BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033342
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EMS|A Chain A, Crystal Structure Of The C. Elegans Nitfhit Protein
pdb|1EMS|B Chain B, Crystal Structure Of The C. Elegans Nitfhit Protein
Length = 440
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGP 68
+AV QMTS NDL NF +++ A +++ PE F ++G + I +A D
Sbjct: 17 IAVCQMTSDNDLEKNFQAAKNMIERAGEKKCEMVFLPECFDFIGLNKNEQIDLAMATDCE 76
Query: 69 IMQGYCSLARESSMWLSLGGFQEK-GSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
M+ Y LAR+ ++WLSLGG K SD A NTH+++D G R+ Y K+HL
Sbjct: 77 YMEKYRELARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHL 130
>pdb|1J31|A Chain A, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|B Chain B, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|C Chain C, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
pdb|1J31|D Chain D, Crystal Structure Of Hypothetical Protein Ph0642 From
Pyrococcus Horikoshii
Length = 262
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 7 VRVAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPENF--SYVGDKDADNIKIAE 63
V+V Q I +L N++ +L+KEA+ GAKL+ PE F Y + + +A+
Sbjct: 2 VKVGYIQXEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQ 61
Query: 64 PL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
+ +G LARE +++ G ++ G+ L N+ V++ G I YRKIHL
Sbjct: 62 QIPEGETTTFLXELARELGLYIVAGTAEKSGN---YLYNSAVVVGPRGYI-GKYRKIHL 116
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 6 SVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENF------SYVGDKDADNI 59
+ R+A+ Q+ + + N LV+EAA GA ++ PE F +Y D
Sbjct: 3 TFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPECFNSPYGTTYFPD------ 56
Query: 60 KIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKI 119
AE + G Q +A+ESS++L G E+ D +L NT + G++ +RKI
Sbjct: 57 -YAEKIPGESTQKLSEVAKESSIYLIGGSIPEE--DAGKLYNTCSVFGPDGSLLVKHRKI 113
Query: 120 HL 121
HL
Sbjct: 114 HL 115
>pdb|3IVZ|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IVZ|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3IW3|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KI8|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|A Chain A, Crystal Structure Of Hyperthermophilic Nitrilase
pdb|3KLC|B Chain B, Crystal Structure Of Hyperthermophilic Nitrilase
Length = 262
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 63/119 (52%), Gaps = 8/119 (6%)
Query: 7 VRVAVAQMT-SINDLAANFATCSRLVKEAASAGAKLLCFPENF--SYVGDKDADNIKIAE 63
V+VA QM I + N++ +L+KEA+ GA+L+ PE F Y + + +IA+
Sbjct: 2 VKVAYVQMNPQILEPDKNYSKAEKLIKEASKQGAQLVVLPELFDTGYNFETREEVFEIAQ 61
Query: 64 PL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121
+ +G +AR++ +++ + G EK D L N+ V++ G I YRKIHL
Sbjct: 62 KIPEGETTTFLMDVARDTGVYI-VAGTAEKDGD--VLYNSAVVVGPRGFI-GKYRKIHL 116
>pdb|1UF4|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF4|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase
pdb|1UF5|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF5|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Methionine
pdb|1UF7|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF7|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Valine
pdb|1UF8|A Chain A, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
pdb|1UF8|B Chain B, Crystal Structure Of C171aV236A MUTANT OF N-Carbamyl-D-
Amino Acid Amidohydrolase Complexed With N-Carbamyl-D-
Phenylalanine
Length = 303
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 9 VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
+AV Q I RL+ +AAS GA + FPE + + + + D
Sbjct: 6 LAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELD 65
Query: 58 NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
+ E + GP+++ A E + +LG + E G R NT +L+D +G I
Sbjct: 66 SFYETE-MPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 122
Query: 115 TYRKIHL 121
YRKIHL
Sbjct: 123 KYRKIHL 129
>pdb|1ERZ|A Chain A, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
pdb|1ERZ|B Chain B, Crystal Structure Of N-Carbamyl-D-Amino Acid
Amidohydrolase With A Novel Catalytic Framework Common
To Amidohydrolases
Length = 303
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 9 VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
+AV Q I RL+ +AAS GA + FPE + + + + D
