Query 033340
Match_columns 121
No_of_seqs 34 out of 36
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:13:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t98_A Nuclear pore complex pr 99.7 9.5E-19 3.2E-23 112.4 5.0 49 57-109 3-51 (51)
2 1l8d_A DNA double-strand break 81.6 9.5 0.00032 25.4 9.5 82 19-108 11-92 (112)
3 1mz9_A Cartilage oligomeric ma 60.6 15 0.00052 21.8 4.2 27 75-101 15-41 (45)
4 3v2d_2 50S ribosomal protein L 55.9 21 0.00072 23.2 4.6 39 50-92 33-71 (72)
5 3iyk_A VP5; icosahedral virus; 55.4 37 0.0013 30.0 7.4 87 15-103 87-180 (526)
6 3zbh_A ESXA; unknown function, 54.5 30 0.001 21.5 5.1 39 69-107 5-43 (99)
7 3swy_A Cyclic nucleotide-gated 52.0 12 0.0004 23.0 2.7 30 21-50 15-44 (46)
8 3j21_W 50S ribosomal protein L 50.9 36 0.0012 22.0 5.1 40 51-94 27-67 (72)
9 1cq0_A Protein (NEW hypothalam 45.5 8 0.00027 21.7 1.1 19 38-56 4-22 (28)
10 1p9i_A Cortexillin I/GCN4 hybr 44.3 12 0.00042 21.1 1.7 27 26-52 3-29 (31)
11 4ioe_A Secreted protein ESXB; 42.0 59 0.002 20.0 5.2 38 69-106 5-42 (93)
12 3swf_A CGMP-gated cation chann 41.6 28 0.00096 23.3 3.5 36 21-56 17-52 (74)
13 3s84_A Apolipoprotein A-IV; fo 41.6 49 0.0017 26.0 5.6 74 21-105 179-267 (273)
14 1r7j_A Conserved hypothetical 39.9 25 0.00085 23.1 3.1 46 3-49 40-91 (95)
15 3i9v_4 NADH-quinone oxidoreduc 39.2 30 0.001 29.0 4.1 53 44-101 158-210 (409)
16 1g6u_A Domain swapped dimer; d 38.3 63 0.0022 19.7 4.4 36 5-48 10-46 (48)
17 2x06_A L-sulfolactate dehydrog 37.3 49 0.0017 27.0 5.1 31 38-70 275-305 (344)
18 2vs0_A Virulence factor ESXA; 35.5 77 0.0026 19.4 5.4 38 70-107 3-40 (97)
19 3gwk_C SAG1039, putative uncha 35.3 82 0.0028 19.7 5.3 38 70-107 5-42 (98)
20 1ez3_A Syntaxin-1A; three heli 31.0 60 0.002 21.6 3.9 34 19-52 44-77 (127)
21 3i00_A HIP-I, huntingtin-inter 29.1 27 0.00091 24.9 1.9 33 18-50 22-54 (120)
22 3lap_A Arginine repressor; arg 28.9 5.2 0.00018 30.0 -2.0 35 77-113 36-70 (170)
23 3ghg_A Fibrinogen alpha chain; 28.8 2.1E+02 0.0073 25.5 7.9 58 21-87 113-187 (562)
24 1ecm_A Endo-oxabicyclic transi 28.4 1.3E+02 0.0045 19.9 5.8 34 21-57 8-41 (109)
25 1z6o_A Ferritin light chain; m 28.4 60 0.002 24.4 3.9 27 74-100 156-183 (212)
26 2d8d_A Aroag, phospho-2-dehydr 27.5 1.2E+02 0.0042 19.3 6.9 35 21-58 6-40 (90)
27 3v4g_A Arginine repressor; vib 26.6 6.5 0.00022 30.0 -1.8 35 77-113 49-84 (180)
28 2lr8_A CAsp8-associated protei 31.9 14 0.00049 24.6 0.0 27 25-51 37-63 (70)
29 1eum_A Ferritin 1; ECFTNA, met 24.4 1.1E+02 0.0036 21.4 4.4 28 74-101 113-140 (165)
30 1ug2_A 2610100B20RIK gene prod 24.0 1.1E+02 0.0039 21.3 4.3 29 26-54 57-86 (95)
31 1pzr_A Erythronolide synthase; 23.0 1.5E+02 0.005 18.6 4.4 31 17-51 27-57 (60)
32 2ve8_A FTSK, DNA translocase F 22.7 27 0.00092 23.1 0.9 14 2-15 43-56 (73)
33 3e6s_A Ferritin; iron storage, 22.5 1.2E+02 0.004 21.7 4.4 28 74-101 114-141 (168)
34 1r73_A TM1492, 50S ribosomal p 22.3 1.1E+02 0.0036 19.3 3.7 36 50-89 26-61 (66)
35 1rfm_A L-sulfolactate dehydrog 22.3 1.3E+02 0.0046 24.4 5.2 45 38-84 275-331 (344)
36 3efg_A Protein SLYX homolog; x 20.4 1.5E+02 0.0051 19.3 4.2 26 75-100 27-52 (78)
37 3r8s_Y 50S ribosomal protein L 20.2 27 0.00093 22.0 0.5 49 19-86 10-58 (63)
38 1m1j_A Fibrinogen alpha subuni 20.2 2.7E+02 0.0092 24.4 6.8 62 21-87 114-188 (491)
39 4i0x_B ESAT-6-like protein MAB 20.0 1.8E+02 0.0061 18.7 4.6 39 69-107 7-45 (103)
No 1
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=99.75 E-value=9.5e-19 Score=112.40 Aligned_cols=49 Identities=20% Similarity=0.363 Sum_probs=38.6
Q ss_pred cccCCCCCccCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 033340 57 NSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDMEII 109 (121)
Q Consensus 57 ~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQqeaia~L~~Vlk~D~rDl~iI 109 (121)
++++.++. .+|++||++++|||+||+|||+||++|++|||+|++||+||
