Query 033339
Match_columns 121
No_of_seqs 115 out of 1922
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 12:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00571 CBS: CBS domain CBS d 99.4 2E-12 4.2E-17 75.4 7.3 56 56-120 1-56 (57)
2 COG2524 Predicted transcriptio 99.0 1.6E-09 3.6E-14 81.2 7.4 62 50-120 230-291 (294)
3 cd04603 CBS_pair_KefB_assoc Th 98.9 2.4E-09 5.1E-14 69.6 5.9 55 54-117 56-110 (111)
4 cd04619 CBS_pair_6 The CBS dom 98.9 1.1E-08 2.3E-13 66.7 6.7 56 53-117 58-113 (114)
5 cd04597 CBS_pair_DRTGG_assoc2 98.8 9E-09 2E-13 67.8 5.6 55 54-117 58-112 (113)
6 COG3620 Predicted transcriptio 98.8 1E-08 2.2E-13 72.2 5.3 58 53-120 64-121 (187)
7 COG3448 CBS-domain-containing 98.8 1.1E-08 2.4E-13 78.3 5.7 101 8-120 271-372 (382)
8 cd04618 CBS_pair_5 The CBS dom 98.8 1.6E-08 3.6E-13 64.9 5.5 45 71-117 52-97 (98)
9 cd04620 CBS_pair_7 The CBS dom 98.8 3.2E-08 7E-13 64.1 6.4 56 53-117 57-114 (115)
10 cd04600 CBS_pair_HPP_assoc Thi 98.7 3.2E-08 6.9E-13 64.8 6.2 57 53-118 68-124 (124)
11 cd04617 CBS_pair_4 The CBS dom 98.7 3.5E-08 7.6E-13 64.6 6.3 59 52-117 56-117 (118)
12 cd04625 CBS_pair_12 The CBS do 98.7 4.9E-08 1.1E-12 62.8 6.8 55 53-117 57-111 (112)
13 COG2524 Predicted transcriptio 98.7 2.5E-08 5.5E-13 74.9 6.0 59 53-121 171-229 (294)
14 cd04630 CBS_pair_17 The CBS do 98.7 5.1E-08 1.1E-12 63.2 6.6 56 53-118 59-114 (114)
15 cd04607 CBS_pair_NTP_transfera 98.7 5.6E-08 1.2E-12 62.9 6.8 55 54-117 58-112 (113)
16 cd04641 CBS_pair_28 The CBS do 98.7 5.1E-08 1.1E-12 63.9 6.3 46 70-117 74-119 (120)
17 cd04627 CBS_pair_14 The CBS do 98.7 6.6E-08 1.4E-12 63.6 6.6 45 70-116 77-121 (123)
18 cd04596 CBS_pair_DRTGG_assoc T 98.7 7.6E-08 1.7E-12 61.8 6.6 56 53-117 52-107 (108)
19 cd04593 CBS_pair_EriC_assoc_ba 98.7 8.1E-08 1.8E-12 62.3 6.5 56 54-118 58-115 (115)
20 cd04606 CBS_pair_Mg_transporte 98.7 1.1E-07 2.3E-12 61.2 6.8 57 53-118 52-108 (109)
21 cd04618 CBS_pair_5 The CBS dom 98.7 1.2E-07 2.5E-12 60.9 6.8 47 71-119 3-50 (98)
22 cd04631 CBS_pair_18 The CBS do 98.7 9.8E-08 2.1E-12 62.6 6.6 56 54-118 70-125 (125)
23 PRK10892 D-arabinose 5-phospha 98.6 9.5E-08 2.1E-12 73.6 7.2 56 53-118 268-323 (326)
24 cd04585 CBS_pair_ACT_assoc2 Th 98.6 1.1E-07 2.3E-12 61.7 6.4 56 53-117 66-121 (122)
25 cd04604 CBS_pair_KpsF_GutQ_ass 98.6 1.2E-07 2.7E-12 60.9 6.6 55 54-117 59-113 (114)
26 cd04610 CBS_pair_ParBc_assoc T 98.6 1.3E-07 2.8E-12 60.3 6.5 55 54-117 52-106 (107)
27 PRK07107 inosine 5-monophospha 98.6 1.1E-07 2.4E-12 77.7 7.6 59 53-118 160-218 (502)
28 cd04587 CBS_pair_CAP-ED_DUF294 98.6 8.2E-08 1.8E-12 61.8 5.6 55 54-117 58-112 (113)
29 TIGR01137 cysta_beta cystathio 98.6 1.7E-07 3.8E-12 75.0 8.6 69 42-119 311-391 (454)
30 PRK11543 gutQ D-arabinose 5-ph 98.6 1.2E-07 2.5E-12 72.8 7.3 57 53-118 262-318 (321)
31 cd04635 CBS_pair_22 The CBS do 98.6 1.5E-07 3.2E-12 61.5 6.5 57 53-118 66-122 (122)
32 cd04803 CBS_pair_15 The CBS do 98.6 1.8E-07 3.9E-12 61.0 6.8 56 53-117 66-121 (122)
33 cd04629 CBS_pair_16 The CBS do 98.6 1.4E-07 3E-12 60.8 6.1 55 53-117 59-113 (114)
34 cd04641 CBS_pair_28 The CBS do 98.6 2.2E-07 4.8E-12 60.8 7.2 48 70-119 2-49 (120)
35 cd04639 CBS_pair_26 The CBS do 98.6 1.6E-07 3.5E-12 60.3 6.2 56 53-117 55-110 (111)
36 cd04642 CBS_pair_29 The CBS do 98.6 1.8E-07 3.9E-12 61.9 6.5 46 70-117 80-125 (126)
37 cd04582 CBS_pair_ABC_OpuCA_ass 98.6 1.8E-07 4E-12 59.5 6.3 54 55-117 52-105 (106)
38 cd04801 CBS_pair_M50_like This 98.6 1.3E-07 2.8E-12 61.3 5.5 58 53-117 56-113 (114)
39 cd04615 CBS_pair_2 The CBS dom 98.6 2.5E-07 5.5E-12 59.5 6.9 57 52-117 56-112 (113)
40 cd04614 CBS_pair_1 The CBS dom 98.6 1.5E-07 3.3E-12 59.9 5.7 57 54-118 40-96 (96)
41 cd04583 CBS_pair_ABC_OpuCA_ass 98.6 2.2E-07 4.8E-12 59.2 6.5 55 54-117 54-108 (109)
42 TIGR00400 mgtE Mg2+ transporte 98.6 2.1E-07 4.5E-12 75.1 7.8 59 53-120 194-252 (449)
43 cd04611 CBS_pair_PAS_GGDEF_DUF 98.6 2.6E-07 5.6E-12 59.1 6.7 56 53-117 55-110 (111)
44 cd04602 CBS_pair_IMPDH_2 This 98.6 2.2E-07 4.8E-12 60.3 6.4 55 54-117 57-113 (114)
45 cd04621 CBS_pair_8 The CBS dom 98.6 2.9E-07 6.4E-12 62.2 7.2 55 53-117 80-134 (135)
46 cd04632 CBS_pair_19 The CBS do 98.6 2.3E-07 4.9E-12 61.3 6.4 57 54-117 71-127 (128)
47 cd04640 CBS_pair_27 The CBS do 98.6 1.5E-07 3.3E-12 62.3 5.6 58 53-117 63-125 (126)
48 PRK10892 D-arabinose 5-phospha 98.6 2.4E-07 5.3E-12 71.3 7.5 60 53-119 201-260 (326)
49 cd04608 CBS_pair_PALP_assoc Th 98.6 7.3E-08 1.6E-12 64.2 4.0 58 53-119 58-124 (124)
50 cd04592 CBS_pair_EriC_assoc_eu 98.6 3.5E-07 7.5E-12 62.2 7.3 47 71-119 3-49 (133)
51 cd04589 CBS_pair_CAP-ED_DUF294 98.6 3.4E-07 7.3E-12 58.9 7.0 55 53-117 56-110 (111)
52 COG3448 CBS-domain-containing 98.6 9.1E-08 2E-12 73.4 4.9 57 53-118 244-300 (382)
53 cd04599 CBS_pair_GGDEF_assoc2 98.6 3.5E-07 7.5E-12 58.1 6.9 54 53-116 50-103 (105)
54 cd04643 CBS_pair_30 The CBS do 98.6 2.2E-07 4.9E-12 60.0 6.1 55 53-118 62-116 (116)
55 cd04601 CBS_pair_IMPDH This cd 98.6 2.6E-07 5.6E-12 59.0 6.3 56 53-117 53-109 (110)
56 cd04622 CBS_pair_9 The CBS dom 98.6 2.5E-07 5.4E-12 59.5 6.2 55 54-117 58-112 (113)
57 cd04595 CBS_pair_DHH_polyA_Pol 98.6 3.8E-07 8.3E-12 58.5 7.0 55 53-117 55-109 (110)
58 cd04800 CBS_pair_CAP-ED_DUF294 98.5 3.8E-07 8.2E-12 58.5 6.9 55 53-117 56-110 (111)
59 cd04588 CBS_pair_CAP-ED_DUF294 98.5 3.4E-07 7.3E-12 58.7 6.6 55 54-117 55-109 (110)
60 cd04590 CBS_pair_CorC_HlyC_ass 98.5 3.2E-07 7E-12 58.9 6.5 54 54-117 57-110 (111)
61 cd04626 CBS_pair_13 The CBS do 98.5 3.6E-07 7.7E-12 58.8 6.7 54 54-117 57-110 (111)
62 cd04623 CBS_pair_10 The CBS do 98.5 3.8E-07 8.3E-12 58.4 6.7 55 53-117 58-112 (113)
63 cd04802 CBS_pair_3 The CBS dom 98.5 3.9E-07 8.4E-12 58.6 6.7 55 53-117 57-111 (112)
64 PRK07807 inosine 5-monophospha 98.5 3.5E-07 7.7E-12 74.4 7.9 57 54-119 148-204 (479)
65 cd04613 CBS_pair_SpoIVFB_EriC_ 98.5 3E-07 6.6E-12 59.0 6.0 55 54-117 58-113 (114)
66 PRK14869 putative manganese-de 98.5 3.1E-07 6.8E-12 75.4 7.5 58 54-120 68-125 (546)
67 cd04614 CBS_pair_1 The CBS dom 98.5 3.9E-07 8.4E-12 58.0 6.4 47 70-118 2-48 (96)
68 COG0517 FOG: CBS domain [Gener 98.5 3.9E-07 8.5E-12 58.8 6.4 53 55-116 63-117 (117)
69 PRK14869 putative manganese-de 98.5 3.7E-07 7.9E-12 75.0 7.7 57 53-118 245-302 (546)
70 TIGR01303 IMP_DH_rel_1 IMP deh 98.5 4.2E-07 9.2E-12 73.9 7.9 57 54-119 146-202 (475)
71 cd04605 CBS_pair_MET2_assoc Th 98.5 6.8E-07 1.5E-11 57.3 7.4 49 69-119 2-50 (110)
72 cd04586 CBS_pair_BON_assoc Thi 98.5 3E-07 6.5E-12 61.5 5.9 56 53-118 80-135 (135)
73 cd04633 CBS_pair_20 The CBS do 98.5 3.7E-07 7.9E-12 59.5 6.1 55 53-117 66-120 (121)
74 cd04612 CBS_pair_SpoIVFB_EriC_ 98.5 5.1E-07 1.1E-11 57.7 6.6 54 55-117 57-110 (111)
75 smart00116 CBS Domain in cysta 98.5 6.2E-07 1.3E-11 48.5 6.1 47 71-119 2-48 (49)
76 cd04591 CBS_pair_EriC_assoc_eu 98.5 4.5E-07 9.8E-12 58.6 6.2 44 71-117 61-104 (105)
77 cd04624 CBS_pair_11 The CBS do 98.5 5.9E-07 1.3E-11 57.7 6.7 56 53-117 56-111 (112)
78 cd04637 CBS_pair_24 The CBS do 98.5 5.1E-07 1.1E-11 59.0 6.4 55 54-117 67-121 (122)
79 cd04594 CBS_pair_EriC_assoc_ar 98.5 4.8E-07 1E-11 57.9 6.1 54 54-117 50-103 (104)
80 cd04636 CBS_pair_23 The CBS do 98.5 6.4E-07 1.4E-11 59.6 6.6 53 55-117 79-131 (132)
81 PLN02274 inosine-5'-monophosph 98.5 7.6E-07 1.6E-11 72.9 8.3 60 53-119 162-221 (505)
82 cd04584 CBS_pair_ACT_assoc Thi 98.5 8.5E-07 1.8E-11 57.6 7.0 55 53-117 66-120 (121)
83 cd04608 CBS_pair_PALP_assoc Th 98.5 8.9E-07 1.9E-11 58.9 7.2 48 70-119 3-50 (124)
84 cd04605 CBS_pair_MET2_assoc Th 98.5 8.4E-07 1.8E-11 56.8 6.8 55 54-117 55-109 (110)
85 PRK01862 putative voltage-gate 98.5 5.8E-07 1.3E-11 74.3 7.5 60 54-120 512-571 (574)
86 cd04630 CBS_pair_17 The CBS do 98.4 1.2E-06 2.7E-11 56.6 7.2 47 71-119 3-50 (114)
87 cd04624 CBS_pair_11 The CBS do 98.4 1.3E-06 2.8E-11 56.1 7.2 48 70-119 2-49 (112)
88 PRK11543 gutQ D-arabinose 5-ph 98.4 1.1E-06 2.4E-11 67.4 7.5 60 53-119 196-255 (321)
89 cd04643 CBS_pair_30 The CBS do 98.4 1.5E-06 3.2E-11 56.0 7.0 47 71-119 3-49 (116)
90 cd04617 CBS_pair_4 The CBS dom 98.4 1.5E-06 3.4E-11 56.7 7.1 48 70-119 2-49 (118)
91 COG2239 MgtE Mg/Co/Ni transpor 98.4 4.3E-07 9.4E-12 73.3 5.3 59 53-120 195-253 (451)
92 COG4109 Predicted transcriptio 98.4 1.1E-06 2.3E-11 68.9 7.1 59 53-120 248-306 (432)
93 cd04582 CBS_pair_ABC_OpuCA_ass 98.4 1.5E-06 3.3E-11 55.2 6.7 47 70-118 2-48 (106)
94 cd04623 CBS_pair_10 The CBS do 98.4 1.9E-06 4.2E-11 55.1 7.2 47 71-119 3-49 (113)
95 cd04600 CBS_pair_HPP_assoc Thi 98.4 1.7E-06 3.8E-11 56.5 7.0 48 70-119 3-50 (124)
96 cd04593 CBS_pair_EriC_assoc_ba 98.4 1.9E-06 4.1E-11 55.8 7.0 48 70-119 2-49 (115)
97 cd04613 CBS_pair_SpoIVFB_EriC_ 98.4 1.7E-06 3.7E-11 55.4 6.8 48 70-119 2-49 (114)
98 cd04590 CBS_pair_CorC_HlyC_ass 98.4 2.5E-06 5.5E-11 54.6 7.3 47 71-119 3-50 (111)
99 cd04632 CBS_pair_19 The CBS do 98.4 2.2E-06 4.9E-11 56.5 7.2 47 71-119 3-49 (128)
100 cd04642 CBS_pair_29 The CBS do 98.4 1.4E-06 3.1E-11 57.5 6.2 47 71-119 3-49 (126)
101 PRK01862 putative voltage-gate 98.4 2E-06 4.3E-11 71.2 8.2 59 52-119 445-503 (574)
102 cd04619 CBS_pair_6 The CBS dom 98.3 2.5E-06 5.3E-11 55.4 7.0 47 71-119 3-49 (114)
103 cd04629 CBS_pair_16 The CBS do 98.3 1.6E-06 3.5E-11 55.7 6.0 48 70-119 2-49 (114)
104 cd04609 CBS_pair_PALP_assoc2 T 98.3 2.7E-06 5.9E-11 54.1 7.0 47 70-119 2-48 (110)
105 COG2905 Predicted signal-trans 98.3 8.5E-07 1.8E-11 72.7 5.5 58 53-120 213-270 (610)
106 cd04627 CBS_pair_14 The CBS do 98.3 2.2E-06 4.9E-11 56.2 6.7 47 70-118 2-49 (123)
107 cd04588 CBS_pair_CAP-ED_DUF294 98.3 3.8E-06 8.2E-11 53.7 7.4 47 70-119 2-48 (110)
108 PRK07807 inosine 5-monophospha 98.3 1.9E-06 4E-11 70.3 7.2 78 31-117 45-143 (479)
109 cd04631 CBS_pair_18 The CBS do 98.3 2.8E-06 6.1E-11 55.5 6.7 47 71-119 3-50 (125)
110 PTZ00314 inosine-5'-monophosph 98.3 1.6E-06 3.5E-11 70.8 6.6 59 53-118 158-216 (495)
111 cd04583 CBS_pair_ABC_OpuCA_ass 98.3 4.3E-06 9.4E-11 53.2 7.2 47 70-118 3-49 (109)
112 cd04803 CBS_pair_15 The CBS do 98.3 3E-06 6.6E-11 55.1 6.4 47 71-119 3-49 (122)
113 cd04586 CBS_pair_BON_assoc Thi 98.3 3E-06 6.6E-11 56.5 6.5 47 70-118 3-49 (135)
114 cd04598 CBS_pair_GGDEF_assoc T 98.3 3.3E-06 7.2E-11 54.7 6.3 56 53-117 60-118 (119)
115 cd04801 CBS_pair_M50_like This 98.3 3.7E-06 7.9E-11 54.3 6.5 48 70-119 2-50 (114)
116 cd04638 CBS_pair_25 The CBS do 98.3 3.8E-06 8.2E-11 53.6 6.5 54 54-117 52-105 (106)
117 cd04626 CBS_pair_13 The CBS do 98.3 4.5E-06 9.8E-11 53.5 6.8 46 71-118 3-48 (111)
118 PRK15094 magnesium/cobalt effl 98.3 2.6E-06 5.6E-11 65.3 6.5 56 55-120 134-189 (292)
119 cd02205 CBS_pair The CBS domai 98.3 3.7E-06 7.9E-11 52.9 6.2 53 56-117 60-112 (113)
120 cd04621 CBS_pair_8 The CBS dom 98.3 3.7E-06 8E-11 56.7 6.5 47 71-119 3-49 (135)
121 cd04639 CBS_pair_26 The CBS do 98.2 4.4E-06 9.5E-11 53.5 6.3 47 71-119 3-49 (111)
122 cd04609 CBS_pair_PALP_assoc2 T 98.2 3.9E-06 8.5E-11 53.3 6.1 53 54-117 57-109 (110)
123 cd04603 CBS_pair_KefB_assoc Th 98.2 5.6E-06 1.2E-10 53.5 6.8 46 71-118 3-48 (111)
124 cd04640 CBS_pair_27 The CBS do 98.2 5.1E-06 1.1E-10 54.9 6.7 45 71-117 3-47 (126)
125 cd04595 CBS_pair_DHH_polyA_Pol 98.2 7.6E-06 1.6E-10 52.4 7.3 47 70-119 3-49 (110)
126 cd04615 CBS_pair_2 The CBS dom 98.2 6.2E-06 1.3E-10 52.9 6.9 46 71-118 3-48 (113)
127 cd04612 CBS_pair_SpoIVFB_EriC_ 98.2 6.2E-06 1.3E-10 52.6 6.8 47 70-119 2-48 (111)
128 cd04637 CBS_pair_24 The CBS do 98.2 7.7E-06 1.7E-10 53.3 7.3 45 71-118 3-47 (122)
129 TIGR01302 IMP_dehydrog inosine 98.2 4.2E-06 9.2E-11 67.6 7.0 59 53-119 142-200 (450)
130 cd04587 CBS_pair_CAP-ED_DUF294 98.2 8.6E-06 1.9E-10 52.2 7.2 46 70-118 2-47 (113)
131 cd04634 CBS_pair_21 The CBS do 98.2 6.8E-06 1.5E-10 55.7 7.0 55 53-117 88-142 (143)
132 TIGR00393 kpsF KpsF/GutQ famil 98.2 4.1E-06 8.9E-11 62.6 6.4 58 54-119 155-212 (268)
133 cd04636 CBS_pair_23 The CBS do 98.2 4.8E-06 1E-10 55.4 6.0 47 71-119 3-49 (132)
134 TIGR03520 GldE gliding motilit 98.2 3.3E-06 7.1E-11 67.5 5.9 64 50-119 187-250 (408)
135 cd04635 CBS_pair_22 The CBS do 98.2 5.3E-06 1.2E-10 54.0 5.9 46 71-118 3-48 (122)
136 cd04602 CBS_pair_IMPDH_2 This 98.2 8.7E-06 1.9E-10 52.7 6.6 46 70-117 3-51 (114)
137 cd04607 CBS_pair_NTP_transfera 98.2 1.1E-05 2.3E-10 52.0 7.0 47 71-119 4-50 (113)
138 cd04634 CBS_pair_21 The CBS do 98.2 7.8E-06 1.7E-10 55.4 6.6 46 71-119 3-48 (143)
139 cd04800 CBS_pair_CAP-ED_DUF294 98.2 1.3E-05 2.7E-10 51.3 7.3 46 70-118 2-47 (111)
140 cd04584 CBS_pair_ACT_assoc Thi 98.2 7.9E-06 1.7E-10 53.0 6.3 47 70-118 2-48 (121)
141 PRK15094 magnesium/cobalt effl 98.2 3.8E-06 8.3E-11 64.4 5.5 63 50-119 63-126 (292)
142 cd04589 CBS_pair_CAP-ED_DUF294 98.2 1.4E-05 3.1E-10 51.2 7.3 46 71-119 3-48 (111)
143 cd04596 CBS_pair_DRTGG_assoc T 98.2 9.1E-06 2E-10 52.0 6.4 46 70-117 3-48 (108)
144 cd04585 CBS_pair_ACT_assoc2 Th 98.2 1E-05 2.3E-10 52.2 6.7 46 71-119 3-48 (122)
145 cd04611 CBS_pair_PAS_GGDEF_DUF 98.1 1.5E-05 3.2E-10 50.8 7.3 46 71-119 3-48 (111)
146 PRK05567 inosine 5'-monophosph 98.1 7.9E-06 1.7E-10 66.6 7.3 59 53-119 146-204 (486)
147 cd02205 CBS_pair The CBS domai 98.1 1.4E-05 3E-10 50.2 7.0 47 71-119 3-49 (113)
148 cd04598 CBS_pair_GGDEF_assoc T 98.1 1.2E-05 2.5E-10 52.1 6.5 47 70-119 2-49 (119)
149 cd04633 CBS_pair_20 The CBS do 98.1 1.3E-05 2.8E-10 52.0 6.8 46 71-119 3-48 (121)
150 cd04622 CBS_pair_9 The CBS dom 98.1 1.7E-05 3.6E-10 50.8 7.1 44 71-117 3-46 (113)
151 TIGR00393 kpsF KpsF/GutQ famil 98.1 8.1E-06 1.8E-10 61.0 6.3 50 53-111 219-268 (268)
152 COG2905 Predicted signal-trans 98.1 5.2E-06 1.1E-10 68.3 5.2 58 54-120 149-206 (610)
153 COG3620 Predicted transcriptio 98.1 1.2E-05 2.6E-10 56.9 6.3 57 52-120 128-184 (187)
154 cd04599 CBS_pair_GGDEF_assoc2 98.1 1.9E-05 4.1E-10 49.9 6.5 46 70-118 2-47 (105)
155 TIGR01303 IMP_DH_rel_1 IMP deh 98.1 1.2E-05 2.7E-10 65.4 7.0 77 30-116 43-140 (475)
156 COG0517 FOG: CBS domain [Gener 98.1 2.7E-05 5.9E-10 50.0 7.3 47 71-120 9-55 (117)
157 cd04802 CBS_pair_3 The CBS dom 98.1 2.8E-05 6.1E-10 49.8 7.3 46 71-119 3-48 (112)
158 cd04601 CBS_pair_IMPDH This cd 98.1 1.5E-05 3.2E-10 50.7 6.0 46 70-117 3-48 (110)
159 COG4109 Predicted transcriptio 98.1 1E-05 2.2E-10 63.5 5.8 81 31-118 158-245 (432)
160 cd04604 CBS_pair_KpsF_GutQ_ass 98.0 1.7E-05 3.8E-10 50.7 6.0 47 71-119 4-50 (114)
161 cd04594 CBS_pair_EriC_assoc_ar 98.0 3E-05 6.6E-10 49.4 6.8 45 71-118 3-47 (104)
162 TIGR03520 GldE gliding motilit 98.0 2.2E-05 4.9E-10 62.7 7.1 48 70-119 263-310 (408)
163 cd04620 CBS_pair_7 The CBS dom 98.0 4E-05 8.6E-10 49.4 6.8 46 71-119 3-49 (115)
164 PRK05567 inosine 5'-monophosph 98.0 2E-05 4.4E-10 64.2 6.5 47 69-117 95-141 (486)
165 PLN02274 inosine-5'-monophosph 98.0 2.4E-05 5.2E-10 64.2 6.9 49 67-117 106-157 (505)
166 cd04625 CBS_pair_12 The CBS do 98.0 5.5E-05 1.2E-09 48.4 7.2 46 71-119 3-48 (112)
167 PRK11573 hypothetical protein; 97.9 5.1E-05 1.1E-09 60.8 7.7 63 50-118 183-245 (413)
168 cd04591 CBS_pair_EriC_assoc_eu 97.9 4.1E-05 9E-10 49.3 6.0 47 71-119 4-53 (105)
169 TIGR01186 proV glycine betaine 97.9 4E-05 8.6E-10 60.5 6.9 56 55-120 303-358 (363)
170 TIGR01302 IMP_dehydrog inosine 97.9 2.6E-05 5.6E-10 63.1 5.9 49 67-117 86-137 (450)
171 PRK07107 inosine 5-monophospha 97.9 3.5E-05 7.6E-10 63.2 6.2 57 55-117 95-154 (502)
172 cd04606 CBS_pair_Mg_transporte 97.8 3.8E-05 8.2E-10 49.2 4.8 42 74-117 2-48 (109)
173 cd04638 CBS_pair_25 The CBS do 97.8 0.00011 2.4E-09 46.6 6.8 45 71-117 3-47 (106)
174 cd04610 CBS_pair_ParBc_assoc T 97.8 0.0001 2.2E-09 46.7 6.6 45 70-117 3-47 (107)
175 PTZ00314 inosine-5'-monophosph 97.8 6E-05 1.3E-09 61.8 6.6 50 67-116 102-152 (495)
176 TIGR00400 mgtE Mg2+ transporte 97.8 9.7E-05 2.1E-09 59.7 7.1 59 50-117 127-190 (449)
177 COG1253 TlyC Hemolysins and re 97.7 0.0001 2.2E-09 59.3 6.4 64 51-120 203-266 (429)
178 TIGR01137 cysta_beta cystathio 97.7 0.00012 2.5E-09 58.8 6.8 54 54-119 400-453 (454)
179 PRK10070 glycine betaine trans 97.6 0.00027 5.8E-09 56.5 7.1 47 71-120 347-393 (400)
180 KOG1764 5'-AMP-activated prote 97.5 0.00033 7.1E-09 55.7 6.5 48 71-120 312-359 (381)
181 KOG2550 IMP dehydrogenase/GMP 97.4 0.00017 3.7E-09 57.7 4.1 57 53-118 170-226 (503)
182 PRK11573 hypothetical protein; 97.3 0.00094 2E-08 53.6 6.7 49 70-120 263-311 (413)