Sbjct: 6 LAVGQQGPIARAETREQVVVRLLDMLTKAASRGANFIVFPELALTTFFPRWHFTDEAELD 65
Query: 58 NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
+ E + GP+++ A E + +LG + E G R NT +L+D +G I
Sbjct: 66 SFYETE-MPGPVVRPLFEKAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 122
Query: 115 TYRKIHL 121
YRKIHL
Sbjct: 123 KYRKIHL 129
>pdb|1FO6|A Chain A, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|B Chain B, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|C Chain C, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
pdb|1FO6|D Chain D, Crystal Structure Analysis Of N-Carbamoyl-D-Amino-Acid
Amidohydrolase
Length = 304
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 9 VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
+AV Q I RL+ AAS G + FPE + + + + D
Sbjct: 7 LAVGQQGPIARAETREQVVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELD 66
Query: 58 NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
+ E + GP+++ A E + +LG + E G R NT +L+D +G I
Sbjct: 67 SFYETE-MPGPVVRPLFETAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 123
Query: 115 TYRKIHL 121
YRKIHL
Sbjct: 124 KYRKIHL 130
>pdb|2GGL|A Chain A, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|B Chain B, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|C Chain C, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
pdb|2GGL|D Chain D, The Mutant A222c Of Agrobacterium Radiobacter
N-Carbamoyl-D-Amino Acid Amidohydrolase
Length = 304
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 9 VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
+AV Q I RL+ AAS G + FPE + + + + D
Sbjct: 7 LAVGQQGPIARAETREQVVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELD 66
Query: 58 NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
+ E + GP+++ A E + +LG + E G R NT +L+D +G I
Sbjct: 67 SFYETE-MPGPVVRPLFETAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 123
Query: 115 TYRKIHL 121
YRKIHL
Sbjct: 124 KYRKIHL 130
>pdb|2GGK|A Chain A, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|B Chain B, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|C Chain C, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
pdb|2GGK|D Chain D, The Mutant A302c Of Agrobacterium Radiobacter
N-Carbamoyl-D- Amino-Acid Amidohydrolase
Length = 304
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 17/127 (13%)
Query: 9 VAVAQMTSINDLAANFATCSRLV---KEAASAGAKLLCFPE--------NFSYVGDKDAD 57
+AV Q I RL+ AAS G + FPE + + + + D
Sbjct: 7 LAVGQQGPIARAETREQVVGRLLDMLTNAASRGVNFIVFPELALTTFFPRWHFTDEAELD 66
Query: 58 NIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ---EKGSDDARLCNTHVLLDDAGNIRS 114
+ E + GP+++ A E + +LG + E G R NT +L+D +G I
Sbjct: 67 SFYETE-MPGPVVRPLFETAAELGIGFNLGYAELVVEGGVK--RRFNTSILVDKSGKIVG 123
Query: 115 TYRKIHL 121
YRKIHL
Sbjct: 124 KYRKIHL 130
>pdb|1F89|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
pdb|1F89|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Nit3, A
Member Of Branch 10 Of The Nitrilase Superfamily
Length = 291
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 4 AHSVRVAVAQMT-SINDLAANFATCSRLVKEA--ASAGAKLLCFPENFS--YVGD---KD 55
+ ++VA+ Q++ S D AN + ++ A KL+ PE F+ Y D K
Sbjct: 8 SQKIKVALVQLSGSSPDKMANLQRAATFIERAMKEQPDTKLVVLPECFNSPYSTDQFRKY 67
Query: 56 ADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST 115
++ I EP +Q +LA + + L G E ++ NT ++ ++ G +
Sbjct: 68 SEVINPKEPSTS--VQFLSNLANKFKIILVGGTIPELDPKTDKIYNTSIIFNEDGKLIDK 125
Query: 116 YRKIHL 121
+RK+HL
Sbjct: 126 HRKVHL 131
>pdb|2UXY|A Chain A, Aliphatic Amidase
Length = 341
Score = 32.7 bits (73), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 38 GAKLLCFPE-NFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMW--LSLGGFQEKGS 94
G L+ FPE + + A+ ++ A + G + + R++++W SL G + +
Sbjct: 51 GMDLVVFPEYSLQGIMYDPAEMMETAVAIPGEETEIFSRACRKANVWGVFSLTGERHEEH 110
Query: 95 DDARLCNTHVLLDDAGNIRSTYRKI 119
NT VL+D+ G I YRKI
Sbjct: 111 PRKAPYNTLVLIDNNGEIVQKYRKI 135
>pdb|3N05|A Chain A, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
pdb|3N05|B Chain B, Crystal Structure Of Nh3-Dependent Nad+ Synthetase From
Streptomyces Avermitilis
Length = 590
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 7 VRVAVAQM-TSINDLAANFATCSRLVKEAASAGAKLLCFPE 46
+R+A+ Q+ +++ D+A N R + +A GA L+ FPE