T Consensus 3 ~~~a~~~~----~~y~lD~~~~~eik~~L~~QQ~g~~~Li~ivk~DleDL~iI 51 (51)
T 3t98_A 3 HFGAVKSE----EKYYIDADLLREIKQHLKQQQEGLSHLISIIKDDLEDIKLV 51 (51)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccccc----chhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC
Confidence 44555553 67999999999999999999999999999999999999997
No 2
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=81.57 E-value=9.5 Score=25.44 Aligned_cols=82 Identities=12% Similarity=0.142 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhcccCCCCCccCCCccccChhhHHHHHHHHHHHHHHHHHHHHH
Q 033340 19 GEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNV 98 (121)
Q Consensus 19 eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQqeaia~L~~V 98 (121)
+..+++.+|..+..... .++.++.++-..+.+-...++.++. .-..+|+....++....+.+...+..-...
T Consensus 11 ~~~~~~~~l~~L~~~~~----~l~~~i~~l~~~l~~l~~~g~~CPv----Cgs~l~~~~~~~~i~~~~~~l~~l~~~i~~ 82 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIG----ELKNKIGDLKTAIEELKKAKGKCPV----CGRELTDEHREELLSKYHLDLNNSKNTLAK 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCSEECTT----TCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhcCCCCCCC----CCCcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888776665 5888888888888887654444432 456788877777777777777777666666
Q ss_pred HhhhhHHHHH
Q 033340 99 LKRDIRDMEI 108 (121)
Q Consensus 99 lk~D~rDl~i 108 (121)
++..+..++-
T Consensus 83 l~~~i~~l~~ 92 (112)
T 1l8d_A 83 LIDRKSELER 92 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666553
No 3
>1mz9_A Cartilage oligomeric matrix protein; pentameric coiled-coil domain, protein binding; HET: VDY; 1.70A {Mus musculus} SCOP: h.1.7.1 PDB: 1vdf_A 1fbm_A
Probab=60.60 E-value=15 Score=21.80 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033340 75 EQSLADMQEVLQQQTEAIARLGNVLKR 101 (121)
Q Consensus 75 ~~sl~emk~~L~qQqeaia~L~~Vlk~ 101 (121)
...+.++++.+++|-+.++.|.+++-+
T Consensus 15 ~~~~~~~~~~~~qqvkE~~~lr~ti~e 41 (45)
T 1mz9_A 15 NAALQDVRELLRQQVKEITFLKNTVME 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHhhHHHHHHHHHHHHHhhHhh
Confidence 456788999999999999999888753
No 4
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=55.94 E-value=21 Score=23.18 Aligned_cols=39 Identities=15% Similarity=0.077 Sum_probs=26.9
Q ss_pred HHHHhhhcccCCCCCccCCCccccChhhHHHHHHHHHHHHHHH
Q 033340 50 TVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAI 92 (121)
Q Consensus 50 s~~Rmq~~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQqeai 92 (121)
...|+|...+.... |...+.=....+.|+.+|.+.+.++
T Consensus 33 f~LR~q~atgql~n----~~~ir~vRr~IARi~Tvl~er~~~~ 71 (72)
T 3v2d_2 33 MELRFQASIGQLSQ----NHKIRDLKRQIARLLTVLNEKRRQN 71 (72)
T ss_dssp HHHHHHHHTTCCCC----TTHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCCCC----cHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36788887666554 4666666778888888888766543
No 5
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=55.44 E-value=37 Score=29.99 Aligned_cols=87 Identities=17% Similarity=0.257 Sum_probs=48.2
Q ss_pred CCCchHHHHHHHHHHHHHHhcc------CchhhHHHHHHHHHHHHhhhc-ccCCCCCccCCCccccChhhHHHHHHHHHH
Q 033340 15 PLMKGEVELAEKLASITRQLKG------SGAELSRRVQNLLTVSRVQAN-SIGAGGSICLPGSTKIHEQSLADMQEVLQQ 87 (121)
Q Consensus 15 ~L~~eEe~L~~rL~~i~~ql~g------ap~qfkgRl~eLls~~Rmq~~-~~~~~g~~~~~~~~klD~~sl~emk~~L~q 87 (121)
||+|+|-.+..||..|..+.++ -......+.-+-|--++-..+ +.-.... =...|++=+-++.-+..+++-
T Consensus 87 PLsPgE~~~~~Kl~eLE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~--e~~q~~~LekAl~s~~~i~~~ 164 (526)
T 3iyk_A 87 PLSPGERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIE--DEKQFDILNKAVTSYNKILTE 164 (526)
T ss_pred CCCHhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988762 122233333333333332222 1111110 002355555556666666666
Q ss_pred HHHHHHHHHHHHhhhh
Q 033340 88 QTEAIARLGNVLKRDI 103 (121)
Q Consensus 88 Qqeaia~L~~Vlk~D~ 103 (121)
+.+-|.+|...|.+..
