|CCC82723.1| conserved protein with 2 CBS domains [Thermoproteus tenax Kra 1]
Length = 142
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
T + ++ DA K M +HN+G LV+V + V G+++ER I A
Sbjct: 14 TTPNLSIRDAAKLMRKHNIGLLVLVDHSDPYKVVGVVSERDIVHAI 59
>gi|433648777|ref|YP_007293779.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium smegmatis JS623]
gi|433298554|gb|AGB24374.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Mycobacterium smegmatis JS623]
Length = 143
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + T + +V + +T HN+GA+VV+ Q + GI++ER +
Sbjct: 3 IADVLRNKG----AAVATITPETSVAGLLTELTVHNIGAMVVMS---QDGLVGIVSERDV 55
Query: 116 FKACHN 121
+ H
Sbjct: 56 VRKLHE 61
>gi|221209739|ref|ZP_03582720.1| CBS domain protein [Burkholderia multivorans CGD1]
gi|221170427|gb|EEE02893.1| CBS domain protein [Burkholderia multivorans CGD1]
Length = 149
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
++ ILKAK + TD VYDA+K M+ +GAL+V+ + +AGI+TER
Sbjct: 1 MAQILKAKPDSGRTIYTVKKTD-LVYDAIKLMSDKGIGALLVM---DGDDIAGIVTER 54
>gi|15669417|ref|NP_248227.1| hypothetical protein MJ_1232 [Methanocaldococcus jannaschii DSM
2661]
gi|2496164|sp|Q58629.1|Y1232_METJA RecName: Full=Uncharacterized protein MJ1232
gi|1591864|gb|AAB99237.1| conserved hypothetical protein [Methanocaldococcus jannaschii DSM
2661]
Length = 296
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
D+ +YDA+K M ++NVG LV+V + + GIIT I K
Sbjct: 246 DEKIYDALKIMNKNNVGRLVIVD--DNNKIVGIITRTDILK 284
>gi|408482496|ref|ZP_11188715.1| hypothetical protein PsR81_18138 [Pseudomonas sp. R81]
Length = 146
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ +LKAK + + D TV++A+ M++ NVGAL VV+ G V GII+ER
Sbjct: 3 TVAQVLKAKDQ-KNQEVHVIKHDHTVFEALVRMSEKNVGALPVVQDG---VVVGIISER 57
>gi|196234157|ref|ZP_03132990.1| Chloride channel core [Chthoniobacter flavus Ellin428]
gi|196221808|gb|EDY16345.1| Chloride channel core [Chthoniobacter flavus Ellin428]
Length = 580
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
D+T+YDA+ M +HN+G L VV + V G + GI A N
Sbjct: 512 DETLYDAIAKMLKHNLGRLPVVDRHDVNKVVGYLGRAGILAARQN 556
>gi|373951881|ref|ZP_09611841.1| regulatory protein TetR [Mucilaginibacter paludis DSM 18603]
gi|373888481|gb|EHQ24378.1| regulatory protein TetR [Mucilaginibacter paludis DSM 18603]
Length = 205
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 27 NPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAV 84
NP +V + + + HG T+ D+ KA GKG + + + D ++DAV
Sbjct: 5 NPSKEDLVQEQILQAAKRLFQIHGLYKVTMDDVAKAIGKGRSSIYYYYKSKDEIFDAV 62
>gi|386009867|ref|YP_005928144.1| hypothetical protein PPUBIRD1_0233 [Pseudomonas putida BIRD-1]
gi|313496573|gb|ADR57939.1| CBS domain-containing protein [Pseudomonas putida BIRD-1]
Length = 145
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
DD+V DA+K + + NVGAL VV+ G+ V GI++ER
Sbjct: 23 DDSVLDALKLLAEKNVGALPVVEGGQ---VVGIVSER 56
>gi|390572107|ref|ZP_10252332.1| hypothetical protein WQE_27120 [Burkholderia terrae BS001]
gi|389935895|gb|EIM97798.1| hypothetical protein WQE_27120 [Burkholderia terrae BS001]
Length = 160
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 55 TISDILKAKGKGADGSWLWCT-TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+++ L++K D +W T +VYDA+ M VGAL+V G +AGI+TER
Sbjct: 3 SVAQFLRSK----DSQTVWSTHASASVYDAIAIMAHRQVGALIVANEGR---LAGIVTER 55
>gi|377820853|ref|YP_004977224.1| signal-transduction protein [Burkholderia sp. YI23]
gi|357935688|gb|AET89247.1| signal-transduction protein [Burkholderia sp. YI23]
Length = 185
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ +LKAK +D + + +VY+AV M++ VGALVV G +V GI+TER
Sbjct: 20 TVKQVLKAK---SDAAVHTIDAEASVYEAVALMSRAEVGALVVTVGG---AVCGIVTER 72
>gi|379706287|ref|YP_005261492.1| hypothetical protein NOCYR_0023 [Nocardia cyriacigeorgica GUH-2]
gi|374843786|emb|CCF60848.1| conserved protein of unknown function; putative CBS domain
[Nocardia cyriacigeorgica GUH-2]
Length = 139
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT DI+K + W + D TV A + M + VG+LV+ E + + GIIT+R
Sbjct: 2 TTARDIMKPGAQ-------WISRDQTVAQAARVMAELGVGSLVIAD--ENERMCGIITDR 52
Query: 114 GIFKAC 119
I C
Sbjct: 53 DIVVKC 58
>gi|390452817|ref|ZP_10238345.1| inosine-5'-monophosphate dehydrogenase IMP dehydrogenase; IMPDH;
IMPD [Paenibacillus peoriae KCTC 3763]
Length = 214
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
+ T++DIL + + D T YDAV + Q N G L+V GE++ + GI+
Sbjct: 74 LKKLTVADIL--------SEPILISGDATAYDAVLMLFQQNTGTLMVT--GEEQELIGIV 123
Query: 111 TERGIFK 117
T + + K
Sbjct: 124 TRKDLLK 130
>gi|186472103|ref|YP_001859445.1| signal-transduction protein [Burkholderia phymatum STM815]
gi|184194435|gb|ACC72399.1| putative signal-transduction protein with CBS domains [Burkholderia
phymatum STM815]
Length = 144
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+++ +LK+K D+VY+A+K M +GAL+V + G ++AGI+TER
Sbjct: 2 TSVAQVLKSK---PTQEVYTIEATDSVYNAIKLMADKQIGALIVKENG---AIAGIVTER 55
>gi|379004303|ref|YP_005259975.1| hypothetical protein Pogu_1341 [Pyrobaculum oguniense TE7]
gi|375159756|gb|AFA39368.1| CBS domain protein [Pyrobaculum oguniense TE7]
Length = 139
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
G+ A + T D T+ +A M QH VG LV+V K G+++ER I ++
Sbjct: 4 GEIAKKPAVAITPDKTIEEAAALMAQHRVGLLVIVDRENPKKPIGVVSERDIIRS 58
>gi|383778866|ref|YP_005463432.1| hypothetical protein AMIS_36960 [Actinoplanes missouriensis 431]
gi|381372098|dbj|BAL88916.1| hypothetical protein AMIS_36960 [Actinoplanes missouriensis 431]
Length = 145
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISDIL+ KG + + V ++ + QH +GA+VV + G +V GI++ER I
Sbjct: 3 ISDILRVKGD----QVVTVPPETPVVRLLEVLAQHRIGAVVVSRDG--TTVEGIVSERDI 56
Query: 116 FKAC 119
+A
Sbjct: 57 VRAL 60
>gi|406911913|gb|EKD51615.1| signal transduction protein [uncultured bacterium]
Length = 148
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 54 TTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
TT++ +LK KG + +W D+V AVK M Q VGAL+V+K +V G+ +E
Sbjct: 3 TTVNQLLKRKG-----NQIWSVAPTDSVDKAVKLMAQRKVGALMVMK---DNAVVGVFSE 54
Query: 113 RGI 115
R +
Sbjct: 55 RDL 57
>gi|336118180|ref|YP_004572949.1| hypothetical protein MLP_25320 [Microlunatus phosphovorus NM-1]
gi|334685961|dbj|BAK35546.1| hypothetical protein MLP_25320 [Microlunatus phosphovorus NM-1]
Length = 142
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I +IL+ KG + + T D +V D V + +HN+GA+VV G ++ GI++ER I
Sbjct: 3 IREILQTKGS----AVITITPDASVRDLVVLLKEHNLGAVVVSTDG--AALDGIVSERDI 56
Query: 116 FKA 118
+A
Sbjct: 57 VRA 59
>gi|310641459|ref|YP_003946217.1| signal transduction protein with cbs domains [Paenibacillus
polymyxa SC2]
gi|309246409|gb|ADO55976.1| Putative signal transduction protein with CBS domains
[Paenibacillus polymyxa SC2]
Length = 225
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
+ T++DIL + + D T YDAV + Q N G L+V GE++ + GI+
Sbjct: 85 LKKLTVADIL--------SDPILISGDATAYDAVLMLFQQNTGTLMVT--GEEQELIGIV 134
Query: 111 TERGIFK 117
T + + K
Sbjct: 135 TRKDLLK 141
>gi|15922445|ref|NP_378114.1| hypothetical protein ST2119 [Sulfolobus tokodaii str. 7]
gi|15623234|dbj|BAB67223.1| hypothetical protein STK_21190 [Sulfolobus tokodaii str. 7]
Length = 164
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+D+V A + M +HN+GALVV+ ++ + GIITER I K
Sbjct: 19 NDSVKTAAEEMKKHNLGALVVIDDNDK--IVGIITERDIVK 57
>gi|152980858|ref|YP_001353867.1| hypothetical protein mma_2177 [Janthinobacterium sp. Marseille]
gi|151280935|gb|ABR89345.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
Length = 176
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+S+ILK KG T D + DAV +M + ++G+LVV++ G ++ G++T R +
Sbjct: 28 VSEILKVKGN----ILFTVTPDSPMLDAVNAMAEKDIGSLVVMEAG---NLIGMLTFREV 80
Query: 116 FKACH 120
H
Sbjct: 81 MATIH 85
>gi|49076464|gb|AAT49566.1| PA0250, partial [synthetic construct]
Length = 145
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ +L AK + D+ V DA++ M + N+GAL+VV GE V G+++ER
Sbjct: 3 TVAQLLNAK---QNQQVYTIGADEMVLDALRLMAEKNIGALLVVNHGE---VVGVVSER 55
>gi|15595447|ref|NP_248941.1| hypothetical protein PA0250 [Pseudomonas aeruginosa PAO1]
gi|218888991|ref|YP_002437855.1| putative CBS domain [Pseudomonas aeruginosa LESB58]
gi|254237513|ref|ZP_04930836.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254243349|ref|ZP_04936671.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|418583816|ref|ZP_13147884.1| putative CBS domain protein [Pseudomonas aeruginosa MPAO1/P1]
gi|418594207|ref|ZP_13158019.1| putative CBS domain protein [Pseudomonas aeruginosa MPAO1/P2]
gi|420136594|ref|ZP_14644637.1| hypothetical protein PACIG1_0140 [Pseudomonas aeruginosa CIG1]
gi|421151184|ref|ZP_15610809.1| hypothetical protein PABE171_0154 [Pseudomonas aeruginosa ATCC
14886]
gi|421157237|ref|ZP_15616627.1| hypothetical protein PABE173_0256 [Pseudomonas aeruginosa ATCC
25324]
gi|421168865|ref|ZP_15626921.1| hypothetical protein PABE177_3707 [Pseudomonas aeruginosa ATCC
700888]
gi|421181478|ref|ZP_15638977.1| hypothetical protein PAE2_3441 [Pseudomonas aeruginosa E2]
gi|421514863|ref|ZP_15961549.1| putative CBS domain protein [Pseudomonas aeruginosa PAO579]
gi|424943371|ref|ZP_18359134.1| putative CBS domain [Pseudomonas aeruginosa NCMG1179]
gi|451983277|ref|ZP_21931569.1| CBS domain protein [Pseudomonas aeruginosa 18A]
gi|9946090|gb|AAG03639.1|AE004463_4 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|126169444|gb|EAZ54955.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196727|gb|EAZ60790.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769214|emb|CAW24974.1| putative CBS domain [Pseudomonas aeruginosa LESB58]
gi|346059817|dbj|GAA19700.1| putative CBS domain [Pseudomonas aeruginosa NCMG1179]
gi|375044722|gb|EHS37315.1| putative CBS domain protein [Pseudomonas aeruginosa MPAO1/P2]
gi|375046794|gb|EHS39350.1| putative CBS domain protein [Pseudomonas aeruginosa MPAO1/P1]
gi|403250656|gb|EJY64069.1| hypothetical protein PACIG1_0140 [Pseudomonas aeruginosa CIG1]
gi|404348591|gb|EJZ74928.1| putative CBS domain protein [Pseudomonas aeruginosa PAO579]
gi|404527814|gb|EKA37946.1| hypothetical protein PABE171_0154 [Pseudomonas aeruginosa ATCC
14886]
gi|404528367|gb|EKA38468.1| hypothetical protein PABE177_3707 [Pseudomonas aeruginosa ATCC
700888]
gi|404543595|gb|EKA52852.1| hypothetical protein PAE2_3441 [Pseudomonas aeruginosa E2]
gi|404550813|gb|EKA59529.1| hypothetical protein PABE173_0256 [Pseudomonas aeruginosa ATCC
25324]
gi|451759075|emb|CCQ84092.1| CBS domain protein [Pseudomonas aeruginosa 18A]
Length = 144
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ +L AK + D+ V DA++ M + N+GAL+VV GE V G+++ER
Sbjct: 3 TVAQLLNAK---QNQQVYTIGADEMVLDALRLMAEKNIGALLVVNHGE---VVGVVSER 55
>gi|163792664|ref|ZP_02186641.1| putative signal-transduction protein with CBS domains [alpha
proteobacterium BAL199]
gi|159182369|gb|EDP66878.1| putative signal-transduction protein with CBS domains [alpha
proteobacterium BAL199]
Length = 142
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDILK+KG + V DA + + + +G+++++ E+ VAGI++ER I
Sbjct: 3 VSDILKSKGSAV----VTAPPSMPVADAARLLAEKRIGSILIL---ERNKVAGILSERDI 55
Query: 116 FKACHN 121
+A N
Sbjct: 56 VRALAN 61
>gi|156938201|ref|YP_001435997.1| hypothetical protein Igni_1414 [Ignicoccus hospitalis KIN4/I]
gi|156567185|gb|ABU82590.1| CBS domain containing protein [Ignicoccus hospitalis KIN4/I]
Length = 127
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
+WC + T+ + V M HNVG+++++ E + GI TER + +A
Sbjct: 12 VWCPPNSTLKEVVHKMRAHNVGSVLILNGDE---LVGIFTERDLVRA 55
>gi|398949768|ref|ZP_10673432.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Pseudomonas sp. GM33]
gi|426409536|ref|YP_007029635.1| CBS domain-containing protein [Pseudomonas sp. UW4]
gi|398158878|gb|EJM47209.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Pseudomonas sp. GM33]
gi|426267753|gb|AFY19830.1| CBS domain-containing protein [Pseudomonas sp. UW4]
Length = 146
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D VY+A+K M + NVGAL V++ G+ V G+I+ER
Sbjct: 24 DQMVYEALKMMAEKNVGALPVIEDGQ---VVGVISER 57
>gi|338737266|ref|YP_004674228.1| signal transduction protein [Hyphomicrobium sp. MC1]
gi|337757829|emb|CCB63652.1| Putative signal transduction protein with CBS domains (fragment)
[Hyphomicrobium sp. MC1]
Length = 145
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ +ILKAK + L DDT+ V+ + VGA+VV + G+ ++ GII+ER +
Sbjct: 3 VQNILKAK---KNAHVLTVRPDDTILKLVQMLRAEGVGAMVVSRDGQ--ALDGIISERDV 57
Query: 116 FKAC 119
+A
Sbjct: 58 VRAL 61
>gi|89897787|ref|YP_521274.1| hypothetical protein DSY5041 [Desulfitobacterium hafniense Y51]
gi|423075915|ref|ZP_17064629.1| CBS domain protein [Desulfitobacterium hafniense DP7]
gi|89337235|dbj|BAE86830.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361853143|gb|EHL05329.1| CBS domain protein [Desulfitobacterium hafniense DP7]
Length = 214
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
+ CT D + DA M +H +GAL VV+ G+ + GI+TE IF
Sbjct: 92 ITCTPDTKIEDAALLMREHGIGALPVVENGK---LVGIVTESDIF 133
>gi|386040493|ref|YP_005959447.1| inosine-5'-monophosphate dehydrogenase IMP dehydrogenase; IMPDH;
IMPD [Paenibacillus polymyxa M1]
gi|343096531|emb|CCC84740.1| inosine-5'-monophosphate dehydrogenase IMP dehydrogenase; IMPDH;
IMPD [Paenibacillus polymyxa M1]
Length = 241
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
+ T++DIL + + D T YDAV + Q N G L+V GE++ + GI+
Sbjct: 101 LKKLTVADIL--------SDPILISGDATAYDAVLMLFQQNTGTLMVT--GEEQELIGIV 150
Query: 111 TERGIFK 117
T + + K
Sbjct: 151 TRKDLLK 157
>gi|229589653|ref|YP_002871772.1| hypothetical protein PFLU2156 [Pseudomonas fluorescens SBW25]
gi|229361519|emb|CAY48395.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 146
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ +LK+K + + D TV++A+ M++ NVGAL V+K G V GII+ER
Sbjct: 3 TVAQVLKSKDQ-KNQEVHTIKHDHTVFEALVRMSEKNVGALPVIKEG---VVVGIISER 57
>gi|219670935|ref|YP_002461370.1| hypothetical protein Dhaf_4941 [Desulfitobacterium hafniense DCB-2]