183 COG1253 TlyC Hemolysins and re 97.1 0.002 4.3E-08 51.8 6.7 49 70-120 280-328 (429)
184 cd04592 CBS_pair_EriC_assoc_eu 97.0 0.0011 2.4E-08 44.9 3.8 31 70-100 87-117 (133)
185 KOG1764 5'-AMP-activated prote 97.0 0.0015 3.4E-08 51.9 5.1 47 71-119 239-285 (381)
186 COG4536 CorB Putative Mg2+ and 96.6 0.0082 1.8E-07 47.8 6.9 47 71-119 277-323 (423)
187 COG4535 CorC Putative Mg2+ and 96.5 0.0014 3E-08 49.3 1.8 63 52-120 65-127 (293)
188 KOG0474 Cl- channel CLC-7 and 96.3 0.0049 1.1E-07 51.8 4.2 45 71-117 700-744 (762)
189 TIGR03415 ABC_choXWV_ATP choli 96.3 0.012 2.5E-07 47.0 6.1 46 71-120 335-380 (382)
190 COG2239 MgtE Mg/Co/Ni transpor 96.3 0.012 2.6E-07 47.9 6.0 57 52-117 130-191 (451)
191 COG4536 CorB Putative Mg2+ and 96.1 0.0055 1.2E-07 48.8 3.0 67 49-121 195-261 (423)
192 KOG0475 Cl- channel CLC-3 and 95.2 0.052 1.1E-06 45.8 5.8 55 55-119 640-694 (696)
193 KOG0476 Cl- channel CLC-2 and 94.6 0.028 6.2E-07 48.3 2.9 61 53-120 587-647 (931)
194 COG4175 ProV ABC-type proline/ 94.6 0.088 1.9E-06 41.5 5.3 48 70-120 336-383 (386)
195 KOG2550 IMP dehydrogenase/GMP 94.6 0.032 7E-07 45.0 2.9 85 31-116 63-164 (503)
196 PRK10070 glycine betaine trans 94.6 0.14 3E-06 41.1 6.5 59 54-118 274-332 (400)
197 COG1125 OpuBA ABC-type proline 94.1 0.12 2.6E-06 39.7 5.0 42 75-118 267-308 (309)
198 KOG0475 Cl- channel CLC-3 and 94.0 0.18 4E-06 42.6 6.3 78 41-120 521-608 (696)
199 KOG0474 Cl- channel CLC-7 and 94.0 0.044 9.6E-07 46.3 2.6 61 52-119 580-643 (762)
200 COG4535 CorC Putative Mg2+ and 93.1 0.34 7.3E-06 36.8 5.8 50 68-119 139-188 (293)
201 TIGR01186 proV glycine betaine 91.1 1.1 2.5E-05 35.4 7.1 46 71-118 252-297 (363)
202 KOG0476 Cl- channel CLC-2 and 75.7 5.4 0.00012 35.0 4.6 50 69-121 810-859 (931)
203 PF05198 IF3_N: Translation in 62.0 20 0.00044 22.0 4.1 25 92-118 12-36 (76)
204 cd02958 UAS UAS family; UAS is 58.0 24 0.00053 22.5 4.2 60 51-119 40-107 (114)
205 PF14827 Cache_3: Sensory doma 56.3 14 0.00031 23.9 2.8 19 92-112 91-109 (116)
206 smart00594 UAS UAS domain. 51.8 31 0.00067 22.5 3.9 60 51-119 50-121 (122)
207 PF13365 Trypsin_2: Trypsin-li 44.1 22 0.00047 22.2 2.2 21 87-109 100-120 (120)
208 PF02743 Cache_1: Cache domain 43.9 37 0.00079 20.2 3.1 16 94-111 18-33 (81)
209 PF14044 NETI: NETI protein 43.2 33 0.00071 20.1 2.6 25 72-98 2-26 (57)
210 COG2216 KdpB High-affinity K+ 41.3 47 0.001 28.3 4.1 39 76-117 411-449 (681)
211 smart00481 POLIIIAc DNA polyme 34.0 71 0.0015 18.3 3.2 37 75-114 12-48 (67)
212 PF13185 GAF_2: GAF domain; PD 30.5 68 0.0015 20.4 3.0 39 71-112 79-120 (148)
213 PRK13482 DNA integrity scannin 29.7 66 0.0014 25.7 3.2 29 71-99 9-37 (352)
214 COG0106 HisA Phosphoribosylfor 29.4 79 0.0017 23.9 3.4 34 76-109 145-178 (241)
215 PRK00028 infC translation init 29.0 60 0.0013 23.2 2.6 27 91-119 18-44 (177)
216 TIGR00158 L9 ribosomal protein 28.6 66 0.0014 22.3 2.7 19 101-119 84-102 (148)
217 PF03948 Ribosomal_L9_C: Ribos 28.1 27 0.00058 21.9 0.6 19 102-120 24-42 (87)
218 COG1623 Predicted nucleic-acid 27.8 45 0.00098 26.2 1.9 29 71-99 15-43 (349)
219 PRK00137 rplI 50S ribosomal pr 27.3 1.2E+02 0.0027 20.8 3.9 20 101-120 84-103 (147)
220 CHL00199 infC translation init 26.8 70 0.0015 23.1 2.6 27 91-119 23-49 (182)
221 COG0290 InfC Translation initi 25.7 1.2E+02 0.0025 21.9 3.5 27 90-118 16-42 (176)
222 cd06404 PB1_aPKC PB1 domain is 25.0 84 0.0018 19.8 2.4 28 70-97 51-78 (83)
223 PF12282 H_kinase_N: Signal tr 24.8 96 0.0021 21.2 3.0 19 91-112 105-123 (145)
224 TIGR02196 GlrX_YruB Glutaredox 24.7 1.3E+02 0.0029 16.5 5.1 45 71-118 27-72 (74)
225 PF13098 Thioredoxin_2: Thiore 24.3 86 0.0019 19.4 2.5 36 82-119 73-112 (112)
226 TIGR02038 protease_degS peripl 23.3 70 0.0015 25.1 2.3 21 90-112 197-217 (351)
227 CHL00160 rpl9 ribosomal protei 23.2 69 0.0015 22.4 2.0 18 102-119 91-108 (153)
228 COG1956 GAF domain-containing 22.6 90 0.0019 22.2 2.5 17 94-113 118-134 (163)
229 PF00944 Peptidase_S3: Alphavi 22.0 88 0.0019 21.8 2.3 21 88-110 103-123 (158)
230 COG0241 HisB Histidinol phosph 21.2 1.8E+02 0.004 20.8 3.9 39 77-117 33-71 (181)
231 PRK10898 serine endoprotease; 21.2 83 0.0018 24.7 2.4 20 90-111 197-216 (353)
232 PF01590 GAF: GAF domain; Int 20.6 1.3E+02 0.0029 19.1 3.0 25 85-112 99-126 (154)
233 PF04459 DUF512: Protein of un 20.6 2.4E+02 0.0051 20.6 4.5 30 91-120 126-157 (204)
234 COG0828 RpsU Ribosomal protein 20.6 1.3E+02 0.0028 18.2 2.6 19 71-89 3-21 (67)
235 PF13673 Acetyltransf_10: Acet 20.1 2.2E+02 0.0048 17.3 4.3 30 80-112 32-61 (117)
236 PF11112 PyocinActivator: Pyoc 20.1 2.3E+02 0.0049 17.4 4.0 56 52-119 13-68 (76)
237 PF02196 RBD: Raf-like Ras-bin 20.0 1.5E+02 0.0032 17.7 2.8 20 71-90 14-33 (71)
No 1
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=99.40 E-value=2e-12 Score=75.35 Aligned_cols=56 Identities=27% Similarity=0.450 Sum_probs=52.0
Q ss_pred HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 56 v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
|+++|.++ ++++++++++.++++.|.+++++++||+| ++++++|++|.+|+++++.
T Consensus 1 v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~d--~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTPP-------PITVSPDDSLEEALEIMRKNGISRLPVVD--EDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBSS-------SEEEETTSBHHHHHHHHHHHTSSEEEEES--TTSBEEEEEEHHHHHHHHH
T ss_pred CeECCcCC-------CEEEcCcCcHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEHHHHHhhhh
Confidence 56788875 89999999999999999999999999999 7899999999999999875
No 2
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.99 E-value=1.6e-09 Score=81.22 Aligned_cols=62 Identities=29% Similarity=0.494 Sum_probs=57.3
Q ss_pred CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
|-....|+|+|+++ ++++..|+.+.||+++|..++++.|.|+| .+|+++||||+.|++..++
T Consensus 230 g~~~~kV~~~M~k~-------vitI~eDe~i~dAir~M~~~nVGRLlV~d--s~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 230 GNLDAKVSDYMRKN-------VITINEDEDIYDAIRLMNKNNVGRLLVTD--SNGKPVGIITRTDILTRIA 291 (294)
T ss_pred CCccccHHHHhccC-------CceEcCchhHHHHHHHHHhcCcceEEEEc--cCCcEEEEEehHHHHHHhh
Confidence 33467899999997 99999999999999999999999999998 8999999999999998864
No 3
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.94 E-value=2.4e-09 Score=69.60 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=50.2
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... +.++.+++++.+|+++|.+++.+.+||+| ++|+++|+||.+|+++
T Consensus 56 ~~v~~~~~~~-------~~~v~~~~~l~~al~~m~~~~~~~lpVvd--~~~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIVP-------VPIVYCDSKVTDLLRIFRETEPPVVAVVD--KEGKLVGTIYERELLR 110 (111)
T ss_pred cChhheeecC-------CcEECCCCcHHHHHHHHHHcCCCeEEEEc--CCCeEEEEEEhHHhhc
Confidence 4688998765 78999999999999999999999999998 6799999999999975
No 4
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.85 E-value=1.1e-08 Score=66.66 Aligned_cols=56 Identities=20% Similarity=0.391 Sum_probs=51.1
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.+|++.|.+++.+.+||++ ++|+++|+||.+|++.
T Consensus 58 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTRA-------VVSCRPGDLLHDVWQVMKQRGLKNIPVVD--ENARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeEEEEC--CCCcEEEEEEhHhhcc
Confidence 46789999875 78999999999999999999999999998 6789999999999874
No 5
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.82 E-value=9e-09 Score=67.78 Aligned_cols=55 Identities=27% Similarity=0.421 Sum_probs=50.3
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|.+. +.++.+++++.++++.|.+++.+.+||+| ++|+++|+||.+|+..
T Consensus 58 ~~v~dim~~~-------~~~v~~~~~l~~a~~~~~~~~~~~lpVvd--~~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRK-------PVTARPNDPLREALNLMHEHNIRTLPVVD--DDGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCC-------CCEECCcCcHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEEHHHhhc
Confidence 5688999875 78999999999999999999999999998 7899999999999864
No 6
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.79 E-value=1e-08 Score=72.18 Aligned_cols=58 Identities=28% Similarity=0.412 Sum_probs=52.6
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
..++..+|+.+ ++.|.|++++.+|+++|.+++++++||++ +++++|-||++++.++..
T Consensus 64 ~ita~~iM~sp-------vv~v~pdDsi~~vv~lM~~~g~SQlPVi~---~~k~VGsItE~~iv~~~l 121 (187)
T COG3620 64 RITAKTIMHSP-------VVSVSPDDSISDVVNLMRDKGISQLPVIE---EDKVVGSITENDIVRALL 121 (187)
T ss_pred eEeHhhhccCC-------eeEECchhhHHHHHHHHHHcCCccCceee---CCeeeeeecHHHHHHHHh
Confidence 45678888875 99999999999999999999999999997 699999999999998763
No 7
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.79 E-value=1.1e-08 Score=78.34 Aligned_cols=101 Identities=15% Similarity=0.214 Sum_probs=75.9
Q ss_pred HhhcCcchHHHHhccccccccCccceeeeeccccchhhhhhcCC-CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHH
Q 033339 8 FLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGF-ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKS 86 (121)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~ 86 (121)
+++|+...+...-++-+.+|+.+..++...+. +...+...| ...+++.+|+.+ +.++.++++..+.+-.
T Consensus 271 l~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~---~~p~qrlr~~~~~~vk~imt~~-------v~tv~pdtpa~~lvp~ 340 (382)
T COG3448 271 LQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR---PSPFQRLRFLRPPTVKGIMTTP-------VVTVRPDTPAVELVPR 340 (382)
T ss_pred HHHcCcccccccccccceeeeeeHHHHhhccC---cchHHHhhccCCCcccccccCc-------ceeecCCCcHHHHHHH
Confidence 45555555555666677777776666543322 122222222 456788888875 8999999999999999
Q ss_pred HHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 87 MTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 87 m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
+.+.+..++||+| ++|+++||||.+|++.+++
T Consensus 341 lad~g~H~lpvld--~~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 341 LADEGLHALPVLD--AAGKLVGIVSQTDLIAALY 372 (382)
T ss_pred hhcCCcceeeEEc--CCCcEEEEeeHHHHHHHHH
Confidence 9999999999999 8999999999999998764
No 8
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.78 E-value=1.6e-08 Score=64.93 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=42.0
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFK 117 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~ 117 (121)
+.++.+++++.+|+++|.+++++.+||++ ++ |+++|+||.+|++.
T Consensus 52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~~~giit~~d~~~ 97 (98)
T cd04618 52 LVSIHPERSLFDAALLLLKNKIHRLPVID--PSTGTGLYILTSRRILK 97 (98)
T ss_pred eEEeCCCCcHHHHHHHHHHCCCCEeeEEE--CCCCCceEEeehhhhhc
Confidence 57899999999999999999999999998 66 89999999999875
No 9
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.75 E-value=3.2e-08 Score=64.09 Aligned_cols=56 Identities=18% Similarity=0.365 Sum_probs=49.5
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCC--CcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~--~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... ++++.++ +++.+|+++|.+++.+.+||++ ++|+++|+||.+|+++
T Consensus 57 ~~~i~~~~~~~-------~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd--~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQP-------VVTLQESEIQDIFTALSLFRQHQIRHLPVLD--DQGQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCCC-------cEEEecccccCHHHHHHHHHHhCCceEEEEc--CCCCEEEEEEhHHhhc
Confidence 35788998764 7788877 7899999999999999999998 7799999999999986
No 10
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.74 E-value=3.2e-08 Score=64.84 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=51.3
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|... +.++.+++++.+++++|.+++.+.+||++ ++|+++|+||.+|++++
T Consensus 68 ~~~i~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~--~~g~~~Gvit~~di~~~ 124 (124)
T cd04600 68 PETVGDIMSPP-------VVTVRPDTPIAELVPLLADGGHHHVPVVD--EDRRLVGIVTQTDLIAA 124 (124)
T ss_pred cccHHHhccCC-------CeeeCCCCcHHHHHHHHHhcCCCceeEEc--CCCCEEEEEEhHHhhcC
Confidence 34688998765 88999999999999999999999999998 78999999999999753
No 11
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.74 E-value=3.5e-08 Score=64.59 Aligned_cols=59 Identities=27% Similarity=0.362 Sum_probs=50.4
Q ss_pred CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC---CeeEEEEeHHHHHH
Q 033339 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERGIFK 117 (121)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~---~~lvGiVt~~Di~~ 117 (121)
...++.++|.... ++.++.+++++.+++++|.++++..+||+| ++ ++++|+||.+|+.+
T Consensus 56 ~~~~~~~~~~~~~-----~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd--~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 56 QKVPVGVIMTRMP-----NITTTTPEESVLEAAKKLIEHQVDSLPVVE--KVDEGLEVIGRITKTNITK 117 (118)
T ss_pred cCCCHHHHhCCCC-----CcEEECCCCcHHHHHHHHHHcCCCEeeEEe--CCCccceEEEEEEhhheec
Confidence 3567889997511 278999999999999999999999999998 55 69999999999865
No 12
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.74 E-value=4.9e-08 Score=62.82 Aligned_cols=55 Identities=20% Similarity=0.349 Sum_probs=49.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.+|+++|.+++.+.+||++ +|+++|+||.+|+++
T Consensus 57 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~---~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 57 DTTVRAIMNPE-------PIVASPDDSIDEVRRLMVERHLRYLPVLD---GGTLLGVISFHDVAK 111 (112)
T ss_pred cCCHHHHhCCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEEE---CCEEEEEEEHHHhhc
Confidence 35799999765 78999999999999999999999999997 589999999999975
No 13
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=98.73 E-value=2.5e-08 Score=74.91 Aligned_cols=59 Identities=27% Similarity=0.386 Sum_probs=54.1
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhhC
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~~ 121 (121)
..++.++|+++ ++++.+++|+.+|.++|.++++++.||+| +++++|++|.+|+..++++
T Consensus 171 k~~V~~~~s~~-------~i~v~~d~tl~eaak~f~~~~i~GaPVvd---~dk~vGiit~~dI~~aia~ 229 (294)
T COG2524 171 KEKVKNLMSKK-------LITVRPDDTLREAAKLFYEKGIRGAPVVD---DDKIVGIITLSDIAKAIAN 229 (294)
T ss_pred cchhhhhccCC-------ceEecCCccHHHHHHHHHHcCccCCceec---CCceEEEEEHHHHHHHHHc
Confidence 46788999886 89999999999999999999999999997 5599999999999999864
No 14
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.72 E-value=5.1e-08 Score=63.23 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=50.3
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|..+ +.++.+++++.+|++.|.+++...+||++ + |+++|+||.+|++++
T Consensus 59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~-~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 59 RVNVYEIMTKP-------LISVSPDMDIKYCARLMERTNIRRAPVVE--N-NELIGIISLTDIFLA 114 (114)
T ss_pred ccCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCEeeEee--C-CEEEEEEEHHHhhcC
Confidence 35789999764 89999999999999999999999999998 5 999999999998753
No 15
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.72 E-value=5.6e-08 Score=62.86 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=50.2
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... +.++.+++++.++++.|.+++.+.+||++ ++|+++|+||.+|++.
T Consensus 58 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvit~~di~~ 112 (113)
T cd04607 58 DPVSEVMNRN-------PITAKVGSSREEILALMRERSIRHLPILD--EEGRVVGLATLDDLLS 112 (113)
T ss_pred CCHHHhhcCC-------CEEEcCCCCHHHHHHHHHHCCCCEEEEEC--CCCCEEEEEEhHHhcc
Confidence 5688999765 78999999999999999999999999998 7899999999999874
No 16
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.71 E-value=5.1e-08 Score=63.88 Aligned_cols=46 Identities=33% Similarity=0.456 Sum_probs=43.0
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++.++.+++++.++++.|.+++.+.+||++ ++|+++|+||.+|+++
T Consensus 74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~~~~~Givt~~di~~ 119 (120)
T cd04641 74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVD--ENKRVEGIISLSDILQ 119 (120)
T ss_pred CCeEEcCCCcHHHHHHHHHhcCccEEEEEC--CCCCEEEEEEHHHhhc
Confidence 478999999999999999999999999998 6799999999999875
No 17
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.69 E-value=6.6e-08 Score=63.61 Aligned_cols=45 Identities=20% Similarity=0.304 Sum_probs=42.3
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~ 116 (121)
++.++.+++++.+|++.|.+++.+.+||++ ++++++|+||.+|+.