T Consensus 165 e~~~l~~L~~AL~kE~ 180 (526)
T 3iyk_A 165 EDLQMRRLATALQKEI 180 (526)
T ss_pred HHhHHHHHHHHHHHHH
Confidence 6666666666666543
No 6
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=54.46 E-value=30 Score=21.53 Aligned_cols=39 Identities=10% Similarity=0.218 Sum_probs=31.9
Q ss_pred CccccChhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 033340 69 GSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDME 107 (121)
Q Consensus 69 ~~~klD~~sl~emk~~L~qQqeaia~L~~Vlk~D~rDl~ 107 (121)
+.+++||+.+...-..+.....-|....+-|+..+..|.
T Consensus 5 ~~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~ 43 (99)
T 3zbh_A 5 GVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQ 43 (99)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999988887763
No 7
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=52.03 E-value=12 Score=22.98 Aligned_cols=30 Identities=13% Similarity=0.302 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 033340 21 VELAEKLASITRQLKGSGAELSRRVQNLLT 50 (121)
Q Consensus 21 e~L~~rL~~i~~ql~gap~qfkgRl~eLls 50 (121)
+.|-+||..+.++..++-.-+|.|+..|=.
T Consensus 15 d~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 15 DTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 568889999999997788889999987743
No 8
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.86 E-value=36 Score=22.02 Aligned_cols=40 Identities=8% Similarity=0.028 Sum_probs=29.3
Q ss_pred HHHhhhcccC-CCCCccCCCccccChhhHHHHHHHHHHHHHHHHH
Q 033340 51 VSRVQANSIG-AGGSICLPGSTKIHEQSLADMQEVLQQQTEAIAR 94 (121)
Q Consensus 51 ~~Rmq~~~~~-~~g~~~~~~~~klD~~sl~emk~~L~qQqeaia~ 94 (121)
..|+|...+. ... |...+.=....+-|+.+|.+.+-++.+
T Consensus 27 ~LR~q~atgq~l~n----~~~ir~vRr~IARi~Tvl~er~~~~~~ 67 (72)
T 3j21_W 27 KERGLLTMGTSLEN----PMVIRNLRRDIARLLTIKKEKLREREK 67 (72)
T ss_dssp HHHHHHHHCCSSCC----SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCC----cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789888766 454 466777778888899998887766543
No 9
>1cq0_A Protein (NEW hypothalamic neuropeptide/orexin- B28); obesity, human HCRT-2/OX-B,neuropeptide, solution structure, de novo protein; NMR {Homo sapiens} SCOP: j.6.1.1
Probab=45.55 E-value=8 Score=21.72 Aligned_cols=19 Identities=37% Similarity=0.375 Sum_probs=15.4
Q ss_pred chhhHHHHHHHHHHHHhhh
Q 033340 38 GAELSRRVQNLLTVSRVQA 56 (121)
Q Consensus 38 p~qfkgRl~eLls~~Rmq~ 56 (121)
|..|++||..||-.+|=|+
T Consensus 4 ~~~~q~RL~~LL~~s~n~A 22 (28)
T 1cq0_A 4 PPGLQGRLQRLLQASGNHA 22 (28)
T ss_dssp CSSHHHHHHHHHHHTTTSH
T ss_pred chhhHHHHHHHHHhccccc
Confidence 4559999999998887655
No 10
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=44.25 E-value=12 Score=21.13 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=18.4
Q ss_pred HHHHHHHHhccCchhhHHHHHHHHHHH
Q 033340 26 KLASITRQLKGSGAELSRRVQNLLTVS 52 (121)
Q Consensus 26 rL~~i~~ql~gap~qfkgRl~eLls~~ 52 (121)
+|.++.+.+..-..|+|.+|.+|++-+
T Consensus 3 qlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555434568999999998753
No 11
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=42.05 E-value=59 Score=20.03 Aligned_cols=38 Identities=18% Similarity=0.232 Sum_probs=32.9
Q ss_pred CccccChhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 033340 69 GSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDM 106 (121)
Q Consensus 69 ~~~klD~~sl~emk~~L~qQqeaia~L~~Vlk~D~rDl 106 (121)
+.+++||+.+...=..++.....|....+-|+..+..|
T Consensus 5 ~~i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 5 AEIKITPEELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999988888888877765
No 12
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=41.63 E-value=28 Score=23.27 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhh
Q 033340 21 VELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQA 56 (121)
Q Consensus 21 e~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~ 56 (121)
+.|.+||..+.++..++-.-+|.||..|=..++--.