gi|219541195|gb|ACL22934.1| CBS domain containing protein [Desulfitobacterium hafniense DCB-2]
Length = 208
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
+ CT D + DA M +H +GAL VV+ G+ + GI+TE IF
Sbjct: 86 ITCTPDTKIEDAALLMREHGIGALPVVENGK---LVGIVTESDIF 127
>gi|374326213|ref|YP_005084413.1| putative signal-transduction protein with CBS domains [Pyrobaculum
sp. 1860]
gi|356641482|gb|AET32161.1| putative signal-transduction protein with CBS domains [Pyrobaculum
sp. 1860]
Length = 132
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
+ T DT+ A + M NVGALVVV+ +I+ER I +A
Sbjct: 15 VTITPKDTLLQAAEKMAAENVGALVVVEADNPNKPVAVISERDIVRAI 62
>gi|452948756|gb|EME54234.1| signal transduction protein [Amycolatopsis decaplanina DSM 44594]
Length = 143
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L+ KG + + + V + ++ + +HNVGALVVV + + GI++ER +
Sbjct: 3 ISDLLRNKG----AAVATVSPETNVTELLERLAEHNVGALVVVDA--EGGIVGIVSERDV 56
Query: 116 FK 117
+
Sbjct: 57 VR 58
>gi|392395687|ref|YP_006432289.1| hypothetical protein Desde_4238 [Desulfitobacterium dehalogenans
ATCC 51507]
gi|390526765|gb|AFM02496.1| CBS domain-containing protein [Desulfitobacterium dehalogenans ATCC
51507]
Length = 214
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
+ CT D + DA M +H +GAL VV+ G+ + GI+TE IF
Sbjct: 92 ITCTPDTKIEDAALLMREHGIGALPVVENGK---LVGIVTESDIF 133
>gi|387127198|ref|YP_006295803.1| inosine-5'-monophosphate dehydrogenase [Methylophaga sp. JAM1]
gi|386274260|gb|AFI84158.1| Inosine-5'-monophosphate dehydrogenase [Methylophaga sp. JAM1]
Length = 149
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
I K KGK G T D++ AV+ M +H +G+LVV G ++ GI++ER +
Sbjct: 6 ITKNKGKPVIG----LTPTDSLDKAVRLMMEHRIGSLVVTDNG---ALVGILSERDLLNV 58
Query: 119 CH 120
H
Sbjct: 59 LH 60
>gi|53717172|ref|YP_105966.1| hypothetical protein BMAA1350 [Burkholderia mallei ATCC 23344]
gi|53721906|ref|YP_110891.1| hypothetical protein BPSS0882 [Burkholderia pseudomallei K96243]
gi|67643288|ref|ZP_00442035.1| CBS domain protein [Burkholderia mallei GB8 horse 4]
gi|76818563|ref|YP_337630.1| hypothetical protein BURPS1710b_A2480 [Burkholderia pseudomallei
1710b]
gi|121597823|ref|YP_989945.1| hypothetical protein BMASAVP1_0334 [Burkholderia mallei SAVP1]
gi|124381836|ref|YP_001024428.1| hypothetical protein BMA10229_0612 [Burkholderia mallei NCTC 10229]
gi|126443222|ref|YP_001062287.1| CBS domain-containing protein [Burkholderia pseudomallei 668]
gi|126445993|ref|YP_001078149.1| CBS domain-containing protein [Burkholderia mallei NCTC 10247]
gi|126457700|ref|YP_001075253.1| CBS domain-containing protein [Burkholderia pseudomallei 1106a]
gi|134278834|ref|ZP_01765547.1| CBS domain protein [Burkholderia pseudomallei 305]
gi|167000166|ref|ZP_02265986.1| CBS domain protein [Burkholderia mallei PRL-20]
gi|167723227|ref|ZP_02406463.1| CBS domain protein [Burkholderia pseudomallei DM98]
gi|167742198|ref|ZP_02414972.1| CBS domain protein [Burkholderia pseudomallei 14]
gi|167819373|ref|ZP_02451053.1| CBS domain protein [Burkholderia pseudomallei 91]
gi|167827746|ref|ZP_02459217.1| CBS domain protein [Burkholderia pseudomallei 9]
gi|167849220|ref|ZP_02474728.1| CBS domain protein [Burkholderia pseudomallei B7210]
gi|167897818|ref|ZP_02485220.1| CBS domain protein [Burkholderia pseudomallei 7894]
gi|167906163|ref|ZP_02493368.1| CBS domain protein [Burkholderia pseudomallei NCTC 13177]
gi|167914486|ref|ZP_02501577.1| CBS domain protein [Burkholderia pseudomallei 112]
gi|167922385|ref|ZP_02509476.1| CBS domain protein [Burkholderia pseudomallei BCC215]
gi|217418559|ref|ZP_03450066.1| CBS domain protein [Burkholderia pseudomallei 576]
gi|226197756|ref|ZP_03793331.1| CBS domain protein [Burkholderia pseudomallei Pakistan 9]
gi|237509954|ref|ZP_04522669.1| CBS domain protein [Burkholderia pseudomallei MSHR346]
gi|242313105|ref|ZP_04812122.1| CBS domain protein [Burkholderia pseudomallei 1106b]
gi|254174393|ref|ZP_04881055.1| CBS domain protein [Burkholderia mallei ATCC 10399]
gi|254183336|ref|ZP_04889928.1| CBS domain protein [Burkholderia pseudomallei 1655]
gi|254189969|ref|ZP_04896478.1| CBS domain protein [Burkholderia pseudomallei Pasteur 52237]
gi|254193127|ref|ZP_04899562.1| CBS domain protein [Burkholderia pseudomallei S13]
gi|254200811|ref|ZP_04907176.1| CBS domain protein [Burkholderia mallei FMH]
gi|254204781|ref|ZP_04911134.1| CBS domain protein [Burkholderia mallei JHU]
gi|254263370|ref|ZP_04954235.1| CBS domain protein [Burkholderia pseudomallei 1710a]
gi|254300236|ref|ZP_04967682.1| CBS domain protein [Burkholderia pseudomallei 406e]
gi|254357030|ref|ZP_04973305.1| CBS domain protein [Burkholderia mallei 2002721280]
gi|386864670|ref|YP_006277618.1| hypothetical protein BP1026B_II0968 [Burkholderia pseudomallei
1026b]
gi|403522515|ref|YP_006658084.1| hypothetical protein BPC006_II1233 [Burkholderia pseudomallei
BPC006]
gi|418395944|ref|ZP_12969846.1| CBS domain-containing protein [Burkholderia pseudomallei 354a]
gi|418535801|ref|ZP_13101538.1| CBS domain-containing protein [Burkholderia pseudomallei 1026a]
gi|418543432|ref|ZP_13108789.1| CBS domain-containing protein [Burkholderia pseudomallei 1258a]
gi|418549968|ref|ZP_13114976.1| CBS domain-containing protein [Burkholderia pseudomallei 1258b]
gi|418555654|ref|ZP_13120344.1| CBS domain-containing protein [Burkholderia pseudomallei 354e]
gi|52212320|emb|CAH38344.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52423142|gb|AAU46712.1| CBS domain protein [Burkholderia mallei ATCC 23344]
gi|76583036|gb|ABA52510.1| CBS domain protein [Burkholderia pseudomallei 1710b]
gi|121225621|gb|ABM49152.1| CBS domain protein [Burkholderia mallei SAVP1]
gi|124289856|gb|ABM99125.1| CBS domain protein [Burkholderia mallei NCTC 10229]
gi|126222713|gb|ABN86218.1| CBS domain protein [Burkholderia pseudomallei 668]
gi|126231468|gb|ABN94881.1| CBS domain protein [Burkholderia pseudomallei 1106a]
gi|126238847|gb|ABO01959.1| CBS domain protein [Burkholderia mallei NCTC 10247]
gi|134249253|gb|EBA49334.1| CBS domain protein [Burkholderia pseudomallei 305]
gi|147748423|gb|EDK55498.1| CBS domain protein [Burkholderia mallei FMH]
gi|147754367|gb|EDK61431.1| CBS domain protein [Burkholderia mallei JHU]
gi|148026057|gb|EDK84180.1| CBS domain protein [Burkholderia mallei 2002721280]
gi|157809884|gb|EDO87054.1| CBS domain protein [Burkholderia pseudomallei 406e]
gi|157937646|gb|EDO93316.1| CBS domain protein [Burkholderia pseudomallei Pasteur 52237]
gi|160695439|gb|EDP85409.1| CBS domain protein [Burkholderia mallei ATCC 10399]
gi|169649881|gb|EDS82574.1| CBS domain protein [Burkholderia pseudomallei S13]
gi|184213869|gb|EDU10912.1| CBS domain protein [Burkholderia pseudomallei 1655]
gi|217397863|gb|EEC37878.1| CBS domain protein [Burkholderia pseudomallei 576]
gi|225930365|gb|EEH26377.1| CBS domain protein [Burkholderia pseudomallei Pakistan 9]
gi|235002159|gb|EEP51583.1| CBS domain protein [Burkholderia pseudomallei MSHR346]
gi|238524599|gb|EEP88031.1| CBS domain protein [Burkholderia mallei GB8 horse 4]
gi|242136344|gb|EES22747.1| CBS domain protein [Burkholderia pseudomallei 1106b]
gi|243063818|gb|EES46004.1| CBS domain protein [Burkholderia mallei PRL-20]
gi|254214372|gb|EET03757.1| CBS domain protein [Burkholderia pseudomallei 1710a]
gi|385352840|gb|EIF59227.1| CBS domain-containing protein [Burkholderia pseudomallei 1258a]
gi|385353208|gb|EIF59569.1| CBS domain-containing protein [Burkholderia pseudomallei 1258b]
gi|385354522|gb|EIF60786.1| CBS domain-containing protein [Burkholderia pseudomallei 1026a]
gi|385368339|gb|EIF73796.1| CBS domain-containing protein [Burkholderia pseudomallei 354e]
gi|385373249|gb|EIF78304.1| CBS domain-containing protein [Burkholderia pseudomallei 354a]
gi|385661798|gb|AFI69220.1| CBS domain-containing protein [Burkholderia pseudomallei 1026b]
gi|403077582|gb|AFR19161.1| CBS domain-containing protein [Burkholderia pseudomallei BPC006]
Length = 154
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
S T++ IL++K + D+VY+A+K M + ++GAL+V+ + ++AGI+TE
Sbjct: 2 SLTVAQILRSKPDSG-RTIHMVEKSDSVYNAIKLMAEKSIGALLVM---DGANIAGIVTE 57
Query: 113 R 113
R
Sbjct: 58 R 58
>gi|407279412|ref|ZP_11107882.1| IMP dehydrogenase [Rhodococcus sp. P14]
Length = 142
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG D +V D + + ++NVGALVV++ G +V GI++ER +
Sbjct: 3 IADVLRNKGP----VVATVDPDLSVEDMIGELARNNVGALVVMEGG---AVIGIVSERDV 55
Query: 116 FKACHN 121
+ H
Sbjct: 56 VRRLHQ 61
>gi|448623311|ref|ZP_21669854.1| hypothetical protein C438_12523 [Haloferax denitrificans ATCC
35960]
gi|445752713|gb|EMA04135.1| hypothetical protein C438_12523 [Haloferax denitrificans ATCC
35960]
Length = 380
Score = 37.0 bits (84), Expect = 1.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T +++V DAV M +HN+ LVV + V G++T+ + +A
Sbjct: 214 TPEESVRDAVARMLEHNIAGLVVTPAADDGEVLGVVTKTDVLRA 257
>gi|107099239|ref|ZP_01363157.1| hypothetical protein PaerPA_01000250 [Pseudomonas aeruginosa PACS2]
gi|116053963|ref|YP_788401.1| hypothetical protein PA14_03090 [Pseudomonas aeruginosa UCBPP-PA14]
gi|296386735|ref|ZP_06876234.1| CBS domain-containing protein [Pseudomonas aeruginosa PAb1]
gi|313112175|ref|ZP_07797954.1| putative CBS domain-containing protein [Pseudomonas aeruginosa
39016]
gi|355646413|ref|ZP_09054412.1| hypothetical protein HMPREF1030_03498 [Pseudomonas sp. 2_1_26]
gi|386056315|ref|YP_005972837.1| putative CBS domain-containing protein [Pseudomonas aeruginosa M18]
gi|386063229|ref|YP_005978533.1| hypothetical protein NCGM2_0256 [Pseudomonas aeruginosa NCGM2.S1]
gi|392981658|ref|YP_006480245.1| hypothetical protein PADK2_01240 [Pseudomonas aeruginosa DK2]
gi|416864807|ref|ZP_11915531.1| CBS domain-containing protein [Pseudomonas aeruginosa 138244]
gi|416882033|ref|ZP_11921757.1| CBS domain-containing protein [Pseudomonas aeruginosa 152504]
gi|419756542|ref|ZP_14282890.1| hypothetical protein CF510_26438 [Pseudomonas aeruginosa
PADK2_CF510]
gi|421171943|ref|ZP_15629730.1| hypothetical protein PACI27_0206 [Pseudomonas aeruginosa CI27]
gi|115589184|gb|ABJ15199.1| putative CBS domain [Pseudomonas aeruginosa UCBPP-PA14]
gi|310884456|gb|EFQ43050.1| putative CBS domain-containing protein [Pseudomonas aeruginosa
39016]
gi|334834902|gb|EGM13819.1| CBS domain-containing protein [Pseudomonas aeruginosa 138244]
gi|334835425|gb|EGM14301.1| CBS domain-containing protein [Pseudomonas aeruginosa 152504]
gi|347302621|gb|AEO72735.1| putative CBS domain protein [Pseudomonas aeruginosa M18]
gi|348031788|dbj|BAK87148.1| CBS domain-containing protein [Pseudomonas aeruginosa NCGM2.S1]
gi|354828553|gb|EHF12671.1| hypothetical protein HMPREF1030_03498 [Pseudomonas sp. 2_1_26]
gi|384397074|gb|EIE43489.1| hypothetical protein CF510_26438 [Pseudomonas aeruginosa
PADK2_CF510]
gi|392317163|gb|AFM62543.1| CBS domain-containing protein [Pseudomonas aeruginosa DK2]
gi|404538684|gb|EKA48207.1| hypothetical protein PACI27_0206 [Pseudomonas aeruginosa CI27]
gi|453045303|gb|EME93023.1| hypothetical protein H123_17208 [Pseudomonas aeruginosa PA21_ST175]
Length = 144
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ +L AK + D+ V DA++ M + N+GAL+VV GE V G+++ER
Sbjct: 3 TVAQLLNAK---QNQQVYTIGPDEMVLDALRLMAEKNIGALLVVNHGE---VVGVVSER 55
>gi|223938924|ref|ZP_03630810.1| putative signal transduction protein with CBS domains [bacterium
Ellin514]
gi|223892351|gb|EEF58826.1| putative signal transduction protein with CBS domains [bacterium
Ellin514]
Length = 149
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111
S TI IL KGK +W TVY+AV+ M + NVGAL+V+ E + G+ +
Sbjct: 4 SGTIDSILNYKGKQ-----IWSIQPFATVYEAVEKMAEKNVGALLVM---ENDRLVGMFS 55
Query: 112 ER 113
ER
Sbjct: 56 ER 57
>gi|307596247|ref|YP_003902564.1| putative CBS domain-containing signal transduction protein
[Vulcanisaeta distributa DSM 14429]
gi|307551448|gb|ADN51513.1| putative signal transduction protein with CBS domains [Vulcanisaeta
distributa DSM 14429]
Length = 156
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
L T D +AV M + N G++VVV+ + GIITER + +A N
Sbjct: 26 LVITEDRPFIEAVDLMAKENTGSVVVVEDLNSMKLRGIITERDVIRALAN 75
>gi|319792508|ref|YP_004154148.1| cbs domain containing protein [Variovorax paradoxus EPS]
gi|315594971|gb|ADU36037.1| CBS domain containing protein [Variovorax paradoxus EPS]
Length = 151
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDIL+ KG + T DD + +A +M + ++G+LVV++ G+ + G++T R +
Sbjct: 3 VSDILRVKG----NTLFTITPDDLLAEAATTMAEKDIGSLVVMEHGD---LVGMLTFREV 55
Query: 116 FKACHN 121
A N
Sbjct: 56 IVAIVN 61
>gi|383320769|ref|YP_005381610.1| transcriptional regulator [Methanocella conradii HZ254]
gi|379322139|gb|AFD01092.1| putative transcriptional regulator [Methanocella conradii HZ254]
Length = 170
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
LW + DD + DA M +H V LVV+K G+ + GIIT I
Sbjct: 120 LWTSPDDDIEDAAALMVKHKVNRLVVLKDGK---LVGIITRDDII 161
>gi|167839482|ref|ZP_02466166.1| CBS domain protein [Burkholderia thailandensis MSMB43]
gi|424905115|ref|ZP_18328622.1| CBS domain protein [Burkholderia thailandensis MSMB43]
gi|390929509|gb|EIP86912.1| CBS domain protein [Burkholderia thailandensis MSMB43]
Length = 154
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 8/63 (12%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
S T++ IL++K D T + D+VY+A+K M + ++GAL+V+ + ++AGI+
Sbjct: 2 SLTVAQILRSK---PDSGRTIHTIEKSDSVYNAIKLMAERSIGALLVM---DGANIAGIV 55
Query: 111 TER 113
TER
Sbjct: 56 TER 58
>gi|126459949|ref|YP_001056227.1| signal-transduction protein [Pyrobaculum calidifontis JCM 11548]
gi|126249670|gb|ABO08761.1| putative signal-transduction protein with CBS domains [Pyrobaculum
calidifontis JCM 11548]
Length = 160
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
CT + + + V+ M + VG++VVV P + GI+ ER + +A
Sbjct: 30 CTPNTPLREVVELMVERGVGSVVVVDPANPRRPVGIVGERDVLRA 74