T Consensus 77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~vGiit~~di~ 121 (123)
T cd04627 77 DVISINGDQPLIDALHLMHNEGISSVAVVD--NQGNLIGNISVTDVR 121 (123)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCceEEEEC--CCCcEEEEEeHHHhh
Confidence 388999999999999999999999999998 779999999999985
No 18
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.69 E-value=7.6e-08 Score=61.84 Aligned_cols=56 Identities=23% Similarity=0.366 Sum_probs=50.9
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.++++.|.+++...+||++ ++|+++|++|.+|+++
T Consensus 52 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTKN-------PITVNPKTSVASVAHMMIWEGIEMLPVVD--DNKKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEEc--CCCCEEEEEEHHHhhc
Confidence 35788998765 78999999999999999999999999998 7899999999999875
No 19
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.67 E-value=8.1e-08 Score=62.28 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=49.8
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC--CeeEEEEeHHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERGIFKA 118 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~--~~lvGiVt~~Di~~~ 118 (121)
.++.++|... +.++.+++++.+++++|.+++.+.+||++ ++ |+++|+||.+|++++
T Consensus 58 ~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd--~~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 58 SAVDEVATPP-------LLTVHPDEPLAHALDRMASRGLRQLPVVD--RGNPGQVLGLLTRENVLLA 115 (115)
T ss_pred ccHHHhccCC-------ceEECCCCCHHHHHHHHHHcCCceeeEEe--CCCCCeEEEEEEhHHhhcC
Confidence 4588888765 88999999999999999999999999998 55 799999999999763
No 20
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.66 E-value=1.1e-07 Score=61.22 Aligned_cols=57 Identities=26% Similarity=0.394 Sum_probs=51.5
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|... +.++.+++++.++++.|.+++.+.+||++ ++++++|+||.+|++++
T Consensus 52 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDTD-------VISVSADDDQEEVARLFEKYDLLALPVVD--EEGRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCCC-------CeEEcCCCCHHHHHHHHHHcCCceeeeEC--CCCcEEEEEEhHHhhhh
Confidence 45688888765 88999999999999999999999999998 78999999999999875
No 21
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.66 E-value=1.2e-07 Score=60.91 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=43.3
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~ 119 (121)
++++++++++.+|.+.|.+++++++||++ ++ |+++|+||.+|+.+.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWD--SRKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEe--CCCCEEEEEEEHHHHhhhe
Confidence 78999999999999999999999999998 54 8999999999998753
No 22
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.66 E-value=9.8e-08 Score=62.56 Aligned_cols=56 Identities=34% Similarity=0.548 Sum_probs=50.3
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
.++.++|.+. ++++.+++++.++++.|.+.+.+.+||++ ++|+++|+||.+|++++
T Consensus 70 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~~Gvit~~di~~~ 125 (125)
T cd04631 70 EPVRSIMTRN-------VITITPDDSIKDAAELMLEKRVGGLPVVD--DDGKLVGIVTERDLLKA 125 (125)
T ss_pred cCHHHHhcCC-------ceEeCCCCcHHHHHHHHHHcCCceEEEEc--CCCcEEEEEEHHHhhcC
Confidence 4688888764 89999999999999999999999999998 66999999999999863
No 23
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.65 E-value=9.5e-08 Score=73.60 Aligned_cols=56 Identities=14% Similarity=0.321 Sum_probs=51.4
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|+++ +.++.+++++.+|+++|.+++++.+||++ +++++|+||.+|++++
T Consensus 268 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv~---~~~lvGiit~~dil~~ 323 (326)
T PRK10892 268 QASIADVMTPG-------GIRVRPGILAVDALNLMQSRHITSVLVAD---GDHLLGVLHMHDLLRA 323 (326)
T ss_pred cCCHHHhcCCC-------CEEECCCCCHHHHHHHHHHCCCcEEEEee---CCEEEEEEEhHHhHhc
Confidence 46799999875 89999999999999999999999999996 6899999999999875
No 24
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.64 E-value=1.1e-07 Score=61.68 Aligned_cols=56 Identities=30% Similarity=0.488 Sum_probs=50.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|.+. +.++.+++++.++++.|.+.+.+.+||++ ++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRD-------PITVSPDASVEEAAELMLERKISGLPVVD--DQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCC-------CeEeCCCCcHHHHHHHHHHcCCCceeEEC--CCCcEEEEEEHHHhhh
Confidence 35688888775 88999999999999999999999999998 6799999999999986
No 25
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.64 E-value=1.2e-07 Score=60.89 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=50.5
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... ..++.+++++.+++++|.+++.+.+||++ ++++++|+||..|+++
T Consensus 59 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTRN-------PKTIDPDALAAEALELMEENKITALPVVD--DNGRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhccC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEC--CCCCEEEEEEHHHhhc
Confidence 4789999875 78999999999999999999999999998 6899999999999975
No 26
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.64 E-value=1.3e-07 Score=60.29 Aligned_cols=55 Identities=24% Similarity=0.455 Sum_probs=49.8
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..+.++|... +.++.+++++.++++.|.+++...+||++ ++|+++|+++..|+++
T Consensus 52 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSKD-------LVVAVPEMDIMDAARVMFRTGISKLPVVD--ENNNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCCC-------CeEECCCCCHHHHHHHHHHhCCCeEeEEC--CCCeEEEEEEHHHhhc
Confidence 4688888764 78899999999999999999999999998 7899999999999875
No 27
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.64 E-value=1.1e-07 Score=77.72 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=53.3
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|++.+ +++++.+++++.+|+++|.+++++.+||+| ++++++|+||.+|+++.
T Consensus 160 ~~~V~dIMt~~~-----~~itv~~d~~l~eAl~lM~e~~i~~LPVVD--~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFE-----KLVTANEGTTLKEANDIIWDHKLNTLPIVD--KNGNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCC-----CeEEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEhHHHHhc
Confidence 568999999632 288999999999999999999999999998 78999999999999875
No 28
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.63 E-value=8.2e-08 Score=61.78 Aligned_cols=55 Identities=22% Similarity=0.326 Sum_probs=49.9
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... +.++.+++++.++++.|.+++.+.+||++ ++++++|+||.+|++.
T Consensus 58 ~~v~~i~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 58 TLVERVMTPN-------PVCATSDTPVLEALHLMVQGKFRHLPVVD--KSGQVVGLLDVTKLTH 112 (113)
T ss_pred CCHHHhcCCC-------CeEEcCCCCHHHHHHHHHHcCCCcccEEC--CCCCEEEEEEHHHhcc
Confidence 5788998764 78999999999999999999999999998 6799999999999875
No 29
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.63 E-value=1.7e-07 Score=75.03 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=59.5
Q ss_pred chhhhhhcCC------------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEE
Q 033339 42 SSARMEEHGF------------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109 (121)
Q Consensus 42 ~~~~~~~~g~------------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGi 109 (121)
.++|+...|+ ...+++++|.++ +.++.+++++.++++.|.+++++.+||+| ++++++|+
T Consensus 311 ~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd--~~~~~~Gi 381 (454)
T TIGR01137 311 NDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPA-------PVTVHPTETVGDAIEILREYGFDQLPVVT--EAGKVLGS 381 (454)
T ss_pred ChHHHHhcCCcccccccHHHHhccCCHHHhCcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCeEEEE
Confidence 4679888776 345788888765 89999999999999999999999999998 77999999
Q ss_pred EeHHHHHHHh
Q 033339 110 ITERGIFKAC 119 (121)
Q Consensus 110 Vt~~Di~~~~ 119 (121)
||.+|+++.+
T Consensus 382 vt~~dl~~~~ 391 (454)
T TIGR01137 382 VTLRELLSAL 391 (454)
T ss_pred EEHHHHHHHH
Confidence 9999998754
No 30
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.63 E-value=1.2e-07 Score=72.81 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=52.1
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|.++ +.++.+++++.+|++.|.+++...+||+| ++|+++|+||.+|++++
T Consensus 262 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 262 TTPVNEAMTRG-------GTTLQAQSRAIDAKEILMKRKITAAPVVD--ENGKLTGAINLQDFYQA 318 (321)
T ss_pred CCcHHHhcCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEHHHHHhc
Confidence 45688999875 78999999999999999999999999998 77899999999999875
No 31
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.62 E-value=1.5e-07 Score=61.45 Aligned_cols=57 Identities=33% Similarity=0.550 Sum_probs=50.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|..+ +.++.+++++.++++.|.+++.+.+||++ ++|+++|++|.+|++++
T Consensus 66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 66 SPTVEKIMSTP-------VYSVTPDDSIATAVELMLEHDIGRLPVVN--EKDQLVGIVDRHDVLKA 122 (122)
T ss_pred cCcHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeeeEEc--CCCcEEEEEEhHHhhcC
Confidence 45688888764 88999999999999999999999999998 67999999999999763
No 32
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.61 E-value=1.8e-07 Score=61.03 Aligned_cols=56 Identities=25% Similarity=0.506 Sum_probs=50.5
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.++++.|.+++.+.+||++ ++|+++|++|..|+++
T Consensus 66 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 66 DVPVAEVMKTD-------VLTVTPDTPLREAAEIMVENKIGCLPVVD--DKGTLVGIITRSDFLR 121 (122)
T ss_pred CcCHHHhhCCC-------CeEeCCCCcHHHHHHHHHHcCCCeEEEEc--CCCCEEEEEEHHHhhc
Confidence 45788888765 88999999999999999999999999998 6689999999999975
No 33
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.61 E-value=1.4e-07 Score=60.78 Aligned_cols=55 Identities=24% Similarity=0.408 Sum_probs=49.8
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|..+ +.++.+++++.++++.|.+++.+.+||++ + |+++|+||.+|+++
T Consensus 59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~Gvit~~di~~ 113 (114)
T cd04629 59 VATVRDIMTTE-------VLTVSPDDSIVDLAQLMLKAKPKRYPVVD--D-GKLVGQISRRDVLR 113 (114)
T ss_pred CccHHHHhccC-------ceEECCCCcHHHHHHHHHHhCCCccCEEE--C-CEEEEEEEHHHHhc
Confidence 45788998765 78999999999999999999999999998 5 89999999999975
No 34
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.61 E-value=2.2e-07 Score=60.82 Aligned_cols=48 Identities=17% Similarity=0.276 Sum_probs=44.3
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.+|++.|.+++.+.+||++ ++|+++|++|.+|++.+.
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~--~~~~~~Giv~~~dl~~~~ 49 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVD--ENGKVVDVYSRFDVINLA 49 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEEC--CCCeEEEEEeHHHHHHHH
Confidence 378999999999999999999999999998 789999999999998754
No 35
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=1.6e-07 Score=60.31 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=50.3
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.+|++.|.+++...+||++ ++|+++|++|.+|+.+
T Consensus 55 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~G~it~~dl~~ 110 (111)
T cd04639 55 DAPVRGVMRRD-------FPTVSPSATLDAVLRLMQQGGAPAVPVVD--GSGRLVGLVTLENVGE 110 (111)
T ss_pred CCcHHHHhcCC-------CcEECCCCcHHHHHHHHHhcCCceeeEEc--CCCCEEEEEEHHHhhc
Confidence 35788998765 88999999999999999999999999998 6699999999999875
No 36
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.60 E-value=1.8e-07 Score=61.85 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=43.0
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++.++.+++++.+|+++|.+++.+.+||++ ++++++|+||.+|+++
T Consensus 80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd--~~~~~~Giit~~dil~ 125 (126)
T cd04642 80 PLITCTPSSTLKEVITKLVANKVHRVWVVD--EEGKPIGVITLTDIIS 125 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHhCCcEEEEEC--CCCCEEEEEEHHHHhc
Confidence 388999999999999999999999999998 6799999999999875
No 37
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.59 E-value=1.8e-07 Score=59.54 Aligned_cols=54 Identities=22% Similarity=0.232 Sum_probs=48.4
Q ss_pred cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++.++|.+. +.++.+++++.++++.|.+++.+.+||++ ++++++|+||.+|+++
T Consensus 52 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 52 CCGDHAEPF-------KVTVSVDDDLRIVLSRMFAHDMSWLPCVD--EDGRYVGEVTQRSIAD 105 (106)
T ss_pred chhhhcccC-------CEEECCCCCHHHHHHHHHHCCCCeeeEEC--CCCcEEEEEEHHHhhc
Confidence 577888664 67899999999999999999999999998 7789999999999875
No 38
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.59 E-value=1.3e-07 Score=61.26 Aligned_cols=58 Identities=19% Similarity=0.432 Sum_probs=49.8
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|.... ++.++.+++++.+|++.|.+++.+.+||++ ++++++|++|.+|+++
T Consensus 56 ~~~v~~~~~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~--~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 56 QTTVIQVMTPAA-----KLVTVLSEESLAEVLKLLEEQGLDELAVVE--DSGQVIGLITEADLLR 113 (114)
T ss_pred ccchhhhhcccc-----cceEECCCCcHHHHHHHHHHCCCCeeEEEc--CCCcEEEEEeccceec
Confidence 457888887531 157899999999999999999999999998 6789999999999864
No 39
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.59 E-value=2.5e-07 Score=59.54 Aligned_cols=57 Identities=21% Similarity=0.432 Sum_probs=50.9
Q ss_pred CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
...++.++|... +.++.+++++.++++.|.+++...+||++ ++|+++|++|..|+++
T Consensus 56 ~~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 56 KDAKVREVMNSP-------VITIDANDSIAKARWLMSNNNISRLPVLD--DKGKVGGIVTEDDILR 112 (113)
T ss_pred cCCcHHHhccCC-------ceEECCCCcHHHHHHHHHHcCCCeeeEEC--CCCeEEEEEEHHHhhc
Confidence 346788998765 88999999999999999999999999998 7789999999999875
No 40
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.59 E-value=1.5e-07 Score=59.94 Aligned_cols=57 Identities=14% Similarity=0.346 Sum_probs=48.5
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
.+..|++... .+.++.+++++.+|+++|.+++.+.+||++ ++|+++|+||.+|++++
T Consensus 40 v~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~~~~Giit~~di~~~ 96 (96)
T cd04614 40 ITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPIIN--GNDKLIGLLRDHDLLKP 96 (96)
T ss_pred EEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEEC--CCCcEEEEEEHHHhhcC
Confidence 3556666543 278999999999999999999999999998 67999999999999763
No 41
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.58 E-value=2.2e-07 Score=59.24 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=49.9
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... +.++.+++++.++++.|.+++...+||++ ++|+++|++|.+|+++
T Consensus 54 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~vv~--~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 54 KSLEDIMLED-------VFTVQPDASLRDVLGLVLKRGPKYVPVVD--EDGKLVGLITRSSLVD 108 (109)
T ss_pred CcHhHhhcCC-------ceEECCCCcHHHHHHHHHHcCCceeeEEC--CCCeEEEEEehHHhhc
Confidence 5688888765 78999999999999999999999999998 7899999999999874
No 42
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=98.58 E-value=2.1e-07 Score=75.05 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=53.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
..+++++|++. ++++.+++++.+|++.|.+++...+||+| ++|+++|+||.+|+++.+.
T Consensus 194 ~~~v~~im~~~-------~~~v~~~~~~~eal~~m~~~~~~~lpVVD--~~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 194 EEILSSIMRSS-------VFSIVGVNDQEEVARLIQKYDFLAVPVVD--NEGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred CCcHHHHhCCC-------CeeECCCCCHHHHHHHHHHcCCCEEeEEc--CCCeEEEEEEHHHHHHHHH
Confidence 45789999875 78999999999999999999999999998 7899999999999998764
No 43
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.58 E-value=2.6e-07 Score=59.12 Aligned_cols=56 Identities=23% Similarity=0.533 Sum_probs=50.5
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|.+. ++++.+++++.++++.|.+.+.+.+||++ ++|+++|+||.+|+++
T Consensus 55 ~~~v~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~--~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSSP-------LLTVPADTSLYDARQLMREHGIRHLVVVD--DDGELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCCC-------ceEECCCCCHHHHHHHHHHcCCeEEEEEC--CCCcEEEEEEhHHhhc
Confidence 46788998765 88999999999999999999999999998 6799999999999875
No 44
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.57 E-value=2.2e-07 Score=60.28 Aligned_cols=55 Identities=16% Similarity=0.319 Sum_probs=48.0
Q ss_pred ccHHHHhhhcCCCCCCceEEEcC--CCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~--~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.+++++|... ..++.. ++++.++++.|.+++.+.+||++ ++++++|+||.+|+++
T Consensus 57 ~~v~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~--~~~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTPR-------EVLVVAPTGITLEEANEILRESKKGKLPIVN--DDGELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCCC-------ceEEECCCCCCHHHHHHHHHhcCCCceeEEC--CCCeEEEEEEHHHhhc
Confidence 4688999775 556655 99999999999999999999998 7899999999999875
No 45
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.57 E-value=2.9e-07 Score=62.15 Aligned_cols=55 Identities=29% Similarity=0.473 Sum_probs=49.6
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|.+. +..+.+++++.++++.|.+++.+.+||++ + |+++|+||.+|+++
T Consensus 80 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~-~~~~Gvit~~di~~ 134 (135)
T cd04621 80 PLVAEDIMTEE-------IITVSPNDDVVDAAKLMLEANISGLPVVD--N-DNIVGVITKTDICR 134 (135)
T ss_pred cccHHHhcCCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEEe--C-CEEEEEEEHHHHhh
Confidence 34789999765 78999999999999999999999999997 4 89999999999875
No 46
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.57 E-value=2.3e-07 Score=61.35 Aligned_cols=57 Identities=26% Similarity=0.518 Sum_probs=49.4
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|..+ ++++.+++++.++++.|.+.+...+||++++++++++|+||.+|+++
T Consensus 71 ~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 71 LPVYDAMSSP-------VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred CcHHHHhcCC-------CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 4688888765 88999999999999999999999999995224689999999999875
No 47
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.57 E-value=1.5e-07 Score=62.26 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=47.1
Q ss_pred cccHHHHhhhcCCCCCCceEEE----cCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWC----TTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v----~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~ 117 (121)
..++.++|.+... ...+ .+++++.++++.|.+++.+.+||+| ++ |+++|+||.+|+++
T Consensus 63 ~~~v~~im~~~~~-----~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd--~~~~~~~G~it~~di~~ 125 (126)
T cd04640 63 ELTVADVMTPKED-----LKALDLEELENASVGDVVETLKASGRQHALVVD--REHHQIRGIISTSDIAR 125 (126)
T ss_pred heEHHHhcCchhh-----hccccHHHhccCcHHHHHHHHHHCCCceEEEEE--CCCCEEEEEEeHHHHhh
Confidence 4568999976511 2233 3688999999999999999999998 55 79999999999875
No 48
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=98.57 E-value=2.4e-07 Score=71.33 Aligned_cols=60 Identities=20% Similarity=0.365 Sum_probs=51.4
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
..+++++|.+.. +++++++++++.+|++.|.+++.+.+||++ ++|+++|+||.+|+.+.+
T Consensus 201 ~~~V~dim~~~~-----~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd--~~g~lvGivt~~Dl~~~~ 260 (326)
T PRK10892 201 LLRVSDIMHTGD-----EIPHVSKTASLRDALLEITRKNLGMTVICD--DNMKIEGIFTDGDLRRVF 260 (326)
T ss_pred cCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHhcCCCeEEEEc--CCCcEEEEEecHHHHHHH
Confidence 346899998611 289999999999999999999999989988 789999999999998654
No 49
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.57 E-value=7.3e-08 Score=64.16 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=49.6
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHH---------hcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT---------QHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~---------~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
..++.++|.++ +.++.+++++.++.+++. +.+...+||++ ++|+++||||.+|+++++
T Consensus 58 ~~~v~~im~~~-------~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 58 SDPVSKALYKQ-------FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE--KQEKPIGIVTKIDLLSYI 124 (124)
T ss_pred CCcHHHHhhcc-------ceecCCCCCHHHHHhhcccCCceEEEeccccccccccc--cccceEEEEehhHhhhhC
Confidence 57899999886 889999999999999653 33677888887 679999999999999763
No 50
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.56 E-value=3.5e-07 Score=62.15 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=44.2
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.+|++.|.+++++.+||+| ++|+++|+||.+|+++++
T Consensus 3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD--~~g~l~Givt~~Dl~~~~ 49 (133)
T cd04592 3 YIKVSPTTTLKEALNLMLDEKQSCVLVVD--SDDFLEGILTLGDIQRFL 49 (133)
T ss_pred ceEECCCCCHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEEHHHHHHHH
Confidence 78999999999999999999999999998 789999999999998765
No 51
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.56 E-value=3.4e-07 Score=58.88 Aligned_cols=55 Identities=24% Similarity=0.425 Sum_probs=49.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|.++ +..+.+++++.++++.|.+++.+.+||++ +++++|+||.+|+++
T Consensus 56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATFP-------LITVDPDDFLFNALLLMTRHRIHRVVVRE---GGEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCCC-------cEEECCCCcHHHHHHHHHHhCccEEEEee---CCEEEEEEEhHHhhc
Confidence 45788999765 88999999999999999999999999997 589999999999875
No 52
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=98.56 E-value=9.1e-08 Score=73.41 Aligned_cols=57 Identities=30% Similarity=0.488 Sum_probs=53.0
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..+..|||++. ++++++++++.+|.+.|.++++..+||+| ++.+++||||.+|+...