T Consensus 17 d~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 17 DLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 578899999999998788889999999988888644
No 13
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=41.62 E-value=49 Score=26.02 Aligned_cols=74 Identities=22% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhc----cCchhhHHHHHHHHHHHHhhhcccCCCCCccCCCccccChhhHHHHHHHHHHHHHHHHHHH
Q 033340 21 VELAEKLASITRQLK----GSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLG 96 (121)
Q Consensus 21 e~L~~rL~~i~~ql~----gap~qfkgRl~eLls~~Rmq~~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQqeaia~L~ 96 (121)
++|+.+|.-....++ +..-+++..+.++.+++|-|...+...= +.| .++|..+|.++.+-+..=.
T Consensus 179 eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~~~~qq~e~f~~~~-----~p~------~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 179 EELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGGHLDQQVEEFRRRV-----EPY------GENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-----Hhh------HHHHHHHHHHHHHHHHHHh
Q ss_pred -----------HHHhhhhHH
Q 033340 97 -----------NVLKRDIRD 105 (121)
Q Consensus 97 -----------~Vlk~D~rD 105 (121)
+.+-+|++|
T Consensus 248 ~~~~~~~~~~~~~~~~d~~~ 267 (273)
T 3s84_A 248 GPHAGDVEGHLSFLEKDLRD 267 (273)
T ss_dssp SCC-----------------
T ss_pred CcchhhHHhhhhHHHHHHHH
No 14
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=39.88 E-value=25 Score=23.12 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=34.5
Q ss_pred hhhhhhccCC------CCCCCchHHHHHHHHHHHHHHhccCchhhHHHHHHHH
Q 033340 3 IVEALESKGC------RLPLMKGEVELAEKLASITRQLKGSGAELSRRVQNLL 49 (121)
Q Consensus 3 ~v~ale~~g~------~~~L~~eEe~L~~rL~~i~~ql~gap~qfkgRl~eLl 49 (121)
.++.|+.+|+ +|.||+.=.++.+.++.+...+. .=.++..+|.+++
T Consensus 40 ~l~~L~~~GLI~~~~~~~~LT~kG~~~l~~l~~~~~~l~-~l~~~e~~l~~~l 91 (95)
T 1r7j_A 40 YIKMLMDLEIIRQEGKQYMLTKKGEELLEDIRKFNEMRK-NMDQLKEKINSVL 91 (95)
T ss_dssp HHHHHHHTTSEEEETTEEEECHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCeEEECCeeEEChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHc
Confidence 5677777753 78999977778899999888887 4456666666665
No 15
>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_4* 2fug_4* 3iam_4* 3ias_4* 3m9s_4*
Probab=39.25 E-value=30 Score=28.96 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhcccCCCCCccCCCccccChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033340 44 RVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQTEAIARLGNVLKR 101 (121)
Q Consensus 44 Rl~eLls~~Rmq~~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQqeaia~L~~Vlk~ 101 (121)
++.+.++-.|++.+....|| -+.-+++...++++++|..-.+.+..+.+++.+
T Consensus 158 ~i~e~~~G~R~h~~~~~pGG-----v~~dl~~~~~~~i~~~l~~~~~~~~e~~~l~~~ 210 (409)
T 3i9v_4 158 DLFEWVTGQRFHHNYIRIGG-----VKEDLPEEFVPELKKLLEVLPHRIDEYEALFAE 210 (409)
T ss_dssp HHHHHHHSSSSSCCCBCSSB-----BSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCccccCceeeCC-----eecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56777888899888888887 356789999999999999888888888777654
No 16
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.25 E-value=63 Score=19.70 Aligned_cols=36 Identities=28% Similarity=0.502 Sum_probs=22.1
Q ss_pred hhhhccCCCCCCCchH-HHHHHHHHHHHHHhccCchhhHHHHHHH
Q 033340 5 EALESKGCRLPLMKGE-VELAEKLASITRQLKGSGAELSRRVQNL 48 (121)
Q Consensus 5 ~ale~~g~~~~L~~eE-e~L~~rL~~i~~ql~gap~qfkgRl~eL 48 (121)
.||...||. ||| +.|...|+++...+. -++.+++.|
T Consensus 10 qalkkegfs----peelaaleselqalekkla----alksklqal 46 (48)
T 1g6u_A 10 QALKKEGFS----PEELAALESELQALEKKLA----ALKSKLQAL 46 (48)
T ss_dssp HHHHHTTCS----HHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHcCCC----HHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 466666765 765 456677777776664 255555543
No 17
>2x06_A L-sulfolactate dehydrogenase; oxidoreductase, hyperthermostable, coenzyme M, methanogens, coenzyme M biosynthesis; HET: NAD; 2.50A {Methanocaldococcus jannaschii}