>gi|328872298|gb|EGG20665.1| hypothetical protein DFA_00526 [Dictyostelium fasciculatum]
Length = 244
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 50 GFESTTISDILKAKGKGADG----SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS 105
GF + IS +L KG G + + +DTV A+K M + VGA++VV Q
Sbjct: 82 GFVDSKISSLLAQKGLPLKGQQAPNIIRVRENDTVLTAIKQMHTNKVGAVIVV--DSQNK 139
Query: 106 VAGIITERGIFKAC 119
+ GI +ER +
Sbjct: 140 MTGIFSERDYLNSL 153
>gi|374632807|ref|ZP_09705174.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Metallosphaera yellowstonensis MK1]
gi|373524291|gb|EHP69168.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Metallosphaera yellowstonensis MK1]
Length = 141
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 66 GADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
G + + DDT+Y AVK M + N+ L+VV + ++ G+I+ R I + H
Sbjct: 72 GTTKNLVTVKEDDTIYTAVKKMAERNLRHLIVVDS--KGNLVGVISVRDIIRESH 124
>gi|302525541|ref|ZP_07277883.1| signal-transduction protein [Streptomyces sp. AA4]
gi|302434436|gb|EFL06252.1| signal-transduction protein [Streptomyces sp. AA4]
Length = 143
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I+D+L+ KG + + TV + + + +HNVGA+VVV + +AGI++ER +
Sbjct: 3 IADVLQRKG----ATVATVSPGTTVAELLAGLARHNVGAMVVVD--AEGGIAGIVSERDV 56
Query: 116 FKACHN 121
+ ++
Sbjct: 57 VRKLND 62
>gi|390335277|ref|XP_003724107.1| PREDICTED: uncharacterized protein LOC100893367 [Strongylocentrotus
purpuratus]
Length = 293
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 20 LQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDT 79
L + +LV+P+LR + + S AR+ H F+++ +S +L K G W D+T
Sbjct: 208 LLQTKLVDPLLRCALDRACIAPSGARLGRHRFDASALSLLLY---KNMRGEWSEANNDNT 264
Query: 80 VYDAV 84
++D V
Sbjct: 265 IFDEV 269
>gi|339325439|ref|YP_004685132.1| hypothetical protein CNE_1c13000 [Cupriavidus necator N-1]
gi|338165596|gb|AEI76651.1| hypothetical protein CNE_1c13000 [Cupriavidus necator N-1]
Length = 148
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
+SDIL+ KG + L+ T DT + AV +M +H++G+LVV++ G+ + G++T R
Sbjct: 3 VSDILQIKG-----NTLYTVTPDTSLLVAVHTMAEHDIGSLVVMEYGD---LVGMLTFRE 54
Query: 115 IFKAC 119
I +
Sbjct: 55 IIETL 59
>gi|194289349|ref|YP_002005256.1| hypothetical protein RALTA_A1226 [Cupriavidus taiwanensis LMG
19424]
gi|193223184|emb|CAQ69189.1| conserved hypothetical protein, CBS (cystathionine-beta-synthase)
domains [Cupriavidus taiwanensis LMG 19424]
Length = 148
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
+SDIL+ KG + L+ T DT + AV +M +H++G+LVV++ G+ + G++T R
Sbjct: 3 VSDILQIKG-----NTLYTVTPDTSLLVAVHTMAEHDIGSLVVMEYGD---LVGMLTFRE 54
Query: 115 IFKAC 119
I +
Sbjct: 55 IIETL 59
>gi|171186269|ref|YP_001795188.1| signal-transduction protein [Pyrobaculum neutrophilum V24Sta]
gi|170935481|gb|ACB40742.1| putative signal-transduction protein with CBS domains [Pyrobaculum
neutrophilum V24Sta]
Length = 139
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
T D TV +A + M H VG LVVV ++ G+++ER + KA
Sbjct: 14 VTPDATVEEAAEKMITHRVGLLVVVDKETRRKPIGVVSERDLLKAV 59
>gi|91778034|ref|YP_553242.1| hypothetical protein Bxe_B2095 [Burkholderia xenovorans LB400]
gi|91690694|gb|ABE33892.1| Conserved hypothetical protein [Burkholderia xenovorans LB400]
Length = 164
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 55 TISDILKAKGKGADGSWLWCT-TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+++ +L++K +W T +VYDA+ M VGAL+V G +AGI+TER
Sbjct: 3 SVAQLLRSK----TSQRVWSTQASASVYDAIAVMAHRQVGALIVAHEGR---IAGIVTER 55
>gi|113867333|ref|YP_725822.1| hypothetical protein H16_A1314 [Ralstonia eutropha H16]
gi|113526109|emb|CAJ92454.1| conserved hypothetical protein with CBS domain [Ralstonia eutropha
H16]
Length = 148
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
+SDIL+ KG + L+ T DT + AV +M +H++G+LVV++ G+ + G++T R
Sbjct: 3 VSDILQIKG-----NTLYTVTPDTSLLVAVHTMAEHDIGSLVVMEYGD---LVGMLTFRE 54
Query: 115 IFKAC 119
I +
Sbjct: 55 IIETL 59
>gi|254000112|ref|YP_003052175.1| putative signal transduction protein [Methylovorus glucosetrophus
SIP3-4]
gi|313202072|ref|YP_004040730.1| signal transduction protein [Methylovorus sp. MP688]
gi|253986791|gb|ACT51648.1| putative signal transduction protein with CBS domains [Methylovorus
glucosetrophus SIP3-4]
gi|312441388|gb|ADQ85494.1| putative signal transduction protein with CBS domains [Methylovorus
sp. MP688]
Length = 142
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ +L+ KG + L D VYDA+K M ++ VGAL+V++ +++ GI +ER
Sbjct: 3 TVRQLLEEKG----NTILSVGPDSLVYDALKIMAEYRVGALLVMRG---QALVGIFSER 54
>gi|332526774|ref|ZP_08402876.1| CBS domain containing protein [Rubrivivax benzoatilyticus JA2]
gi|332111177|gb|EGJ11209.1| CBS domain containing protein [Rubrivivax benzoatilyticus JA2]
Length = 153
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%), Gaps = 10/68 (14%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
++DIL+ KG + + D + +A+KSM++ +VG+LVV++ G+ + G++T R +
Sbjct: 3 VTDILRVKG----NTTYTVSPDQLLAEAMKSMSEFDVGSLVVMEHGD---LVGMLTFREV 55
Query: 116 FKA---CH 120
A CH
Sbjct: 56 ISAVVECH 63
>gi|284036381|ref|YP_003386311.1| signal transduction protein with CBS domains [Spirosoma linguale
DSM 74]
gi|283815674|gb|ADB37512.1| putative signal transduction protein with CBS domains [Spirosoma
linguale DSM 74]
Length = 145
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
++D TV D +K M + N+GAL+VV GE + GI +ER
Sbjct: 18 VSSDQTVLDGLKVMAEKNIGALLVVDNGE---LTGIFSER 54
>gi|374850834|dbj|BAL53812.1| signal transduction protein [uncultured planctomycete]
Length = 151
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ ++L+ KG G L + TV A + M QH++G LVV +++ + GI++ER I
Sbjct: 4 LRELLQLKG----GQVLTISPSQTVLAAAELMNQHHIGCLVVC---DERGICGILSERDI 56
Query: 116 FK 117
+
Sbjct: 57 LQ 58
>gi|303245552|ref|ZP_07331835.1| putative signal transduction protein with CBS domains
[Desulfovibrio fructosovorans JJ]
gi|302492815|gb|EFL52680.1| putative signal transduction protein with CBS domains
[Desulfovibrio fructosovorans JJ]
Length = 220
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
T DDTV A + +HNVG L VV + V G+IT+ IFK
Sbjct: 89 VTPDDTVEKAAVLLLRHNVGGLPVVD--DDNKVVGVITDSDIFKVL 132
>gi|260219903|emb|CBA26901.1| hypothetical protein Csp_G38950 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 629
Score = 36.6 bits (83), Expect = 2.1, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 64 GKGADGSWLWCT-TDDTVYDAVKSM-TQHNVGALVVVKPGEQKSVAGIITERGI 115
KGAD + CT T V A+++M TQH V LVVV P K+VA + ERGI
Sbjct: 553 AKGADWLLVLCTHTGADVLSALQAMPTQHGVARLVVVAP-RPKAVALWLAERGI 605
>gi|374315236|ref|YP_005061664.1| hypothetical protein [Sphaerochaeta pleomorpha str. Grapes]
gi|359350880|gb|AEV28654.1| CBS-domain-containing membrane protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 147
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
DDT+ A+ +T+H +GAL+V+ E+ ++ GI++ER I K
Sbjct: 21 DDTLSHALLQLTEHKIGALLVL--DERGAIKGILSERDIVK 59
>gi|300853495|ref|YP_003778479.1| hypothetical protein CLJU_c02930 [Clostridium ljungdahlii DSM
13528]
gi|300433610|gb|ADK13377.1| conserved hypothetical protein containing CBS domain [Clostridium
ljungdahlii DSM 13528]
Length = 142
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
S + DDTV A + M Q+N+GA+ V K G+ V GI+T+R I
Sbjct: 10 SVISLNDDDTVEKAAQIMQQNNIGAVPVCKNGK---VIGIVTDRDI 52
>gi|15668834|ref|NP_247637.1| inosine-5'-monophosphate dehydrogenase GuaB [Methanocaldococcus
jannaschii DSM 2661]
gi|2496100|sp|Q58069.1|Y653_METJA RecName: Full=Uncharacterized protein MJ0653
gi|1592300|gb|AAB98648.1| inosine-5'-monophosphate dehydrogenase (guaB) [Methanocaldococcus
jannaschii DSM 2661]
Length = 194
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
T + ++YD MT++N+GA+V+V E GI+TER I K
Sbjct: 21 TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVK 60
>gi|296269591|ref|YP_003652223.1| putative CBS domain-containing signal transduction protein
[Thermobispora bispora DSM 43833]
gi|296092378|gb|ADG88330.1| putative signal transduction protein with CBS domains
[Thermobispora bispora DSM 43833]
Length = 142
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I DIL+ KG + D TV + + + + N+GA+VV G ++AGI++ER +
Sbjct: 3 IRDILRKKGS----AVATVRPDATVRELLAKLAELNIGAVVVSPDG--NAIAGIVSERDV 56
Query: 116 FKACHN 121
+ H
Sbjct: 57 VRRLHE 62
>gi|271964532|ref|YP_003338728.1| signal-transduction protein [Streptosporangium roseum DSM 43021]
gi|270507707|gb|ACZ85985.1| signal-transduction protein [Streptosporangium roseum DSM 43021]
Length = 142
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 63 KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
+GKG D + + + TV + ++ + +HN+GA+VV + G S+AGI++ER + + ++
Sbjct: 8 QGKGTDVTTVH--PEATVTELLELLAEHNIGAVVVSEDG--SSIAGIVSERDVVRRLND 62
>gi|339485118|ref|YP_004699646.1| hypothetical protein PPS_0177 [Pseudomonas putida S16]
gi|338835961|gb|AEJ10766.1| CBS domain-containing protein [Pseudomonas putida S16]
Length = 145
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
DD+V DA+K + + NVGAL VV E V GI++ER
Sbjct: 23 DDSVLDALKLLAEKNVGALPVV---EGNQVVGIVSER 56
>gi|188580414|ref|YP_001923859.1| hypothetical protein Mpop_1152 [Methylobacterium populi BJ001]
gi|179343912|gb|ACB79324.1| CBS domain containing protein [Methylobacterium populi BJ001]
Length = 139
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 27/42 (64%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
D +V +A + + Q GALVVV+ +V G++T+R IF+A
Sbjct: 20 DRSVAEAAQLLAQPGTGALVVVEGDADATVTGLLTQRDIFRA 61
>gi|375308130|ref|ZP_09773417.1| putative signal transduction protein [Paenibacillus sp. Aloe-11]
gi|375080461|gb|EHS58682.1| putative signal transduction protein [Paenibacillus sp. Aloe-11]
Length = 214
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
+ T++DIL + + D T YDAV + Q N G L+V GE++ GI+
Sbjct: 74 LKKLTVADIL--------SEPILISGDATAYDAVLMLFQQNTGTLMVT--GEEQEFIGIV 123
Query: 111 TERGIFK 117
T + + K
Sbjct: 124 TRKDLLK 130
>gi|212640156|ref|YP_002316676.1| hypothetical protein Aflv_2334 [Anoxybacillus flavithermus WK1]
gi|212561636|gb|ACJ34691.1| FOG: CBS domain protein [Anoxybacillus flavithermus WK1]
Length = 154
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 3/41 (7%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
T D +V +A + M +HNVGA+ VV+ G+ V G+IT+R I
Sbjct: 30 TPDQSVQEAAQLMNEHNVGAIPVVENGK---VKGMITDRDI 67
>gi|330835092|ref|YP_004409820.1| signal-transduction protein [Metallosphaera cuprina Ar-4]
gi|329567231|gb|AEB95336.1| signal-transduction protein [Metallosphaera cuprina Ar-4]
Length = 164
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
+DT+ A M HN+G+++VV Q + GI+TER + +A
Sbjct: 19 EDTIVSAATEMKNHNIGSMLVVD--NQGQIVGIVTERDVVRA 58
>gi|423691049|ref|ZP_17665569.1| CBS domain protein [Pseudomonas fluorescens SS101]
gi|387999980|gb|EIK61309.1| CBS domain protein [Pseudomonas fluorescens SS101]
Length = 146
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 55 TISDILKAKG-KGADGSWL-WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
T++ +LKAK K D + W D TV++A+ M++ NVGAL VVK V GII+E
Sbjct: 3 TVAQLLKAKDQKNQDVHTIKW---DHTVFEALVRMSEKNVGALPVVKDD---VVVGIISE 56
Query: 113 R 113
R
Sbjct: 57 R 57
>gi|15679235|ref|NP_276352.1| inosine-5'-monophosphate dehydrogenase [Methanothermobacter
thermautotrophicus str. Delta H]
gi|2622335|gb|AAB85713.1| inosine-5'-monophosphate dehydrogenase related protein III
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 313
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ TT D++ DAV M +++VGAL VV E+ +AGI++ER
Sbjct: 120 ISITTRDSIADAVSMMLENSVGALPVVDDDEK--IAGIVSER 159
>gi|73540949|ref|YP_295469.1| hypothetical protein Reut_A1254 [Ralstonia eutropha JMP134]
gi|72118362|gb|AAZ60625.1| CBS [Ralstonia eutropha JMP134]
Length = 148
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 9/65 (13%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDT-VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
+SDIL+ KG + L+ T DT + AV +M +H++G+LVV++ G+ + G++T R
Sbjct: 3 VSDILQIKG-----NTLYTVTPDTALLVAVHTMAEHDIGSLVVMEYGD---LVGMLTFRE 54
Query: 115 IFKAC 119
I +
Sbjct: 55 IIETL 59
>gi|398304641|ref|ZP_10508227.1| putative oxidoreductase [Bacillus vallismortis DV1-F-3]
Length = 148
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV-KPGEQKSVAGIITE 112
T I D++ A +CT D VY+A M N+GA+ VV K GE ++ GI+T+
Sbjct: 2 TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANIGAVPVVDKDGE--TLVGIVTD 52
Query: 113 RGI 115
R +
Sbjct: 53 RDL 55
>gi|163840646|ref|YP_001625051.1| TetR family transcriptional regulator [Renibacterium salmoninarum
ATCC 33209]
gi|162954122|gb|ABY23637.1| transcriptional regulator, TetR family [Renibacterium salmoninarum
ATCC 33209]
Length = 197
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 31 RPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCT-TDDTVYDAVKSMTQ 89
R + R + + A +GF +T+++DIL G A +++ +D DA + M Q
Sbjct: 9 REQMRQRIQDAALACFARNGFSATSMADILTESGLSAGAIYVYYRGKEDLTADAARGMLQ 68
Query: 90 HNVGALVVVKPGE 102
+GA++ + G+
Sbjct: 69 ERIGAVLELAEGD 81
>gi|158430766|pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
gi|158430767|pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
gi|158430768|pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
gi|158430769|pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ +L+ KG + + DD+V++A++ M N+GAL+V+K + + GI+TER
Sbjct: 7 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTER 58
>gi|448604775|ref|ZP_21657820.1| hypothetical protein C441_07500 [Haloferax sulfurifontis ATCC
BAA-897]
gi|445743096|gb|ELZ94579.1| hypothetical protein C441_07500 [Haloferax sulfurifontis ATCC
BAA-897]
Length = 380
Score = 36.2 bits (82), Expect = 2.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T +++V DAV M +HN+ LVV + V G++T+ + +A
Sbjct: 214 TPEESVRDAVARMLEHNIAGLVVTPADDDGEVLGVVTKTDVLRA 257
>gi|18312548|ref|NP_559215.1| hypothetical protein PAE1315 [Pyrobaculum aerophilum str. IM2]
gi|18160014|gb|AAL63397.1| conserved protein with 2 CBS domains [Pyrobaculum aerophilum str.