T Consensus 244 ~LtcadIMSrd-------Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d--~~~rl~GiVt~~dl~~~ 300 (382)
T COG3448 244 ELTCADIMSRD-------VVTVSTDTSIDHARKLLQEHRIKALPVLD--EHRRLVGIVTQRDLLKH 300 (382)
T ss_pred cccHHHhcCcc-------ceecCCcCChHHHHHHHHHcCcccccccc--cccceeeeeeHHHHhhc
Confidence 56788999987 99999999999999999999999999999 88999999999999873
No 53
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.56 E-value=3.5e-07 Score=58.05 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=48.9
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF 116 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~ 116 (121)
..++.++|... +.++.+++++.++++.|.+++.+.+||++ + |+++|+||.+|++
T Consensus 50 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~G~it~~~l~ 103 (105)
T cd04599 50 NRLVADAMTRE-------VVTISPEASLLEAKRLMEEKKIERLPVLR--E-RKLVGIITKGTIA 103 (105)
T ss_pred cCCHHHHccCC-------CEEECCCCCHHHHHHHHHHcCCCEeeEEE--C-CEEEEEEEHHHhc
Confidence 35688898765 88999999999999999999999999998 5 9999999999986
No 54
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.56 E-value=2.2e-07 Score=59.96 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=47.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|.+. +.++.+++++.+|++.|.+.+ .+||++ ++++++|++|.+|++++
T Consensus 62 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~--~~~Vv~--~~~~~~Gvit~~dil~~ 116 (116)
T cd04643 62 DLKVIDVMNTD-------VPVIIDDADIEEILHLLIDQP--FLPVVD--DDGIFIGIITRREILKA 116 (116)
T ss_pred CCcHHHHhcCC-------CceecCCCCHHHHHHHHhcCC--ceeEEe--CCCeEEEEEEHHHhhcC
Confidence 35788898875 889999999999999998865 599998 78999999999999763
No 55
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.56 E-value=2.6e-07 Score=59.02 Aligned_cols=56 Identities=23% Similarity=0.429 Sum_probs=48.4
Q ss_pred cccHHHHhhhcCCCCCCceEEEcC-CCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~-~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +..+.+ ++++.++++.|.+++.+.+||++ ++++++|+||.+|+++
T Consensus 53 ~~~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTPE-------NLLTTVEGTSLEEALELLHEHKIEKLPVVD--DEGKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhcccC-------ceEEecCCCCHHHHHHHHHHhCCCeeeEEc--CCCCEEEEEEhhhhhc
Confidence 35788999764 455566 99999999999999999999998 6799999999999875
No 56
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.55 E-value=2.5e-07 Score=59.46 Aligned_cols=55 Identities=29% Similarity=0.450 Sum_probs=49.7
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... +.++.+++++.++++.|.+++.+.+||++ ++|+++|++|..|+++
T Consensus 58 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTRG-------VVTVTEDDDVDEAARLMREHQVRRLPVVD--DDGRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccCC-------ccEECCCCCHHHHHHHHHHcCCCeeeEEC--CCCcEEEEEEHHHhhc
Confidence 3588999775 78999999999999999999999999998 6799999999999875
No 57
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.55 E-value=3.8e-07 Score=58.52 Aligned_cols=55 Identities=18% Similarity=0.422 Sum_probs=50.0
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|.+. +.++.+++++.++++.|.+++.+.+||++ +|+++|+||..|+++
T Consensus 55 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Gvvt~~di~~ 109 (110)
T cd04595 55 HAPVKDYMSTD-------VVTVPPDTPLSEVQELMVEHDIGRVPVVE---DGRLVGIVTRTDLLR 109 (110)
T ss_pred cCcHHHHhcCC-------CEEECCCCcHHHHHHHHHHcCCCeeEEEe---CCEEEEEEEhHHhhc
Confidence 46789999875 78999999999999999999999999996 689999999999875
No 58
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.55 E-value=3.8e-07 Score=58.54 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=49.8
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|..+ ++++.+++++.++++.|.+++.+.+||++ + |+++|++|.+|+++
T Consensus 56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTAP-------PITIPPDATVFEALLLMLERGIHHLPVVD--D-GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCCC-------CeEECCCCcHHHHHHHHHHcCCCeeeEeE--C-CEEEEEEEHHHhhc
Confidence 35788998765 88999999999999999999999999998 5 99999999999875
No 59
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.55 E-value=3.4e-07 Score=58.68 Aligned_cols=55 Identities=31% Similarity=0.619 Sum_probs=49.7
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... +.++.+++++.++++.|.+.+.+.+||++ ++|+++|+||.+|+++
T Consensus 55 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 55 AKVKDVMTKD-------VITIDEDEQLYDAIRLMNKHNVGRLIVTD--DEGRPVGIITRTDILR 109 (110)
T ss_pred cCHHHHhcCC-------ceEECCCCCHHHHHHHHHhcCCCEEEEEC--CCCCEEEEEEhHHhhc
Confidence 5688888754 89999999999999999999999999998 6799999999999875
No 60
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.55 E-value=3.2e-07 Score=58.87 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=47.2
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..+.++|. . +.++.+++++.++++.|.+++.+.+||++ ++|+++|+||.+|+++
T Consensus 57 ~~~~~~~~-~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvit~~di~~ 110 (111)
T cd04590 57 LDLRDLLR-P-------PLFVPESTPLDDLLEEMRKERSHMAIVVD--EYGGTAGLVTLEDILE 110 (111)
T ss_pred CCHHHHhc-C-------CeecCCCCcHHHHHHHHHhcCCcEEEEEE--CCCCEEEEeEHHHhhc
Confidence 35666664 3 78999999999999999999999999998 7799999999999864
No 61
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=3.6e-07 Score=58.76 Aligned_cols=54 Identities=20% Similarity=0.499 Sum_probs=48.8
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|.+. +.++.+++++.+|++.|.+++.+.+||++ + |+++|+||..|++.
T Consensus 57 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~G~it~~di~~ 110 (111)
T cd04626 57 KKVFNIVSQD-------VFYVNEEDTIDEALDIMREKQIGRLPVVD--D-NKLIGVVRTKDILD 110 (111)
T ss_pred CcHHHHhcCC-------cEEEcCCCcHHHHHHHHHHcCCCeeeEeE--C-CEEEEEEEhHHhcc
Confidence 4688888765 78999999999999999999999999998 5 89999999999864
No 62
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.54 E-value=3.8e-07 Score=58.38 Aligned_cols=55 Identities=31% Similarity=0.422 Sum_probs=49.5
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.++++.|.+.+...+||++ + ++++|+||.+|+++
T Consensus 58 ~~~~~~~~~~~-------~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~--~-~~~~Gvit~~di~~ 112 (113)
T cd04623 58 DTPVSEIMTRN-------VITVTPDDTVDEAMALMTERRFRHLPVVD--G-GKLVGIVSIGDVVK 112 (113)
T ss_pred ccCHHHhcCCC-------cEEECCCCcHHHHHHHHHHcCCCEeEEEe--C-CEEEEEEEHHHhhc
Confidence 35788999764 88999999999999999999999999998 4 99999999999975
No 63
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.54 E-value=3.9e-07 Score=58.57 Aligned_cols=55 Identities=20% Similarity=0.415 Sum_probs=48.8
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|.+. +.++.+++++.+++++|.+++.+.+||++ ++ +++|+||.+|+++
T Consensus 57 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 57 EVPVGEVMSTP-------LITIDPNASLNEAAKLMAKHGIKRLPVVD--DD-ELVGIVTTTDIVM 111 (112)
T ss_pred cCCHHHhcCCC-------cEEECCCCCHHHHHHHHHHcCCCeeEEee--CC-EEEEEEEhhhhhc
Confidence 45788998764 88999999999999999999999999997 44 9999999999874
No 64
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.53 E-value=3.5e-07 Score=74.42 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=52.5
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
.++.++|+.. ++++.+++++.+|+++|.+++++.+||+| ++++++|+||.+|+++..
T Consensus 148 ~~V~diMt~~-------~itV~~d~sL~eAl~lM~~~~i~~LPVVD--~~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 148 TQVRDVMSTD-------LVTLPAGTDPREAFDLLEAARVKLAPVVD--ADGRLVGVLTRTGALRAT 204 (479)
T ss_pred CCHHHhccCC-------ceEECCCCcHHHHHHHHHhcCCCEEEEEc--CCCeEEEEEEHHHHHHHh
Confidence 5688999875 89999999999999999999999999998 789999999999999864
No 65
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.53 E-value=3e-07 Score=58.95 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=50.5
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC-CCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~-~~~lvGiVt~~Di~~ 117 (121)
.++.++|.+. +.++.+++++.++++.|.+.+.+.+||++ + +++++|++|.+|++.
T Consensus 58 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 58 VVASDIMTKP-------PVVVYPEDSLEDALKKFEDSDYEQLPVVD--DDPGKLLGILSRSDLLS 113 (114)
T ss_pred EEHHHhccCC-------CcEEcCCCCHHHHHHHHhhCCccEeeEEe--CCCCEEEEEEEhHHhhc
Confidence 6788999875 78999999999999999999999999998 6 689999999999875
No 66
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.52 E-value=3.1e-07 Score=75.38 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=53.4
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
.+++++|.++ +.++++++++.+|++.|.+++++.+||+| ++|+++|+||.+|+.+.+.
T Consensus 68 ~~V~dim~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~l~Givt~~di~~~~~ 125 (546)
T PRK14869 68 PQVRDLEIDK-------PVTVSPDTSLKEAWNLMDENNVKTLPVVD--EEGKLLGLVSLSDLARAYM 125 (546)
T ss_pred CcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCEEEEEEEHHHHHHHHH
Confidence 5889999875 89999999999999999999999999998 7899999999999988653
No 67
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.52 E-value=3.9e-07 Score=58.03 Aligned_cols=47 Identities=30% Similarity=0.331 Sum_probs=43.4
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
+++++.+++++.+|++.|.+++++.+||+| ++|+++|++|.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLD--DDGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEEC--CCCCEEEEEEHHHHhcC
Confidence 378999999999999999999999999998 78999999999998764
No 68
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.52 E-value=3.9e-07 Score=58.79 Aligned_cols=53 Identities=23% Similarity=0.411 Sum_probs=48.3
Q ss_pred cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHh-cCCCEEEEEeCCCCC-eeEEEEeHHHHH
Q 033339 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-HNVGALVVVKPGEQK-SVAGIITERGIF 116 (121)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~-~~~~~lpVvd~~~~~-~lvGiVt~~Di~ 116 (121)
++.++|..+ +.++.++.++.++.+.|.+ ++++.+||++ +++ +++|++|.+|++
T Consensus 63 ~v~~v~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~--~~~~~lvGivt~~di~ 117 (117)
T COG0517 63 PVKEVMTKP-------VVTVDPDTPLEEALELMVERHKIRRLPVVD--DDGGKLVGIITLSDIL 117 (117)
T ss_pred cHHHhccCC-------cEEECCCCCHHHHHHHHHHHcCcCeEEEEE--CCCCeEEEEEEHHHcC
Confidence 588999975 8999999999999999999 7999999998 675 999999999973
No 69
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=98.52 E-value=3.7e-07 Score=74.99 Aligned_cols=57 Identities=23% Similarity=0.315 Sum_probs=53.0
Q ss_pred cccHHHHhh-hcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~-~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..+++++|+ ++ +.++++++++.++.+.|.++++..+||+| ++|+++|+||.+|+++.
T Consensus 245 ~~~V~~iM~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~PVvd--~~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 245 SIPVSYIMTTED-------LVTFSKDDYLEDVKEVMLKSRYRSYPVVD--EDGKVVGVISRYHLLSP 302 (546)
T ss_pred CCCHHHhccCCC-------cEEECCCCcHHHHHHHHHhcCCCceEEEc--CCCCEEEEEEHHHhhcc
Confidence 578999999 55 89999999999999999999999999999 78999999999999874
No 70
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.52 E-value=4.2e-07 Score=73.90 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=52.7
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
.++.++|+.+ ++++.+++++.+|+++|.+++++.+||+| ++++++|+||.+|+++..
T Consensus 146 ~~V~dIMt~~-------litv~~~~sL~eAl~lM~~~~i~~LPVVD--~~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 146 TQVRDIMSTD-------LVTAPADTEPRKAFDLLEHAPRDVAPLVD--ADGTLAGILTRTGALRAT 202 (475)
T ss_pred CCHHHHccCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEHHHHHHHH
Confidence 5799999875 89999999999999999999999999998 789999999999999864
No 71
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=6.8e-07 Score=57.26 Aligned_cols=49 Identities=31% Similarity=0.391 Sum_probs=44.5
Q ss_pred CceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 69 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+++.++.+++++.++++.|.+++.+.+||++ ++|+++|++|.+|+++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~ 50 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVD--EDGRLVGIVTSWDISKAV 50 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEEC--CCCcEEEEEeHHHHHHHH
Confidence 3588999999999999999999999999998 779999999999998654
No 72
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.51 E-value=3e-07 Score=61.46 Aligned_cols=56 Identities=16% Similarity=0.374 Sum_probs=50.0
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|.++ +.++.+++++.++++.|.+++.+.+||++ +|+++|+||.+|++++
T Consensus 80 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd---~g~~~Gvit~~di~~~ 135 (135)
T cd04586 80 GRKVADVMTRP-------VVTVGEDTPLAEVAELMEEHRIKRVPVVR---GGRLVGIVSRADLLRA 135 (135)
T ss_pred CCCHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCccCEec---CCEEEEEEEhHhhhcC
Confidence 35688898765 88999999999999999999999999996 6899999999998753
No 73
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.51 E-value=3.7e-07 Score=59.47 Aligned_cols=55 Identities=29% Similarity=0.485 Sum_probs=49.4
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.+++++|.+.+.+.+||++ + |+++|++|.+|+++
T Consensus 66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 66 NLPVSDIMTRP-------VITIEPDTSVSDVASLMLENNIGGLPVVD--D-GKLVGIVTRTDILR 120 (121)
T ss_pred ccCHHHHccCC-------ceEECCCCcHHHHHHHHHHcCCCcccEEE--C-CEEEEEEEHHHhhc
Confidence 35788888764 78999999999999999999999999998 5 99999999999975
No 74
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.51 E-value=5.1e-07 Score=57.74 Aligned_cols=54 Identities=24% Similarity=0.522 Sum_probs=49.1
Q ss_pred cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++.++|.+. +.++.+++++.++++.|.+++.+.+||++ ++++++|+||..|+++
T Consensus 57 ~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~it~~di~~ 110 (111)
T cd04612 57 LVGDVMTRD-------PVTASPDETLRDALKRMAERDIGRLPVVD--DSGRLVGIVSRSDLLR 110 (111)
T ss_pred CHHHhccCC-------CeEECCCCCHHHHHHHHHhCCCCeeeEEc--CCCCEEEEEEHHHhhh
Confidence 677888765 89999999999999999999999999998 6799999999999875
No 75
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=98.51 E-value=6.2e-07 Score=48.46 Aligned_cols=47 Identities=32% Similarity=0.481 Sum_probs=43.0
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+++...+||++ ++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVD--EEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEEC--CCCeEEEEEEHHHHHHhh
Confidence 57889999999999999999999999998 678999999999998764
No 76
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=98.49 E-value=4.5e-07 Score=58.58 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=41.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
+.++.+++++.++++.|.+++.+.+||++ +|+++|+||.+|+.+
T Consensus 61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~---~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD---EGRLVGIITRKDLLK 104 (105)
T ss_pred CceECCCCcHHHHHHHHHHcCCCEEEEEE---CCeEEEEEEhhhhhc
Confidence 88999999999999999999999999995 789999999999875
No 77
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=5.9e-07 Score=57.70 Aligned_cols=56 Identities=25% Similarity=0.440 Sum_probs=50.1
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
...+.++|... ++++.+++++.++++.|.+++...+||++ ++|+++|++|.+|+++
T Consensus 56 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~--~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 56 DTPVSEIMTRD-------LVTVDPDEPVAEAAKLMRKNNIRHHLVVD--KGGELVGVISIRDLVR 111 (112)
T ss_pred ccCHHHhccCC-------CEEECCCCcHHHHHHHHHHcCccEEEEEc--CCCcEEEEEEHHHhcc
Confidence 45788888765 88999999999999999999999999998 6799999999999874
No 78
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=5.1e-07 Score=58.97 Aligned_cols=55 Identities=25% Similarity=0.363 Sum_probs=49.5
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... ++++.+++++.++++.|.+++...+||++ ++++++|++|.+|+++
T Consensus 67 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~vv~--~~~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTRD-------PITVSPDTPVDEASKLLLENSISCLPVVD--ENGQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcCC-------CeeeCCCCcHHHHHHHHHHcCCCeEeEEC--CCCCEEEEEEHHHhhh
Confidence 3577888765 88999999999999999999999999998 6799999999999985
No 79
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.49 E-value=4.8e-07 Score=57.86 Aligned_cols=54 Identities=19% Similarity=0.201 Sum_probs=48.0
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... ..++.++.++.++++.|.+++...+||++ +|+++|++|.+|++.
T Consensus 50 ~~~~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~---~~~~iGvit~~dl~~ 103 (104)
T cd04594 50 GDVVDYIVRG-------IPYVRLTSTAEEAWEVMMKNKTRWCPVVD---DGKFKGIVTLDSILD 103 (104)
T ss_pred cchhhhhhcC-------CcEEcCCCCHHHHHHHHHHcCcceEEEEE---CCEEEEEEEHHHhhc
Confidence 3577788764 78999999999999999999999999997 589999999999875
No 80
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.47 E-value=6.4e-07 Score=59.63 Aligned_cols=53 Identities=26% Similarity=0.475 Sum_probs=48.5
Q ss_pred cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++.++|.+. +..+.+++++.++++.|.+++.+.+||++ + |+++|++|.+|+++
T Consensus 79 ~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~-~~~iGvit~~dl~~ 131 (132)
T cd04636 79 KVEEIMTKK-------VITVDEDTTIEDVARIMSKKNIKRLPVVD--D-GKLVGIISRGDIIR 131 (132)
T ss_pred CHHHhccCC-------ceEECCCCcHHHHHHHHHHCCCCeeEEEE--C-CEEEEEEEHHHhhc
Confidence 788888765 78999999999999999999999999998 5 99999999999975
No 81
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=98.47 E-value=7.6e-07 Score=72.93 Aligned_cols=60 Identities=13% Similarity=0.257 Sum_probs=53.9
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
..++.++|++.. +++++.+++++.+|+++|.+++++.+||+| ++++++|+||++|++++.
T Consensus 162 ~~~V~eIMt~~~-----~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD--~~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 162 ETKLSEVMTSDD-----DLVTAPAGIDLEEAEAVLKDSKKGKLPLVN--EDGELVDLVTRTDVKRVK 221 (505)
T ss_pred CCcHHHHhccCC-----CcEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEHHHHHHHh
Confidence 467999998652 268999999999999999999999999998 789999999999999875
No 82
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.47 E-value=8.5e-07 Score=57.61 Aligned_cols=55 Identities=29% Similarity=0.473 Sum_probs=49.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.++++.|.+++...+||++ + ++++|++|.+|+++
T Consensus 66 ~~~v~~~~~~~-------~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKD-------VITVHPLDTVEEAALLMREHRIGCLPVVE--D-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCC-------CeEECCCCcHHHHHHHHHHcCCCeEEEee--C-CEEEEEEEHHHhhc
Confidence 45788998875 78999999999999999999999999998 4 89999999999875
No 83
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=98.46 E-value=8.9e-07 Score=58.88 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=44.0
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++++.|.++++.++||+| ++++++|++|.+|+++.+
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd--~~~~~~Gii~~~dl~~~~ 50 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVD--ESGKILGMVTLGNLLSSL 50 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHHHH
Confidence 478999999999999999999999999998 779999999999998643
No 84
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.46 E-value=8.4e-07 Score=56.79 Aligned_cols=55 Identities=35% Similarity=0.514 Sum_probs=49.2
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|.++ +.++.+++++.+|++.|.+++...+||++ ++|+++|+||..|+.+
T Consensus 55 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~G~v~~~di~~ 109 (110)
T cd04605 55 KSVEDIMTRN-------VITATPDEPIDVAARKMERHNISALPVVD--AENRVIGIITSEDISK 109 (110)
T ss_pred cCHHHhcCCC-------CeEECCCCcHHHHHHHHHHhCCCEEeEEC--CCCcEEEEEEHHHhhh
Confidence 3588888764 78999999999999999999999999998 7899999999999864
No 85
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.46 E-value=5.8e-07 Score=74.32 Aligned_cols=60 Identities=20% Similarity=0.276 Sum_probs=51.5
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
.++.|+|.++ +.++++++++.+|+++|.+++.+.+||+|++++++++|+||++|+.+.+.
T Consensus 512 ~~v~dim~~~-------~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 512 KTAADYAHTP-------FPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred chHHHhccCC-------CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 4677888765 78999999999999999999999999998321258999999999999875
No 86
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.44 E-value=1.2e-06 Score=56.62 Aligned_cols=47 Identities=34% Similarity=0.405 Sum_probs=43.4
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+++.+++||++ ++ ++++|++|.+|+++++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04630 3 VVTIDGLATVAEALQLMKEHGVSSLVVEK--RRESDAYGIVTMRDILKKV 50 (114)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCCCcEEEEEehHHHHHHH
Confidence 78999999999999999999999999998 66 8999999999998753
No 87
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.43 E-value=1.3e-06 Score=56.09 Aligned_cols=48 Identities=35% Similarity=0.536 Sum_probs=43.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++.+.|.+++.+.+||++ ++++++|+||..|+++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~~l~~~~ 49 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD--PDERPIGIVTERDIVRAV 49 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEC--CCCCEEEEeeHHHHHHHH
Confidence 378899999999999999999999999998 679999999999998764
No 88
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=98.41 E-value=1.1e-06 Score=67.40 Aligned_cols=60 Identities=15% Similarity=0.299 Sum_probs=52.6
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
..+|+++|.++. +++++++++++.+|++.|.+++...+||+| ++|+++|+||.+|+.+.+
T Consensus 196 ~~~V~~im~~~~-----~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd--~~g~~iG~vt~~dl~~~~ 255 (321)
T PRK11543 196 LNKVHHLMRRDD-----AIPQVALTASVMDAMLELSRTGLGLVAVCD--AQQQVQGVFTDGDLRRWL 255 (321)
T ss_pred HhHHHHHhccCC-----CCcEeCCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEecHHHHHHHH
Confidence 357899999851 278999999999999999999999999998 789999999999988654
No 89
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.41 E-value=1.5e-06 Score=56.05 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=43.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+++.+.+||+| ++++++|+|+.+|+.+.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~~~ 49 (116)
T cd04643 3 VAYVQDTNTLRHALLVLTKHGYSAIPVLD--KEGKYVGTISLTDILWKL 49 (116)
T ss_pred cEEECCCCcHHHHHHHHHHCCCceeeeEC--CCCcEEEEEeHHHHHHHh
Confidence 78899999999999999999999999998 789999999999998754
No 90
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.41 E-value=1.5e-06 Score=56.68 Aligned_cols=48 Identities=27% Similarity=0.536 Sum_probs=44.0
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
|+.++.+++++.+|++.|.+++..++||+| ++++++|+||..|+.+..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d--~~~~~~Givt~~dl~~~~ 49 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD--EDGDLVGVVSRKDLLKAS 49 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHHHH
Confidence 378999999999999999999999999998 679999999999988764
No 91
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.40 E-value=4.3e-07 Score=73.35 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=54.5
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
...++++|.+. ++++.++++.+++++.+.+|+.-.+|||| ++++++|+||..|++..+.
T Consensus 195 ~~~i~~im~~~-------~~~V~~~~dqeevA~~~~~ydl~a~PVVd--~~~~LiG~itiDDiidvi~ 253 (451)
T COG2239 195 DELLKDLMEDD-------VVSVLADDDQEEVARLFEKYDLLAVPVVD--EDNRLIGIITIDDIIDVIE 253 (451)
T ss_pred HhHHHHHhccc-------ceeecccCCHHHHHHHHHHhCCeecceEC--CCCceeeeeeHHHHHHHHH
Confidence 56788999986 89999999999999999999999999999 8999999999999988653
No 92
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.40 E-value=1.1e-06 Score=68.90 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=53.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
..++..+|+++ ++++.+.++++.+.+.|.=.+++-+||++ ++.+++|+||++|++.++.
T Consensus 248 ~t~ieKVMtkn-------p~tv~~~tsVAsvaq~MiwE~iem~PVv~--~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 248 STTIEKVMTKN-------PITVRAKTSVASVAQMMIWEGIEMLPVVD--SNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred CccHHHHhccC-------CeeecccchHHHHHHHHHhccceeeeEEc--CCceEEEEEEHHHHHHHHH
Confidence 45677777776 89999999999999999999999999999 8999999999999999864
No 93
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=98.39 E-value=1.5e-06 Score=55.23 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=43.1
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
++.+++++.++.+|++.|.+++.+.+||++ ++|+++|++|..|+.+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d--~~g~~~Giv~~~dl~~~ 48 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVD--ADGQPLGFVTRREAARA 48 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEEC--CCCCEEEEEeHHHHHHh
Confidence 378999999999999999999999999998 78999999999999864
No 94
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.39 E-value=1.9e-06 Score=55.06 Aligned_cols=47 Identities=36% Similarity=0.545 Sum_probs=43.4
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.+++++.++.++.+.|.+++.+.+||++ ++++++|++|.+|+++.+
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~Giv~~~~l~~~~ 49 (113)
T cd04623 3 VITVRPDATVAEAAKLMAEKNIGAVVVVD--DGGRLVGIFSERDIVRKV 49 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeEEEEC--CCCCEEEEEehHHHHHHH
Confidence 78899999999999999999999999998 679999999999998754
No 95
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.38 E-value=1.7e-06 Score=56.46 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=43.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++.+.|.+++.+++||++ ++|+++|+|+.+|+...+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~Giv~~~~l~~~~ 50 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVD--GDRRLVGIVTQRDLLRHA 50 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEEC--CCCCEEEEEEHHHHHhhh
Confidence 488999999999999999999999999998 679999999999997653
No 96
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=98.38 E-value=1.9e-06 Score=55.77 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=43.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++++.|.+.+.+.+||++ ++|+++|+++.+|+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~~ 49 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVD--RDGGVVGIITLPDLLRAL 49 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc--CCCCEEEEEEHHHHHHHH
Confidence 478899999999999999999999999998 789999999999998754
No 97
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=98.38 E-value=1.7e-06 Score=55.38 Aligned_cols=48 Identities=13% Similarity=0.197 Sum_probs=43.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++++.|.++++..+||++ ++++++|+|+..|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVD--DDGRLVGIVSLDDIREIL 49 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEEC--CCCCEEEEEEHHHHHHHH
Confidence 478899999999999999999999999998 678999999999998754
No 98
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=98.37 E-value=2.5e-06 Score=54.63 Aligned_cols=47 Identities=13% Similarity=0.290 Sum_probs=43.5
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.+|++.|.+++.+++||++ ++ ++++|++|..|+.+..