Probab=37.33 E-value=49 Score=27.03 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHHHhhhcccCCCCCccCCCc
Q 033340 38 GAELSRRVQNLLTVSRVQANSIGAGGSICLPGS 70 (121)
Q Consensus 38 p~qfkgRl~eLls~~Rmq~~~~~~~g~~~~~~~ 70 (121)
+..|+.|+.+++..+|-.-. +.+..||+|+.
T Consensus 275 ~~~f~~~~~~~~~~l~~~~~--a~g~~V~~PGe 305 (344)
T 2x06_A 275 KEEFKRKVDELLDEIKNSEP--AEGFEILIPGE 305 (344)
T ss_dssp HHHHHHHHHHHHHHHHTSCB--CSSCCCCCTTH
T ss_pred HHHHHHHHHHHHHHHHcCCC--CCCCeeeCCCh
Confidence 35789999999998886544 34446899984
No 18
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=35.54 E-value=77 Score=19.44 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=32.6
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 033340 70 STKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDME 107 (121)
Q Consensus 70 ~~klD~~sl~emk~~L~qQqeaia~L~~Vlk~D~rDl~ 107 (121)
.+++||+.+...-.-+.....-|....+-|+..+..|.
T Consensus 3 ~i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~ 40 (97)
T 2vs0_A 3 MIKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIA 40 (97)
T ss_dssp CBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999888888888877664
No 19
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=35.26 E-value=82 Score=19.68 Aligned_cols=38 Identities=11% Similarity=0.230 Sum_probs=33.0
Q ss_pred ccccChhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 033340 70 STKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDME 107 (121)
Q Consensus 70 ~~klD~~sl~emk~~L~qQqeaia~L~~Vlk~D~rDl~ 107 (121)
.++|||+.+...=..++....-|....+-|+..+..|.
T Consensus 5 ~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~ 42 (98)
T 3gwk_C 5 QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVID 42 (98)
T ss_dssp HBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999988888877664
No 20
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=31.05 E-value=60 Score=21.56 Aligned_cols=34 Identities=9% Similarity=0.236 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Q 033340 19 GEVELAEKLASITRQLKGSGAELSRRVQNLLTVS 52 (121)
Q Consensus 19 eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls~~ 52 (121)
.+..++.+|+.+..+++.-...+++||..|=...
T Consensus 44 ~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 44 PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567999999999999878888999999886543
No 21
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.11 E-value=27 Score=24.87 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=23.1
Q ss_pred chHHHHHHHHHHHHHHhccCchhhHHHHHHHHH
Q 033340 18 KGEVELAEKLASITRQLKGSGAELSRRVQNLLT 50 (121)
Q Consensus 18 ~eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls 50 (121)
.+=+.|+..|+.+..+-.-...+|++||+.|=+
T Consensus 22 reie~lk~ele~l~~E~q~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 22 REISGLKAQLENMKTESQRVVLQLKGHVSELEA 54 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777776665577888888887743
No 22
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=28.90 E-value=5.2 Score=30.01 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Q 033340 77 SLADMQEVLQQQTEAIARLGNVLKRDIRDMEIIMAED 113 (121)
Q Consensus 77 sl~emk~~L~qQqeaia~L~~Vlk~D~rDl~iI~~~~ 113 (121)
+++|+.+.|+.+ |+..=+.+|-||++.|++++--+
T Consensus 36 tQeEL~~~L~~~--Gi~vTQATlSRDikEL~lvKv~~ 70 (170)
T 3lap_A 36 SQNELAALLAAE--GIEVTQATLSRDLEELGAVKLRG 70 (170)
T ss_dssp SHHHHHHHHHHT--TCCCCHHHHHHHHHHHTCEEECC
T ss_pred CHHHHHHHHHHc--CCCcCchhHHHHHHHcCcEEeec
Confidence 467788887765 77777899999999999987543
No 23
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.81 E-value=2.1e+02 Score=25.45 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhc-----------------ccCCCCCccCCCccccChhhHHHHHH
Q 033340 21 VELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQAN-----------------SIGAGGSICLPGSTKIHEQSLADMQE 83 (121)
Q Consensus 21 e~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~-----------------~~~~~g~~~~~~~~klD~~sl~emk~ 83 (121)
++|+.+++.|...|+ .|| .++..|=+.+|-|+. .-|+.. ..|+||-++-++++.