IM2]
Length = 140
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
A + + C+ D + + + M + N+G+++VV P + GI+ ER + KA
Sbjct: 7 ARTNVVTCSPDTPIREVAEIMIKKNIGSVIVVDPAKPTGPIGIVGERDVVKA 58
>gi|300023302|ref|YP_003755913.1| signal transduction protein [Hyphomicrobium denitrificans ATCC
51888]
gi|299525123|gb|ADJ23592.1| putative signal transduction protein with CBS domains
[Hyphomicrobium denitrificans ATCC 51888]
Length = 143
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I ILK+K +G + +DT+ + ++ +GA+V+V GE V GII+ER I
Sbjct: 3 IGQILKSKARGV----MTARQEDTIQEIALRLSSRKIGAIVIV--GETGKVVGIISERDI 56
Query: 116 FK 117
+
Sbjct: 57 IR 58
>gi|385204300|ref|ZP_10031170.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Burkholderia sp. Ch1-1]
gi|385184191|gb|EIF33465.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Burkholderia sp. Ch1-1]
Length = 164
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+++ +L++K S C + VYDA+ M VGAL+V G +AGI+TER
Sbjct: 3 SVAQLLRSKASQRVWSTQACAS---VYDAIAVMAHRRVGALIVAHEGR---IAGIVTER 55
>gi|114777941|ref|ZP_01452855.1| inosine-5-monophosphate dehydrogenase related protein
[Mariprofundus ferrooxydans PV-1]
gi|114551728|gb|EAU54280.1| inosine-5-monophosphate dehydrogenase related protein
[Mariprofundus ferrooxydans PV-1]
Length = 143
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
L C DDT++DA + M G+L VV + + G+IT R
Sbjct: 6 LSCKADDTLHDAAQKMVMRRCGSLPVVDDNDSTKLVGVITIR 47
>gi|71906263|ref|YP_283850.1| CBS [Dechloromonas aromatica RCB]
gi|71845884|gb|AAZ45380.1| CBS protein [Dechloromonas aromatica RCB]
Length = 143
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 78 DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
DTVY A+ M QH VGAL+V+ GEQ + GI +ER
Sbjct: 22 DTVYHALTVMAQHEVGALLVLD-GEQ--LVGIFSER 54
>gi|398872534|ref|ZP_10627822.1| CBS domain-containing protein [Pseudomonas sp. GM74]
gi|398202271|gb|EJM89118.1| CBS domain-containing protein [Pseudomonas sp. GM74]
Length = 146
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D TV DA++ M + NVGAL V++ G+ V G+I+ER
Sbjct: 24 DQTVLDALRMMAEKNVGALPVMEEGQ---VVGVISER 57
>gi|292656511|ref|YP_003536408.1| hypothetical protein HVO_2384 [Haloferax volcanii DS2]
gi|433419157|ref|ZP_20405201.1| hypothetical protein D320_03281 [Haloferax sp. BAB2207]
gi|448290511|ref|ZP_21481659.1| hypothetical protein C498_07200 [Haloferax volcanii DS2]
gi|448569437|ref|ZP_21638697.1| hypothetical protein C456_05230 [Haloferax lucentense DSM 14919]
gi|448600115|ref|ZP_21655828.1| hypothetical protein C452_15784 [Haloferax alexandrinus JCM 10717]
gi|291371699|gb|ADE03926.1| CBS domain pair, putative [Haloferax volcanii DS2]
gi|432199518|gb|ELK55686.1| hypothetical protein D320_03281 [Haloferax sp. BAB2207]
gi|445578421|gb|ELY32826.1| hypothetical protein C498_07200 [Haloferax volcanii DS2]
gi|445724570|gb|ELZ76202.1| hypothetical protein C456_05230 [Haloferax lucentense DSM 14919]
gi|445735525|gb|ELZ87074.1| hypothetical protein C452_15784 [Haloferax alexandrinus JCM 10717]
Length = 380
Score = 36.2 bits (82), Expect = 2.6, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T D++V DAV M +H++ LVV + V G++T+ + +A
Sbjct: 214 TPDESVRDAVARMLEHDIAGLVVTPADDDGEVLGVVTKTDVLRA 257
>gi|334337368|ref|YP_004542520.1| signal transduction protein with CBS domains [Isoptericola
variabilis 225]
gi|334107736|gb|AEG44626.1| putative signal transduction protein with CBS domains [Isoptericola
variabilis 225]
Length = 147
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ D L+ KG + + D TV D + + +H +GA+VV G SV GI++ER +
Sbjct: 3 VRDTLRHKGD----AVVTVARDRTVRDLLALLAEHGIGAVVVSDDG--ASVDGIVSERDV 56
Query: 116 FKACH 120
+ H
Sbjct: 57 VRRLH 61
>gi|167572679|ref|ZP_02365553.1| CBS domain protein [Burkholderia oklahomensis C6786]
Length = 154
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 8/63 (12%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
S T++ IL++K D T + D+VY+A+K M + ++GAL+V+ + +AGI+
Sbjct: 2 SLTVAHILRSK---PDSGRTIHTIEKSDSVYNAIKLMAEKSIGALLVMDGAD---IAGIV 55
Query: 111 TER 113
TER
Sbjct: 56 TER 58
>gi|18313644|ref|NP_560311.1| hypothetical protein PAE2864 [Pyrobaculum aerophilum str. IM2]
gi|18161192|gb|AAL64493.1| conserved protein with 2 CBS domains [Pyrobaculum aerophilum str.
IM2]
Length = 129
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
G+ A + T D + AV+ M H+VG LV+V K V G+++ER I ++
Sbjct: 4 GEIASRPVITVTPDTPLEKAVELMADHDVGILVLVDKENPKRVVGVLSERDIVRS 58
>gi|167565573|ref|ZP_02358489.1| CBS domain protein [Burkholderia oklahomensis EO147]
Length = 154
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 8/63 (12%)
Query: 53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
S T++ IL++K D T + D+VY+A+K M + ++GAL+V+ + +AGI+
Sbjct: 2 SLTVAHILRSK---PDSGRTIHTIEKSDSVYNAIKLMAEKSIGALLVMDGAD---IAGIV 55
Query: 111 TER 113
TER
Sbjct: 56 TER 58
>gi|410659175|ref|YP_006911546.1| CBS domain protein [Dehalobacter sp. DCA]
gi|410662160|ref|YP_006914531.1| CBS domain protein [Dehalobacter sp. CF]
gi|409021530|gb|AFV03561.1| CBS domain protein [Dehalobacter sp. DCA]
gi|409024516|gb|AFV06546.1| CBS domain protein [Dehalobacter sp. CF]
Length = 220
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
++YDAV SM +NVG+L+V+ +++ + G+++ + I KA
Sbjct: 92 SIYDAVVSMFTNNVGSLIVI--NDERELKGMVSRKDILKAS 130
>gi|387893315|ref|YP_006323612.1| hypothetical protein PflA506_2125 [Pseudomonas fluorescens A506]
gi|387159645|gb|AFJ54844.1| CBS domain protein [Pseudomonas fluorescens A506]
Length = 146
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 55 TISDILKAKG-KGADGSWL-WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
T++ +LKAK K D + W D TV++A+ M++ NVGAL VVK V GII+E
Sbjct: 3 TVAQLLKAKDQKNQDVHTIKW---DHTVFEALVRMSEKNVGALPVVK---DDVVVGIISE 56
Query: 113 R 113
R
Sbjct: 57 R 57
>gi|297200190|ref|ZP_06917587.1| cystathionine beta-synthase [Streptomyces sviceus ATCC 29083]
gi|197713358|gb|EDY57392.1| cystathionine beta-synthase [Streptomyces sviceus ATCC 29083]
Length = 462
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S ++D+L K GA S + D+TV +A++ + ++ V + +VKP
Sbjct: 311 MADYGFLEDEGPSARVADVLNDKVHGAIPSLVHMHPDETVGEAIEVLREYGVSQMPIVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|169824006|ref|YP_001691617.1| inositol-monophosphate dehydrogenase [Finegoldia magna ATCC 29328]
gi|303234329|ref|ZP_07320968.1| inosine-5'-monophosphate dehydrogenase [Finegoldia magna BVS033A4]
gi|417925605|ref|ZP_12569024.1| inosine-5'-monophosphate dehydrogenase [Finegoldia magna
SY403409CC001050417]
gi|167830811|dbj|BAG07727.1| inositol-monophosphate dehydrogenase [Finegoldia magna ATCC 29328]
gi|302494445|gb|EFL54212.1| inosine-5'-monophosphate dehydrogenase [Finegoldia magna BVS033A4]
gi|341591231|gb|EGS34439.1| inosine-5'-monophosphate dehydrogenase [Finegoldia magna
SY403409CC001050417]
Length = 483
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 9 LSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHG-----FESTTIS------ 57
L + I+K+ + ++I L PM+ + + ES + M G ++ TI
Sbjct: 23 LPNETILKTRLTKKIELNIPMMSAGMDTVTESKMAIAMARQGGIGIIHKNMTIEEQAREV 82
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
D +K G + + DD + DA+K M+ + + + +VK E ++ GI+T R +
Sbjct: 83 DRVKRSENGIITDPFYLSADDKIVDALKLMSHYRISGVPIVK--EDMTLVGILTNRDV 138
>gi|171184890|ref|YP_001793809.1| signal-transduction protein [Pyrobaculum neutrophilum V24Sta]
gi|170934102|gb|ACB39363.1| putative signal-transduction protein with CBS domains [Pyrobaculum
neutrophilum V24Sta]
Length = 145
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 26/41 (63%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
++ +A K M + VG +VVV PG+ + G+++ER + +A
Sbjct: 22 SIREAAKLMAEARVGLVVVVDPGDPGRILGVVSERDVIRAV 62
>gi|395220025|ref|ZP_10402617.1| signal transduction protein with CBS domains [Pontibacter sp.
BAB1700]
gi|394453756|gb|EJF08577.1| signal transduction protein with CBS domains [Pontibacter sp.
BAB1700]
Length = 145
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ IL+ KG + TVY A+++M + NVGAL+V+ G+ AG+ TER
Sbjct: 3 TVRHILQKKG----NKVISVAPTSTVYSALETMVEQNVGALIVMDNGK---FAGMFTER 54
>gi|119871809|ref|YP_929816.1| signal-transduction protein [Pyrobaculum islandicum DSM 4184]
gi|119673217|gb|ABL87473.1| putative signal-transduction protein with CBS domains [Pyrobaculum
islandicum DSM 4184]
Length = 139
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
G+ A + D+TV +A + M VG LVVV K G+I+ER I +A
Sbjct: 4 GELATKPPVTIAPDETVENAAEKMASQRVGLLVVVDKNNPKKPIGVISERDIIRA 58
>gi|313891300|ref|ZP_07824918.1| CBS domain protein [Streptococcus pseudoporcinus SPIN 20026]
gi|416851715|ref|ZP_11908860.1| CBS domain protein [Streptococcus pseudoporcinus LQ 940-04]
gi|313120367|gb|EFR43488.1| CBS domain protein [Streptococcus pseudoporcinus SPIN 20026]
gi|356739204|gb|EHI64436.1| CBS domain protein [Streptococcus pseudoporcinus LQ 940-04]
Length = 220
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 11/83 (13%)
Query: 36 SRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGAL 95
S+ S+S M + T I DI+ K + T D ++ DA+ M +H +G L
Sbjct: 58 SKATSLSIYEMN-YLLNKTKIKDIMLKK-------VITITPDASLEDAIYLMLEHKIGVL 109
Query: 96 VVVKPGEQKSVAGIITERGIFKA 118
V+ + + GIIT+R +FKA
Sbjct: 110 PVL---DDNHLCGIITDRDVFKA 129
>gi|406671999|ref|ZP_11079234.1| inosine-5'-monophosphate dehydrogenase [Facklamia hominis CCUG
36813]
gi|405579776|gb|EKB53870.1| inosine-5'-monophosphate dehydrogenase [Facklamia hominis CCUG
36813]
Length = 492
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 73 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T D ++ DA K M Q+++ L VVK + ++ GIIT R +
Sbjct: 103 FLTPDQSIQDAQKMMAQYDISGLPVVKSQDDPTLVGIITARDV 145
>gi|315426521|dbj|BAJ48152.1| signal-transduction protein [Candidatus Caldiarchaeum subterraneum]
gi|343485273|dbj|BAJ50927.1| signal-transduction protein [Candidatus Caldiarchaeum subterraneum]
Length = 138
Score = 36.2 bits (82), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
TV DAVK M ++ V +LVV + QK G++TER I + C
Sbjct: 23 TVADAVKKMLENEVWSLVVTR---QKLPIGVVTERDIIRRC 60
>gi|393769455|ref|ZP_10357977.1| signal-transduction protein [Methylobacterium sp. GXF4]
gi|392724926|gb|EIZ82269.1| signal-transduction protein [Methylobacterium sp. GXF4]
Length = 143
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T++ IL KG S + + D T+ + ++ + + +GALVV SVAGII+ER
Sbjct: 2 TVARILAEKGS----SVVTVSPDKTLEEVIQILAEKRIGALVVAHA--DGSVAGIISERD 55
Query: 115 IFKA 118
I +A
Sbjct: 56 IMRA 59
>gi|330808646|ref|YP_004353108.1| hypothetical protein PSEBR_a1884 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423696482|ref|ZP_17670972.1| CBS domain protein [Pseudomonas fluorescens Q8r1-96]
gi|327376754|gb|AEA68104.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388003923|gb|EIK65250.1| CBS domain protein [Pseudomonas fluorescens Q8r1-96]
Length = 146
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ +L+ K + + + DD V A+ M + NVGAL+VVK E V GII+ER
Sbjct: 3 TVAQLLRIKDE-KNQQVHTISPDDMVLQALMRMAEKNVGALLVVKNDE---VLGIISER 57
>gi|302380044|ref|ZP_07268523.1| inosine-5'-monophosphate dehydrogenase [Finegoldia magna
ACS-171-V-Col3]
gi|302312270|gb|EFK94272.1| inosine-5'-monophosphate dehydrogenase [Finegoldia magna
ACS-171-V-Col3]
Length = 483
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 13/118 (11%)
Query: 9 LSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHG-----FESTTIS------ 57
L + I+K+ + ++I L PM+ + + ES + M G ++ TI
Sbjct: 23 LPNETILKTRLTKKIELNIPMMSAGMDTVTESKMAIAMARQGGIGIIHKNMTIEEQAREV 82
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
D +K G + + DD + DA+K M+ + + + +VK E ++ GI+T R +
Sbjct: 83 DRVKRSENGIITDPFYLSADDKIVDALKLMSHYRISGVPIVK--EDMTLVGILTNRDV 138
>gi|256424780|ref|YP_003125433.1| TetR family transcriptional regulator [Chitinophaga pinensis DSM
2588]
gi|256039688|gb|ACU63232.1| transcriptional regulator, TetR family [Chitinophaga pinensis DSM
2588]
Length = 243
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 46 MEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAV 84
++HG++ ++ D+ KA GKG + + D V+DAV
Sbjct: 62 FQKHGYQKVSMDDVAKAIGKGRSSLYYYYKNKDEVFDAV 100
>gi|150401183|ref|YP_001324949.1| signal transduction protein [Methanococcus aeolicus Nankai-3]
gi|150013886|gb|ABR56337.1| putative signal transduction protein with CBS domains
[Methanococcus aeolicus Nankai-3]
Length = 302
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 55 TISDILKAKGKGADG---------SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS 105
T+ DI K+ +G + + +T D ++DA++ M +H VG L+ V E
Sbjct: 223 TLHDIAKSLAEGLENGTVDKIMVKDVITISTKDKIFDAIEKMDKHKVGRLIAV--NEDNK 280
Query: 106 VAGIITERGIF 116
V GIIT I
Sbjct: 281 VEGIITRTDIM 291
>gi|152986795|ref|YP_001345731.1| hypothetical protein PSPA7_0335 [Pseudomonas aeruginosa PA7]
gi|452877772|ref|ZP_21955028.1| hypothetical protein G039_12481 [Pseudomonas aeruginosa VRFPA01]
gi|150961953|gb|ABR83978.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
gi|452185497|gb|EME12515.1| hypothetical protein G039_12481 [Pseudomonas aeruginosa VRFPA01]
Length = 144
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ +L AK + D+ V DA++ M + N+GAL+V+ GE V G+++ER
Sbjct: 3 TVAQLLNAK---QNQQVYTIGPDEMVLDALRLMAEKNIGALLVLNHGE---VVGVVSER 55
>gi|54022043|ref|YP_116285.1| hypothetical protein nfa790 [Nocardia farcinica IFM 10152]
gi|54013551|dbj|BAD54921.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length = 156
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT DI+K + W + DTV A + M VG+LVV E + + GI+T+R
Sbjct: 19 TTARDIMKPGAQ-------WISKQDTVERAAQLMADLGVGSLVVAD--ENERMCGIVTDR 69
Query: 114 GIFKAC 119
I C
Sbjct: 70 DIVVKC 75
>gi|30250323|ref|NP_842393.1| hypothetical protein NE2398 [Nitrosomonas europaea ATCC 19718]
gi|30181118|emb|CAD86310.1| CBS domain [Nitrosomonas europaea ATCC 19718]
Length = 146
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ +L+ KG + + DD+V++A++ M N+GAL+V+K + + GI+TER
Sbjct: 3 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTER 54
>gi|120610791|ref|YP_970469.1| hypothetical protein Aave_2114 [Acidovorax citrulli AAC00-1]
gi|120589255|gb|ABM32695.1| CBS domain containing membrane protein [Acidovorax citrulli
AAC00-1]
Length = 149
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T ++DIL++K A D++ DA++ M +GAL+V+ GE+ +AGI+TER
Sbjct: 2 TAVADILRSK---AHQEVFTIAPSDSMLDALRLMADKGIGALLVMD-GER--IAGIVTER 55
>gi|407780017|ref|ZP_11127265.1| hypothetical protein NA2_18570 [Nitratireductor pacificus pht-3B]
gi|407298147|gb|EKF17291.1| hypothetical protein NA2_18570 [Nitratireductor pacificus pht-3B]
Length = 143
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T+ IL KG+ + D ++ +A + + +H +GA+VV + Q +AGI++ER
Sbjct: 2 TVKAILDTKGR----DVVTIAPDKSLAEAAQILAEHGIGAVVVTRDAGQ--IAGILSERD 55
Query: 115 IFKAC 119
I +A
Sbjct: 56 IVRAV 60
>gi|399000051|ref|ZP_10702782.1| CBS domain-containing protein [Pseudomonas sp. GM18]
gi|398130463|gb|EJM19800.1| CBS domain-containing protein [Pseudomonas sp. GM18]
Length = 146
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D V DA+K M + NVGAL V++ G+ V G+I+ER
Sbjct: 24 DQMVLDALKMMAEKNVGALPVIEEGQ---VVGVISER 57
>gi|325970898|ref|YP_004247089.1| hypothetical protein [Sphaerochaeta globus str. Buddy]
gi|324026136|gb|ADY12895.1| CBS domain containing membrane protein [Sphaerochaeta globus str.