T Consensus 3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~--~~~~~~~G~v~~~~l~~~~ 50 (111)
T cd04590 3 IVALDADDTLEEILELIAESGHSRFPVYD--GDLDNIIGVVHVKDLLRAL 50 (111)
T ss_pred eEEEcCCCCHHHHHHHHhhCCCceEEEEC--CCCceEEEEEEHHHHHHHH
Confidence 78999999999999999999999999998 66 8999999999998764
No 99
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.37 E-value=2.2e-06 Score=56.50 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=43.2
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.+|++.|.+.+.+.+||++ ++++++|++|.+|+.+.+
T Consensus 3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 3 VITVREDDSVGKAINVLREHGISRLPVVD--DNGKLTGIVTRHDIVDFV 49 (128)
T ss_pred ceEeCCCCCHHHHHHHHHHcCCCEEEEEC--CCCcEEEEEEHHHHHHHH
Confidence 77899999999999999999999999998 779999999999998653
No 100
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.36 E-value=1.4e-06 Score=57.50 Aligned_cols=47 Identities=28% Similarity=0.351 Sum_probs=43.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++++++++.+|++.|.+++++++||+| ++|+++|++|..|+++..
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d--~~~~~~Giv~~~dl~~~~ 49 (126)
T cd04642 3 VVSIDSDERVLDAFKLMRKNNISGLPVVD--EKGKLIGNISASDLKGLL 49 (126)
T ss_pred eEEECCCccHHHHHHHHHHhCCCcccEEC--CCCcEEEEEEHHHhhhhh
Confidence 78899999999999999999999999998 779999999999998754
No 101
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=98.35 E-value=2e-06 Score=71.18 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=53.1
Q ss_pred CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
...+++|+|+++ ..++++++++.++.+.|.+++.+.+||+| ++++++|+||.+|+.+.+
T Consensus 445 ~~~~V~dim~~~-------~~~v~~~~tl~ea~~~l~~~~~~~~~VvD--~~g~lvGiVt~~dL~~~l 503 (574)
T PRK01862 445 RTTQMRELIQPA-------QTVVPPTASVADMTRVFLEYPVKYLYVVD--DDGRFRGAVALKDITSDL 503 (574)
T ss_pred hhCcHHHHhcCC-------CceeCCCCCHHHHHHHHHhCCCceEEEEc--CCCeEEEEEEHHHHHHHh
Confidence 456899999876 78899999999999999999999999999 789999999999998743
No 102
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.35 E-value=2.5e-06 Score=55.39 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=43.4
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.+|++.|.+++.+.+||+| ++|+++|+||.+|+.+.+
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~g~~~G~vt~~dl~~~~ 49 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCD--PHGKLAGVLTKTDVVRQM 49 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEEC--CCCCEEEEEehHHHHHHH
Confidence 67899999999999999999999999998 789999999999988754
No 103
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.35 E-value=1.6e-06 Score=55.72 Aligned_cols=48 Identities=21% Similarity=0.306 Sum_probs=43.6
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++.+.|.+++.+.+||++ ++++++|+|+..|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~ 49 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD--DNGNLVGFLSEQDCLKQL 49 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEEC--CCCeEEEEeehHHHHHHh
Confidence 378899999999999999999999999998 789999999999998753
No 104
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.34 E-value=2.7e-06 Score=54.11 Aligned_cols=47 Identities=32% Similarity=0.415 Sum_probs=43.2
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++.+.|.+++.+.+||++ + ++++|++|..|+.+.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~dl~~~~ 48 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD--D-GRVVGSIDESDLLDAL 48 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee--C-CeeEEEEeHHHHHHHH
Confidence 478899999999999999999999999998 5 9999999999998764
No 105
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.34 E-value=8.5e-07 Score=72.75 Aligned_cols=58 Identities=17% Similarity=0.323 Sum_probs=53.3
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
..+|.++|+.+ +++++.++-+.||.-.|.++++..+||++ +|+++||||..||++.+.
T Consensus 213 ~~~V~evmT~p-------~~svd~~~~~feAml~m~r~~I~hl~V~e---~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 213 TQKVSEVMTSP-------VISVDRGDFLFEAMLMMLRNRIKHLPVTE---DGQPLGILTLTDILRLFS 270 (610)
T ss_pred ccchhhhhccC-------ceeecCcchHHHHHHHHHHhCCceeeeec---CCeeeEEeeHHHHHHhhC
Confidence 56789999985 99999999999999999999999999994 999999999999998753
No 106
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.34 E-value=2.2e-06 Score=56.21 Aligned_cols=47 Identities=15% Similarity=0.391 Sum_probs=43.0
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~ 118 (121)
|+.++.+++++.+|++.|.++++..+||+| ++ ++++|+||.+|+++.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~~Giv~~~dl~~~ 49 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE--EESGEVIGILSQRRLVEF 49 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEe--CCCCcEEEEEEHHHHHHH
Confidence 478899999999999999999999999998 66 899999999998764
No 107
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=98.32 E-value=3.8e-06 Score=53.72 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=43.1
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++++++++.++.+.|.+++++++||++ + ++++|+++..|++++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~~l~~~~ 48 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVD--D-GKLVGIVTLSDIAHAI 48 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEee--C-CEEEEEEEHHHHHHHH
Confidence 478899999999999999999999999998 6 9999999999998764
No 108
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=98.32 E-value=1.9e-06 Score=70.26 Aligned_cols=78 Identities=28% Similarity=0.385 Sum_probs=61.3
Q ss_pred cceeeeeccccchhhh----hhcC-C----------------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHh
Q 033339 31 RPVVSSRFESVSSARM----EEHG-F----------------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ 89 (121)
Q Consensus 31 ~~~~~~~~~~~~~~~~----~~~g-~----------------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~ 89 (121)
.|.+.+.++++++..| ...| + ...++.++|.+ ++.++.+++++.++++.|.+
T Consensus 45 ~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~-------~pvtv~~d~tv~eA~~~m~~ 117 (479)
T PRK07807 45 IPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFD-------TPVTLSPDDTVGDALALLPK 117 (479)
T ss_pred cceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhccccccccc-------CCeEECCCCCHHHHHHHHHh
Confidence 4677888998876544 3344 1 22344455554 48999999999999999999
Q ss_pred cCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 90 HNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 90 ~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++++.+||+| ++++++|+||.+|+..
T Consensus 118 ~~~s~l~VVD--~~gklvGIVT~rDL~~ 143 (479)
T PRK07807 118 RAHGAVVVVD--EEGRPVGVVTEADCAG 143 (479)
T ss_pred cCCceEEEEC--CCCeEEEEEeHHHHhc
Confidence 9999999998 7899999999999753
No 109
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.31 E-value=2.8e-06 Score=55.53 Aligned_cols=47 Identities=28% Similarity=0.334 Sum_probs=43.2
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.+++++|.+++...+||++ ++ |+++|+|+.+|+++.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d--~~~~~~~G~v~~~dl~~~~ 50 (125)
T cd04631 3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVD--EGTGKLVGIITATDILKYL 50 (125)
T ss_pred ceEeCCCCcHHHHHHHHHHcCcccceeEe--CCCCEEEEEEEHHHHHHHh
Confidence 78899999999999999999999999998 66 9999999999998754
No 110
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=98.31 E-value=1.6e-06 Score=70.84 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=52.8
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
..++.++|++.. ++.++.++.++.+|+++|.+++++.+||+| ++++++|+||.+|+++.
T Consensus 158 ~~~V~diMt~~~-----~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd--~~g~liGIIT~~DIl~~ 216 (495)
T PTZ00314 158 STPVSEVMTPRE-----KLVVGNTPISLEEANEVLRESRKGKLPIVN--DNGELVALVSRSDLKKN 216 (495)
T ss_pred CCCHHHhhCCcC-----CceEeCCCCCHHHHHHHHHHcCCCeEEEEc--CCCcEEEEEEehHhhhc
Confidence 467999998621 288999999999999999999999999999 78999999999999876
No 111
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=98.30 E-value=4.3e-06 Score=53.17 Aligned_cols=47 Identities=28% Similarity=0.393 Sum_probs=43.0
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
++.++++++++.++++.|.+++..++||++ ++++++|+++..|+.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~ 49 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVD--KDNKLLGIVSLESLEQA 49 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEc--CCCcEEEEEEHHHHHHH
Confidence 478899999999999999999999999998 67999999999998764
No 112
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.29 E-value=3e-06 Score=55.14 Aligned_cols=47 Identities=30% Similarity=0.502 Sum_probs=43.5
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++.+.|.+.+++.+||++ ++|+++|++|.+|+.+..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~ 49 (122)
T cd04803 3 VVTLSEDDSLADAEELMREHRIRHLPVVN--EDGKLVGLLTQRDLLRAA 49 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCcccccEEC--CCCCEEEEEEHHHHHHHh
Confidence 78899999999999999999999999998 679999999999998754
No 113
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.29 E-value=3e-06 Score=56.53 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=43.5
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
++.++.+++++.++++.|.+++...+||++ ++++++|+++.+|+.+.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~~~~~~Gvi~~~dl~~~ 49 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVD--DDGRLVGIVSEGDLLRR 49 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEEC--CCCCEEEEeeHHHHHHH
Confidence 488999999999999999999999999998 78999999999999864
No 114
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.27 E-value=3.3e-06 Score=54.72 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=47.7
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCC---EEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVG---ALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~---~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.++++.|.+++.. ..||++ ++|+++|+||..|+++
T Consensus 60 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~--~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 60 KKPVSEVMDPD-------PLIVEADTPLEEVSRLATGRDSQNLYDGFIVT--EEGRYLGIGTVKDLLR 118 (119)
T ss_pred CCcHHHhcCCC-------cEEecCCCCHHHHHHHHHcCCcccccccEEEe--eCCeEEEEEEHHHHhc
Confidence 45788999765 88999999999999999988863 446787 6899999999999874
No 115
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.27 E-value=3.7e-06 Score=54.30 Aligned_cols=48 Identities=17% Similarity=0.143 Sum_probs=42.5
Q ss_pred ceEEEcCCCcHHHHHHHHHhcC-CCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.+++++.++.+|++.|.+++ .+.+||+| ++++++|+||.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~~ 50 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVD--NEGRYVGIISLADLRAIP 50 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEc--CCCcEEEEEEHHHHHHHH
Confidence 3788999999999999997775 88999998 789999999999988754
No 116
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.27 E-value=3.8e-06 Score=53.55 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=47.5
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... +.++.+++++.++++.|.+.+.+.+||++ +++++|++|..|+++
T Consensus 52 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~~~~~G~it~~d~~~ 105 (106)
T cd04638 52 EQLALLMTRD-------PPTVSPDDDVKEAAKLMVENNIRRVPVVD---DGKLVGIVTVADIVR 105 (106)
T ss_pred chHHHHhcCC-------CceECCCCCHHHHHHHHHHcCCCEEEEEE---CCEEEEEEEHHHhhc
Confidence 4577777664 78899999999999999999999999997 479999999999875
No 117
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.27 E-value=4.5e-06 Score=53.53 Aligned_cols=46 Identities=17% Similarity=0.349 Sum_probs=42.8
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
+.++++++++.++++.|.+++.+.+||++ ++|+++|+++.+|+..+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~ 48 (111)
T cd04626 3 FPTIDEDASIREALHEMLKYNTNEIIVKD--NEEKLKGVVTFTDILDL 48 (111)
T ss_pred ceEECCCccHHHHHHHHHHhCCCeEEEEc--CCCCEEEEEehHHhHHH
Confidence 78899999999999999999999999998 78999999999998865
No 118
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.27 E-value=2.6e-06 Score=65.34 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=49.6
Q ss_pred cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
.+.++|++ ++++.++.++.++++.|.+++.+.+||+| +.|.++|+||..|++..+.
T Consensus 134 ~l~~l~r~--------~~~V~e~~~l~~~L~~m~~~~~~~a~VvD--e~G~viGiVTleDIle~iv 189 (292)
T PRK15094 134 SMDKVLRQ--------AVVVPESKRVDRMLKEFRSQRYHMAIVID--EFGGVSGLVTIEDILELIV 189 (292)
T ss_pred CHHHHcCC--------CcCcCCCCcHHHHHHHHHhcCCEEEEEEe--CCCCEEEEeEHHHHHHHHh
Confidence 36667654 56899999999999999999999999999 7899999999999998764
No 119
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.26 E-value=3.7e-06 Score=52.89 Aligned_cols=53 Identities=23% Similarity=0.462 Sum_probs=47.8
Q ss_pred HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 56 v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
+.++|... ..++.+++++.++++.|.+++.+.+||++ ++++++|++|.+|+++
T Consensus 60 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 VGDVMTRD-------VVTVSPDTSLEEAAELMLEHGIRRLPVVD--DEGRLVGIVTRSDILR 112 (113)
T ss_pred HHHHhcCC-------ceecCCCcCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEEHHHhhc
Confidence 66777765 78899999999999999999999999998 6799999999999875
No 120
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.26 E-value=3.7e-06 Score=56.72 Aligned_cols=47 Identities=23% Similarity=0.348 Sum_probs=43.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.+|++.|.+++.+.+||+| ++++++|+||..|+++.+
T Consensus 3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d--~~~~~~Giv~~~dl~~~~ 49 (135)
T cd04621 3 IATVHPEHSLLHVVDEMEKNGVGRVIVVD--DNGKPVGVITYRDLAFAE 49 (135)
T ss_pred ceEeCCCCcHHHHHHHHHHcCCCcceEEC--CCCCEEEEEeHHHHHHHh
Confidence 67899999999999999999999999998 789999999999998764
No 121
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.25 E-value=4.4e-06 Score=53.50 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=43.0
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+.+...+||++ ++|+++|+|+..|+.+.+
T Consensus 3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~ 49 (111)
T cd04639 3 FETLSPADTLDDAADALLATTQHEFPVVD--GDGHLVGLLTRDDLIRAL 49 (111)
T ss_pred ceEcCCCCcHHHHHHHHHHcCCCcceEEC--CCCcEEEEeeHHHHHHHH
Confidence 77899999999999999999999999998 679999999999998764
No 122
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=98.24 E-value=3.9e-06 Score=53.34 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=45.1
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++|... +.++.+++++.++.++|.+ .. .+||++ ++++++|+||.+|+++
T Consensus 57 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~-~~-~~~vv~--~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 57 LPVREVMGEP-------LPTVDPDAPIEELSELLDR-GN-VAVVVD--EGGKFVGIITRADLLK 109 (110)
T ss_pred cCHHHHhcCC-------CceeCCCCcHHHHHHHHHh-CC-ceeEEe--cCCeEEEEEeHHHhhc
Confidence 5688888764 7899999999999999988 33 478888 6799999999999975
No 123
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.24 E-value=5.6e-06 Score=53.53 Aligned_cols=46 Identities=22% Similarity=0.351 Sum_probs=42.4
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
+.++.+++++.+|++.|.+.+.+.+||++ ++++++|+||..|+.+.
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~ 48 (111)
T cd04603 3 TVSVNCENPLREAIKMINELGARAVVVVD--EENKVLGQVTLSDLLEI 48 (111)
T ss_pred eEEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHhh
Confidence 67899999999999999999999999998 78999999999998763
No 124
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.24 E-value=5.1e-06 Score=54.86 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=42.0
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
+.++.+++++.++++.|.+++...+||++ ++|+++|+++..|+.+
T Consensus 3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~ 47 (126)
T cd04640 3 PIVIPADTSIDEALELMIKHGVRLLLVVD--SDDNFIGVITAVDLLG 47 (126)
T ss_pred CeEECCCCcHHHHHHHHHHcCCcEEEEEc--CCCcEEEEEEHHHHhh
Confidence 78899999999999999999999999998 6799999999999875
No 125
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.24 E-value=7.6e-06 Score=52.39 Aligned_cols=47 Identities=28% Similarity=0.259 Sum_probs=42.9
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.+|.+.|.+++.+++||++ + ++++|+|+..|+.+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~dl~~~~ 49 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVE--G-GRVVGIISRRDVEKAL 49 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEee--C-CEEEEEEEHHHHHHHH
Confidence 478999999999999999999999999998 6 9999999999988654
No 126
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.23 E-value=6.2e-06 Score=52.94 Aligned_cols=46 Identities=26% Similarity=0.287 Sum_probs=42.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
+.++.+++++.++++.|.+.+.+.+||++ ++++++|++|.+|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd--~~~~~~G~v~~~dl~~~ 48 (113)
T cd04615 3 PSCVVLNTDIARAVAEMYTSGSRALPVVD--DKKRLVGIITRYDVLSY 48 (113)
T ss_pred CEEeeCCCcHHHHHHHHHHcCCceEeEEc--CCCCEEEEEEHHHHHHh
Confidence 67889999999999999999999999998 67899999999999864
No 127
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=98.23 E-value=6.2e-06 Score=52.60 Aligned_cols=47 Identities=21% Similarity=0.170 Sum_probs=42.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++++.|.+.+...+||++ + ++++|+++..|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~dl~~~~ 48 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD--D-GRLVGIVTLADIRRVP 48 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEee--C-CeEEEEEEHHHHHHHH
Confidence 478999999999999999999999999998 5 9999999999998754
No 128
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.23 E-value=7.7e-06 Score=53.28 Aligned_cols=45 Identities=24% Similarity=0.447 Sum_probs=41.8
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
+.++++++++.++.+.|.+++++.+||++ + |+++|++|..|+.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~ 47 (122)
T cd04637 3 VVTVEMDDRLEEVREIFEKHKFHHLLVVE--D-NELVGVISDRDYLKA 47 (122)
T ss_pred ceEeCCCCCHHHHHHHHHhCCCCEEEEEe--C-CeEEEEEEHHHHHHH
Confidence 78899999999999999999999999998 5 999999999999764
No 129
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=98.21 E-value=4.2e-06 Score=67.61 Aligned_cols=59 Identities=20% Similarity=0.355 Sum_probs=52.5
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
..++.++|++. +++++.++.++.++++.|.+++.+.+||+| ++|+++|+||.+|+++..
T Consensus 142 ~~~V~dvm~~~------~~~~V~~~~sl~eal~~m~~~~~~~lpVVD--e~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 142 GKPVSEVMTRE------EVITVPEGIDLEEALKVLHEHRIEKLPVVD--KNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCHHHhhCCC------CCEEECCCCcHHHHHHHHHHcCCCeEEEEc--CCCcEEEEEEhHHhhhcc
Confidence 45788999841 289999999999999999999999999999 889999999999998764
No 130
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=98.21 E-value=8.6e-06 Score=52.17 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=41.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
++.++.+++++.++.+.|.+++.+.+||++ + ++++|+||.+|++..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~dl~~~ 47 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD--G-NKLVGIFTSKDIALR 47 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE--C-CEEEEEEEhHHHHHH
Confidence 378899999999999999999999999998 5 999999999998753
No 131
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.21 E-value=6.8e-06 Score=55.74 Aligned_cols=55 Identities=27% Similarity=0.462 Sum_probs=48.8
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++|... +.++.+++++.++++.|.+.+.+.+||++ + ++++|+||.+|++.
T Consensus 88 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 88 KMKVRDIMTKK-------VITISPDASIEDAAELMVRHKIKRLPVVE--D-GRLVGIVTRGDIIE 142 (143)
T ss_pred cCCHHHHcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEE--C-CEEEEEEEHHHhhc
Confidence 34677888765 89999999999999999999999999998 5 89999999999874
No 132
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.21 E-value=4.1e-06 Score=62.55 Aligned_cols=58 Identities=17% Similarity=0.391 Sum_probs=50.9
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
.+++++|.++ ++.++.+++++.++++.|.+.+.+++||+| ++|+++|+|+.+|+.+..
T Consensus 155 ~~v~~im~~~------~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd--~~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 155 VKVKDLMQTT------DLPLIAPTTSFKDALLEMSEKRLGSAIVCD--ENNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhHHHHhCCC------CCCcCCCCCcHHHHHHHHhhcCCcEEEEEe--CCCCEEEEEEcHHHHHHH
Confidence 5788888764 167899999999999999999999999998 789999999999998753
No 133
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.20 E-value=4.8e-06 Score=55.37 Aligned_cols=47 Identities=23% Similarity=0.401 Sum_probs=43.4
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+.+.+++||+| ++++++|+++..|+++.+
T Consensus 3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d--~~~~~~G~i~~~~l~~~~ 49 (132)
T cd04636 3 VITVKKDDTLRDVVEILLTGKISGVPVVD--NEGRVVGIVSEGDLIRKI 49 (132)
T ss_pred CeEeCCCCcHHHHHHHHHHhCCCccceEC--CCCCEEEEEeHHHHHHHH
Confidence 78899999999999999999999999998 789999999999998754
No 134
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=98.19 E-value=3.3e-06 Score=67.46 Aligned_cols=64 Identities=8% Similarity=0.237 Sum_probs=55.0
Q ss_pred CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
.|...+++|+|++... +.+++.++++.++++.+.+++++.+||+++ +.++++|+|+.+|++..+
T Consensus 187 ~l~~~~v~diMtpr~~-----v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~-~~d~ivGiv~~kDll~~~ 250 (408)
T TIGR03520 187 SFGNTDTKQVMRPRLD-----IFALDIETSFSEIIPKIIENGYSRIPVYKE-TIDNITGVLYIKDLLPHL 250 (408)
T ss_pred ccCCCEeeeeCCchHh-----EEEEECCCCHHHHHHHHHhCCCCEEEEEcC-CCCceEEEEEHHHHHhHh
Confidence 3467899999998532 899999999999999999999999999972 247899999999998643
No 135
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.19 E-value=5.3e-06 Score=53.96 Aligned_cols=46 Identities=35% Similarity=0.459 Sum_probs=42.8
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
+.++.+++++.++++.|.+.+.+++||++ ++|+++|+++..|+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~ 48 (122)
T cd04635 3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQ--KAGELIGIITRRDIIRA 48 (122)
T ss_pred CEEeCCCCcHHHHHHHHHHcCCCcccEEC--CCCcEEEEEEcHHHHhh
Confidence 78899999999999999999999999998 78999999999998764
No 136
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=98.17 E-value=8.7e-06 Score=52.68 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=41.7
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFK 117 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~ 117 (121)
++.++.+++++.++++.|.+.+.+.+||+| + +|+++|+++.+|+..