T Consensus 113 ~ELRRrIqyLKekVd---nQl-snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~-----~~~~vd~~sY~~~QK 183 (562)
T 3ghg_A 113 EDLRSRIEVLKRKVI---EKV-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRA-----LAREVDLKDYEDQQK 183 (562)
T ss_dssp HHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCC-----CCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch-----heeecchHHHHHHHH
Confidence 368888888887776 455 555555554443332 123433 469999998888776
Q ss_pred HHHH
Q 033340 84 VLQQ 87 (121)
Q Consensus 84 ~L~q 87 (121)
-|.|
T Consensus 184 QLeQ 187 (562)
T 3ghg_A 184 QLEQ 187 (562)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 24
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=28.41 E-value=1.3e+02 Score=19.88 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhc
Q 033340 21 VELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQAN 57 (121)
Q Consensus 21 e~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~ 57 (121)
++||.++..|.++|= .-|..|..-.-.+.+.+..
T Consensus 8 ~~lR~~ID~iD~~L~---~LL~~R~~~~~~v~~~K~~ 41 (109)
T 1ecm_A 8 LALREKISALDEKLL---ALLAERRELAVEVGKAKLL 41 (109)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 568888888888885 3477888877777777765
No 25
>1z6o_A Ferritin light chain; metal binding protein, iron storage; 1.91A {Trichoplusia NI} SCOP: a.25.1.1
Probab=28.40 E-value=60 Score=24.39 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=24.7
Q ss_pred ChhhHHHHH-HHHHHHHHHHHHHHHHHh
Q 033340 74 HEQSLADMQ-EVLQQQTEAIARLGNVLK 100 (121)
Q Consensus 74 D~~sl~emk-~~L~qQqeaia~L~~Vlk 100 (121)
|+.+.+=+. .||..|.+.+..+++.|.
T Consensus 156 D~~t~~fLe~~fleeQve~i~~l~~~l~ 183 (212)
T 1z6o_A 156 DPEIAQYLEEEFIEDHAEKIRTLAGHTS 183 (212)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888 999999999999999875
No 26
>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A
Probab=27.52 E-value=1.2e+02 Score=19.31 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhcc
Q 033340 21 VELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANS 58 (121)
Q Consensus 21 e~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~~ 58 (121)
++||.++..+.++|= .-|..|..-.-.+.+.+...
T Consensus 6 ~~lR~~ID~iD~~l~---~Ll~~R~~~~~~i~~~K~~~ 40 (90)
T 2d8d_A 6 QALRKEVDRVNREIL---RLLSERGRLVQEIGRLQTEL 40 (90)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHC
Confidence 567888888888874 34777777777777777653
No 27
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=26.63 E-value=6.5 Score=29.95 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhc
Q 033340 77 SLADMQEVLQQQTEAIAR-LGNVLKRDIRDMEIIMAED 113 (121)
Q Consensus 77 sl~emk~~L~qQqeaia~-L~~Vlk~D~rDl~iI~~~~ 113 (121)
+++|+.+.|+.+ |+.. =+.+|-||++.|++++--+
T Consensus 49 TQeEL~~~L~~~--Gi~viTQATvSRDIkELglvKv~~ 84 (180)
T 3v4g_A 49 SQGEIVEALKQE--GFENINQSKVSRMLTKFGAVRTRN 84 (180)
T ss_dssp SHHHHHHHHHHT--TCTTCCHHHHHHHHHHTTCEEEEC
T ss_pred CHHHHHHHHHHC--CCcccCHHHHHHHHHHcCCEEeeC
Confidence 477888888765 8888 8899999999999987543
No 28
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=31.91 E-value=14 Score=24.58 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=22.6
Q ss_pred HHHHHHHHHhccCchhhHHHHHHHHHH
Q 033340 25 EKLASITRQLKGSGAELSRRVQNLLTV 51 (121)
Q Consensus 25 ~rL~~i~~ql~gap~qfkgRl~eLls~ 51 (121)
..+..+..+|+-+|.|.+.|..+|++.
