BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033339
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis
thaliana GN=CBSX3 PE=1 SV=1
Length = 206
Score = 181 bits (459), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 85/118 (72%), Positives = 101/118 (85%), Gaps = 1/118 (0%)
Query: 1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
MQG I+SF+S GN+VK +VLQ +R++NP ++P V SR ES ARMEE GFESTTISD+
Sbjct: 1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60
Query: 60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
+K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITER +
Sbjct: 61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLR 118
>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus
ambivalens PE=4 SV=1
Length = 164
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
T+ +A K M +HN+G+LVV+ Q V GIITER I KA N
Sbjct: 21 TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERDIVKAASN 61
>sp|Q58629|Y1232_METJA Uncharacterized protein MJ1232 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1232 PE=4 SV=1
Length = 296
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
D+ +YDA+K M ++NVG LV+V + + GIIT I K
Sbjct: 246 DEKIYDALKIMNKNNVGRLVIVD--DNNKIVGIITRTDILK 284
>sp|Q58069|Y653_METJA Uncharacterized protein MJ0653 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0653 PE=4 SV=1
Length = 194
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
T + ++YD MT++N+GA+V+V E GI+TER I K
Sbjct: 21 TKNMSIYDIANIMTENNIGAVVIV---ENNKPIGIVTERDIVK 60
>sp|O34682|YLBB_BACSU Uncharacterized protein YlbB OS=Bacillus subtilis (strain 168)
GN=ylbB PE=4 SV=2
Length = 148
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Query: 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
T I D++ A +CT D VY+A M NVGA+ VV + +++ GI+T+R
Sbjct: 2 TKIKDLMTA-------DLQYCTVLDNVYEAAVKMKDANVGAIPVVDE-DGETLVGIVTDR 53
Query: 114 GI 115
+
Sbjct: 54 DL 55
>sp|P54606|YHCV_BACSU CBS domain-containing protein YhcV OS=Bacillus subtilis (strain
168) GN=yhcV PE=4 SV=1
Length = 140
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Query: 74 CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ + T+ +A M QHNVGA+ VV EQ + G++T+R I
Sbjct: 15 VSPNQTIQEAASLMKQHNVGAIPVV---EQGVLKGMLTDRDI 53
>sp|Q313S5|GATA_DESDG Glutamyl-tRNA(Gln) amidotransferase subunit A OS=Desulfovibrio
desulfuricans (strain G20) GN=gatA PE=3 SV=1
Length = 487
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 18 AVLQRIRLVNPMLRPVVSSRFE-SVSSAR-MEEHGFEST--------TISDILKAKGKGA 67
A + RI P + ++++R E +++ AR M+ G++ T+ D+L G
Sbjct: 29 ACIDRIEATEPAVHALLATRCEEALAEARAMDAAGYDPAKPLWGVPVTVKDVLSTSGVAT 88
Query: 68 DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
+DA + GA+++ K + G TE+ FK HN
Sbjct: 89 TCGSRILENYVPFFDAAAVSRLKDAGAVILAKTNMDEFAMGSSTEKSAFKTTHN 142
>sp|Q4L385|IMDH_STAHJ Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=guaB PE=3 SV=1
Length = 488
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T D++VY+A M ++ + + +V E + + GI+T R +
Sbjct: 100 FYLTPDESVYEAEALMGKYRISGVPIVSDKESRELVGILTNRDL 143
>sp|Q0BS63|LPXB_GRABC Lipid-A-disaccharide synthase OS=Granulibacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1) GN=lpxB PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Query: 12 GNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFES 53
G+++ + ++ +R +NP S RF + RMEE GF+S
Sbjct: 15 GDVLGARLIHALRAINP------SIRFAGIGGPRMEECGFQS 50
>sp|P21879|IMDH_BACSU Inosine-5'-monophosphate dehydrogenase OS=Bacillus subtilis (strain
168) GN=guaB PE=1 SV=2
Length = 488
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 58 DILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
D +K +G + + T D V+DA M ++ + + +V E + + GIIT R +
Sbjct: 86 DKVKRSERGVITNPFFLTPDHQVFDAEHLMGKYRISGVPIVNNEEDQKLVGIITNRDL 143
>sp|P15889|YR33_THEPE Uncharacterized 33.4 kDa protein in ribosomal RNA operon
OS=Thermofilum pendens PE=4 SV=1
Length = 300
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 83 AVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116
AV M +H +GALVV G+ + GI+TER +
Sbjct: 243 AVSLMKKHGIGALVVTHDGKPR---GIVTERDVL 273