Buddy]
Length = 147
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ IL KGK + DD + A+ +T+H +GAL+V+ EQ + GI++ER I
Sbjct: 4 VQTILDQKGK----LVISIGPDDALSHALLKLTEHKIGALLVL--NEQGDIKGILSERDI 57
Query: 116 FK 117
+
Sbjct: 58 IR 59
>gi|291298469|ref|YP_003509747.1| cystathionine beta-synthase [Stackebrandtia nassauensis DSM 44728]
gi|290567689|gb|ADD40654.1| cystathionine beta-synthase [Stackebrandtia nassauensis DSM 44728]
Length = 454
Score = 35.8 bits (81), Expect = 3.2, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 46 MEEHGFES-----TTISDILKAKGKGAD-GSWLWCTTDDTVYDAVKSMTQHNVGALVVVK 99
+ E+GF S TT++D+L GKGAD ++ DTV DA+ + ++ V + V+K
Sbjct: 309 LTEYGFLSAGTSETTVADVL--AGKGADIPEFVHVHPTDTVRDAIAILREYGVSQMPVLK 366
Query: 100 ---PGEQKSVAGIITERGIFKA 118
P +AG + ER + A
Sbjct: 367 AEPPVVTGEIAGAVAERDLLDA 388
>gi|304322067|ref|YP_003855710.1| hypothetical protein PB2503_12654 [Parvularcula bermudensis
HTCC2503]
gi|303300969|gb|ADM10568.1| hypothetical protein PB2503_12654 [Parvularcula bermudensis
HTCC2503]
Length = 144
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 6/60 (10%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
D+LK KG+ + ++ +A++ + N+GA+VV PG K+VAGI++ER + +
Sbjct: 5 DMLKDKGR----DVVTIDHKASLAEAIEVLASKNIGAVVVTSPG--KAVAGILSERDVVR 58
>gi|253682488|ref|ZP_04863285.1| nucleotidyl transferase [Clostridium botulinum D str. 1873]
gi|253562200|gb|EES91652.1| nucleotidyl transferase [Clostridium botulinum D str. 1873]
Length = 349
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 72 LWCTTDD-TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE----RGIFKAC 119
++C +DD T+ DA+KS+ ++ +GA+ + + K V G++T+ R I K C
Sbjct: 7 MYCVSDDATIKDAMKSIDKNLIGAVFIT--NKDKKVIGVVTDGNIRRAILKGC 57
>gi|255767340|ref|NP_389378.2| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168]
gi|296331070|ref|ZP_06873544.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674225|ref|YP_003865897.1| oxidoreductase [Bacillus subtilis subsp. spizizenii str. W23]
gi|321315257|ref|YP_004207544.1| putative oxidoreductase [Bacillus subtilis BSn5]
gi|402775739|ref|YP_006629683.1| oxidoreductase [Bacillus subtilis QB928]
gi|418033361|ref|ZP_12671838.1| putative oxidoreductase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|428279087|ref|YP_005560822.1| hypothetical protein BSNT_02482 [Bacillus subtilis subsp. natto
BEST195]
gi|430756023|ref|YP_007209803.1| hypothetical protein A7A1_0531 [Bacillus subtilis subsp. subtilis
str. BSP1]
gi|449094190|ref|YP_007426681.1| putative oxidoreductase [Bacillus subtilis XF-1]
gi|452914312|ref|ZP_21962939.1| CBS domain protein [Bacillus subtilis MB73/2]
gi|264664572|sp|O34682.2|YLBB_BACSU RecName: Full=Uncharacterized protein YlbB
gi|225184967|emb|CAB13368.2| putative oxidoreductase [Bacillus subtilis subsp. subtilis str.
168]
gi|291484044|dbj|BAI85119.1| hypothetical protein BSNT_02482 [Bacillus subtilis subsp. natto
BEST195]
gi|296151714|gb|EFG92589.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305412469|gb|ADM37588.1| putative oxidoreductase [Bacillus subtilis subsp. spizizenii str.
W23]
gi|320021531|gb|ADV96517.1| putative oxidoreductase [Bacillus subtilis BSn5]
gi|351469509|gb|EHA29685.1| putative oxidoreductase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|402480922|gb|AFQ57431.1| Putative oxidoreductase [Bacillus subtilis QB928]
gi|407958901|dbj|BAM52141.1| oxidoreductase [Synechocystis sp. PCC 6803]
gi|407964479|dbj|BAM57718.1| oxidoreductase [Bacillus subtilis BEST7003]
gi|430020543|gb|AGA21149.1| Hypothetical protein YlbB [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|449028105|gb|AGE63344.1| putative oxidoreductase [Bacillus subtilis XF-1]
gi|452116732|gb|EME07127.1| CBS domain protein [Bacillus subtilis MB73/2]
Length = 148
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T I D++ A +CT D VY+A M NVGA+ VV + +++ GI+T+R
Sbjct: 2 TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDR 53
Query: 114 GI 115
+
Sbjct: 54 DL 55
>gi|345850690|ref|ZP_08803682.1| cystathionine beta-synthase [Streptomyces zinciresistens K42]
gi|345637832|gb|EGX59347.1| cystathionine beta-synthase [Streptomyces zinciresistens K42]
Length = 462
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S + D+L K GA S + D+TV +A++ + ++ V + +VKP
Sbjct: 311 MADYGFLEDEGPSARVGDVLSDKEHGAIPSLVHMHPDETVGEAIEVLREYGVSQMPIVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|29830053|ref|NP_824687.1| cystathionine beta-synthase [Streptomyces avermitilis MA-4680]
gi|29607163|dbj|BAC71222.1| putative cystathionine beta-synthase [Streptomyces avermitilis
MA-4680]
Length = 464
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S ++D+L K G+ S + D+TV +A++ + ++ V + +VKP
Sbjct: 311 MADYGFLEDSGPSARVADVLSDKAGGSIPSLVHMHPDETVGEAIEVLREYGVSQMPIVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|398858953|ref|ZP_10614637.1| putative signal-transduction protein containing cAMP-binding and
CBS domain-containing protein [Pseudomonas sp. GM79]
gi|398238054|gb|EJN23791.1| putative signal-transduction protein containing cAMP-binding and
CBS domain-containing protein [Pseudomonas sp. GM79]
Length = 146
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D V DA+K M + NVGAL V++ G+ V G+I+ER
Sbjct: 24 DQMVLDALKMMAEKNVGALPVIEDGQ---VVGVISER 57
>gi|384175235|ref|YP_005556620.1| CBS domain pair sporulation protein YlbB [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
gi|349594459|gb|AEP90646.1| CBS domain pair sporulation protein YlbB [Bacillus subtilis subsp.
subtilis str. RO-NN-1]
Length = 148
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T I D++ A +CT D VY+A M NVGA+ VV + +++ GI+T+R
Sbjct: 2 TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDR 53
Query: 114 GI 115
+
Sbjct: 54 DL 55
>gi|373458680|ref|ZP_09550447.1| putative signal transduction protein with CBS domains [Caldithrix
abyssi DSM 13497]
gi|371720344|gb|EHO42115.1| putative signal transduction protein with CBS domains [Caldithrix
abyssi DSM 13497]
Length = 144
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 3/35 (8%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TV +A++ M NVGAL+VVK G+ V GII+ER
Sbjct: 23 TVLEALQKMADKNVGALLVVKDGQ---VKGIISER 54
>gi|350265803|ref|YP_004877110.1| CBS domain pair sporulation protein YlbB [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|349598690|gb|AEP86478.1| CBS domain pair sporulation protein YlbB [Bacillus subtilis subsp.
spizizenii TU-B-10]
Length = 148
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T I D++ A +CT D VY+A M NVGA+ VV + +++ GI+T+R
Sbjct: 2 TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDR 53
Query: 114 GI 115
+
Sbjct: 54 DL 55
>gi|398840530|ref|ZP_10597765.1| putative signal-transduction protein containing cAMP-binding and
CBS domain containing protein [Pseudomonas sp. GM102]
gi|398110489|gb|EJM00392.1| putative signal-transduction protein containing cAMP-binding and
CBS domain containing protein [Pseudomonas sp. GM102]
Length = 146
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D V DA+K M + NVGAL V++ G+ V G+I+ER
Sbjct: 24 DQMVLDALKMMAEKNVGALPVIEDGQ---VVGVISER 57
>gi|340787171|ref|YP_004752636.1| putative signal-transduction protein with CBS domains [Collimonas
fungivorans Ter331]
gi|340552438|gb|AEK61813.1| putative signal-transduction protein with CBS domains [Collimonas
fungivorans Ter331]
Length = 151
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T++ ILK K + + D V+DA+K M+ +VGAL+V G+ + GI+TER
Sbjct: 8 TVAQILKTK---QNQTVYTIAPDAKVFDAIKMMSDKSVGALLVTVQGK---IVGIVTER 60
>gi|398810730|ref|ZP_10569541.1| CBS domain-containing protein [Variovorax sp. CF313]
gi|398082169|gb|EJL72928.1| CBS domain-containing protein [Variovorax sp. CF313]
Length = 150
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+SDIL+ KG + T DD + +A +M + ++G+LVV++ G+ + G++T R +
Sbjct: 3 VSDILRVKG----NTLFTITPDDLLAEAANTMAEKDIGSLVVMEHGD---LVGMLTFREV 55
Query: 116 FKAC 119
A
Sbjct: 56 IVAV 59
>gi|352682080|ref|YP_004892604.1| hypothetical protein TTX_0871 [Thermoproteus tenax Kra 1]
gi|350274879|emb|CCC81525.1| conserved hypothetical protein with 2 CBS domains [Thermoproteus
tenax Kra 1]
Length = 139
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
D TV +A M + NVG LV+V+ ++ V G+I+ER I +A
Sbjct: 17 DATVEEAADLMAKENVGLLVIVRDNPKRPV-GVISERDIIRAI 58
>gi|91773709|ref|YP_566401.1| CBS domain-containing protein [Methanococcoides burtonii DSM 6242]
gi|91712724|gb|ABE52651.1| Cystathionine beta-synthase domain-containing protein
[Methanococcoides burtonii DSM 6242]
Length = 315
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
+W T+D + +A M +H VG+L ++ G+ + GIITER + +A
Sbjct: 269 VWTTSDTDLGEASSLMLKHGVGSLPIIDNGK---LCGIITERDVLRA 312
>gi|254419222|ref|ZP_05032946.1| hypothetical protein BBAL3_1532 [Brevundimonas sp. BAL3]
gi|196185399|gb|EDX80375.1| hypothetical protein BBAL3_1532 [Brevundimonas sp. BAL3]
Length = 142
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+++ILK KG + +D TV A + + VGALVV + GE SVAG+ +ER +
Sbjct: 3 VAEILKTKGN----AVFSIASDLTVAQACGELERKRVGALVV-RDGE--SVAGVFSERDV 55
Query: 116 FKA 118
KA
Sbjct: 56 VKA 58
>gi|146299410|ref|YP_001194001.1| signal-transduction protein [Flavobacterium johnsoniae UW101]
gi|146153828|gb|ABQ04682.1| putative signal-transduction protein with CBS domains
[Flavobacterium johnsoniae UW101]
Length = 141
Score = 35.4 bits (80), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ IL AKGK + TVY+A+K M N+GA++++ + K GI++ER
Sbjct: 2 TVDQILNAKGKNV----FSVRSTTTVYEALKVMGDKNIGAILIIDGTDLK---GILSER 53
>gi|416367200|ref|ZP_11682856.1| sugar-phosphate nucleotide transferase [Clostridium botulinum C
str. Stockholm]
gi|338193893|gb|EGO86497.1| sugar-phosphate nucleotide transferase [Clostridium botulinum C
str. Stockholm]
Length = 83
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 7/53 (13%)
Query: 72 LWCTTDD-TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE----RGIFKAC 119
++C +DD T+ DA+KS+ ++ +GA+ + + K V G++T+ R I K C
Sbjct: 3 MYCVSDDATIKDAMKSIDKNLIGAVFI--TNKDKKVIGVVTDGNIRRAILKGC 53
>gi|124027316|ref|YP_001012636.1| voltage-gated chloride channel protein [Hyperthermus butylicus DSM
5456]
gi|123978010|gb|ABM80291.1| Voltage-gated chloride channel protein [Hyperthermus butylicus DSM
5456]
Length = 563
Score = 35.4 bits (80), Expect = 3.9, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 24/124 (19%)
Query: 19 VLQRIRLVNPMLRPVVSSR----FESVSSARMEEH--GFEST---------TISDIL--- 60
+L++I++ + M R VV R + V E H GF T+SD+L
Sbjct: 432 LLRQIKVRDIMTRSVVVVRPDDPLKRVIELTAETHHTGFPVVVDGRVVGMITLSDVLRYR 491
Query: 61 -----KAKGKGA-DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
K K K A S + DD++ DA++ M ++ +G L VV+ E + GIIT++
Sbjct: 492 HSELGKVKVKEAMTRSVIAVLPDDSLADALRKMLRYGIGRLPVVENYESMKLIGIITKKD 551
Query: 115 IFKA 118
I +A
Sbjct: 552 IVRA 555
>gi|317129330|ref|YP_004095612.1| CBS domain containing protein [Bacillus cellulosilyticus DSM 2522]
gi|315474278|gb|ADU30881.1| CBS domain containing protein [Bacillus cellulosilyticus DSM 2522]
Length = 142
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
G C DD VY+A M Q +VGA+ + E + + G+IT+R I
Sbjct: 10 GDVEICNPDDNVYEAALKMKQFDVGAIPIC---EGRQLLGMITDRDI 53
>gi|221309365|ref|ZP_03591212.1| hypothetical protein Bsubs1_08271 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313692|ref|ZP_03595497.1| hypothetical protein BsubsN3_08207 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318614|ref|ZP_03599908.1| hypothetical protein BsubsJ_08141 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322888|ref|ZP_03604182.1| hypothetical protein BsubsS_08252 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|2339998|emb|CAB11348.1| YlbB protein [Bacillus subtilis subsp. subtilis str. 168]
Length = 150
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV-KPGEQKSVAGIITE 112
T I D++ A +CT D VY+A M NVGA+ VV + GE ++ GI+T+
Sbjct: 2 TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPVVDEDGE--TLVGIVTD 52
Query: 113 RGI 115
R +
Sbjct: 53 RDL 55
>gi|379004380|ref|YP_005260052.1| putative signal transduction protein [Pyrobaculum oguniense TE7]
gi|375159833|gb|AFA39445.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Pyrobaculum oguniense TE7]
Length = 129
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T D T+ +AV+ + H+VG LVVV + G+++ER + +A
Sbjct: 15 TPDKTLEEAVELLANHDVGLLVVVDRDNPRRPIGVLSERDVVRA 58
>gi|423096128|ref|ZP_17083924.1| CBS domain protein [Pseudomonas fluorescens Q2-87]
gi|397887608|gb|EJL04091.1| CBS domain protein [Pseudomonas fluorescens Q2-87]
Length = 129
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ DD V A+ M + NVGAL+VVK E V GII+ER
Sbjct: 5 SPDDMVLQALMRMAEKNVGALLVVKNDE---VLGIISER 40
>gi|296108946|ref|YP_003615895.1| signal transduction protein with CBS domains [methanocaldococcus
infernus ME]
gi|295433760|gb|ADG12931.1| putative signal transduction protein with CBS domains
[Methanocaldococcus infernus ME]
Length = 293
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
D +YDA+K M ++NVG L++V + V GIIT I K
Sbjct: 246 DVKIYDALKIMNKYNVGRLIIV---DNNKVFGIITRTDILKTI 285