T Consensus 37 ~tfa~iA~~Lnks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 37 KTFAYLAAKLDKNPNQVSERFQQLMKL 63 (70)
Confidence 356777888888999999999999864
No 29
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=24.40 E-value=1.1e+02 Score=21.42 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=23.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033340 74 HEQSLADMQEVLQQQTEAIARLGNVLKR 101 (121)
Q Consensus 74 D~~sl~emk~~L~qQqeaia~L~~Vlk~ 101 (121)
|+.+..=+..||..|.+-+..|.+.|++
T Consensus 113 D~~~~~fl~~~l~eq~e~~~~l~~~l~~ 140 (165)
T 1eum_A 113 DYPTFNFLQWYVSEQHEEEKLFKSIIDK 140 (165)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999999999888888754
No 30
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=24.03 E-value=1.1e+02 Score=21.27 Aligned_cols=29 Identities=24% Similarity=0.431 Sum_probs=23.6
Q ss_pred HHHHHHHHh-ccCchhhHHHHHHHHHHHHh
Q 033340 26 KLASITRQL-KGSGAELSRRVQNLLTVSRV 54 (121)
Q Consensus 26 rL~~i~~ql-~gap~qfkgRl~eLls~~Rm 54 (121)
.+..+..+| |-+|.|.+.|.++|++..--
T Consensus 57 tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 57 TFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp THHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 466777888 56999999999999987644
No 31
>1pzr_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.38.2.1
Probab=23.01 E-value=1.5e+02 Score=18.62 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=25.3
Q ss_pred CchHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH
Q 033340 17 MKGEVELAEKLASITRQLKGSGAELSRRVQNLLTV 51 (121)
Q Consensus 17 ~~eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls~ 51 (121)
++.|+.|+..|....+.+. +.++|+.++-+.
T Consensus 27 m~~eeKLrdyLkrvtadL~----r~RrRLreleaa 57 (60)
T 1pzr_A 27 GMTEEKLRRYLKRTVTELD----SVTARLREVEHR 57 (60)
T ss_dssp SSHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH----HHHHHHHHHHhh
Confidence 4578899999999999887 678888887654
No 32
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=22.68 E-value=27 Score=23.13 Aligned_cols=14 Identities=43% Similarity=0.757 Sum_probs=11.5
Q ss_pred hhhhhhhccCCCCC
Q 033340 2 RIVEALESKGCRLP 15 (121)
Q Consensus 2 r~v~ale~~g~~~~ 15 (121)
||||.||..|+=-|
T Consensus 43 rlid~lE~~GiVgp 56 (73)
T 2ve8_A 43 RMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHHTTSBCC
T ss_pred HHHHHHHHCCcCCc
Confidence 89999999987544
No 33
>3e6s_A Ferritin; iron storage, ferroxidase, oxidoreductase; 1.95A {Pseudo-nitzschia multiseries} SCOP: a.25.1.1 PDB: 3e6r_A
Probab=22.55 E-value=1.2e+02 Score=21.69 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 033340 74 HEQSLADMQEVLQQQTEAIARLGNVLKR 101 (121)
Q Consensus 74 D~~sl~emk~~L~qQqeaia~L~~Vlk~ 101 (121)
|+.+.+=+..||..|-+-+..+.+.|.+
T Consensus 114 D~~t~~fLe~fl~eQve~~~~l~~~l~~ 141 (168)
T 3e6s_A 114 DFAVMAFLNPFHLQQVNEEDKIGSILAK 141 (168)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999887753
No 34
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=22.32 E-value=1.1e+02 Score=19.34 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=21.9
Q ss_pred HHHHhhhcccCCCCCccCCCccccChhhHHHHHHHHHHHH
Q 033340 50 TVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQQQT 89 (121)
Q Consensus 50 s~~Rmq~~~~~~~g~~~~~~~~klD~~sl~emk~~L~qQq 89 (121)
...|+|...+.... |+..+.=....+.|+.+|.+.+
T Consensus 26 f~LR~q~atgql~n----~~~ir~vRr~IARi~Tvl~er~ 61 (66)
T 1r73_A 26 MELRFQLAMGQLKN----TSLIKLTKRDIARIKTILRERE 61 (66)
T ss_dssp HHHHHHHHHTCCCC----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCccC----cHHHHHHHHHHHHHHHHHHHHH
Confidence 35688877644444 3555555566666777776654
No 35
>1rfm_A L-sulfolactate dehydrogenase; methanogens, coenzyme M, hyperthermostable, Pro-S hydrogen transfer; HET: NAD; 2.50A {Methanocaldococcus jannaschii} PDB: 2x06_A*
Probab=22.30 E-value=1.3e+02 Score=24.36 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=29.3
Q ss_pred chhhHHHHHHHHHHHHhhhcccCCCCCccCCCc------------cccChhhHHHHHHH
Q 033340 38 GAELSRRVQNLLTVSRVQANSIGAGGSICLPGS------------TKIHEQSLADMQEV 84 (121)
Q Consensus 38 p~qfkgRl~eLls~~Rmq~~~~~~~g~~~~~~~------------~klD~~sl~emk~~ 84 (121)
+..|+.|+..++..+|-....- ..+||+|+. ..||+...++|++.
