BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033339
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
pdb|4FRY|B Chain B, The Structure Of A Putative Signal-Transduction Protein
With Cbs Domains From Burkholderia Ambifaria Mc40-6
Length = 157
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 50 GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
G STT++ ILKAK G ++ T +D VYDA+K M + +GAL+VV + +AG
Sbjct: 3 GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITER 113
I+TER
Sbjct: 58 IVTER 62
>pdb|2RC3|A Chain A, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|B Chain B, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|C Chain C, Crystal Structure Of Cbs Domain, Ne2398
pdb|2RC3|D Chain D, Crystal Structure Of Cbs Domain, Ne2398
Length = 135
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 7/59 (11%)
Query: 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T+ +L+ KG + + DD+V++A++ M N+GAL+V+K + + GI+TER
Sbjct: 7 TVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTER 58
>pdb|2XED|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
pdb|2XED|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase C194s
Mutant With A Covalently Bound Succinylcysteine
Intermediate
Length = 273
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 21 QRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISD--ILKAKGKGADGSWLWCTTDD 78
QR+ LV P +RP+ A +E GF TISD L+ AD + + C +
Sbjct: 147 QRVALVTPYMRPLAEKVV-----AYLEAEGF---TISDWRALEV----ADNTEVGCIPGE 194
Query: 79 TVYDAVKSMTQHNVGALVV 97
V A +S+ V ALV+
Sbjct: 195 QVMAAARSLDLSEVDALVI 213
>pdb|2XEC|A Chain A, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|B Chain B, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|C Chain C, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
pdb|2XEC|D Chain D, Nocardia Farcinica Maleate Cis-Trans Isomerase Bound To
Tris
Length = 273
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 14/79 (17%)
Query: 21 QRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISD--ILKAKGKGADGSWLWCTTDD 78
QR+ LV P +RP+ A +E GF TISD L+ AD + + C +
Sbjct: 147 QRVALVTPYMRPLAEKVV-----AYLEAEGF---TISDWRALEV----ADNTEVGCIPGE 194
Query: 79 TVYDAVKSMTQHNVGALVV 97
V A +S+ V ALV+
Sbjct: 195 QVMAAARSLDLSEVDALVI 213
>pdb|2EF7|A Chain A, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
pdb|2EF7|B Chain B, Crystal Structure Of St2348, A Hypothetical Protein With
Cbs Domains From Sulfolobus Tokodaii Strain7
Length = 133
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVV---KPGEQKSVAGIITERGIFKAC 119
+ T D + D K T+ N+G+++VV KP GIITER I KA
Sbjct: 15 ISVTKDAKLNDIAKVXTEKNIGSVIVVDGNKP------VGIITERDIVKAI 59
>pdb|3P6A|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
pdb|3P6A|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
(R399e Mutant)
Length = 377
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 20 LQRIRLVNPMLRPV--VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
L+ ++ + P L + V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 65 LEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 119
>pdb|3ODX|A Chain A, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
pdb|3ODX|B Chain B, Crystal Structure Of An N-Terminally Truncated Linker-DhPH
DOMAINS OF P115-Rhogef
Length = 417
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 20 LQRIRLVNPMLRPV--VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
L+ ++ + P L + V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 105 LEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 159
>pdb|3ODO|A Chain A, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
pdb|3ODO|B Chain B, Crystal Structure Of The DhPH DOMAINS OF P115-Rhogef
Length = 375
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 20 LQRIRLVNPMLRPV--VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
L+ ++ + P L + V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 63 LEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 117
>pdb|3ODW|A Chain A, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
pdb|3ODW|B Chain B, Crystal Structure Of The Linker-DhPH DOMAINS OF
P115-Rhogef
Length = 536
Score = 29.3 bits (64), Expect = 0.56, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 20 LQRIRLVNPMLRPV--VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
L+ ++ + P L + V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 218 LEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 272
>pdb|3TSB|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSB|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