>sp|Q92888|ARHG1_HUMAN Rho guanine nucleotide exchange factor 1 OS=Homo sapiens GN=ARHGEF1
PE=1 SV=2
Length = 912
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 20 LQRIRLVNPMLRPV--VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
L+ ++ + P L + V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 454 LEELQNIFPSLDELIEVHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 508
>sp|O73590|ZFHX4_CHICK Zinc finger homeobox protein 4 OS=Gallus gallus GN=ZFHX4 PE=2 SV=2
Length = 3573
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 30 LRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ 89
L P ++R + SS +H F +T S G G+ GS + C DTV + +S+
Sbjct: 572 LHPNETARGDEDSSVTPHQHSFTPSTPS-----AGDGSPGSGIECPKCDTVLGSSRSLGG 626
Query: 90 H 90
H
Sbjct: 627 H 627
>sp|Q9Z1I6|ARHG1_RAT Rho guanine nucleotide exchange factor 1 OS=Rattus norvegicus
GN=Arhgef1 PE=1 SV=1
Length = 919
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 468 VHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 506
>sp|Q61210|ARHG1_MOUSE Rho guanine nucleotide exchange factor 1 OS=Mus musculus GN=Arhgef1
PE=1 SV=2
Length = 920
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 34 VSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWL 72
V S F R +E G+ I D+L A+ GA+GSW
Sbjct: 469 VHSLFLDRLMKRRQESGYLIEEIGDVLLARFDGAEGSWF 507
>sp|Q54443|DEXT_STRMU Dextranase OS=Streptococcus mutans serotype c (strain ATCC 700610 /
UA159) GN=dexA PE=1 SV=2
Length = 850
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 27 NPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGA 67
N + P +S R S+S A + + G + T S++LK G GA
Sbjct: 792 NDLQLPTLSKRSLSISQAELPQTGDNNETRSNLLKVIGAGA 832
>sp|Q54JA3|SIBE_DICDI Integrin beta-like protein E OS=Dictyostelium discoideum GN=sibE PE=1
SV=1
Length = 1946
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 8/90 (8%)
Query: 4 AIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFE-------SVSSARMEEHGFESTTI 56
+ Q+ S G I S ++LV+ ++PV SS SVS + +ST+
Sbjct: 959 SFQAVDSVGAISTSTCTLTVKLVHTNIKPVSSSTSPISVIPRGSVSLTLVSTDS-DSTSA 1017
Query: 57 SDILKAKGKGADGSWLWCTTDDTVYDAVKS 86
+K+ KGA G + C+T+D ++ ++
Sbjct: 1018 KFTIKSVNKGAKGDFYTCSTNDCTCNSTQT 1047
>sp|Q8NY70|IMDH_STAAW Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain MW2) GN=guaB PE=3 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
>sp|Q6GC82|IMDH_STAAS Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain MSSA476) GN=guaB PE=3 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
>sp|Q6GJQ7|IMDH_STAAR Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain MRSA252) GN=guaB PE=3 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
>sp|P99106|IMDH_STAAN Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain N315) GN=guaB PE=1 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
>sp|P65169|IMDH_STAAM Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=guaB PE=1 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
>sp|Q5HIQ7|IMDH_STAAC Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain COL) GN=guaB PE=3 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
>sp|Q2YVL6|IMDH_STAAB Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=guaB PE=3 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
>sp|Q2G0Y7|IMDH_STAA8 Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain NCTC 8325) GN=guaB PE=3 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
>sp|Q2FJM6|IMDH_STAA3 Inosine-5'-monophosphate dehydrogenase OS=Staphylococcus aureus
(strain USA300) GN=guaB PE=3 SV=1
Length = 488
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 72 LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
+ T +++VY+A M ++ + + +V E +++ GI+T R +
Sbjct: 100 FFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDL 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,283,349
Number of Sequences: 539616
Number of extensions: 1346326
Number of successful extensions: 4416
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4388
Number of HSP's gapped (non-prelim): 36
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)