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~~~~G~v~~~dl~~ 51 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTE--DGKSGGKLLGIVTSRDIDF 51 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEee--CCCcCCEEEEEEEhHHhhh
Confidence 478999999999999999999999999998 5 689999999999864
No 137
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.17 E-value=1.1e-05 Score=52.00 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=42.9
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+.+...+||++ ++|+++|++|.+|+.+.+
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~~ 50 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVD--ENGRLLGTVTDGDIRRAL 50 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEEC--CCCCEEEEEEcHHHHHHH
Confidence 67899999999999999999999999998 789999999999987654
No 138
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.17 E-value=7.8e-06 Score=55.42 Aligned_cols=46 Identities=26% Similarity=0.480 Sum_probs=42.8
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++++++++++.++++.|.+.+...+||++ + ++++|++|..|+.+.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~-~~~~G~v~~~dl~~~~ 48 (143)
T cd04634 3 PITCNADDTISDAARLLRENKISGAPVLD--G-GKLVGIVSESDILKLL 48 (143)
T ss_pred cEEecCCCCHHHHHHHHHHcCCCcceEeE--C-CeEEEEecHHHHHHHH
Confidence 78999999999999999999999999998 5 9999999999998764
No 139
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=98.17 E-value=1.3e-05 Score=51.31 Aligned_cols=46 Identities=33% Similarity=0.585 Sum_probs=42.0
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
++.++.+++++.++.+.|.+++.+.+||++ + ++++|+++..|+.+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~--~-~~~~G~v~~~~l~~~ 47 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD--D-GRLVGIVTDRDLRNR 47 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE--C-CEEEEEEEhHHHHHH
Confidence 378899999999999999999999999998 5 999999999999864
No 140
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=98.16 E-value=7.9e-06 Score=52.97 Aligned_cols=47 Identities=30% Similarity=0.445 Sum_probs=43.0
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
++.++++++++.+|++.|.+.+...+||+| ++++++|+++..|+.+.
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~ 48 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVD--EEGRLVGIVTDRDLRDA 48 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEEC--CCCcEEEEEEHHHHHHH
Confidence 378999999999999999999999999998 67999999999998764
No 141
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=98.16 E-value=3.8e-06 Score=64.39 Aligned_cols=63 Identities=11% Similarity=0.294 Sum_probs=54.3
Q ss_pred CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC 119 (121)
Q Consensus 50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~ 119 (121)
.|...+|+++|++.. .+.+++++.++.++.+.+.+++.+.+||++ ++ ++++|+|+.+|++...
T Consensus 63 ~l~~~~V~diMtpr~-----~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~--~~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 63 DIADQRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKDHIEGILMAKDLLPFM 126 (292)
T ss_pred ccCCCEEeEEccchH-----HEEEEeCCCCHHHHHHHHHhcCCcEEEEec--CCCCcEEEEEEHHHHHhHh
Confidence 345678999999842 289999999999999999999999999997 44 7899999999998643
No 142
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=98.16 E-value=1.4e-05 Score=51.18 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=41.9
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+++++++.++.++++.|.+++.+.+||++ + ++++|+++..|+.+..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04589 3 PLIVDASTSIRDAARLMREHGADALLVRD--G-DPRLGIVTRTDLLDAV 48 (111)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEec--C-CeEEEEEEHHHHHHHH
Confidence 67899999999999999999999999998 5 8999999999988754
No 143
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.16 E-value=9.1e-06 Score=52.01 Aligned_cols=46 Identities=28% Similarity=0.294 Sum_probs=42.5
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++.++.+++++.++.+.|.+++.+.+||++ ++|+++|+|+.+|++.
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~ 48 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD--EKNKVVGIVTSKDVAG 48 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEEC--CCCeEEEEecHHHHhc
Confidence 378999999999999999999999999998 7899999999999875
No 144
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=98.15 E-value=1e-05 Score=52.18 Aligned_cols=46 Identities=28% Similarity=0.413 Sum_probs=42.4
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++++++++.++.+.|.+.+.+.+||++ + |+++|+++..|+.+..
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~i~~~~l~~~~ 48 (122)
T cd04585 3 PITVTPDTSLMEALKLMKENSIRRLPVVD--R-GKLVGIVTDRDLKLAS 48 (122)
T ss_pred CEEeCCCCcHHHHHHHHHhCCcceeeEec--C-CeEEEEEeHHHHHHhh
Confidence 78899999999999999999999999998 5 9999999999998754
No 145
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=98.15 E-value=1.5e-05 Score=50.81 Aligned_cols=46 Identities=30% Similarity=0.545 Sum_probs=42.2
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.+|++.|.+++.+.+||++ + ++++|+++.+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~~l~~~~ 48 (111)
T cd04611 3 ILTCPPDTSLAEAASRMRERRISSIVVVD--D-GRPLGIVTERDILRLL 48 (111)
T ss_pred ceEECCCCcHHHHHHHHHHcCCCEEEEee--C-CEEEEEEeHHHHHHHH
Confidence 77899999999999999999999999998 4 9999999999998764
No 146
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=98.15 E-value=7.9e-06 Score=66.61 Aligned_cols=59 Identities=24% Similarity=0.380 Sum_probs=52.3
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
..++.++|.+. +++++.+++++.++++.|.+++++.+||+| ++++++|+||.+|+++.+
T Consensus 146 ~~~V~dim~~~------~~v~v~~~~sl~eal~~m~~~~~~~lpVVD--e~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 146 SQPVSEVMTKE------RLVTVPEGTTLEEALELLHEHRIEKLPVVD--DNGRLKGLITVKDIEKAE 204 (486)
T ss_pred CCcHHHHcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEEhHHhhhhh
Confidence 35688898732 389999999999999999999999999999 889999999999998764
No 147
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=98.15 E-value=1.4e-05 Score=50.22 Aligned_cols=47 Identities=34% Similarity=0.566 Sum_probs=43.2
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.++.++.++.+.|.+++...+||++ ++++++|+++.+|+.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~G~v~~~~l~~~~ 49 (113)
T cd02205 3 VVTVSPDDTVAEALRLMLEHGISGLPVVD--DDGRLVGIVTERDLLRAL 49 (113)
T ss_pred ceEecCCCCHHHHHHHHHhcCCceEEEEC--CCCCEEEEEeHHHHHHHH
Confidence 77899999999999999999999999998 679999999999998764
No 148
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.13 E-value=1.2e-05 Score=52.09 Aligned_cols=47 Identities=21% Similarity=0.318 Sum_probs=41.9
Q ss_pred ceEEEcCCCcHHHHHHHHHhcC-CCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.++.+++++.++++.|...+ .+.+||++ + |+++|+|+..|+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd--~-~~~~G~v~~~~l~~~~ 49 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD--D-GRPVGLIMREALMELL 49 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE--C-CeeEEEEEHHHHHHHH
Confidence 3678999999999999998887 89999999 7 9999999999988653
No 149
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.13 E-value=1.3e-05 Score=52.01 Aligned_cols=46 Identities=30% Similarity=0.444 Sum_probs=42.1
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+++.+.+||++ + |+++|++|..++.+.+
T Consensus 3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~--~-~~~~G~v~~~~l~~~~ 48 (121)
T cd04633 3 VITVSPDDRVSHARRLMLDHDISRLPVIE--G-GKLVGIVTEKDIADAL 48 (121)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCeeEEEE--C-CEEEEEEchHHHHHhh
Confidence 78899999999999999999999999998 5 9999999999988653
No 150
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.12 E-value=1.7e-05 Score=50.80 Aligned_cols=44 Identities=36% Similarity=0.597 Sum_probs=40.9
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
+.++.+++++.+|.+.|.+++.+++||++ + |+++|++|..|++.
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~i~~~~l~~ 46 (113)
T cd04622 3 VVTVSPDDTIREAARLMREHDVGALPVCE--N-DRLVGIVTDRDIVV 46 (113)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEee--C-CEEEEEEEhHHHHH
Confidence 78899999999999999999999999998 5 99999999999863
No 151
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.11 E-value=8.1e-06 Score=60.96 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=45.4
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEe
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT 111 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt 111 (121)
..++.++|.+. +.++.+++++.+|+++|.+++...+||++ ++|+++|+|+
T Consensus 219 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~l~GvI~ 268 (268)
T TIGR00393 219 KSEVRDFMTLG-------PKTFKLDALLLEALEFLERRKITSLVVVD--DHNKVLGVLH 268 (268)
T ss_pred cCcHHHhCCCC-------CeEECCCCcHHHHHHHHHHcCCcEEEEEC--CCCeEEEEEC
Confidence 46789999775 78999999999999999999999999998 7889999985
No 152
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=98.09 E-value=5.2e-06 Score=68.26 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=51.3
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
+++.+++..+ +++|++..++.+|+++|.+.+++++.+++ +++..+||||++|++..+.
T Consensus 149 trv~~~~~~~-------~~~v~~~~~i~~aa~km~~~gv~s~v~l~--~~~~~~GIvT~~dl~~~v~ 206 (610)
T COG2905 149 TRVGEVKTLP-------AVTVSPQASIQDAARKMKDEGVSSLVVLD--DSGPLLGIVTRKDLRSRVI 206 (610)
T ss_pred HHHHHHhcCC-------CcccCccCcHHHHHHHHHhcCCCeEEEEc--CCCCccceeehHHHHHHHH
Confidence 4566666664 89999999999999999999999999998 7999999999999998754
No 153
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=98.09 E-value=1.2e-05 Score=56.87 Aligned_cols=57 Identities=25% Similarity=0.390 Sum_probs=47.9
Q ss_pred CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
...+++++|... +++++++.++..+-+++..+. ++.|+ ++|+++||||..|+++.+.
T Consensus 128 ~~~~vr~vM~e~-------fP~Vs~~~~l~vI~~LL~~~~--AVlV~---e~G~~vGIITk~DI~k~~~ 184 (187)
T COG3620 128 RSLRVREVMGEP-------FPTVSPDESLNVISQLLEEHP--AVLVV---ENGKVVGIITKADIMKLLA 184 (187)
T ss_pred hhhhHHHHhcCC-------CCcCCCCCCHHHHHHHHhhCC--eEEEE---eCCceEEEEeHHHHHHHHh
Confidence 356889999875 999999999998888887765 47777 4999999999999998754
No 154
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.07 E-value=1.9e-05 Score=49.93 Aligned_cols=46 Identities=33% Similarity=0.432 Sum_probs=41.3
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
++.++.+++++.++++.|.+++...+||++ +++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~~~Giv~~~~l~~~ 47 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---DGKLVGIITSRDVRRA 47 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---CCEEEEEEehHHhhcc
Confidence 378899999999999999999999999997 5899999999998753
No 155
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=98.07 E-value=1.2e-05 Score=65.42 Aligned_cols=77 Identities=25% Similarity=0.391 Sum_probs=59.9
Q ss_pred ccceeeeeccccchhhhhh----c-CC----------------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHH
Q 033339 30 LRPVVSSRFESVSSARMEE----H-GF----------------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT 88 (121)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~----~-g~----------------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~ 88 (121)
..|.+++.++++++..|.. . |. ...++.++|.+ +++++.+++++.++++.|.
T Consensus 43 ~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~qae~v~~VKv~eim~~-------~pvtv~p~~tI~eA~~lm~ 115 (475)
T TIGR01303 43 TIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAVKQTVAFVKSRDLVLD-------TPITLAPHDTVSDAMALIH 115 (475)
T ss_pred ccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHhhcchhhcccc-------CCeEECCCCCHHHHHHHHH
Confidence 3577889999988775533 2 22 12344455554 4899999999999999999
Q ss_pred hcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339 89 QHNVGALVVVKPGEQKSVAGIITERGIF 116 (121)
Q Consensus 89 ~~~~~~lpVvd~~~~~~lvGiVt~~Di~ 116 (121)
+++++.+||++ +++++|+||.+|+.
T Consensus 116 ~~~~~~~vVvD---~gklvGIVT~rDL~ 140 (475)
T TIGR01303 116 KRAHGAAVVIL---EDRPVGLVTDSDLL 140 (475)
T ss_pred hcCCeEEEEEE---CCEEEEEEEHHHhh
Confidence 99999999997 57999999999975
No 156
>COG0517 FOG: CBS domain [General function prediction only]
Probab=98.07 E-value=2.7e-05 Score=50.03 Aligned_cols=47 Identities=36% Similarity=0.484 Sum_probs=43.8
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
+.++.++.++.+|...|.++++..+||++ .++++|++|.+|+.+++.
T Consensus 9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~---~~~l~Giit~~di~~~~~ 55 (117)
T COG0517 9 VITVKPDTSVRDALLLMSENGVSAVPVVD---DGKLVGIITERDILRALA 55 (117)
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEee---CCEEEEEEEHHHHHHHHh
Confidence 89999999999999999999999999996 558999999999998864
No 157
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.06 E-value=2.8e-05 Score=49.76 Aligned_cols=46 Identities=41% Similarity=0.639 Sum_probs=41.7
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+++.+.+||++ + ++++|+++..|+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~dl~~~~ 48 (112)
T cd04802 3 VITVDPDTTVYEAANIMTENNIGRLIVVD--N-EKPVGIITERDLVKKV 48 (112)
T ss_pred cEEECCCCCHHHHHHHHHHCCCCEEEEEE--C-CEEEEEEEHHHHHHHH
Confidence 78899999999999999999999999998 4 4999999999998754
No 158
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=98.06 E-value=1.5e-05 Score=50.72 Aligned_cols=46 Identities=26% Similarity=0.375 Sum_probs=41.9
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++.++.+++++.++++.|.+++.+.+||++ ++|+++|++|.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~ 48 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVD--DDGKLVGIVTNRDLRF 48 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEc--CCCEEEEEEEhhHeee
Confidence 478999999999999999999999999998 6799999999999753
No 159
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.05 E-value=1e-05 Score=63.53 Aligned_cols=81 Identities=22% Similarity=0.364 Sum_probs=65.0
Q ss_pred cceeeeeccccchhhhhhcCC-------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC
Q 033339 31 RPVVSSRFESVSSARMEEHGF-------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ 103 (121)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~g~-------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~ 103 (121)
.|.+.+.+++.+-+.|..+-+ +-..|+|+|.+-.. ..++.+++++++..++..+.+.+.+||+| ..
T Consensus 158 lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~-----~~yL~~~d~v~d~~~l~~kt~~sRfPVvn--~~ 230 (432)
T COG4109 158 LPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLED-----TSYLRETDTVEDWLDLVEKTGHSRFPVVN--RS 230 (432)
T ss_pred CceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhcccccc-----ceeccccccHHHHHHHHHHcCCCccceec--cc
Confidence 466778888866544433222 34689999997543 78999999999999999999999999999 88
Q ss_pred CeeEEEEeHHHHHHH
Q 033339 104 KSVAGIITERGIFKA 118 (121)
Q Consensus 104 ~~lvGiVt~~Di~~~ 118 (121)
.+++|+||.+|+...
T Consensus 231 ~kvvGvVt~rDv~~~ 245 (432)
T COG4109 231 MKVVGVVTMRDVLDK 245 (432)
T ss_pred ceEEEEEEehhhhcC
Confidence 999999999998754
No 160
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=98.04 E-value=1.7e-05 Score=50.72 Aligned_cols=47 Identities=26% Similarity=0.406 Sum_probs=42.7
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++.+.|.+.+.+.+||++ ++|+++|+++..++.+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~~i~~~~ 50 (114)
T cd04604 4 LPLVSPDTSLKDALLEMSRKGLGMTAVVD--EDGRLVGIFTDGDLRRAL 50 (114)
T ss_pred ccccCCCCcHHHHHHHHHhcCccEEEEEc--CCCCEEEEechHHHHHHH
Confidence 67889999999999999988999999998 679999999999988764
No 161
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=98.02 E-value=3e-05 Score=49.37 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=40.9
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
-.++.+++++.++++.|.+.+.+.+||++ + ++++|+++.+|+.++
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~ 47 (104)
T cd04594 3 DIKVKDYDKVYEAKRIMIENDLLSLPVVD--Y-NKFLGAVYLKDIENA 47 (104)
T ss_pred ceEECCCCCHHHHHHHHHHcCCcEEEEEE--C-CEEEEEEEHHHHhhh
Confidence 36789999999999999999999999998 6 999999999998753
No 162
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=97.99 E-value=2.2e-05 Score=62.71 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=45.3
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
++.+++++.++.++++.|.+++.+..+|+| +.|.++|+||..|+++.+
T Consensus 263 ~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD--E~G~~~GiVT~eDileei 310 (408)
T TIGR03520 263 EPYFVPENKKLDDLLRDFQEKKNHLAIVVD--EYGGTSGLVTLEDIIEEI 310 (408)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCceEEEEEc--CCCCEEEEEEHHHHHHHH
Confidence 478999999999999999999999999999 789999999999999876
No 163
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=97.97 E-value=4e-05 Score=49.36 Aligned_cols=46 Identities=35% Similarity=0.449 Sum_probs=40.0
Q ss_pred eEEEcCCCcHHHHHHHHHhcC-CCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.+++++.++.++++.|..++ ...+||++ +|+++|+++..|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~G~v~~~dl~~~~ 49 (115)
T cd04620 3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE---KGRLLGIFTERDIVRLT 49 (115)
T ss_pred CeEeCCCCcHHHHHHHHHhcCCCceEEEcC---CCcEEEEEeHHHHHHHH
Confidence 678999999999999998888 67778775 58999999999998753
No 164
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=97.97 E-value=2e-05 Score=64.23 Aligned_cols=47 Identities=28% Similarity=0.335 Sum_probs=43.6
Q ss_pred CceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 69 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.++.++.+++++.++++.|.+++++.+||++ ++++++|+||.+|+..
T Consensus 95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~DL~~ 141 (486)
T PRK05567 95 TDPVTVTPDTTLAEALALMARYGISGVPVVD--ENGKLVGIITNRDVRF 141 (486)
T ss_pred CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEc--cCCEEEEEEEHHHhhh
Confidence 3489999999999999999999999999999 7899999999999863
No 165
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=97.97 E-value=2.4e-05 Score=64.21 Aligned_cols=49 Identities=10% Similarity=0.036 Sum_probs=44.5
Q ss_pred CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHH
Q 033339 67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFK 117 (121)
Q Consensus 67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~ 117 (121)
|+++++++++++++.+|++.|.+++++.+||+| + +++++|+||.+|+..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD--~~~~~GklvGIVT~~DL~~ 157 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTE--TGTMGSKLLGYVTKRDWDF 157 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEe--CCCcCCeEEEEEEHHHHhh
Confidence 667799999999999999999999999999998 4 489999999999854
No 166
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.96 E-value=5.5e-05 Score=48.38 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=40.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.++.+++++.++++.|.+++...++|.+ +|+++|++|.+|+.+.+
T Consensus 3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~G~v~~~dl~~~~ 48 (112)
T cd04625 3 IYTVAPETLLSEAVATMAEQDLGSLVVME---RGELVGLLTFREVLQAM 48 (112)
T ss_pred cEEECCCCcHHHHHHHHHHcCCCeEEEee---CCEEEEEEEHHHHHHHH
Confidence 67899999999999999988888888775 59999999999998654
No 167
>PRK11573 hypothetical protein; Provisional
Probab=97.91 E-value=5.1e-05 Score=60.81 Aligned_cols=63 Identities=14% Similarity=0.307 Sum_probs=55.6
Q ss_pred CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
.|...+++++|++... +.+++.++++.++++.+.+++.+.+||.++ +.+.++|+|..+|++..
T Consensus 183 ~l~~~~v~eiMtPr~~-----i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~-~~D~IiGiv~~kDll~~ 245 (413)
T PRK11573 183 DLEKVTVDDIMVPRNE-----IVGIDINDDWKSILRQLTHSPHGRIVLYRD-SLDDAISMLRVREAYRL 245 (413)
T ss_pred ccCCCChhhcCCccce-----EEEEECCCCHHHHHHHHHhCCCceEEEEcC-CCCceEEEEEHHHHHHH
Confidence 3467899999999754 899999999999999999999999999973 35889999999999864
No 168
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=97.91 E-value=4.1e-05 Score=49.25 Aligned_cols=47 Identities=17% Similarity=0.141 Sum_probs=42.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~~~ 119 (121)
...+.+++++.++.+.+.+++...+||++ + +|+++|+|+.+|+.+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~~~~G~v~~~dl~~~~ 53 (105)
T cd04591 4 VVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESPRLVGYILRSQLVVAL 53 (105)
T ss_pred eEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCCEEEEEEeHHHHHHHH
Confidence 67889999999999999999999999998 5 68999999999998764
No 169
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.91 E-value=4e-05 Score=60.51 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=49.0
Q ss_pred cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
.+.+.+... ..++.+++++.+++..|.+++.. +||+| ++|+++|+||..++++++.
T Consensus 303 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 303 GLQDVLIDD-------IYTVDAGTLLRETVRKVLKAGIK-VPVVD--EDQRLVGIVTRGSLVDALY 358 (363)
T ss_pred chhhhhccC-------CceECCCCcHHHHHHHHHhCCCC-EEEEC--CCCcEEEEEEHHHHHHHHH
Confidence 355556543 78999999999999999999999 99998 8999999999999998874
No 170
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=97.90 E-value=2.6e-05 Score=63.08 Aligned_cols=49 Identities=24% Similarity=0.308 Sum_probs=44.1
Q ss_pred CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC---CeeEEEEeHHHHHH
Q 033339 67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERGIFK 117 (121)
Q Consensus 67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~---~~lvGiVt~~Di~~ 117 (121)
|.+++.++++++++.++++.|.+++++.+||++ ++ ++++|+||.+|+..
T Consensus 86 ~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd--~~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 86 IISDPVTISPETTVADVLELMERKGISGIPVVE--DGDMTGKLVGIITKRDIRF 137 (450)
T ss_pred eecCceEeCCCCCHHHHHHHHHHcCCCEEEEEe--CCCCCCeEEEEEEHHHHhh
Confidence 444589999999999999999999999999998 55 79999999999874
No 171
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=97.87 E-value=3.5e-05 Score=63.22 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=46.5
Q ss_pred cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHH
Q 033339 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFK 117 (121)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~ 117 (121)
.|.++|... ....+++++++++.+|++.|.+++++.+||+| + +++++|+||.+|+..
T Consensus 95 kVk~~~~g~----i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD--~~~~~gkLvGIVT~~DLr~ 154 (502)
T PRK07107 95 RVKNYKAGF----VVSDSNLTPDNTLADVLDLKEKTGHSTVAVTE--DGTAHGKLLGIVTSRDYRI 154 (502)
T ss_pred HHHHHhcCC----cCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEe--CCCcCCEEEEEEEcHHhhc
Confidence 356666532 11257999999999999999999999999998 4 589999999999863
No 172
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.83 E-value=3.8e-05 Score=49.17 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=36.6
Q ss_pred EcCCCcHHHHHHHHHhcC-----CCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 74 CTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 74 v~~~~~l~ea~~~m~~~~-----~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
+.+++++.++++.|.+++ ...+||++ ++++++|+|+.+|+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd--~~~~~~G~v~~~~l~~ 48 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVD--EEGRLLGVVSLRDLLL 48 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEEC--CCCCEEEEEEHHHHhc
Confidence 568899999999998877 47899998 6799999999999864
No 173
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=97.82 E-value=0.00011 Score=46.64 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=41.1
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
..++.++.++.+++..|.+.+.+.+||++ ++++++|+++.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~g~v~~~~l~~ 47 (106)
T cd04638 3 VVYVTLPGTRDDVLELLKEYKVSGVPVVK--KSGELVGIITRKDLLR 47 (106)
T ss_pred cEEECCCCCHHHHHHHHHHcCCCeEEEEc--CCCcEEEEEEHHHHHh
Confidence 67889999999999999999999999998 6799999999999864
No 174
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.82 E-value=0.0001 Score=46.67 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=40.6
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++.++.++.++.++++.|.+.+.+.+||++ + ++++|+++..|++.
