BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033340
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KZH|A Chain A, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|1KZH|B Chain B, Structure Of A Pyrophosphate-dependent Phosphofructokinase
From The Lyme Disease Spirochete Borrelia Burgdorferi
pdb|2F48|A Chain A, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
pdb|2F48|B Chain B, Crystal Structure Of A Novel Fructose 1,6-Bisphosphate And
Alf3 Containing Pyrophosphate-Dependent
Phosphofructo-1-Kinase Complex From Borrelia Burgdorferi
Length = 555
Score = 28.9 bits (63), Expect = 0.67, Method: Composition-based stats.
Identities = 9/34 (26%), Positives = 23/34 (67%)
Query: 86 QQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTED 119
Q++ + I +L N+LK+D ++ ++ E+++ +D
Sbjct: 8 QERQKYIPKLPNILKKDFNNISLVYGENTEAIQD 41
>pdb|2KWA|A Chain A, 1h, 13c And 15n Backbone And Side Chain Resonance
Assignments Of The N-Terminal Domain Of The Histidine
Kinase Inhibitor Kipi From Bacillus Subtilis
Length = 101
Score = 28.5 bits (62), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 38 GAELSRRVQNLLTVSRVQANSIGAGGSI-CLPGSTKIHEQSLADMQEVLQQQTEAIARLG 96
G E++ +V ++ + G I C+P T + DM EV + + I+
Sbjct: 22 GEEINEQVNGIVHAAAAYIEEQPFPGFIECIPAFTSL--TVFYDMYEVYKHLPQGISSPF 79
Query: 97 NVLKRDIRDMEIIMAEDSQMT 117
+KRD+ + +AED ++
Sbjct: 80 ESVKRDVEERLAEIAEDYEVN 100
>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|B Chain B, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|C Chain C, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|D Chain D, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|E Chain E, Crystal Structure Of Human Pas Kinase Bound To Adp
pdb|3DLS|F Chain F, Crystal Structure Of Human Pas Kinase Bound To Adp
Length = 335
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 84 VLQQQTEAIA--RLGNVLKRDIRDMEIIMAED 113
+ +Q A+ RL +++ RDI+D I++AED
Sbjct: 135 IFRQLVSAVGYLRLKDIIHRDIKDENIVIAED 166
>pdb|1VJB|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1VJB|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With 4-
Hydroxytamoxifen
pdb|1TFC|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|1TFC|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With A
Steroid Receptor Coactivator-1 Peptide
pdb|2P7A|A Chain A, Crystal Structure Of Estrogen Related Receptor G In
Complex With 3-Methyl Phenol
pdb|2P7G|A Chain A, X-Ray Structure Of Estrogen Related Receptor G In Complex
With Bisphenol A.
pdb|2P7Z|A Chain A, Estrogen Related Receptor Gamma In Complex With 4-Hydroxy-
Tamoxifen
Length = 251
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 GGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS 121
G + +PG + + SLAD +LQ I LG V + + E++ A+D M ED S
Sbjct: 74 GWAKHIPGFSTL---SLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQS 130
>pdb|1S9Q|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
pdb|1S9Q|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
4-Hydroxytamoxifen
Length = 251
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 GGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS 121
G + +PG + + SLAD +LQ I LG V + + E++ A+D M ED S
Sbjct: 74 GWAKHIPGFSTL---SLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQS 130
>pdb|1KV6|A Chain A, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|1KV6|B Chain B, X-Ray Structure Of The Orphan Nuclear Receptor Err3
Ligand- Binding Domain In The Constitutively Active
Conformation
pdb|2GP7|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|C Chain C, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GP7|D Chain D, Estrogen Related Receptor-Gamma Ligand Binding Domain
pdb|2GPO|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Synthetic Peptide From Rip140
pdb|2GPP|A Chain A, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPP|B Chain B, Estrogen Related Receptor-Gamma Ligand Binding Domain
Complexed With A Rip140 Peptide And Synthetic Ligand
Gsk4716
pdb|2GPU|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen
pdb|2GPV|A Chain A, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|B Chain B, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|C Chain C, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|D Chain D, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|E Chain E, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
pdb|2GPV|F Chain F, Estrogen Related Receptor-gamma Ligand Binding Domain
Complexed With 4-hydroxy-tamoxifen And A Smrt Peptide
Length = 230
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 GGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS 121
G + +PG + + SLAD +LQ I LG V + + E++ A+D M ED S