>gi|386001249|ref|YP_005919548.1| Putative signal-transduction protein with CBS domains [Methanosaeta
harundinacea 6Ac]
gi|357209305|gb|AET63925.1| Putative signal-transduction protein with CBS domains [Methanosaeta
harundinacea 6Ac]
Length = 139
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+ TV++A++ M + G+++VV+ G K V GI+T G+F+
Sbjct: 11 ETTVFEAIQMMVREGKGSVLVVEGGLLKEVVGIVTTSGLFR 51
>gi|449018296|dbj|BAM81698.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 260
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 8/68 (11%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA----GI 109
T + ++++ +G+ +DT+ +A+K M HN+G L+VV+ +Q A GI
Sbjct: 97 TPVGELIRGRGERV----YQIAANDTMQNALKKMFIHNIGCLLVVEQPQQNDEACKPVGI 152
Query: 110 ITERGIFK 117
I+ER + +
Sbjct: 153 ISERDLTR 160
>gi|305663917|ref|YP_003860205.1| putative signal transduction protein with CBS domains [Ignisphaera
aggregans DSM 17230]
gi|304378486|gb|ADM28325.1| putative signal transduction protein with CBS domains [Ignisphaera
aggregans DSM 17230]
Length = 134
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
TVYDA+K M +HN+ +L+V E V G+IT + I
Sbjct: 20 TVYDAIKLMERHNIASLIVT--DENDVVLGVITAKDIV 55
>gi|160932207|ref|ZP_02079598.1| hypothetical protein CLOLEP_01042 [Clostridium leptum DSM 753]
gi|156868809|gb|EDO62181.1| CBS domain protein [Clostridium leptum DSM 753]
Length = 149
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T++D++ K + DT+ +A + M +H+VG L VV GE K G++T+R
Sbjct: 4 TVNDVMSKK-------VVAVLPGDTLEEAARLMKEHDVGVLPVVSGGELK---GLVTDRD 53
Query: 115 IFKAC 119
I C
Sbjct: 54 IVLQC 58
>gi|320547323|ref|ZP_08041614.1| CBS domain protein [Streptococcus equinus ATCC 9812]
gi|320448021|gb|EFW88773.1| CBS domain protein [Streptococcus equinus ATCC 9812]
Length = 221
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 82 DAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
DAV +M +H VG L VV+ G V G+ITE+ +FKA
Sbjct: 98 DAVYAMMKHRVGILPVVEHGR---VHGVITEKDVFKA 131
>gi|456385186|gb|EMF50754.1| cystathionine beta-synthase [Streptomyces bottropensis ATCC 25435]
Length = 462
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S ++D+L K GA S + D+TV A++ + ++ V + +VKP
Sbjct: 311 MADYGFLEDEGPSARVADVLNDKVHGAIPSLVHMHPDETVGQAIEVLREYGVSQMPIVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|312960091|ref|ZP_07774603.1| CBS domain protein [Pseudomonas fluorescens WH6]
gi|311285585|gb|EFQ64154.1| CBS domain protein [Pseudomonas fluorescens WH6]
Length = 146
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 55 TISDILKAKG-KGADGSWL-WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
T++ +LKAK K D + W D TV++A+ M++ NVGAL VVK V GII+E
Sbjct: 3 TVAQLLKAKDHKNQDVHTIKW---DHTVFEALVRMSEKNVGALPVVKGD---VVVGIISE 56
Query: 113 R 113
R
Sbjct: 57 R 57
>gi|443632839|ref|ZP_21117018.1| putative oxidoreductase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443347662|gb|ELS61720.1| putative oxidoreductase [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 148
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T I D++ A +CT D VY+A M NVGA+ +V + +++ GI+T+R
Sbjct: 2 TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPIVDE-DGETLVGIVTDR 53
Query: 114 GI 115
+
Sbjct: 54 DL 55
>gi|302337838|ref|YP_003803044.1| signal transduction protein with CBS domains [Spirochaeta
smaragdinae DSM 11293]
gi|301635023|gb|ADK80450.1| putative signal transduction protein with CBS domains [Spirochaeta
smaragdinae DSM 11293]
Length = 147
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 55 TISDILKAKGKGADGSWLWCT-TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TI D+L KG AD +W + TV+ A+ M++ NVGA+VV+ +Q+ + GI +ER
Sbjct: 3 TIKDLLAQKG--AD---IWSVRPETTVFQALSLMSEKNVGAVVVL--DDQQKMIGIFSER 55
>gi|182411839|ref|YP_001816905.1| signal-transduction protein [Opitutus terrae PB90-1]
gi|177839053|gb|ACB73305.1| putative signal-transduction protein with CBS domains [Opitutus
terrae PB90-1]
Length = 147
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
+T IS +L KG ++ TV DAV M +H +G++VV+ E S GI TE
Sbjct: 2 NTPISALLDRKGSVV----FSVPSNVTVCDAVNEMNRHRIGSIVVL---ENSSPIGIFTE 54
Query: 113 RGIFK 117
R + +
Sbjct: 55 RDVLR 59
>gi|398347881|ref|ZP_10532584.1| signal transduction protein [Leptospira broomii str. 5399]
Length = 146
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ +IL+ K D L TV++A++ MT++++G+++V+ G+ +AGI TER +
Sbjct: 3 VKEILEKK----DRKILSVEPQTTVWEAIRFMTKYDIGSVIVLNAGK---LAGIFTERDL 55
Query: 116 F 116
Sbjct: 56 L 56
>gi|398817955|ref|ZP_10576554.1| CBS domain-containing protein [Brevibacillus sp. BC25]
gi|398028753|gb|EJL22256.1| CBS domain-containing protein [Brevibacillus sp. BC25]
Length = 214
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGE----QKSVAGIITERGIFKA 118
+ C D+T+Y A K + + +L VV+PGE Q + G +T+ I KA
Sbjct: 154 ITCAPDETLYAAAKKLIDFQIDSLPVVRPGEEDPKQMELLGRVTKTTIAKA 204
>gi|15790611|ref|NP_280435.1| hypothetical protein VNG1663C [Halobacterium sp. NRC-1]
gi|169236349|ref|YP_001689549.1| hypothetical protein [Halobacterium salinarum R1]
gi|10581133|gb|AAG19915.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
gi|167727415|emb|CAP14203.1| CBS domain protein [Halobacterium salinarum R1]
Length = 380
Score = 35.4 bits (80), Expect = 4.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
DD+V DAV M H+ ++V ++++V GI+T+ + +A
Sbjct: 216 DDSVRDAVDDMLAHDYSGVIVTPDDDERAVGGILTKTDVLRA 257
>gi|62290164|ref|YP_221957.1| hypothetical protein BruAb1_1258 [Brucella abortus bv. 1 str.
9-941]
gi|82700086|ref|YP_414660.1| hypothetical protein BAB1_1274 [Brucella melitensis biovar Abortus
2308]
gi|148559815|ref|YP_001259171.1| CBS domain-containing protein [Brucella ovis ATCC 25840]
gi|189024399|ref|YP_001935167.1| hypothetical protein BAbS19_I11880 [Brucella abortus S19]
gi|256263764|ref|ZP_05466296.1| CBS domain-containing protein [Brucella melitensis bv. 2 str. 63/9]
gi|260546708|ref|ZP_05822447.1| CBS domain-containing protein [Brucella abortus NCTC 8038]
gi|260754992|ref|ZP_05867340.1| CBS domain-containing protein [Brucella abortus bv. 6 str. 870]
gi|260758208|ref|ZP_05870556.1| CBS domain-containing protein [Brucella abortus bv. 4 str. 292]
gi|260762035|ref|ZP_05874378.1| CBS domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260884002|ref|ZP_05895616.1| CBS domain-containing protein [Brucella abortus bv. 9 str. C68]
gi|261214246|ref|ZP_05928527.1| CBS domain-containing protein [Brucella abortus bv. 3 str. Tulya]
gi|261219598|ref|ZP_05933879.1| CBS domain-containing protein [Brucella ceti M13/05/1]
gi|261222410|ref|ZP_05936691.1| CBS domain-containing protein [Brucella ceti B1/94]
gi|261314029|ref|ZP_05953226.1| CBS domain-containing protein [Brucella pinnipedialis M163/99/10]
gi|261317884|ref|ZP_05957081.1| CBS domain-containing protein [Brucella pinnipedialis B2/94]
gi|261322093|ref|ZP_05961290.1| CBS domain-containing protein [Brucella ceti M644/93/1]
gi|261325335|ref|ZP_05964532.1| CBS domain-containing protein [Brucella neotomae 5K33]
gi|261752559|ref|ZP_05996268.1| CBS domain-containing protein [Brucella suis bv. 5 str. 513]
gi|261758440|ref|ZP_06002149.1| CBS domain-containing protein [Brucella sp. F5/99]
gi|265984308|ref|ZP_06097043.1| CBS domain-containing protein [Brucella sp. 83/13]
gi|265988912|ref|ZP_06101469.1| CBS domain-containing protein [Brucella pinnipedialis M292/94/1]
gi|265995163|ref|ZP_06107720.1| CBS domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|265998377|ref|ZP_06110934.1| CBS domain-containing protein [Brucella ceti M490/95/1]
gi|294852589|ref|ZP_06793262.1| inosine-5'-monophosphate dehydrogenase [Brucella sp. NVSL 07-0026]
gi|306839078|ref|ZP_07471895.1| CBS domain-containing protein [Brucella sp. NF 2653]
gi|306840280|ref|ZP_07473054.1| CBS domain-containing protein [Brucella sp. BO2]
gi|306844158|ref|ZP_07476751.1| CBS domain-containing protein [Brucella inopinata BO1]
gi|376273017|ref|YP_005151595.1| hypothetical protein BAA13334_I01978 [Brucella abortus A13334]
gi|384211622|ref|YP_005600704.1| hypothetical protein [Brucella melitensis M5-90]
gi|384408728|ref|YP_005597349.1| CBS domain protein [Brucella melitensis M28]
gi|384445304|ref|YP_005604023.1| hypothetical protein [Brucella melitensis NI]
gi|423166654|ref|ZP_17153357.1| hypothetical protein M17_00344 [Brucella abortus bv. 1 str. NI435a]
gi|423170972|ref|ZP_17157647.1| hypothetical protein M19_01505 [Brucella abortus bv. 1 str. NI474]
gi|423172946|ref|ZP_17159617.1| hypothetical protein M1A_00344 [Brucella abortus bv. 1 str. NI486]
gi|423178361|ref|ZP_17165005.1| hypothetical protein M1E_02601 [Brucella abortus bv. 1 str. NI488]
gi|423180402|ref|ZP_17167043.1| hypothetical protein M1G_01502 [Brucella abortus bv. 1 str. NI010]
gi|423183534|ref|ZP_17170171.1| hypothetical protein M1I_01503 [Brucella abortus bv. 1 str. NI016]
gi|423185526|ref|ZP_17172140.1| hypothetical protein M1K_00344 [Brucella abortus bv. 1 str. NI021]
gi|423188661|ref|ZP_17175271.1| hypothetical protein M1M_00343 [Brucella abortus bv. 1 str. NI259]
gi|62196296|gb|AAX74596.1| CBS domain protein [Brucella abortus bv. 1 str. 9-941]
gi|82616187|emb|CAJ11230.1| CBS domain [Brucella melitensis biovar Abortus 2308]
gi|148371072|gb|ABQ61051.1| CBS domain protein [Brucella ovis ATCC 25840]
gi|189019971|gb|ACD72693.1| CBS domain protein [Brucella abortus S19]
gi|260095758|gb|EEW79635.1| CBS domain-containing protein [Brucella abortus NCTC 8038]
gi|260668526|gb|EEX55466.1| CBS domain-containing protein [Brucella abortus bv. 4 str. 292]
gi|260672467|gb|EEX59288.1| CBS domain-containing protein [Brucella abortus bv. 2 str. 86/8/59]
gi|260675100|gb|EEX61921.1| CBS domain-containing protein [Brucella abortus bv. 6 str. 870]
gi|260873530|gb|EEX80599.1| CBS domain-containing protein [Brucella abortus bv. 9 str. C68]
gi|260915853|gb|EEX82714.1| CBS domain-containing protein [Brucella abortus bv. 3 str. Tulya]
gi|260920994|gb|EEX87647.1| CBS domain-containing protein [Brucella ceti B1/94]
gi|260924687|gb|EEX91255.1| CBS domain-containing protein [Brucella ceti M13/05/1]
gi|261294783|gb|EEX98279.1| CBS domain-containing protein [Brucella ceti M644/93/1]
gi|261297107|gb|EEY00604.1| CBS domain-containing protein [Brucella pinnipedialis B2/94]
gi|261301315|gb|EEY04812.1| CBS domain-containing protein [Brucella neotomae 5K33]
gi|261303055|gb|EEY06552.1| CBS domain-containing protein [Brucella pinnipedialis M163/99/10]
gi|261738424|gb|EEY26420.1| CBS domain-containing protein [Brucella sp. F5/99]
gi|261742312|gb|EEY30238.1| CBS domain-containing protein [Brucella suis bv. 5 str. 513]
gi|262552845|gb|EEZ08835.1| CBS domain-containing protein [Brucella ceti M490/95/1]
gi|262766276|gb|EEZ12065.1| CBS domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|263093864|gb|EEZ17826.1| CBS domain-containing protein [Brucella melitensis bv. 2 str. 63/9]
gi|264661109|gb|EEZ31370.1| CBS domain-containing protein [Brucella pinnipedialis M292/94/1]
gi|264662900|gb|EEZ33161.1| CBS domain-containing protein [Brucella sp. 83/13]
gi|294821178|gb|EFG38177.1| inosine-5'-monophosphate dehydrogenase [Brucella sp. NVSL 07-0026]
gi|306275433|gb|EFM57170.1| CBS domain-containing protein [Brucella inopinata BO1]
gi|306289807|gb|EFM60989.1| CBS domain-containing protein [Brucella sp. BO2]
gi|306405625|gb|EFM61887.1| CBS domain-containing protein [Brucella sp. NF 2653]
gi|326409275|gb|ADZ66340.1| CBS domain protein [Brucella melitensis M28]
gi|326538985|gb|ADZ87200.1| CBS domain containing protein [Brucella melitensis M5-90]
gi|349743295|gb|AEQ08838.1| CBS domain protein [Brucella melitensis NI]
gi|363400623|gb|AEW17593.1| CBS domain containing protein [Brucella abortus A13334]
gi|374538306|gb|EHR09814.1| hypothetical protein M19_01505 [Brucella abortus bv. 1 str. NI474]
gi|374544138|gb|EHR15616.1| hypothetical protein M17_00344 [Brucella abortus bv. 1 str. NI435a]
gi|374544465|gb|EHR15942.1| hypothetical protein M1A_00344 [Brucella abortus bv. 1 str. NI486]
gi|374545142|gb|EHR16605.1| hypothetical protein M1E_02601 [Brucella abortus bv. 1 str. NI488]
gi|374547933|gb|EHR19385.1| hypothetical protein M1G_01502 [Brucella abortus bv. 1 str. NI010]
gi|374548362|gb|EHR19810.1| hypothetical protein M1I_01503 [Brucella abortus bv. 1 str. NI016]
gi|374559223|gb|EHR30612.1| hypothetical protein M1M_00343 [Brucella abortus bv. 1 str. NI259]
gi|374560236|gb|EHR31619.1| hypothetical protein M1K_00344 [Brucella abortus bv. 1 str. NI021]
Length = 143
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T+ IL+ KG+ + + DT+ AV + +H +GALVV E + GI++ER
Sbjct: 2 TVRSILETKGR----DVVVIASADTLSQAVAMLNKHKIGALVVC--DEAGHIEGILSERD 55
Query: 115 IFKA 118
+ +A
Sbjct: 56 VVRA 59
>gi|338731407|ref|YP_004660799.1| CBS domain-containing membrane protein [Thermotoga thermarum DSM
5069]
gi|335365758|gb|AEH51703.1| CBS domain containing membrane protein [Thermotoga thermarum DSM
5069]
Length = 214
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 81 YDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
+DA+ M Q NV L VVK E V GIITE+ +FKA
