BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033340
         (121 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q48DU8|HOAE1_PSE14 Effector protein hopAE1 OS=Pseudomonas syringae pv. phaseolicola
           (strain 1448A / Race 6) GN=hopAE1 PE=3 SV=1
          Length = 912

 Score = 30.4 bits (67), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 23/96 (23%), Positives = 47/96 (48%), Gaps = 6/96 (6%)

Query: 29  SITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIH-----EQSLADMQE 83
           S+ R L    + L+R + +LLT++ +   ++GA   +    +   H     +Q  AD+ +
Sbjct: 150 SVAR-LTARPSSLARAMADLLTLTHLDPETLGAEPPVISSYTLFSHFVRTAKQRTADLND 208

Query: 84  VLQQQTEAIARLGNVLKRDIRDMEIIMAEDSQMTED 119
            LQ+Q +A+  L       + D+E++      +TE+
Sbjct: 209 SLQRQPDAVVSLLRSHADTLNDLEMLPGALQALTEN 244


>sp|P59014|MOACB_CHLTE Molybdenum cofactor biosynthesis bifunctional protein OS=Chlorobium
           tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=moaCB
           PE=3 SV=1
          Length = 312

 Score = 29.6 bits (65), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 30  ITRQLKGSGAELSRRVQN---LLTVSRVQANSIGAGGSICLPGSTKIHEQSL 78
            TR+L G   EL R  Q       +SR+ A  IG    +CLPGST   + +L
Sbjct: 241 FTRRLPGVEQELLRWGQTKTRTAMLSRLAAGVIGNTVVVCLPGSTSAAKDAL 292


>sp|Q15Q09|RSMH_PSEA6 Ribosomal RNA small subunit methyltransferase H
           OS=Pseudoalteromonas atlantica (strain T6c / ATCC
           BAA-1087) GN=rsmH PE=3 SV=1
          Length = 311

 Score = 29.6 bits (65), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 14  LPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRV 54
           LP+M+ E++  + + +I + +K S  ELSR V+   +V RV
Sbjct: 267 LPIMQAEIDSHKAMKAIGKAIKPSSDELSRNVRARSSVLRV 307


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.129    0.334 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,961,718
Number of Sequences: 539616
Number of extensions: 1149862
Number of successful extensions: 3724
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3703
Number of HSP's gapped (non-prelim): 36
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)