Sbjct: 5 LRLALNQIDSTVGDIAGNAEAILRWTRHSAEQGAHLVAFPE 45
>pdb|1P6X|A Chain A, Crystal Structure Of Ehv4-Tk Complexed With Thy And So4
pdb|1P6X|B Chain B, Crystal Structure Of Ehv4-Tk Complexed With Thy And So4
pdb|1P72|A Chain A, Crystal Structure Of Ehv4-tk Complexed With Thy And Adp
pdb|1P72|B Chain B, Crystal Structure Of Ehv4-tk Complexed With Thy And Adp
pdb|1P73|A Chain A, Crystal Structure Of Ehv4-Tk Complexed With Tp4a
pdb|1P73|B Chain B, Crystal Structure Of Ehv4-Tk Complexed With Tp4a
pdb|1P73|C Chain C, Crystal Structure Of Ehv4-Tk Complexed With Tp4a
pdb|1P73|D Chain D, Crystal Structure Of Ehv4-Tk Complexed With Tp4a
pdb|1P75|A Chain A, Crystal Structure Of Ehv4-Tk Complexed With Tp5a
pdb|1P75|B Chain B, Crystal Structure Of Ehv4-Tk Complexed With Tp5a
pdb|1P75|C Chain C, Crystal Structure Of Ehv4-Tk Complexed With Tp5a
pdb|1P75|D Chain D, Crystal Structure Of Ehv4-Tk Complexed With Tp5a
Length = 334
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 3 GAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSY 50
G+H V + + + + +T R++ AAS G+ L FPE +Y
Sbjct: 1 GSHMVTIVRIYLDGVYGIGK--STTGRVMASAASGGSPTLYFPEPMAY 46
>pdb|3SDB|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Apo Form
pdb|3SEQ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEQ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Ampcpp And Naad+
pdb|3SEZ|A Chain A, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Atp And Naad+
pdb|3SEZ|B Chain B, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Atp And Naad+
pdb|3SEZ|C Chain C, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Atp And Naad+
pdb|3SEZ|D Chain D, Crystal Structure Of C176a Mutant Of Glutamine-Dependent
Nad+ Synthetase From M. Tuberculosis In Complex With
Atp And Naad+
pdb|3SZG|A Chain A, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|B Chain B, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|C Chain C, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
pdb|3SZG|D Chain D, Crystal Structure Of C176a Glutamine-Dependent Nad+
Synthetase From M. Tuberculosis Bound To AmpPPI AND
NAAD+
Length = 680
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 7 VRVAV-AQMTSINDLAANFATCSRLVKEAASAGAKLLCFPE 46
VRVA T+I D AAN A+ + + GA L FPE
Sbjct: 13 VRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPE 53
>pdb|3DLA|A Chain A, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|B Chain B, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|C Chain C, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3DLA|D Chain D, X-ray Crystal Structure Of Glutamine-dependent Nad+
Synthetase From Mycobacterium Tuberculosis Bound To
Naad+ And Don
pdb|3SYT|A Chain A, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|B Chain B, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|C Chain C, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
pdb|3SYT|D Chain D, Crystal Structure Of Glutamine-Dependent Nad+ Synthetase
From M. Tuberculosis Bound To AmpPPI, NAD+, AND
GLUTAMATE
Length = 680
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 7 VRVAV-AQMTSINDLAANFATCSRLVKEAASAGAKLLCFPE 46
VRVA T+I D AAN A+ + + GA L FPE
Sbjct: 13 VRVAACTHHTTIGDPAANAASVLDMARACHDDGAALAVFPE 53
>pdb|2K7J|A Chain A, Human Acylphosphatase(Acph) Surface Charge-Optimized
Length = 99
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 70 MQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLL 106
+QG S RE WL G E D A N V+L
Sbjct: 52 LQGPISKVREMQKWLETRGSPESHIDKANFKNEKVIL 88
>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|B Chain B, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|C Chain C, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
pdb|3KG2|D Chain D, Ampa Subtype Ionotropic Glutamate Receptor In Complex With
Competitive Antagonist Zk 200775
Length = 823
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 80 SSMWLSLGGFQEKGSD 95
+S+W SLG F ++G+D
Sbjct: 566 NSLWFSLGAFMQQGAD 581
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,421,481
Number of Sequences: 62578
Number of extensions: 124388
Number of successful extensions: 637
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 616
Number of HSP's gapped (non-prelim): 19
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)