Sbjct: 21 FDAMDLMRQKNVRRLPVVK--ENGEVVGIITEKDLFKA 56
>gi|290959849|ref|YP_003491031.1| cystathionine beta-synthase [Streptomyces scabiei 87.22]
gi|260649375|emb|CBG72490.1| putative cystathionine beta-synthase [Streptomyces scabiei 87.22]
Length = 462
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S ++D+L K GA S + D+TV A++ + ++ V + +VKP
Sbjct: 311 MADYGFLEDEGPSARVADVLNDKVHGAIPSLVHMHPDETVGQAIEVLREYGVSQMPIVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|317126018|ref|YP_004100130.1| signal transduction protein with CBS domains [Intrasporangium
calvum DSM 43043]
gi|315590106|gb|ADU49403.1| putative signal transduction protein with CBS domains
[Intrasporangium calvum DSM 43043]
Length = 143
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
ISD+L+ KG + D+TV + + +H +GA VV G V GI++ER +
Sbjct: 3 ISDVLRHKGD----EVIVIAPDETVSTLLARLAEHGIGACVVSADGTH--VDGIVSERDV 56
Query: 116 FKACHN 121
+ H
Sbjct: 57 VRHLHT 62
>gi|146303065|ref|YP_001190381.1| signal-transduction protein [Metallosphaera sedula DSM 5348]
gi|145701315|gb|ABP94457.1| putative signal-transduction protein with CBS domains
[Metallosphaera sedula DSM 5348]
Length = 141
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 66 GADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
G + DDTVY AVK M + N+ L+VV ++ G+I+ R I + H
Sbjct: 72 GTMKDLVTVREDDTVYTAVKKMAERNLRHLIVVD--RDGNLKGVISVRDIIRESH 124
>gi|398905812|ref|ZP_10653134.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Pseudomonas sp. GM50]
gi|398174118|gb|EJM61925.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Pseudomonas sp. GM50]
Length = 146
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D V DA+K M + NVGAL V++ G+ V G+I+ER
Sbjct: 24 DRMVLDALKMMAEKNVGALPVIEDGQ---VVGVISER 57
>gi|374327173|ref|YP_005085373.1| putative signal-transduction protein with CBS domains [Pyrobaculum
sp. 1860]
gi|356642442|gb|AET33121.1| putative signal-transduction protein with CBS domains [Pyrobaculum
sp. 1860]
Length = 153
Score = 35.0 bits (79), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
G+ A + T D+T+ AV+ + H+VG LVVV G+++ER + +A
Sbjct: 20 GEIASRPPIVITPDETLDKAVELLATHDVGILVVVDRNNPNKPVGVLSERDVVRAL 75
>gi|418056360|ref|ZP_12694413.1| putative signal transduction protein with CBS domains
[Hyphomicrobium denitrificans 1NES1]
gi|353209579|gb|EHB74982.1| putative signal transduction protein with CBS domains
[Hyphomicrobium denitrificans 1NES1]
Length = 143
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I ILK+K +G + +D++ + ++ +GA+V+V G+ VAGII+ER I
Sbjct: 3 IGQILKSKARGV----MTACPEDSIQEIALRLSSRKIGAIVIV--GDSGKVAGIISERDI 56
Query: 116 FK 117
+
Sbjct: 57 IR 58
>gi|374323340|ref|YP_005076469.1| signal transduction protein with cbs domains [Paenibacillus terrae
HPL-003]
gi|357202349|gb|AET60246.1| signal transduction protein with cbs domains [Paenibacillus terrae
HPL-003]
Length = 238
Score = 35.0 bits (79), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
D T YDAV + Q N G L+V GE + + GI+T + + K
Sbjct: 114 DATAYDAVLMLFQQNTGTLMVT--GEDQELIGIVTRKDLLK 152
>gi|381206976|ref|ZP_09914047.1| signal-transduction protein with cbs domains [SAR324 cluster
bacterium JCVI-SC AAA005]
Length = 143
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
++ +L KG + T D +V+DA+K M + N+GA++V+ E + + GI +ER
Sbjct: 3 SVRQMLSEKGSAV----VSITPDTSVFDALKVMNEKNIGAVLVM---EDEELVGIFSER 54
>gi|56479475|ref|YP_161064.1| hypothetical protein ebA7121 [Aromatoleum aromaticum EbN1]
gi|56315518|emb|CAI10163.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 148
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
+ T+ IL+ KG GA + +V+DA+ M +H++GA++V E + GI TE
Sbjct: 3 TMTVRQILETKGAGAHA----VSPGVSVFDALAVMAKHDIGAVLVT---ENDHLTGIFTE 55
Query: 113 R 113
R
Sbjct: 56 R 56
>gi|408531407|emb|CCK29581.1| putative cystathionine beta-synthase [Streptomyces davawensis JCM
4913]
Length = 462
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S ++D+L K GA S + D+TV A+ + ++ V + +VKP
Sbjct: 311 MADYGFLEDEGPSARVADVLNDKEHGAIPSLVHMHPDETVGQAIDVLREYGVSQMPIVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|429201342|ref|ZP_19192810.1| cystathionine beta-synthase [Streptomyces ipomoeae 91-03]
gi|428663109|gb|EKX62497.1| cystathionine beta-synthase [Streptomyces ipomoeae 91-03]
Length = 464
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S + D+L K GA S + D+TV A++ + ++ V + +VKP
Sbjct: 311 MADYGFLEDEGPSARVGDVLDHKEHGAMPSLVHMHPDETVGQAIEVLREYGVSQMPIVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|407641205|ref|YP_006804964.1| hypothetical protein O3I_000135 [Nocardia brasiliensis ATCC 700358]
gi|407304089|gb|AFT97989.1| hypothetical protein O3I_000135 [Nocardia brasiliensis ATCC 700358]
Length = 139
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT DI+K + W D+TV A + M + VG+LV+ ++ + GIIT+R
Sbjct: 2 TTARDIMKPGAQ-------WIAKDETVGKAARVMAELGVGSLVIADDNDR--MCGIITDR 52
Query: 114 GIFKAC 119
I C
Sbjct: 53 DIVVKC 58
>gi|260566223|ref|ZP_05836693.1| CBS domain-containing protein [Brucella suis bv. 4 str. 40]
gi|261755217|ref|ZP_05998926.1| CBS domain-containing protein [Brucella suis bv. 3 str. 686]
gi|376276134|ref|YP_005116573.1| hypothetical protein BCA52141_I3178 [Brucella canis HSK A52141]
gi|260155741|gb|EEW90821.1| CBS domain-containing protein [Brucella suis bv. 4 str. 40]
gi|261744970|gb|EEY32896.1| CBS domain-containing protein [Brucella suis bv. 3 str. 686]
gi|363404701|gb|AEW14996.1| CBS domain-containing protein [Brucella canis HSK A52141]
Length = 121
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T+ IL+ KG+ + + DT+ AV + +H +GALVV E + GI++ER
Sbjct: 2 TVRSILETKGRDV----VVIASADTLSQAVAMLNKHKIGALVVC--DEAGHIEGILSERD 55
Query: 115 IFKA 118
+ +A
Sbjct: 56 VVRA 59
>gi|163843518|ref|YP_001627922.1| hypothetical protein BSUIS_A1304 [Brucella suis ATCC 23445]
gi|225627721|ref|ZP_03785758.1| CBS domain-containing protein [Brucella ceti str. Cudo]
gi|225852750|ref|YP_002732983.1| hypothetical protein BMEA_A1301 [Brucella melitensis ATCC 23457]
gi|237815671|ref|ZP_04594668.1| CBS domain-containing protein [Brucella abortus str. 2308 A]
gi|256369677|ref|YP_003107187.1| hypothetical protein BMI_I1267 [Brucella microti CCM 4915]
gi|297248558|ref|ZP_06932276.1| CBS domain-containing protein [Brucella abortus bv. 5 str. B3196]
gi|340790871|ref|YP_004756336.1| CBS domain containing protein [Brucella pinnipedialis B2/94]
gi|163674241|gb|ABY38352.1| CBS domain containing protein [Brucella suis ATCC 23445]
gi|225617726|gb|EEH14771.1| CBS domain-containing protein [Brucella ceti str. Cudo]
gi|225641115|gb|ACO01029.1| CBS domain containing protein [Brucella melitensis ATCC 23457]
gi|237788969|gb|EEP63180.1| CBS domain-containing protein [Brucella abortus str. 2308 A]
gi|255999839|gb|ACU48238.1| CBS domain containing protein [Brucella microti CCM 4915]
gi|297175727|gb|EFH35074.1| CBS domain-containing protein [Brucella abortus bv. 5 str. B3196]
gi|340559330|gb|AEK54568.1| CBS domain containing protein [Brucella pinnipedialis B2/94]
Length = 157
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
T+ IL+ KG+ + + DT+ AV + +H +GALVV E + GI++ER
Sbjct: 16 TVRSILETKGRDV----VVIASADTLSQAVAMLNKHKIGALVVCD--EAGHIEGILSERD 69
Query: 115 IFKA 118
+ +A
Sbjct: 70 VVRA 73
>gi|170780583|ref|YP_001708915.1| cystathionine beta-synthase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169155151|emb|CAQ00251.1| putative cystathionine beta-synthase [Clavibacter michiganensis
subsp. sepedonicus]
Length = 454
Score = 35.0 bits (79), Expect = 5.6, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 46 MEEHGFEST----TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVK-- 99
M+ +GF T++D++ AK G+ + +DT+ DA++ MT+++V L V+
Sbjct: 311 MQSYGFARVNGQRTVADVMSAK-TGSLPDLVHAHPNDTIRDAIRIMTEYDVSQLPVLSAE 369
Query: 100 -PGEQKSVAGIITERGIFK 117
P VAG + ER + +
Sbjct: 370 PPVVMGEVAGAVDERSLLE 388
>gi|393777870|ref|ZP_10366160.1| cbs domain-containing protein [Ralstonia sp. PBA]
gi|392715169|gb|EIZ02753.1| cbs domain-containing protein [Ralstonia sp. PBA]
Length = 164
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ 103
G LWCT DD + DA + M +H V + VV Q
Sbjct: 90 GDAMSSDPLWCTEDDAIEDACRKMAEHQVRRIPVVDRDHQ 129
>gi|196231756|ref|ZP_03130613.1| putative signal-transduction protein with CBS domains
[Chthoniobacter flavus Ellin428]
gi|196224228|gb|EDY18741.1| putative signal-transduction protein with CBS domains
[Chthoniobacter flavus Ellin428]
Length = 146
Score = 35.0 bits (79), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D TVY+A++ M + N+GAL VV G + GI+TER
Sbjct: 24 DATVYEAIELMAEKNIGALPVVDRGR---LLGILTER 57
>gi|304315354|ref|YP_003850501.1| CBS domain-containing protein [Methanothermobacter marburgensis
str. Marburg]
gi|302588813|gb|ADL59188.1| CBS domain-containing protein [Methanothermobacter marburgensis
str. Marburg]
Length = 313
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+ TT D++ DAV M +++VGAL VV ++ +AGI++ER
Sbjct: 120 IHITTRDSISDAVTMMLENSVGALPVVD--DEGRIAGIVSER 159
>gi|381209782|ref|ZP_09916853.1| hypothetical protein LGrbi_07651 [Lentibacillus sp. Grbi]
Length = 142
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
C +DT+Y+A M NVG + V E K + G+IT+R +
Sbjct: 15 CRKEDTLYEAAAKMRDRNVGVIPVC--SENKELMGVITDRDLV 55
>gi|148272051|ref|YP_001221612.1| putative cystathionine beta-synthase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147829981|emb|CAN00909.1| putative cystathionine beta-synthase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 454
Score = 35.0 bits (79), Expect = 6.0, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 46 MEEHGFEST----TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVK-- 99
M+ +GF T++D++ AK G+ + +DT+ DA++ MT+++V L V+
Sbjct: 311 MQSYGFARVNGQRTVADVMSAK-TGSLPDLVHAHPNDTIRDAIRIMTEYDVSQLPVLTAE 369
Query: 100 -PGEQKSVAGIITERGIFK 117
P VAG + ER + +
Sbjct: 370 PPVVMGEVAGAVDERSLLE 388
>gi|397688746|ref|YP_006526065.1| hypothetical protein PSJM300_18270 [Pseudomonas stutzeri DSM 10701]
gi|395810302|gb|AFN79707.1| hypothetical protein PSJM300_18270 [Pseudomonas stutzeri DSM 10701]
Length = 144
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
+++ TV + +++M +HNVGAL VV GE + GI++ER
Sbjct: 20 SSEATVLEFLQAMAEHNVGALPVVDDGE---LVGIVSER 55
>gi|448545637|ref|ZP_21626136.1| hypothetical protein C460_15480 [Haloferax sp. ATCC BAA-646]
gi|448547838|ref|ZP_21627224.1| hypothetical protein C459_02885 [Haloferax sp. ATCC BAA-645]
gi|448556743|ref|ZP_21632337.1| hypothetical protein C458_10795 [Haloferax sp. ATCC BAA-644]
gi|445703963|gb|ELZ55884.1| hypothetical protein C460_15480 [Haloferax sp. ATCC BAA-646]
gi|445715649|gb|ELZ67404.1| hypothetical protein C459_02885 [Haloferax sp. ATCC BAA-645]
gi|445716092|gb|ELZ67843.1| hypothetical protein C458_10795 [Haloferax sp. ATCC BAA-644]
Length = 380
Score = 35.0 bits (79), Expect = 6.1, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T +++V DAV M +H++ LVV + +V G++T+ + +A
Sbjct: 214 TPEESVRDAVARMLEHDIAGLVVTPADDDGAVLGVVTKTDVLRA 257
>gi|452976056|gb|EME75872.1| CBS domain-containing protein YhcV [Bacillus sonorensis L12]
Length = 141
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+++ TV +A + M+QHNVGA+ VV G K G+IT+R I
Sbjct: 15 VSSNQTVQEAAELMSQHNVGAIPVVDQGVLK---GMITDRDI 53
>gi|452965016|gb|EME70046.1| CBS domain-containing protein [Magnetospirillum sp. SO-1]
Length = 146
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 59 ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
ILK+K +GA + D +V DA + + H +GA++V+ G++ VAGI++ER I +
Sbjct: 6 ILKSKARGA--GIISVPPDASVGDAARLLATHKIGAVLVMN-GDR--VAGILSERDIVR 59
>gi|335437625|ref|ZP_08560397.1| CBS domain containing membrane protein [Halorhabdus tiamatea
SARL4B]
gi|334895313|gb|EGM33487.1| CBS domain containing membrane protein [Halorhabdus tiamatea
SARL4B]
Length = 380
Score = 35.0 bits (79), Expect = 6.2, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T D++V DAV+ M +++ LVV + VAGIIT+ + +A
Sbjct: 214 TIDESVEDAVRRMLENDYAGLVVTPEHDDSLVAGIITKTDVLRA 257
>gi|383757438|ref|YP_005436423.1| hypothetical protein RGE_15830 [Rubrivivax gelatinosus IL144]
gi|381378107|dbj|BAL94924.1| hypothetical protein RGE_15830 [Rubrivivax gelatinosus IL144]
Length = 153
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
++DIL+ KG + + D + +A+KSM++ +VG+LVV++ G+ + G++T R +
Sbjct: 3 VTDILRVKG----NTTYTVSPDQLLAEAMKSMSEFDVGSLVVMEHGD---LVGMLTFREV 55
Query: 116 FKA 118
A
Sbjct: 56 ISA 58
>gi|326381571|ref|ZP_08203265.1| putative CBS domain-containing signal transduction protein
[Gordonia neofelifaecis NRRL B-59395]
gi|326199818|gb|EGD56998.1| putative CBS domain-containing signal transduction protein
[Gordonia neofelifaecis NRRL B-59395]
Length = 142
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
IS IL KG G + TV + ++ + N+GA+VV+ G+ ++AGI++ER I
Sbjct: 3 ISQILGKKGSGV----ITVRAGSTVRSLLATLDEWNIGAVVVI--GDGGTLAGIVSERDI 56
Query: 116 FKACHN 121
+ H+
Sbjct: 57 VRRLHS 62
>gi|18313671|ref|NP_560338.1| hypothetical protein PAE2898 [Pyrobaculum aerophilum str. IM2]
gi|18161221|gb|AAL64520.1| conserved protein with 2 CBS domains [Pyrobaculum aerophilum str.