T Consensus 275 ~~~f~~~~~~~~~~l~~~~~~~--~~~v~~PGe~e~~~~~~~~~GI~~~~~~~~~l~~l 331 (344)
T 1rfm_A 275 KEEFKRKVDELLDEIKNSEPAE--GFEILIPGEIEERNKMKRKDGFEIDKNLYNQLKEI 331 (344)
T ss_dssp HHHHHHHHHHHHHHHHTSCBCS--SCCCCCTTHHHHHHHHHGGGCEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCC--CCceeCCChHHHHHHHHHcCCcCcCHHHHHHHHHH
Confidence 4468889999988877643322 556888874 34566666665544
No 36
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.39 E-value=1.5e+02 Score=19.28 Aligned_cols=26 Identities=27% Similarity=0.409 Sum_probs=21.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 033340 75 EQSLADMQEVLQQQTEAIARLGNVLK 100 (121)
Q Consensus 75 ~~sl~emk~~L~qQqeaia~L~~Vlk 100 (121)
++.++++-.++..||.-|.+|..-++
T Consensus 27 E~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 27 EQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999988876654
No 37
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=20.21 E-value=27 Score=21.99 Aligned_cols=49 Identities=22% Similarity=0.164 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhcccCCCCCccCCCccccChhhHHHHHHHHH
Q 033340 19 GEVELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANSIGAGGSICLPGSTKIHEQSLADMQEVLQ 86 (121)
Q Consensus 19 eEe~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~~~~~~g~~~~~~~~klD~~sl~emk~~L~ 86 (121)
..++|..+|..+..++ ...|+|...+.... |...+.=....+-|+.+|.
T Consensus 10 s~~EL~~~l~elk~El---------------f~LR~q~atgql~n----~~~ir~vRr~IARi~Tvl~ 58 (63)
T 3r8s_Y 10 SVEELNTELLNLLREQ---------------FNLRMQAASGQLQQ----SHLLKQVRRDVARVKTLLN 58 (63)
T ss_dssp HHHHHHHHHHHHTHHH---------------HHHHHHHHTTCCSC----GGGTHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHH---------------HHHHHHHHhCCCcC----cHHHHHHHHHHHHHHHHHH
Confidence 3456666666655554 35788877654444 3454444445555555544
No 38
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.21 E-value=2.7e+02 Score=24.42 Aligned_cols=62 Identities=15% Similarity=0.287 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhcc-------------cCCCCCccCCCccccChhhHHHHHHHHHH
Q 033340 21 VELAEKLASITRQLKGSGAELSRRVQNLLTVSRVQANS-------------IGAGGSICLPGSTKIHEQSLADMQEVLQQ 87 (121)
Q Consensus 21 e~L~~rL~~i~~ql~gap~qfkgRl~eLls~~Rmq~~~-------------~~~~g~~~~~~~~klD~~sl~emk~~L~q 87 (121)
++|+.|..-|..-|+ .+| .+|..|-+.+|-|... .|-++- -=-..|.||..+-++++..|.|
T Consensus 114 ~eLe~ri~yIK~kVd---~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC-~r~~~y~VD~~~Ye~~QKqLeQ 188 (491)
T 1m1j_A 114 TELRRRIVTLKQRVA---TQV-NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSC-ARSFDYQVDKEGYDNIQKHLTQ 188 (491)
T ss_dssp HHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTB-SSCCCCCCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhhHHhhhcHHHHHHHHHHHHH
Confidence 478888888888886 566 6777776666654431 122110 0014699999998887766654
No 39
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.03 E-value=1.8e+02 Score=18.65 Aligned_cols=39 Identities=5% Similarity=0.033 Sum_probs=31.9
Q ss_pred CccccChhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 033340 69 GSTKIHEQSLADMQEVLQQQTEAIARLGNVLKRDIRDME 107 (121)
Q Consensus 69 ~~~klD~~sl~emk~~L~qQqeaia~L~~Vlk~D~rDl~ 107 (121)
+.+++|+..+...-.-+......|....+-|+..+..|.
T Consensus 7 ~~i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~ 45 (103)
T 4i0x_B 7 SEFSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLV 45 (103)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999999999999888888888888887776653
Done!