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~-~~~~g~v~~~~l~~ 47 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD--N-GKVVGIVSARDLLG 47 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeE--C-CEEEEEEEHHHhhc
Confidence 378899999999999999988888999998 5 99999999999864
No 175
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=97.81 E-value=6e-05 Score=61.76 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=43.4
Q ss_pred CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC-CCeeEEEEeHHHHH
Q 033339 67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERGIF 116 (121)
Q Consensus 67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~-~~~lvGiVt~~Di~ 116 (121)
|+.+++++++++++.+|+++|.+++++.+||++++. +++++|+||.+|+.
T Consensus 102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~ 152 (495)
T PTZ00314 102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID 152 (495)
T ss_pred cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence 556689999999999999999999999999998210 38999999999985
No 176
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=97.76 E-value=9.7e-05 Score=59.68 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=50.7
Q ss_pred CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHh-----cCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~-----~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
.|...+++++|++. +.+++++.++.+|++.|.+ ++...++|+| ++++++|+|+.+|++.
T Consensus 127 ~~~e~tvg~iMt~~-------~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd--~~~~l~GvV~l~dLl~ 190 (449)
T TIGR00400 127 SYSDDSAGRIMTIE-------YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN--ESKHLKGVLSIRDLIL 190 (449)
T ss_pred CCCcchHHHhCcCc-------eEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC--CCCeEEEEEEHHHHhc
Confidence 34567899999865 8999999999999999975 5667899998 7899999999999864
No 177
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.71 E-value=0.0001 Score=59.29 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=57.0
Q ss_pred CCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
+...+++++|++... +.+++.+.++.++.+.+.+.+++.+||++ +..+.++|++..+|++....
T Consensus 203 l~~~~v~eiMtPR~~-----i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~ 266 (429)
T COG1253 203 LDDRTVREIMTPRTD-----IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALL 266 (429)
T ss_pred cCCcEeeeEeeeccc-----EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHh
Confidence 367899999999753 89999999999999999999999999998 35689999999999998754
No 178
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=97.71 E-value=0.00012 Score=58.80 Aligned_cols=54 Identities=15% Similarity=0.311 Sum_probs=44.3
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
.++.++|.+. +.++++++++.+++++|.+++ .|+|+ ++++++|+||.+|+++++
T Consensus 400 ~~v~~im~~~-------~~~v~~~~~l~~a~~~~~~~~---~~vV~--~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 400 DAVSKVMSKK-------FIQIGEGEKLSDLSKFLEKNS---SAIVT--EEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred CCHHHhcCCC-------CeEECCcCcHHHHHHHHHHCC---eeEEE--ECCEEEEEEEHHHHHHhh
Confidence 4677888654 789999999999999998864 34555 478999999999999875
No 179
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=0.00027 Score=56.53 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=43.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
..++.+++++.+++..+.+.... +||+| ++|+++|+||..++++++.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 347 PLAVDAQTPLSELLSHVGQAPCA-VPVVD--EDQQYVGIISKGMLLRALD 393 (400)
T ss_pred CceeCCCCCHHHHHHHHHhCCCc-EEEEC--CCCcEEEEEEHHHHHHHHH
Confidence 78999999999999999998877 99998 8999999999999999874
No 180
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=97.49 E-value=0.00033 Score=55.73 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=45.5
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
+++|.+++++.+++..|..++++.+.||| ++|.++|+||.+|++.++.
T Consensus 312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd--~~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVD--EDGVLVGVISLSDILSYLV 359 (381)
T ss_pred cEEEeecchHHHHHHHHHhcCceEEEEEc--CCCcEEEEeeHHHHHHHHH
Confidence 79999999999999999999999999999 7899999999999998763
No 181
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.00017 Score=57.70 Aligned_cols=57 Identities=18% Similarity=0.270 Sum_probs=52.8
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
...+.++|++. .++...+.++.++-+++.+.+.+.|||+| ++|+++.+++++|+.+.
T Consensus 170 ~~~~~~vmt~~-------~~~~~~gi~l~~~neiL~~~kkGkl~iv~--~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTKN-------PVTGAQGITLKEANEILKKIKKGKLPVVD--DKGELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhcccc-------cccccccccHHHHHHHHHhhhcCCcceec--cCCceeeeeehhhhhhh
Confidence 57889999987 68999999999999999999999999999 89999999999999764
No 182
>PRK11573 hypothetical protein; Provisional
Probab=97.27 E-value=0.00094 Score=53.58 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=45.5
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
|+.+++++.++.++++.|.+++.+-..|+| +.|...|+||..|++..+.
T Consensus 263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD--EyG~~~GiVTleDilEeiv 311 (413)
T PRK11573 263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVD--EYGDIQGLVTVEDILEEIV 311 (413)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe--cCCCeEEEeeHHHHHHHHh
Confidence 588999999999999999999999999999 8899999999999998653
No 183
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=97.06 E-value=0.002 Score=51.82 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=45.9
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
+++.+++..++.++++.|.+.+.+-..|+| +.|...|+||..|++..+.
T Consensus 280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD--EyG~~~GlVTleDIiEeIv 328 (429)
T COG1253 280 PPLFVPETLSLSDLLEEFREERTHMAIVVD--EYGGVEGLVTLEDIIEEIV 328 (429)
T ss_pred CCeEecCCCcHHHHHHHHHHhCCeEEEEEE--cCCCeEEEeEHHHHHHHHh
Confidence 689999999999999999999999999999 8899999999999998753
No 184
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=96.97 E-value=0.0011 Score=44.86 Aligned_cols=31 Identities=35% Similarity=0.371 Sum_probs=29.2
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeC
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~ 100 (121)
+++++.+++++.+|++.|.+++++.+||+++
T Consensus 87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 3889999999999999999999999999974
No 185
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=96.96 E-value=0.0015 Score=51.94 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=43.8
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+..+..++++.+|+++|.+++++.+||++ ..|+.+|.++..|+....
T Consensus 239 i~~i~~~~~v~~al~~m~~~~is~lpvV~--~~g~~v~~~s~~Dv~~l~ 285 (381)
T KOG1764|consen 239 IASISEDTPVIEALKIMSERRISALPVVD--ENGKKVGNYSRFDVIHLA 285 (381)
T ss_pred heeecCCCcHHHHHHHHHhcCcCcceEEc--CCCceecceehhhhhhhh
Confidence 78899999999999999999999999999 888889999999987654
No 186
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.65 E-value=0.0082 Score=47.78 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=44.2
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
+.+++.++++.+-+..|.+++-+.-.||| +-|.+.|+||..|++.-+
T Consensus 277 pyFVPe~Tpl~~QL~~F~~~k~hialVVD--EYG~i~GLVTLEDIlEEI 323 (423)
T COG4536 277 PYFVPEGTPLSDQLVAFQRNKKHIALVVD--EYGDIQGLVTLEDILEEI 323 (423)
T ss_pred CeecCCCCcHHHHHHHHHHhcceEEEEEe--ccCcEEeeeeHHHHHHHH
Confidence 78999999999999999999999999999 899999999999998754
No 187
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.0014 Score=49.32 Aligned_cols=63 Identities=11% Similarity=0.285 Sum_probs=55.4
Q ss_pred CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
...+|+|+|-+... .+++..++++.+.+..+.+...+.+||+.+ +...+.||+-.+|+++.+.
T Consensus 65 adl~vrDiMIPRSQ-----M~~l~~~~~l~~~l~~iiesaHSRfPVi~e-dkD~v~GIL~AKDLL~~~~ 127 (293)
T COG4535 65 ADLRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHVEGILLAKDLLPFMR 127 (293)
T ss_pred HHhhHhhhcccHHH-----heeccccCCHHHHHHHHHHhccccCCcccC-CchhhhhhhhHHHHHHHhc
Confidence 46789999998743 899999999999999999999999999974 3578999999999998754
No 188
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0049 Score=51.84 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=42.6
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
++++.+++++..+..++++-+++.+.|++ +.++++|++|++|+.+
T Consensus 700 PytV~~~mSl~k~~~lFR~lGLRhLlVv~--~~~~~~gilTR~D~~~ 744 (762)
T KOG0474|consen 700 PYTVPETMSLAKAFILFRQLGLRHLLVVP--KTNRVVGILTRKDLAR 744 (762)
T ss_pred CcccCcccchHHHHHHHHHhcceeEEEec--CCCceeEEEehhhhhh
Confidence 78999999999999999999999999998 7888999999999875
No 189
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=96.33 E-value=0.012 Score=46.96 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=40.9
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
..++++++++.+++..+.+.... +||++ +|+++|+|+..+++.++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 335 PTVINPDTLMRDVLAARHRTGGA-ILLVE---NGRIVGVIGDDNIYHALL 380 (382)
T ss_pred CcccCCCCcHHHHHHHHhcCCCC-eEEee---CCeEEEEEeHHHHHHHHh
Confidence 67899999999999999888765 88887 499999999999998864
No 190
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=96.26 E-value=0.012 Score=47.88 Aligned_cols=57 Identities=21% Similarity=0.357 Sum_probs=47.2
Q ss_pred CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhc-----CCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
...++.-+|+.. ++++.++.|+.+++..+++. .+..+-|+| ++++++|++|.++++.
T Consensus 130 ~e~taG~~Mt~e-------~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD--~~~~L~Gvvsl~~Ll~ 191 (451)
T COG2239 130 PEDTAGRIMTTE-------FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD--EKGKLLGVVSLRDLLT 191 (451)
T ss_pred Chhhhhccceee-------eEEeccCcCHHHHHHHHHHhcccccccceEEEEC--CccceEEEeeHHHHhc
Confidence 344566666665 99999999999999999844 567899999 8899999999999874
No 191
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.0055 Score=48.77 Aligned_cols=67 Identities=15% Similarity=0.308 Sum_probs=57.3
Q ss_pred cCCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhhC
Q 033339 49 HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121 (121)
Q Consensus 49 ~g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~~ 121 (121)
.+++..+|.|+|.+... ...+..+++.+++++.+...-...+|+..+ +-+.++|++..+|+++++.+
T Consensus 195 LDLe~~tV~DIMvpR~~-----i~~id~d~~~e~iv~ql~~s~HtRiplyr~-~~DnIiGvlh~r~llr~l~e 261 (423)
T COG4536 195 LDLENLTVSDIMVPRNE-----IIGIDIDDPWEEIVRQLLHSPHTRIPLYRD-DLDNIIGVLHVRDLLRLLNE 261 (423)
T ss_pred cccccceeeeeeccccc-----eeeecCCCCHHHHHHHHhhCCCCceeeecC-ChhHhhhhhhHHHHHHHhhc
Confidence 34477899999998743 889999999999999999999999999964 23569999999999998753
No 192
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.20 E-value=0.052 Score=45.78 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=47.5
Q ss_pred cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
..+++|.-. +.++....+.+.+++++++-++..+.|. ++|+++|+||.+|+++..
T Consensus 640 ~lk~il~~t-------p~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 640 DLKDILDMT-------PFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRHT 694 (696)
T ss_pred CceeeccCC-------cccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHhh
Confidence 345555554 7899999999999999999999999988 599999999999999864
No 193
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.65 E-value=0.028 Score=48.31 Aligned_cols=61 Identities=13% Similarity=0.214 Sum_probs=52.8
Q ss_pred cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
...|+++|.++ +.++..+.|..|..+.+....+..+|+|++.+..-|+|.|.++.+...+.
T Consensus 587 ~v~VE~iMV~d-------v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~ 647 (931)
T KOG0476|consen 587 TVKVEHIMVTD-------VKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ 647 (931)
T ss_pred EEEeeeecccc-------ceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence 56789999986 99999999999999888877799999998655568999999999887653
No 194
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.62 E-value=0.088 Score=41.53 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=41.6
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~ 120 (121)
++.++.+++++.+.+..+.+... .+||+| ++++++|++++..++.++.
T Consensus 336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvd--e~~r~vG~i~~~~vl~aL~ 383 (386)
T COG4175 336 DVLTVDADTPLSEILARIRQAPC-PVAVVD--EDGRYVGIISRGELLEALA 383 (386)
T ss_pred cccccCccchHHHHHHHHhcCCC-ceeEEc--CCCcEEEEecHHHHHHHHh
Confidence 37789999999998888887766 588898 8999999999999998864
No 195
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.032 Score=45.03 Aligned_cols=85 Identities=24% Similarity=0.357 Sum_probs=57.6
Q ss_pred cceeeeeccccchhhhh----hc-CC----Cccc-------HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCE
Q 033339 31 RPVVSSRFESVSSARME----EH-GF----ESTT-------ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA 94 (121)
Q Consensus 31 ~~~~~~~~~~~~~~~~~----~~-g~----~~~~-------v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~ 94 (121)
.|.+.+.++++++..|. .. |+ .+-+ ++.+-.-. ...+.+++.++|.+++.++++....++...
T Consensus 63 tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~-~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g 141 (503)
T KOG2550|consen 63 TPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYE-NGFINNPIVISPTTTVGEVKEAKEKHGFSG 141 (503)
T ss_pred CceeccCCcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhh-cccccCCcccCCcccchhhhhhcccccccc
Confidence 46777889998866442 22 22 1112 22221111 012344789999999999999999999999
Q ss_pred EEEEeCCC-CCeeEEEEeHHHHH
Q 033339 95 LVVVKPGE-QKSVAGIITERGIF 116 (121)
Q Consensus 95 lpVvd~~~-~~~lvGiVt~~Di~ 116 (121)
+||+.++. ..+|+|+||.+|+-
T Consensus 142 ~pvTe~g~~~~KLvG~vtsrdi~ 164 (503)
T KOG2550|consen 142 IPVTEDGKRGSKLVGIITSRDIQ 164 (503)
T ss_pred cccccCCcccceeEEEEehhhhh
Confidence 99995322 36899999999974
No 196
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=94.56 E-value=0.14 Score=41.11 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=45.8
Q ss_pred ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
.++.++|.+... ..+...++.+..+++..|.+.+.+.+.|+| ++++++|+|+..++.+.
T Consensus 274 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~ 332 (400)
T PRK10070 274 FSAKDIARRTPN----GLIRKTPGFGPRSALKLLQDEDREYGYVIE--RGNKFVGAVSIDSLKTA 332 (400)
T ss_pred cchhhhhhcCcc----cccccCCCCCHHHHHHHHHhcCCceEEEEc--CCCcEEEEEeHHHHHhh
Confidence 355667754311 023455778899999999999999999999 89999999999998754
No 197
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.12 E-value=0.12 Score=39.66 Aligned_cols=42 Identities=19% Similarity=0.201 Sum_probs=35.6
Q ss_pred cCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 75 ~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
.......+++..+...+...+||+| ++|+++|.||..+++..
T Consensus 267 ~~~~~~~~~ls~~~~~~~~~~~Vvd--~~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 267 LEGFVDRDALSDFLARGRSVLPVVD--EDGRPLGTVTRADLLDE 308 (309)
T ss_pred ccchhhHHHHHHHHhcCCceeEEEC--CCCcEeeEEEHHHHhhh
Confidence 3444556688889999999999999 89999999999999864
No 198
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=94.05 E-value=0.18 Score=42.63 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=54.7
Q ss_pred cchhhhhhcCCC---------cccHHHHhhhcCCCCCCceEEEcCC-CcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEE
Q 033339 41 VSSARMEEHGFE---------STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110 (121)
Q Consensus 41 ~~~~~~~~~g~~---------~~~v~dim~~~~~~~~~~~~~v~~~-~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiV 110 (121)
++|.+...+|+. .+...++|.+...+ ++..+++.+ .++.+...+|.++.....||+-+.+.++++|.|
T Consensus 521 Iyda~I~~ng~P~l~~k~e~~~t~~~~v~~p~~~~--~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv 598 (696)
T KOG0475|consen 521 IYDAHIELNGYPFLDSKSEFSSTLAIPVMEPCRSE--SCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFV 598 (696)
T ss_pred HHHHHHHhcCCCCcccccccccchhhhhhchhcCc--hhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEE
Confidence 566666666661 12234555553210 124555555 899999999999999999999654578999999
Q ss_pred eHHHHHHHhh
Q 033339 111 TERGIFKACH 120 (121)
Q Consensus 111 t~~Di~~~~~ 120 (121)
.++|+..++.
T Consensus 599 ~rr~l~~~i~ 608 (696)
T KOG0475|consen 599 LRRNLFLAIL 608 (696)
T ss_pred chHHHHHHHh
Confidence 9999987765
No 199
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=93.96 E-value=0.044 Score=46.33 Aligned_cols=61 Identities=13% Similarity=0.164 Sum_probs=51.6
Q ss_pred CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC---CeeEEEEeHHHHHHHh
Q 033339 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERGIFKAC 119 (121)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~---~~lvGiVt~~Di~~~~ 119 (121)
.+..++|+|.++ ++++..-+.+...++.+..+....+||+|+-+. +++.|+|=++.++..+
T Consensus 580 r~L~a~ev~~~p-------vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL 643 (762)
T KOG0474|consen 580 RNLTAGEVMSKP-------VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL 643 (762)
T ss_pred hhhhHhhhccCC-------eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence 356889999985 999999999999999999999999999985222 5789999888877654
No 200
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=93.12 E-value=0.34 Score=36.76 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=44.5
Q ss_pred CCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 68 DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 68 ~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
-+|.+.++++-.+.-.++-+..+...-..|+| +-|-+.|+||..|++.-+
T Consensus 139 LRPav~VPESKrvd~lLkeFR~~RnHMAIViD--EfGgVsGLVTIEDiLEqI 188 (293)
T COG4535 139 LRPAVVVPESKRVDRLLKEFRSQRNHMAIVID--EFGGVSGLVTIEDILEQI 188 (293)
T ss_pred cccceecccchhHHHHHHHHHhhcCceEEEEe--ccCCeeeeEEHHHHHHHH
Confidence 34589999999999999999999999999999 889999999999998754
No 201
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=91.08 E-value=1.1 Score=35.40 Aligned_cols=46 Identities=26% Similarity=0.305 Sum_probs=40.5
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
.....++.+..++++.|...+...+.|++ +++++.|+|+.+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~ 297 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVD--RQNKLVGVVDVESIKQA 297 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEc--CCCCEEEEEeHHHHHHH
Confidence 45667788999999999999999999998 88999999999998764
No 202
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=75.74 E-value=5.4 Score=34.96 Aligned_cols=50 Identities=12% Similarity=0.146 Sum_probs=44.6
Q ss_pred CceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhhC
Q 033339 69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121 (121)
Q Consensus 69 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~~ 121 (121)
+.++-+.+.+++.++=.++.--+++..=|++ -|+++|+|..+++..++.+
T Consensus 810 paPfQLve~TSL~K~HtLFSLLgL~~AYVT~---~GrLvGVValkELRkAie~ 859 (931)
T KOG0476|consen 810 PAPFQLVEGTSLYKVHTLFSLLGLNHAYVTS---CGRLVGVVALKELRKAIEN 859 (931)
T ss_pred CCceeeeccchHHHHHHHHHHhccchhhhcc---cCcEEEEEEHHHHHHHHHh
Confidence 3477889999999999999999999999995 8999999999999998753
No 203
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=62.01 E-value=20 Score=22.01 Aligned_cols=25 Identities=12% Similarity=0.296 Sum_probs=19.0
Q ss_pred CCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 92 VGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 92 ~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
...+-|++ ++|+.+|+++.++.++.
T Consensus 12 ~~~VrlI~--~~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLID--EDGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE---TTS-EEEEEEHHHHHHH
T ss_pred CCEEEEEC--CCCcEeceEEHHHHHHH
Confidence 46678888 89999999999998765
No 204
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=58.04 E-value=24 Score=22.52 Aligned_cols=60 Identities=8% Similarity=0.281 Sum_probs=38.4
Q ss_pred CCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHH---hcCCCEEEEEeCCC-CCeeE----EEEeHHHHHHHh
Q 033339 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT---QHNVGALVVVKPGE-QKSVA----GIITERGIFKAC 119 (121)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~---~~~~~~lpVvd~~~-~~~lv----GiVt~~Di~~~~ 119 (121)
+.+..+.+.+... ++.+..+.+=.+..+... -.+...+.+++ . +|+++ |-++.++++..+
T Consensus 40 l~~~~v~~~l~~~-------~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~--~~~g~~l~~~~G~~~~~~f~~~L 107 (114)
T cd02958 40 WSNESVKEFIREN-------FIFWQCDIDSSEGQRFLQSYKVDKYPHIAIID--PRTGEVLKVWSGNITPEDLLSQL 107 (114)
T ss_pred cCCHHHHHHHHhC-------EEEEEecCCCccHHHHHHHhCccCCCeEEEEe--CccCcEeEEEcCCCCHHHHHHHH
Confidence 4566788888865 666555554344444444 44566677777 5 56544 888888887765
No 205
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=56.30 E-value=14 Score=23.94 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=13.9
Q ss_pred CCEEEEEeCCCCCeeEEEEeH
Q 033339 92 VGALVVVKPGEQKSVAGIITE 112 (121)
Q Consensus 92 ~~~lpVvd~~~~~~lvGiVt~ 112 (121)
.-..||.| .+|+++|+|+.
T Consensus 91 ~~~~PV~d--~~g~viG~V~V 109 (116)
T PF14827_consen 91 RAFAPVYD--SDGKVIGVVSV 109 (116)
T ss_dssp EEEEEEE---TTS-EEEEEEE
T ss_pred EEEEeeEC--CCCcEEEEEEE
Confidence 34689998 79999999974
No 206
>smart00594 UAS UAS domain.
Probab=51.79 E-value=31 Score=22.55 Aligned_cols=60 Identities=8% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhc---CCCEEEEEeCCCCC---------eeEEEEeHHHHHHH
Q 033339 51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH---NVGALVVVKPGEQK---------SVAGIITERGIFKA 118 (121)
Q Consensus 51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~---~~~~lpVvd~~~~~---------~lvGiVt~~Di~~~ 118 (121)
+.+..|.+.+... ++....+.+-.+..+++..+ +...+.+++ ..+ ++-|-++.++++..
T Consensus 50 l~~~~V~~~i~~~-------fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~--~~~g~~~~~~~~~~~G~~~~~~l~~~ 120 (122)
T smart00594 50 LCNEAVKSLIREN-------FIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVD--PRTGQRVIEWVGVVEGEISPEELMTF 120 (122)
T ss_pred ccCHHHHHHHHcC-------EEEEEecCCChhHHHHHHhcCcCCCCEEEEEe--cCCCceeEEEeccccCCCCHHHHHHh
Confidence 4566788888765 66655555555666666555 556677777 444 45566677777665
Q ss_pred h
Q 033339 119 C 119 (121)
Q Consensus 119 ~ 119 (121)
+
T Consensus 121 l 121 (122)
T smart00594 121 L 121 (122)
T ss_pred h
Confidence 4
No 207
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A ....
Probab=44.11 E-value=22 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=16.6
Q ss_pred HHhcCCCEEEEEeCCCCCeeEEE
Q 033339 87 MTQHNVGALVVVKPGEQKSVAGI 109 (121)
Q Consensus 87 m~~~~~~~lpVvd~~~~~~lvGi 109 (121)
....+.+.=||+| .+|+++||
T Consensus 100 ~~~~G~SGgpv~~--~~G~vvGi 120 (120)
T PF13365_consen 100 DTRPGSSGGPVFD--SDGRVVGI 120 (120)
T ss_dssp S-STTTTTSEEEE--TTSEEEEE
T ss_pred ccCCCcEeHhEEC--CCCEEEeC
Confidence 3456778889999 89999997
No 208
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=43.85 E-value=37 Score=20.16 Aligned_cols=16 Identities=6% Similarity=0.422 Sum_probs=13.1
Q ss_pred EEEEEeCCCCCeeEEEEe
Q 033339 94 ALVVVKPGEQKSVAGIIT 111 (121)
Q Consensus 94 ~lpVvd~~~~~~lvGiVt 111 (121)
+.||.+ ++|+++|++.