IM2]
Length = 139
Score = 34.7 bits (78), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
G+ A + T D TV +A M ++ VG LV+V+ K G+I+ER I +
Sbjct: 4 GEIAKKPPITITPDKTVEEAAAIMAENRVGLLVIVERENPKKPIGVISERDIIR 57
>gi|156937882|ref|YP_001435678.1| signal-transduction protein [Ignicoccus hospitalis KIN4/I]
gi|156566866|gb|ABU82271.1| putative signal-transduction protein with CBS domains [Ignicoccus
hospitalis KIN4/I]
Length = 143
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
++T+ +A K M VG+LVVV E+ V GIITER + +A
Sbjct: 20 NNTLREAAKEMMDKGVGSLVVV--DEKGDVVGIITERDVVRAV 60
>gi|257053669|ref|YP_003131502.1| CBS domain containing membrane protein [Halorhabdus utahensis DSM
12940]
gi|256692432|gb|ACV12769.1| CBS domain containing membrane protein [Halorhabdus utahensis DSM
12940]
Length = 384
Score = 34.7 bits (78), Expect = 6.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T D++V DAV+ M +++ LVV + VAGIIT+ + +A
Sbjct: 218 TIDESVEDAVRRMLENDYAGLVVTPERDDSLVAGIITKTDVLRA 261
>gi|163850643|ref|YP_001638686.1| hypothetical protein Mext_1213 [Methylobacterium extorquens PA1]
gi|218529366|ref|YP_002420182.1| signal transduction protein with CBS domains [Methylobacterium
extorquens CM4]
gi|163662248|gb|ABY29615.1| CBS domain containing protein [Methylobacterium extorquens PA1]
gi|218521669|gb|ACK82254.1| putative signal transduction protein with CBS domains
[Methylobacterium extorquens CM4]
Length = 146
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
D +V +A + + + GALVVV+ +V G++T+R IF+A
Sbjct: 20 DRSVAEAAQLLAEPGTGALVVVEGDADATVTGLLTQRDIFRA 61
>gi|291439202|ref|ZP_06578592.1| cystathionine beta-synthase [Streptomyces ghanaensis ATCC 14672]
gi|291342097|gb|EFE69053.1| cystathionine beta-synthase [Streptomyces ghanaensis ATCC 14672]
Length = 462
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S + D+L+ K G+ S + D+TV A++ + ++ V + VVKP
Sbjct: 311 MADYGFLDNEGPSARVGDVLEDKEGGSIPSLVHMHPDETVGQAIEVLREYGVSQMPVVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|171060349|ref|YP_001792698.1| signal-transduction protein [Leptothrix cholodnii SP-6]
gi|170777794|gb|ACB35933.1| putative signal-transduction protein with CBS domains [Leptothrix
cholodnii SP-6]
Length = 150
Score = 34.7 bits (78), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 83 AVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
A + M +H+VGALVVV EQ GI+T+R +
Sbjct: 25 AAQLMRKHHVGALVVVDAAEQTRPVGIVTDRDL 57
>gi|427430313|ref|ZP_18920167.1| CBS domain containing membrane protein [Caenispirillum salinarum
AK4]
gi|425878773|gb|EKV27484.1| CBS domain containing membrane protein [Caenispirillum salinarum
AK4]
Length = 148
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
LWC DD V A KSM +H + + V+ K + G++T + KA
Sbjct: 81 LWCFDDDDVEKAAKSMAEHQIRRMPVI--NHDKRMCGVVTVADLAKA 125
>gi|15922679|ref|NP_378348.1| hypothetical protein ST2348 [Sulfolobus tokodaii str. 7]
gi|15623469|dbj|BAB67457.1| CBS domain protein [Sulfolobus tokodaii str. 7]
Length = 133
Score = 34.7 bits (78), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 9/51 (17%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVV---KPGEQKSVAGIITERGIFKAC 119
+ T D + D K MT+ N+G+++VV KP GIITER I KA
Sbjct: 15 ISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKP------VGIITERDIVKAI 59
>gi|23011113|ref|ZP_00051576.1| COG1309: Transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 205
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 48 EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
EHGFE+T+ +DI K G + T D + DAV + N AL+ EQ + A
Sbjct: 20 EHGFEATSFADIAKEVGLSRGNFYYHFKTKDEILDAVIAQRMSNTRALLAA--WEQDAAA 77
>gi|240137695|ref|YP_002962166.1| hypothetical protein MexAM1_META1p0994 [Methylobacterium extorquens
AM1]
gi|254560264|ref|YP_003067359.1| hypothetical protein METDI1794 [Methylobacterium extorquens DM4]
gi|418061381|ref|ZP_12699244.1| CBS domain containing protein [Methylobacterium extorquens DSM
13060]
gi|240007663|gb|ACS38889.1| hypothetical protein MexAM1_META1p0994 [Methylobacterium extorquens
AM1]
gi|254267542|emb|CAX23384.1| hypothetical protein METDI1794 [Methylobacterium extorquens DM4]
gi|373565075|gb|EHP91141.1| CBS domain containing protein [Methylobacterium extorquens DSM
13060]
Length = 146
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
D +V +A + + + GALVVV+ +V G++T+R IF+A
Sbjct: 20 DRSVAEAAQLLAEPGTGALVVVEGDADATVTGLLTQRDIFRA 61
>gi|357636277|ref|ZP_09134152.1| CBS domain protein [Streptococcus macacae NCTC 11558]
gi|357584731|gb|EHJ51934.1| CBS domain protein [Streptococcus macacae NCTC 11558]
Length = 219
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
+ + D + DA+ M H +G L VV +++ ++GIIT++ IFKA
Sbjct: 86 ITISKDAHLEDAIYLMMNHKIGVLPVV---DEEQISGIITDKDIFKA 129
>gi|154246304|ref|YP_001417262.1| signal-transduction protein [Xanthobacter autotrophicus Py2]
gi|154160389|gb|ABS67605.1| putative signal-transduction protein with CBS domains [Xanthobacter
autotrophicus Py2]
Length = 143
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 10/65 (15%)
Query: 55 TISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
T+S IL KG CT D TV DAV + +GA+VVV + SV GII+E
Sbjct: 2 TVSVILSRKGND------ICTIGPDATVGDAVARLAGRRIGAIVVVD--DAMSVEGIISE 53
Query: 113 RGIFK 117
R + +
Sbjct: 54 RDVVR 58
>gi|420157289|ref|ZP_14664127.1| CBS domain protein [Clostridium sp. MSTE9]
gi|394756582|gb|EJF39662.1| CBS domain protein [Clostridium sp. MSTE9]
Length = 144
Score = 34.7 bits (78), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
DD++ A + M QHN+G++ V +Q+ V GI+T+R I
Sbjct: 19 DDSIERAAQLMKQHNIGSIPVC---DQEKVVGIVTDRDI 54
>gi|171780209|ref|ZP_02921113.1| hypothetical protein STRINF_01997 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379705803|ref|YP_005204262.1| hypothetical protein Sinf_1484 [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171281557|gb|EDT46992.1| CBS domain protein [Streptococcus infantarius subsp. infantarius
ATCC BAA-102]
gi|374682502|gb|AEZ62791.1| CBS-domain-containing membrane protein [Streptococcus infantarius
subsp. infantarius CJ18]
Length = 219
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 3/37 (8%)
Query: 82 DAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
DAV +M +++VG L VV+ G+ V G+ITE+ +FKA
Sbjct: 96 DAVYAMMKNHVGILPVVESGQ---VYGVITEKDVFKA 129
>gi|406671720|ref|ZP_11078959.1| hypothetical protein HMPREF9706_01219 [Facklamia hominis CCUG
36813]
gi|405580970|gb|EKB55029.1| hypothetical protein HMPREF9706_01219 [Facklamia hominis CCUG
36813]
Length = 213
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 43 SARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE 102
SA + E T + +I++ + +L + V A + M QH+VG L+V+ E
Sbjct: 64 SAHEVNYLLEKTRVEEIMEIQ-------YLTIGPKEQVEKAAQLMLQHHVGVLLVM---E 113
Query: 103 QKSVAGIITERGIFKA 118
+ G+IT++ IFKA
Sbjct: 114 DTKLLGLITDKDIFKA 129
>gi|379003680|ref|YP_005259352.1| putative signal transduction protein [Pyrobaculum oguniense TE7]
gi|375159133|gb|AFA38745.1| putative signal-transduction protein containing cAMP-binding and
CBS domains [Pyrobaculum oguniense TE7]
Length = 142
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
+ T D + D K M + +G +V+V + G+++ER I KA N
Sbjct: 12 ITATPDARIKDVAKIMAERKIGLVVIVDKNQPDYAVGVVSERDIVKAVAN 61
>gi|358375980|dbj|GAA92553.1| NAD dependent epimerase/dehydratase [Aspergillus kawachii IFO 4308]
Length = 360
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 9 LSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDILKAKGKGA 67
L G I V+ IR P LR + + + V + G+++ +IL +KGKG+
Sbjct: 276 LVSGLITPQLVVNTIRKHFPQLREKIPAGTPDKVLPEGIHPTGWDTRISLEIL-SKGKGS 334
Query: 68 DGSWLWCTTDDTVYDAVKSMTQHNV 92
W + +++V DAV SM QHNV
Sbjct: 335 --QWEYIGLEESVRDAVHSMIQHNV 357
>gi|302342292|ref|YP_003806821.1| signal transduction protein [Desulfarculus baarsii DSM 2075]
gi|301638905|gb|ADK84227.1| putative signal transduction protein [Desulfarculus baarsii DSM
2075]
Length = 372
Score = 34.7 bits (78), Expect = 8.0, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 6/63 (9%)
Query: 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
S ++ D L AKG G D + W T +++ A+ + +H AL + P E+ VAG+ITE
Sbjct: 92 SVSLKDALPAKGGGHDYNLFWRT---SLHRAI--LARHGAAALGMPNP-EEAFVAGLITE 145
Query: 113 RGI 115
G+
Sbjct: 146 IGL 148
>gi|18312685|ref|NP_559352.1| hypothetical protein PAE1518 [Pyrobaculum aerophilum str. IM2]
gi|18160161|gb|AAL63534.1| conserved protein with 2 CBS domains [Pyrobaculum aerophilum str.
IM2]
Length = 141
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
G A S + + + D K M ++ VG +V+V P + + V G+++ER + +A
Sbjct: 3 GSFAKTSVVKAFPNTPIRDVAKLMAENKVGLVVLVDPADPERVVGVVSERDVVRAV 58
>gi|82701472|ref|YP_411038.1| signal-transduction protein [Nitrosospira multiformis ATCC 25196]
gi|82409537|gb|ABB73646.1| putative signal-transduction protein with CBS domains [Nitrosospira
multiformis ATCC 25196]
Length = 147
Score = 34.7 bits (78), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 7/68 (10%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
TT+ ++L+ GKG + + + D +VY+A+ M N+GAL+V+ G+ + GI TER
Sbjct: 2 TTVKELLE--GKGYEVASI--EPDKSVYEAMHLMAAKNIGALLVLHRGK---LVGIFTER 54
Query: 114 GIFKACHN 121
+ ++
Sbjct: 55 DYSRKAYS 62
>gi|126700027|ref|YP_001088924.1| negative regulator of gluconeogenesis [Clostridium difficile 630]
gi|254976003|ref|ZP_05272475.1| hypothetical protein CdifQC_11849 [Clostridium difficile QCD-66c26]
gi|255093390|ref|ZP_05322868.1| hypothetical protein CdifC_12129 [Clostridium difficile CIP 107932]
gi|255101569|ref|ZP_05330546.1| hypothetical protein CdifQCD-6_12219 [Clostridium difficile
QCD-63q42]
gi|255307437|ref|ZP_05351608.1| hypothetical protein CdifA_12662 [Clostridium difficile ATCC 43255]
gi|255315136|ref|ZP_05356719.1| hypothetical protein CdifQCD-7_12327 [Clostridium difficile
QCD-76w55]
gi|255517805|ref|ZP_05385481.1| hypothetical protein CdifQCD-_11886 [Clostridium difficile
QCD-97b34]
gi|255650921|ref|ZP_05397823.1| hypothetical protein CdifQCD_12091 [Clostridium difficile
QCD-37x79]
gi|255656389|ref|ZP_05401798.1| hypothetical protein CdifQCD-2_11994 [Clostridium difficile
QCD-23m63]
gi|260683991|ref|YP_003215276.1| hypothetical protein CD196_2256 [Clostridium difficile CD196]
gi|260687651|ref|YP_003218785.1| hypothetical protein CDR20291_2303 [Clostridium difficile R20291]
gi|296450164|ref|ZP_06891925.1| CBS domain protein [Clostridium difficile NAP08]
gi|296878545|ref|ZP_06902550.1| CBS domain protein [Clostridium difficile NAP07]
gi|306520805|ref|ZP_07407152.1| hypothetical protein CdifQ_13986 [Clostridium difficile QCD-32g58]
gi|384361633|ref|YP_006199485.1| hypothetical protein CDBI1_11705 [Clostridium difficile BI1]
gi|423084151|ref|ZP_17072656.1| putative transcriptional repressor CcpN [Clostridium difficile
002-P50-2011]
gi|423086792|ref|ZP_17075183.1| putative transcriptional repressor CcpN [Clostridium difficile
050-P50-2011]
gi|423092438|ref|ZP_17080242.1| putative transcriptional repressor CcpN [Clostridium difficile
70-100-2010]
gi|115251464|emb|CAJ69297.1| putative negative regulator of gluconeogenesis [Clostridium
difficile 630]
gi|260210154|emb|CBA64325.1| conserved hypothetical protein [Clostridium difficile CD196]
gi|260213668|emb|CBE05519.1| conserved hypothetical protein [Clostridium difficile R20291]
gi|296260927|gb|EFH07761.1| CBS domain protein [Clostridium difficile NAP08]
gi|296430352|gb|EFH16194.1| CBS domain protein [Clostridium difficile NAP07]
gi|357543198|gb|EHJ25231.1| putative transcriptional repressor CcpN [Clostridium difficile
002-P50-2011]
gi|357545901|gb|EHJ27864.1| putative transcriptional repressor CcpN [Clostridium difficile
050-P50-2011]
gi|357553940|gb|EHJ35676.1| putative transcriptional repressor CcpN [Clostridium difficile
70-100-2010]
Length = 212
Score = 34.3 bits (77), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 10/89 (11%)
Query: 31 RPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH 90
RP V + VS + + T+ DI+ + D+++YD + +M
Sbjct: 55 RPKVGYFYSGVSEINLIGKSVKEKTVEDIMSMP--------VLAKKDESIYDVIVTMFLS 106
Query: 91 NVGALVVVKPGEQKSVAGIITERGIFKAC 119
+VG++V++ E+ + G+++ + + KA
Sbjct: 107 DVGSIVIIDENEE--LCGVVSRKDLLKAT 133
>gi|374328232|ref|YP_005086432.1| putative signal-transduction protein with CBS domains [Pyrobaculum
sp. 1860]
gi|356643501|gb|AET34180.1| putative signal-transduction protein with CBS domains [Pyrobaculum
sp. 1860]
Length = 141
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 85 KSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
K M + VG +V+V P +Q V G+++ER + KA
Sbjct: 24 KLMAERRVGLVVLVDPKQQDRVVGVVSERDVVKAV 58
>gi|312111796|ref|YP_003990112.1| CBS domain containing protein [Geobacillus sp. Y4.1MC1]
gi|336236179|ref|YP_004588795.1| hypothetical protein Geoth_2826 [Geobacillus thermoglucosidasius
C56-YS93]
gi|423720712|ref|ZP_17694894.1| CBS domain-containing protein [Geobacillus thermoglucosidans
TNO-09.020]
gi|311216897|gb|ADP75501.1| CBS domain containing protein [Geobacillus sp. Y4.1MC1]
gi|335363034|gb|AEH48714.1| CBS domain containing protein [Geobacillus thermoglucosidasius
C56-YS93]
gi|383366065|gb|EID43356.1| CBS domain-containing protein [Geobacillus thermoglucosidans
TNO-09.020]
Length = 139
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 73 WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+CT D VY+A M NVGA+ +V G+ + G+IT+R +
Sbjct: 14 YCTPVDNVYEAAVKMRDFNVGAIPIVDHGQ---LIGMITDRDL 53
>gi|333372052|ref|ZP_08463988.1| CBS domain protein [Desmospora sp. 8437]
gi|332974960|gb|EGK11870.1| CBS domain protein [Desmospora sp. 8437]
Length = 142
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
+ D VY A M QHN+G++ VV+ G+ V G++T+R +
Sbjct: 15 VSPQDNVYKAASLMRQHNIGSVPVVENGQ---VRGMVTDRDLV 54
>gi|297618873|ref|YP_003706978.1| putative signal transduction protein [Methanococcus voltae A3]
gi|297377850|gb|ADI36005.1| putative signal transduction protein with CBS domains
[Methanococcus voltae A3]
Length = 281
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Query: 38 FESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVV 97
FE + + ++E T IS+++ K T ++++ DAV + +N GA+ +
Sbjct: 207 FEKLKTGNIDE--ITDTRISELMNENVK-------TLTPENSILDAVNLILNNNFGAIPI 257
Query: 98 VKPGEQKSVAGIITERGIF 116
V + GIITE+ I
Sbjct: 258 VDSENSTKIVGIITEKDIL 276
>gi|448583792|ref|ZP_21647015.1| hypothetical protein C454_10576 [Haloferax gibbonsii ATCC 33959]
gi|445729145|gb|ELZ80744.1| hypothetical protein C454_10576 [Haloferax gibbonsii ATCC 33959]
Length = 380
Score = 34.3 bits (77), Expect = 8.7, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T +++V DAV M +H++ LVV + V G++T+ + +A
Sbjct: 214 TPEESVRDAVARMLEHDIAGLVVTPADDDGEVLGVVTKTDVLRA 257
>gi|448565728|ref|ZP_21636595.1| hypothetical protein C457_14374 [Haloferax prahovense DSM 18310]
gi|445715472|gb|ELZ67228.1| hypothetical protein C457_14374 [Haloferax prahovense DSM 18310]
Length = 380
Score = 34.3 bits (77), Expect = 8.8, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T +++V DAV M +H++ LVV + V G++T+ + +A
Sbjct: 214 TPEESVRDAVARMLEHDIAGLVVTPADDDGEVLGVVTKTDVLRA 257
>gi|443626892|ref|ZP_21111299.1| putative Cystathionine beta-synthase [Streptomyces
viridochromogenes Tue57]
gi|443339537|gb|ELS53772.1| putative Cystathionine beta-synthase [Streptomyces
viridochromogenes Tue57]
Length = 462
Score = 34.3 bits (77), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 46 MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
M ++GF S + D+L K G+ S + D+TV A++ + ++ V + +VKP
Sbjct: 311 MADYGFLEDEGPSARVGDVLNDKAGGSIPSLVHMHPDETVGQAIEVLREYGVSQMPIVKP 370
Query: 101 GE------QKSVAGIITERGIFKA 118
G V G + ER + A
Sbjct: 371 GAGHPDVMAAEVVGSVVERELLDA 394
>gi|421858959|ref|ZP_16291208.1| FOG: CBS domain [Paenibacillus popilliae ATCC 14706]
gi|410831478|dbj|GAC41645.1| FOG: CBS domain [Paenibacillus popilliae ATCC 14706]
Length = 142
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
S + CT D +Y+A M QH+ G + +V GE+ V G++T+R +
Sbjct: 11 SIVTCTAQDNIYEAAVKMKQHDTGFIPIVD-GER--VIGVVTDRDL 53
>gi|379708877|ref|YP_005264082.1| hypothetical protein NOCYR_2676 [Nocardia cyriacigeorgica GUH-2]
gi|374846376|emb|CCF63446.1| conserved protein of unknown function, putative CBS domain
[Nocardia cyriacigeorgica GUH-2]
Length = 144
Score = 34.3 bits (77), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
I++IL+ KG D TV + ++ HN+GA+VV G + GI++ER +
Sbjct: 3 IAEILRRKGS----EVATVRPDSTVRALLATLAAHNIGAVVVSSDG--VGITGIVSERDV 56
Query: 116 FKACHN 121
++ H
Sbjct: 57 VRSLHQ 62
>gi|145591169|ref|YP_001153171.1| signal-transduction protein [Pyrobaculum arsenaticum DSM 13514]
gi|145282937|gb|ABP50519.1| putative signal-transduction protein with CBS domains [Pyrobaculum
arsenaticum DSM 13514]
Length = 135
Score = 34.3 bits (77), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
T D T+ +A + + +H++G LVVV+ + G+++ER + +A
Sbjct: 22 TPDKTLEEATELLAKHDIGLLVVVERDNPRRPIGVLSERDVVRA 65
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,695,902,773
Number of Sequences: 23463169
Number of extensions: 56483522
Number of successful extensions: 170612
Number of sequences better than 100.0: 554
Number of HSP's better than 100.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 412
Number of HSP's that attempted gapping in prelim test: 170326
Number of HSP's gapped (non-prelim): 627
length of query: 121
length of database: 8,064,228,071
effective HSP length: 88
effective length of query: 33
effective length of database: 5,999,469,199
effective search space: 197982483567
effective search space used: 197982483567
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)