Sbjct: 53 GWAKHIPGFSTL---SLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQS 109
>pdb|1S9P|A Chain A, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|B Chain B, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|C Chain C, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
pdb|1S9P|D Chain D, Crystal Structure Of The Ligand-Binding Domain Of The
Estrogen-Related Receptor Gamma In Complex With
Diethylstilbestrol
Length = 227
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 GGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS 121
G + +PG + + SLAD +LQ I LG V + + E++ A+D M ED S
Sbjct: 50 GWAKHIPGFSTL---SLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQS 106
>pdb|2E2R|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol A
pdb|2ZAS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With 4-Alpha-Cumylphenol,
A Bisphenol A Derivative
pdb|2ZBS|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Apo Form
pdb|2ZKC|A Chain A, Crystal Structure Of Human Estrogen-Related Receptor Gamma
Ligand Binding Domain Complex With Bisphenol Z
Length = 244
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 GGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS 121
G + +PG + + SLAD +LQ I LG V + + E++ A+D M ED S
Sbjct: 66 GWAKHIPGFSTL---SLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQS 122
>pdb|2EWP|A Chain A, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|B Chain B, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|C Chain C, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|D Chain D, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
pdb|2EWP|E Chain E, Crystal Structure Of Estrogen Related Receptor-3
(Err-Gamma) Ligand Binding Domaind With Tamoxifen Analog
Gsk5182
Length = 226
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 62 GGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTEDVS 121
G + +PG + + SLAD +LQ I LG V + + E++ A+D M ED S
Sbjct: 49 GWAKHIPGFSTL---SLADQMSLLQSAWMEILILGVVYRSLSFEDELVYADDYIMDEDQS 105
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 68 PGSTKIHEQSLADM---QEVLQQQTEAIARLGNVL 99
PG KI EQS+ + E+ Q + +AR GN+L
Sbjct: 314 PGGPKIIEQSVRSLGISAELAAQSWDVLARFGNML 348
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Query: 68 PGSTKIHEQSLADM---QEVLQQQTEAIARLGNVL 99
PG KI EQS+ + E+ Q + +AR GN+L
Sbjct: 314 PGGPKIIEQSVRSLGISAELAAQSWDVLARFGNML 348
>pdb|2Z6B|A Chain A, Crystal Structure Analysis Of (Gp27-Gp5)3 Conjugated With
Fe(Iii) Protoporphyrin
Length = 584
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 41 LSRRVQNLLTVSRVQANSIGAG-----GSICLPGSTKIHEQSLADMQEVLQQQTE 90
+ + V+++ +++V + +G GSI + +T + E+ LADMQ ++ ++
Sbjct: 207 MKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSK 261
>pdb|1K28|A Chain A, The Structure Of The Bacteriophage T4 Cell-Puncturing
Device
Length = 584
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 41 LSRRVQNLLTVSRVQANSIGAG-----GSICLPGSTKIHEQSLADMQEVLQQQTE 90
+ + V+++ +++V + +G GSI + +T + E+ LADMQ ++ ++
Sbjct: 207 MKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSK 261
>pdb|1WTH|A Chain A, Crystal Structure Of Gp5-S351l Mutant And Gp27 Complex
Length = 584
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 41 LSRRVQNLLTVSRVQANSIGAG-----GSICLPGSTKIHEQSLADMQEVLQQQTE 90
+ + V+++ +++V + +G GSI + +T + E+ LADMQ ++ ++
Sbjct: 207 MKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSK 261
>pdb|1PDL|A Chain A, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
pdb|1PDL|B Chain B, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
pdb|1PDL|C Chain C, Fitting Of Gp5 In The Cryoem Reconstruction Of The
Bacteriophage T4 Baseplate
Length = 575
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 41 LSRRVQNLLTVSRVQANSIGAG-----GSICLPGSTKIHEQSLADMQEVLQQQTE 90
+ + V+++ +++V + +G GSI + +T + E+ LADMQ ++ ++
Sbjct: 207 MKQPVRDMAQINKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSK 261
>pdb|2JFN|A Chain A, Crystal Structure Of Escherichia Coli Glutamate Racemase
In Complex With L-Glutamate And Activator Udp-Murnac-Ala
Length = 285
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 33 QLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICL---PGSTKIHEQSLADMQEVLQQQT 89
+L SGA ++RR LL A S A + C+ PG+ EQ L +Q +
Sbjct: 223 RLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPGA----EQLLPVLQRYGFETL 278
Query: 90 EAIARLG 96
E +A LG
Sbjct: 279 EKLAVLG 285
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,720,530
Number of Sequences: 62578
Number of extensions: 80533
Number of successful extensions: 212
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 26
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)