T Consensus 18 s~pi~~--~~g~~~Gvv~ 33 (81)
T PF02743_consen 18 SVPIYD--DDGKIIGVVG 33 (81)
T ss_dssp EEEEEE--TTTEEEEEEE
T ss_pred EEEEEC--CCCCEEEEEE
Confidence 478888 7899999875
No 209
>PF14044 NETI: NETI protein
Probab=43.24 E-value=33 Score=20.10 Aligned_cols=25 Identities=16% Similarity=0.275 Sum_probs=20.6
Q ss_pred EEEcCCCcHHHHHHHHHhcCCCEEEEE
Q 033339 72 LWCTTDDTVYDAVKSMTQHNVGALVVV 98 (121)
Q Consensus 72 ~~v~~~~~l~ea~~~m~~~~~~~lpVv 98 (121)
+.+.++.|+.+.++.|.+.++ .||-
T Consensus 2 FeV~enETI~~CL~RM~~eGY--~Pvr 26 (57)
T PF14044_consen 2 FEVEENETISDCLARMKKEGY--MPVR 26 (57)
T ss_pred eeccCCCcHHHHHHHHHHcCC--Ccee
Confidence 457899999999999999887 5554
No 210
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=41.28 E-value=47 Score=28.34 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 76 TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 76 ~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
....+..+.+...+.+=.-++|+. +++++|+|..+|+++
T Consensus 411 ~p~~l~~~~~~vs~~GGTPL~V~~---~~~~~GVI~LkDivK 449 (681)
T COG2216 411 IPEDLDAAVDEVSRLGGTPLVVVE---NGRILGVIYLKDIVK 449 (681)
T ss_pred CCHHHHHHHHHHHhcCCCceEEEE---CCEEEEEEEehhhcc
Confidence 344677888888888888899995 899999999999864
No 211
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=33.96 E-value=71 Score=18.27 Aligned_cols=37 Identities=11% Similarity=0.103 Sum_probs=26.4
Q ss_pred cCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHH
Q 033339 75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114 (121)
Q Consensus 75 ~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~D 114 (121)
....++.+.++...+.+++.+.++| .+.+-|.....+
T Consensus 12 ~~~~~~~~~~~~a~~~g~~~v~iTD---h~~~~~~~~~~~ 48 (67)
T smart00481 12 DGALSPEELVKRAKELGLKAIAITD---HGNLFGAVEFYK 48 (67)
T ss_pred cccCCHHHHHHHHHHcCCCEEEEee---CCcccCHHHHHH
Confidence 4566788888888888888888886 555555544433
No 212
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A ....
Probab=30.54 E-value=68 Score=20.40 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=23.3
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCE---EEEEeCCCCCeeEEEEeH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGA---LVVVKPGEQKSVAGIITE 112 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~---lpVvd~~~~~~lvGiVt~ 112 (121)
++.+..+.+.........+.++.+ +|+.. +++++|+++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~s~l~vPl~~---~~~~~Gvl~l 120 (148)
T PF13185_consen 79 PIIINDDDSSFPPWELARHPGIRSILCVPLRS---GGEVIGVLSL 120 (148)
T ss_dssp -EEESCCCGGGSTTHHHCCTT-SEEEEEEEEE---TTEEEEEEEE
T ss_pred eEEEeCccccccchhhhccccCCEEEEEEEeE---CCEEEEEEEE
Confidence 566662222222245666666665 88886 6799999974
No 213
>PRK13482 DNA integrity scanning protein DisA; Provisional
Probab=29.68 E-value=66 Score=25.70 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=26.2
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEe
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVK 99 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd 99 (121)
...+.|++++.++++.+.+.+++++.|+.
T Consensus 9 l~~~APGT~Lr~~l~~i~~~k~GALIVi~ 37 (352)
T PRK13482 9 LKLVAPGTPLREGLERILRARTGALIVLG 37 (352)
T ss_pred HHHhCCCchHHHHHHHHHHhCcceEEEEe
Confidence 34578999999999999999999999996
No 214
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=29.36 E-value=79 Score=23.91 Aligned_cols=34 Identities=6% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEE
Q 033339 76 TDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109 (121)
Q Consensus 76 ~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGi 109 (121)
.+.++.+..+.+.+.++..+..+|-+.+|.+-|+
T Consensus 145 s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G~ 178 (241)
T COG0106 145 SGVELEELAKRLEEVGLAHILYTDISRDGTLSGP 178 (241)
T ss_pred ccCCHHHHHHHHHhcCCCeEEEEecccccccCCC
Confidence 4458999999999999999999987788888875
No 215
>PRK00028 infC translation initiation factor IF-3; Reviewed
Probab=29.01 E-value=60 Score=23.22 Aligned_cols=27 Identities=11% Similarity=0.294 Sum_probs=21.6
Q ss_pred CCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 91 NVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 91 ~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
....+-|++ ++|+.+|+++..+.++..
T Consensus 18 ~~~~Vrli~--~dG~~lgv~~~~eAl~~A 44 (177)
T PRK00028 18 RAREVRLIG--DDGEQLGIVSTREALELA 44 (177)
T ss_pred CCCEEEEEC--CCCcCCCceeHHHHHHHH
Confidence 456677888 889999999999987653
No 216
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=28.59 E-value=66 Score=22.29 Aligned_cols=19 Identities=32% Similarity=0.448 Sum_probs=16.8
Q ss_pred CCCCeeEEEEeHHHHHHHh
Q 033339 101 GEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 101 ~~~~~lvGiVt~~Di~~~~ 119 (121)
+++|++-|-||..||..++
T Consensus 84 ge~gklfGSVt~~~I~~~l 102 (148)
T TIGR00158 84 GDEGKLFGSITTKQIADAL 102 (148)
T ss_pred CCCCeEEEeECHHHHHHHH
Confidence 3689999999999998776
No 217
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=28.11 E-value=27 Score=21.91 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=16.8
Q ss_pred CCCeeEEEEeHHHHHHHhh
Q 033339 102 EQKSVAGIITERGIFKACH 120 (121)
Q Consensus 102 ~~~~lvGiVt~~Di~~~~~ 120 (121)
++|++.|=||..|+..++.
T Consensus 24 ~~gklfGSVt~~dIa~~l~ 42 (87)
T PF03948_consen 24 ENGKLFGSVTSKDIAKALK 42 (87)
T ss_dssp SCSSBSSEBSHHHHHHHHH
T ss_pred CCcceecCcCHHHHHHHHH
Confidence 6799999999999998764
No 218
>COG1623 Predicted nucleic-acid-binding protein (contains the HHH domain) [General function prediction only]
Probab=27.81 E-value=45 Score=26.19 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=26.8
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEe
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVK 99 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd 99 (121)
...+.|++++.+.++.+.+.+.+++.|+.
T Consensus 15 l~~vAPGT~LR~Gld~Ilra~tGaLIvlG 43 (349)
T COG1623 15 LKRVAPGTPLRDGLDNILRANTGALIVLG 43 (349)
T ss_pred HHHhCCCCchHHHHHHHHhccCCeEEEEe
Confidence 56788999999999999999999999996
No 219
>PRK00137 rplI 50S ribosomal protein L9; Reviewed
Probab=27.33 E-value=1.2e+02 Score=20.83 Aligned_cols=20 Identities=30% Similarity=0.453 Sum_probs=17.1
Q ss_pred CCCCeeEEEEeHHHHHHHhh
Q 033339 101 GEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 101 ~~~~~lvGiVt~~Di~~~~~ 120 (121)
+++|++-|-||..||...+.
T Consensus 84 g~~gklfGsVt~~~I~~~l~ 103 (147)
T PRK00137 84 GEDGKLFGSVTTKDIAEALK 103 (147)
T ss_pred CCCCeEEeeeCHHHHHHHHH
Confidence 36899999999999998763
No 220
>CHL00199 infC translation initiation factor 3; Provisional
Probab=26.76 E-value=70 Score=23.14 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 91 NVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 91 ~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
....+-|++ ++|+.+|+++..+.++..
T Consensus 23 ~~~~VrlI~--~~G~~lGv~~~~eAl~~A 49 (182)
T CHL00199 23 RFPKVRVID--DSGEQLGIFTSEQAIQLA 49 (182)
T ss_pred CCCEEEEEC--CCCcCCCceeHHHHHHHH
Confidence 456788888 899999999999987653
No 221
>COG0290 InfC Translation initiation factor 3 (IF-3) [Translation, ribosomal structure and biogenesis]
Probab=25.65 E-value=1.2e+02 Score=21.92 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=22.3
Q ss_pred cCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339 90 HNVGALVVVKPGEQKSVAGIITERGIFKA 118 (121)
Q Consensus 90 ~~~~~lpVvd~~~~~~lvGiVt~~Di~~~ 118 (121)
-....+-+++ ++|.-+||++..+.+..
T Consensus 16 Ir~~evrlIg--~~GeqlGiv~~~eAL~l 42 (176)
T COG0290 16 IRAREVRLIG--EDGEQLGIVSIEEALKL 42 (176)
T ss_pred ccccEEEEEC--CCCcEEcceeHHHHHHH
Confidence 3556677888 89999999999998765
No 222
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=25.04 E-value=84 Score=19.83 Aligned_cols=28 Identities=7% Similarity=-0.026 Sum_probs=23.8
Q ss_pred ceEEEcCCCcHHHHHHHHHhcCCCEEEE
Q 033339 70 SWLWCTTDDTVYDAVKSMTQHNVGALVV 97 (121)
Q Consensus 70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpV 97 (121)
.+.+++.+.-+.+|.++...++-+.|.+
T Consensus 51 Dp~tiSS~~EL~EA~rl~~~n~~~~l~i 78 (83)
T cd06404 51 DPCTISSQMELEEAFRLYELNKDSELNI 78 (83)
T ss_pred CceeecCHHHHHHHHHHHHhcCcccEEE
Confidence 4899999999999999998887776654
No 223
>PF12282 H_kinase_N: Signal transduction histidine kinase; InterPro: IPR022066 This domain is found in bacteria. This domain is about 150 amino acids in length. This domain is found associated with PF07568 from PFAM, PF08448 from PFAM, PF02518 from PFAM. This domain has a single completely conserved residue P that may be functionally important. This family is mostly annotated as a histidine kinase involved in signal transduction but there is little published evidence to support this. ; PDB: 2YKH_B 2YKF_A.
Probab=24.75 E-value=96 Score=21.21 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=15.6
Q ss_pred CCCEEEEEeCCCCCeeEEEEeH
Q 033339 91 NVGALVVVKPGEQKSVAGIITE 112 (121)
Q Consensus 91 ~~~~lpVvd~~~~~~lvGiVt~ 112 (121)
....+||.+ +++++|+++.
T Consensus 105 ~~~~~PI~~---~~~vIaVl~~ 123 (145)
T PF12282_consen 105 RQEVVPIRR---NGRVIAVLIR 123 (145)
T ss_dssp EEEEEEEEE---TTEEEEEEEE
T ss_pred EEEEEEEEE---CCEEEEEEEE
Confidence 356899997 6799999994
No 224
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=24.70 E-value=1.3e+02 Score=16.48 Aligned_cols=45 Identities=4% Similarity=0.008 Sum_probs=26.3
Q ss_pred eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCe-eEEEEeHHHHHHH
Q 033339 71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS-VAGIITERGIFKA 118 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~-lvGiVt~~Di~~~ 118 (121)
+..++.+..-..+.+....++...+|++- -+|+ +.| .+...+.+.
T Consensus 27 ~~~vdi~~~~~~~~~~~~~~~~~~vP~~~--~~~~~~~g-~~~~~i~~~ 72 (74)
T TIGR02196 27 FEEIDVEKDSAAREEVLKVLGQRGVPVIV--IGHKIIVG-FDPEKLDQL 72 (74)
T ss_pred EEEEeccCCHHHHHHHHHHhCCCcccEEE--ECCEEEee-CCHHHHHHH
Confidence 44455444434444455667888999885 2344 446 577666554
No 225
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=24.31 E-value=86 Score=19.43 Aligned_cols=36 Identities=8% Similarity=0.269 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCCEEEEEeCCCCCe----eEEEEeHHHHHHHh
Q 033339 82 DAVKSMTQHNVGALVVVKPGEQKS----VAGIITERGIFKAC 119 (121)
Q Consensus 82 ea~~~m~~~~~~~lpVvd~~~~~~----lvGiVt~~Di~~~~ 119 (121)
+..+.+.-++...+.+.| ++|+ +.|.++..++...+
T Consensus 73 ~l~~~~~v~gtPt~~~~d--~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 73 ELAQRYGVNGTPTIVFLD--KDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHTT--SSSEEEECT--TTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHcCCCccCEEEEEc--CCCCEEEEecCCCCHHHHHhhC
Confidence 445555556667777777 5655 66778888877653
No 226
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=23.31 E-value=70 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=16.7
Q ss_pred cCCCEEEEEeCCCCCeeEEEEeH
Q 033339 90 HNVGALVVVKPGEQKSVAGIITE 112 (121)
Q Consensus 90 ~~~~~lpVvd~~~~~~lvGiVt~ 112 (121)
.+-+.=|++| .+|+++||.+.
T Consensus 197 ~GnSGGpl~n--~~G~vIGI~~~ 217 (351)
T TIGR02038 197 AGNSGGALIN--TNGELVGINTA 217 (351)
T ss_pred CCCCcceEEC--CCCeEEEEEee
Confidence 3446679998 89999999873
No 227
>CHL00160 rpl9 ribosomal protein L9; Provisional
Probab=23.19 E-value=69 Score=22.38 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.4
Q ss_pred CCCeeEEEEeHHHHHHHh
Q 033339 102 EQKSVAGIITERGIFKAC 119 (121)
Q Consensus 102 ~~~~lvGiVt~~Di~~~~ 119 (121)
++|++.|-||..||..++
T Consensus 91 e~gklfGSVt~~dIa~~l 108 (153)
T CHL00160 91 ENNQIFGSVTEKEISQII 108 (153)
T ss_pred CCCeEEcccCHHHHHHHH
Confidence 689999999999998776
No 228
>COG1956 GAF domain-containing protein [Signal transduction mechanisms]
Probab=22.61 E-value=90 Score=22.21 Aligned_cols=17 Identities=12% Similarity=0.333 Sum_probs=14.2
Q ss_pred EEEEEeCCCCCeeEEEEeHH
Q 033339 94 ALVVVKPGEQKSVAGIITER 113 (121)
Q Consensus 94 ~lpVvd~~~~~~lvGiVt~~ 113 (121)
.+||.. +|+++|++...
T Consensus 118 VvPi~~---~g~~iGvlDiD 134 (163)
T COG1956 118 VVPIFK---DGKLIGVLDID 134 (163)
T ss_pred EEEEEE---CCEEEEEEecC
Confidence 689995 89999999754
No 229
>PF00944 Peptidase_S3: Alphavirus core protein ; InterPro: IPR000930 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. Togavirin, also known as Sindbis virus core endopeptidase, is a serine protease resident at the N terminus of the p130 polyprotein of togaviruses []. The endopeptidase signature identifies the peptidase as belonging to the MEROPS peptidase family S3 (togavirin family, clan PA(S)). The polyprotein also includes structural proteins for the nucleocapsid core and for the glycoprotein spikes []. Togavirin is only active while part of the polyprotein, cleavage at a Trp-Ser bond resulting in total lack of activity []. Mutagenesis studies have identified the location of the His-Asp-Ser catalytic triad, and X-ray studies have revealed the protein fold to be similar to that of chymotrypsin [, ].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YEW_D 1EP5_A 3J0C_F 1EP6_C 1WYK_D 1DYL_A 1VCQ_B 1VCP_B 1LD4_D 1KXA_A ....
Probab=22.02 E-value=88 Score=21.84 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=16.9
Q ss_pred HhcCCCEEEEEeCCCCCeeEEEE
Q 033339 88 TQHNVGALVVVKPGEQKSVAGII 110 (121)
Q Consensus 88 ~~~~~~~lpVvd~~~~~~lvGiV 110 (121)
-..+-+.-|+.| +.|+++|||
T Consensus 103 g~~GDSGRpi~D--NsGrVVaIV 123 (158)
T PF00944_consen 103 GKPGDSGRPIFD--NSGRVVAIV 123 (158)
T ss_dssp -STTSTTEEEES--TTSBEEEEE
T ss_pred CCCCCCCCccCc--CCCCEEEEE
Confidence 345677889998 789999998
No 230
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=21.23 E-value=1.8e+02 Score=20.85 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=32.7
Q ss_pred CCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339 77 DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117 (121)
Q Consensus 77 ~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~ 117 (121)
...+-+|+..+.+.+...++|+| ..|--.|..+..+...
T Consensus 33 ~~g~i~al~~l~~~gy~lVvvTN--QsGi~rgyf~~~~f~~ 71 (181)
T COG0241 33 IPGVIPALLKLQRAGYKLVVVTN--QSGIGRGYFTEADFDK 71 (181)
T ss_pred CccHHHHHHHHHhCCCeEEEEEC--CCCccccCccHHHHHH
Confidence 34678899999999999999998 7888889998888654
No 231
>PRK10898 serine endoprotease; Provisional
Probab=21.20 E-value=83 Score=24.73 Aligned_cols=20 Identities=25% Similarity=0.267 Sum_probs=16.5
Q ss_pred cCCCEEEEEeCCCCCeeEEEEe
Q 033339 90 HNVGALVVVKPGEQKSVAGIIT 111 (121)
Q Consensus 90 ~~~~~lpVvd~~~~~~lvGiVt 111 (121)
.+-+.=|++| .+|+++||.+
T Consensus 197 ~GnSGGPl~n--~~G~vvGI~~ 216 (353)
T PRK10898 197 HGNSGGALVN--SLGELMGINT 216 (353)
T ss_pred CCCCcceEEC--CCCeEEEEEE
Confidence 3556779999 8999999987
No 232
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases. cGMP-dependent 3',5'-cyclic phosphodiesterase (3.1.4.17 from EC) catalyses the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. A phytochrome is a regulatory photoreceptor which exists in 2 forms that are reversibly interconvertible by light, the PR form that absorbs maximally in the red region of the spectrum, and the PFR form that absorbs maximally in the far-red region. This domain is also found in NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.; GO: 0005515 protein binding; PDB: 2Y8H_A 3DBA_B 3CI6_A 3E0Y_B 2W3G_B 2W3D_A 2W3E_A 2Y79_B 2W3H_A 2W3F_A ....
Probab=20.64 E-value=1.3e+02 Score=19.11 Aligned_cols=25 Identities=8% Similarity=0.240 Sum_probs=16.7
Q ss_pred HHHHhcCCCEE---EEEeCCCCCeeEEEEeH
Q 033339 85 KSMTQHNVGAL---VVVKPGEQKSVAGIITE 112 (121)
Q Consensus 85 ~~m~~~~~~~l---pVvd~~~~~~lvGiVt~ 112 (121)
..+.+.++..+ |+. .+|+++|+++.
T Consensus 99 ~~~~~~~~~s~l~vPi~---~~g~~~G~l~l 126 (154)
T PF01590_consen 99 PFLAEYGVRSYLCVPII---SGGRLIGVLSL 126 (154)
T ss_dssp HHHHTTTESEEEEEEEE---ETTEEEEEEEE
T ss_pred cccccccCceeeEeeee---cccCcEEEEEE
Confidence 34456666654 544 48999999874
No 233
>PF04459 DUF512: Protein of unknown function (DUF512); InterPro: IPR007549 This is a domain of uncharacterised prokaryotic proteins. It is often found C-terminal to the radical SAM domain (IPR007197 from INTERPRO).
Probab=20.61 E-value=2.4e+02 Score=20.63 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=20.1
Q ss_pred CCCEEEEEeC--CCCCeeEEEEeHHHHHHHhh
Q 033339 91 NVGALVVVKP--GEQKSVAGIITERGIFKACH 120 (121)
Q Consensus 91 ~~~~lpVvd~--~~~~~lvGiVt~~Di~~~~~ 120 (121)
.+..+||.|+ +.+=.+.|++|-+|+++.+.
T Consensus 126 ~v~V~~V~N~fFG~~ItVaGLLTg~Dii~~L~ 157 (204)
T PF04459_consen 126 EVEVVPVKNRFFGGTITVAGLLTGQDIIEQLK 157 (204)
T ss_pred eEEEEEeecCCCCCCeEEeeCccHHHHHHHhC
Confidence 4556666651 11225999999999988763
No 234
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=20.57 E-value=1.3e+02 Score=18.17 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=16.5
Q ss_pred eEEEcCCCcHHHHHHHHHh
Q 033339 71 WLWCTTDDTVYDAVKSMTQ 89 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~ 89 (121)
-+.|..++++..|++.|..
T Consensus 3 ~v~V~ene~~d~ALrrFKr 21 (67)
T COG0828 3 QVKVRENEPLDKALRRFKR 21 (67)
T ss_pred eeeecCCChHHHHHHHHHH
Confidence 4789999999999998865
No 235
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=20.10 E-value=2.2e+02 Score=17.29 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeH
Q 033339 80 VYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112 (121)
Q Consensus 80 l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~ 112 (121)
.....+.+.+ .-..+.|.. .+++++|.+..
T Consensus 32 ~~~~~~~~~~-~~~~~~v~~--~~~~ivG~~~~ 61 (117)
T PF13673_consen 32 PEDLEEYLEE-GSHTIFVAE--EGGEIVGFAWL 61 (117)
T ss_dssp HHHHHHHHCT-CCCEEEEEE--ETTEEEEEEEE
T ss_pred HHHHHHHHHh-cCCEEEEEE--ECCEEEEEEEE
Confidence 3344444444 335666666 68999999864
No 236
>PF11112 PyocinActivator: Pyocin activator protein PrtN
Probab=20.06 E-value=2.3e+02 Score=17.37 Aligned_cols=56 Identities=7% Similarity=0.102 Sum_probs=38.8
Q ss_pred CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339 52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119 (121)
Q Consensus 52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~ 119 (121)
...+++++...= + ++.+...+.++.....+ .+||+.-++-.+=--.|+..|+..++
T Consensus 13 ~~IpL~~v~~~y-------f----~~lt~~~a~rk~~~g~l-plPv~rl~~SqKs~~~V~v~dLA~yi 68 (76)
T PF11112_consen 13 PVIPLEEVCEDY-------F----PHLTPKTAKRKANAGEL-PLPVFRLDDSQKSPKFVHVQDLAAYI 68 (76)
T ss_pred CCCcHHHHHHHH-------H----ccCCHHHHHHHHHCCCC-CCceeecCCcccCCceeeHHHHHHHH
Confidence 345666666552 2 45577899999999888 78998532334555688999988775
No 237
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=20.00 E-value=1.5e+02 Score=17.70 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=16.1
Q ss_pred eEEEcCCCcHHHHHHHHHhc
Q 033339 71 WLWCTTDDTVYDAVKSMTQH 90 (121)
Q Consensus 71 ~~~v~~~~~l~ea~~~m~~~ 90 (121)
.+.+.|+.|+.|++....+.
T Consensus 14 ~V~vrpg~ti~d~L~~~~~k 33 (71)
T PF02196_consen 14 VVQVRPGMTIRDALSKACKK 33 (71)
T ss_dssp EEEE-TTSBHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHH
Confidence 67899999999999887654
Done!