pdb|3TSD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
pdb|3TSD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase From Bacillus Anthracis Str. Ames
Complexed With Xmp
Length = 511
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D +K G + T + VYDA M ++ + + VV +++ + GIIT R
Sbjct: 110 DKVKRSESGVISDPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNR 165
>pdb|2IDA|A Chain A, Solution Nmr Structure Of Protein Rpa1320 From
Rhodopseudomonas Palustris. Northeast Structural
Genomics Consortium Target Rpt3; Ontario Center For
Structural Proteomics Target Rp1313
Length = 102
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 63 KGKGADGSWLWCTTDDTVYDAVKSMTQHN 91
+G W WC D+ ++D MT HN
Sbjct: 67 EGYDPPEGWGWCYVDEVMFDLSDRMTPHN 95
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
TV+DAVK M ++++ LVV + + G+++ER I K
Sbjct: 27 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIK 63
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
TV+DAVK M ++++ LVV + + G+++ER I K
Sbjct: 41 TVFDAVKIMNENHLYGLVV--KDDNGNDVGLLSERSIIK 77
>pdb|2C0H|A Chain A, X-Ray Structure Of Beta-Mannanase From Blue Mussel Mytilus
Edulis
Length = 353
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 29 MLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT 88
+ +P+V F +EHG ++ S A KG G+W W TD + + ++ M
Sbjct: 286 LKKPMVIGEFN-------QEHGAGMSSESMFEWAYTKGYSGAWTWSRTDVSWNNQLRGM- 337
Query: 89 QH 90
QH
Sbjct: 338 QH 339
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 92 VGALVVVKPGEQKSVAGIITE 112
VG +V+V+PGE+ V G++ E
Sbjct: 153 VGDIVIVRPGEKIPVDGVVVE 173
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 92 VGALVVVKPGEQKSVAGIITE 112
VG +V+V+PGE+ V G++ E
Sbjct: 231 VGDIVIVRPGEKIPVDGVVVE 251
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
D + G +W+ D V AV + Q+N AL V P ++A
Sbjct: 46 DFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALA 95
>pdb|3NCP|A Chain A, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|B Chain B, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|C Chain C, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCP|D Chain D, Glnk2 From Archaeoglobus Fulgidus
pdb|3NCQ|A Chain A, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCQ|B Chain B, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCQ|C Chain C, Glnk2 From Archaeoglobus Fulgidus, Atp Complex
pdb|3NCR|A Chain A, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
pdb|3NCR|B Chain B, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
pdb|3NCR|C Chain C, Glnk2 From Archaeoglubus Fulgidus, Adp Complex
Length = 119
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 33 VVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSW 71
V + +F V +A +EE GF T++D+ KG+G G
Sbjct: 8 VRAEKFPEVKAA-LEERGFYGMTVTDV---KGRGQQGGM 42
>pdb|4EGV|A Chain A, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|B Chain B, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|C Chain C, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|D Chain D, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|E Chain E, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|F Chain F, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
Length = 520
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 64 GKGADGSWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVA 107
G+ DGS T D D VK +++ + +GA +VV PGE+ + A
Sbjct: 475 GRLDDGSRFLAKTKDE--DLVKLLSEGDPIGAKIVVTPGEKSNRA 517
>pdb|3USB|A Chain A, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
pdb|3USB|B Chain B, Crystal Structure Of Bacillus Anthracis Inosine
Monophosphate Dehydrogenase In The Complex With Imp
Length = 511
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
D +K G + T + VYDA ++ + + VV +++ + GIIT R
Sbjct: 110 DKVKRSESGVISDPFFLTPEHQVYDAEHLXGKYRISGVPVVNNLDERKLVGIITNR 165
>pdb|1TOA|A Chain A, Periplasmic Zinc Binding Protein Troa From Treponema
Pallidum
pdb|1TOA|B Chain B, Periplasmic Zinc Binding Protein Troa From Treponema
Pallidum
Length = 313
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 62 AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG 101
+K ADG L TT + DAVK++ Q +V ++ PG
Sbjct: 30 SKDAAADGKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPG 69
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 92 VGALVVVKPGEQKSVAGIITE 112
VG +V+V+PGE+ V G++ E
Sbjct: 32 VGDIVIVRPGEKIPVDGVVVE 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,194,507
Number of Sequences: 62578
Number of extensions: 105882
Number of successful extensions: 334
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 25
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)