Query 033342
Match_columns 121
No_of_seqs 145 out of 1178
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:44:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02798 nitrilase 100.0 4.9E-27 1.1E-31 162.5 14.0 117 5-121 9-125 (286)
2 PLN02747 N-carbamolyputrescine 99.9 5.7E-27 1.2E-31 162.8 13.7 117 1-121 1-122 (296)
3 cd07583 nitrilase_5 Uncharacte 99.9 1.2E-26 2.6E-31 157.9 13.7 111 8-121 1-112 (253)
4 TIGR03381 agmatine_aguB N-carb 99.9 2E-26 4.4E-31 158.6 14.0 111 7-121 1-116 (279)
5 cd07572 nit Nit1, Nit 2, and r 99.9 2.3E-26 5E-31 157.3 13.2 113 8-121 1-115 (265)
6 cd07568 ML_beta-AS_like mammal 99.9 4E-26 8.7E-31 157.9 13.9 114 5-121 2-128 (287)
7 cd07581 nitrilase_3 Uncharacte 99.9 8.3E-26 1.8E-30 153.9 13.1 110 9-121 1-112 (255)
8 cd07566 ScNTA1_like Saccharomy 99.9 8.1E-26 1.7E-30 157.0 13.2 111 8-121 1-122 (295)
9 PLN02504 nitrilase 99.9 1.5E-25 3.3E-30 158.5 14.5 114 4-121 22-155 (346)
10 cd07573 CPA N-carbamoylputresc 99.9 1.5E-25 3.4E-30 154.7 14.2 112 7-121 1-117 (284)
11 cd07564 nitrilases_CHs Nitrila 99.9 2E-25 4.4E-30 155.2 13.9 111 7-121 1-126 (297)
12 cd07576 R-amidase_like Pseudom 99.9 2.7E-25 6E-30 151.2 13.4 110 8-121 1-112 (254)
13 PF00795 CN_hydrolase: Carbon- 99.9 1.1E-25 2.5E-30 146.6 11.0 110 8-121 1-121 (186)
14 cd07579 nitrilase_1_R2 Second 99.9 3.4E-25 7.4E-30 152.9 13.5 107 8-121 1-107 (279)
15 cd07565 aliphatic_amidase alip 99.9 4.2E-25 9E-30 153.3 13.8 113 7-121 1-123 (291)
16 cd07584 nitrilase_6 Uncharacte 99.9 5E-25 1.1E-29 150.3 13.6 112 8-121 1-117 (258)
17 cd07587 ML_beta-AS mammalian-l 99.9 6E-25 1.3E-29 156.3 13.9 115 5-121 62-191 (363)
18 cd07569 DCase N-carbamyl-D-ami 99.9 4.7E-25 1E-29 153.7 13.1 114 5-121 2-129 (302)
19 PLN00202 beta-ureidopropionase 99.9 7.2E-25 1.5E-29 157.5 14.2 117 4-121 84-212 (405)
20 cd07578 nitrilase_1_R1 First n 99.9 1.6E-24 3.5E-29 148.0 13.8 112 7-121 1-116 (258)
21 PRK13287 amiF formamidase; Pro 99.9 2.4E-24 5.1E-29 151.8 14.3 115 4-121 11-135 (333)
22 cd07585 nitrilase_7 Uncharacte 99.9 2.2E-24 4.7E-29 147.4 13.1 109 8-121 1-111 (261)
23 PRK10438 C-N hydrolase family 99.9 2.3E-24 5.1E-29 147.1 12.8 108 5-121 2-110 (256)
24 cd07567 biotinidase_like bioti 99.9 2.9E-24 6.4E-29 149.3 12.7 113 8-121 2-150 (299)
25 cd07575 Xc-1258_like Xanthomon 99.9 3.9E-24 8.4E-29 145.7 13.1 108 7-121 1-109 (252)
26 cd07580 nitrilase_2 Uncharacte 99.9 6E-24 1.3E-28 145.8 13.1 109 8-121 1-114 (268)
27 cd07582 nitrilase_4 Uncharacte 99.9 9.3E-24 2E-28 146.7 13.7 113 8-121 2-130 (294)
28 cd07197 nitrilase Nitrilase su 99.9 8.4E-24 1.8E-28 143.4 13.0 109 9-121 1-113 (253)
29 PRK13286 amiE acylamide amidoh 99.9 1.3E-23 2.9E-28 148.4 13.2 116 5-121 11-137 (345)
30 COG0388 Predicted amidohydrola 99.9 1.8E-23 3.8E-28 143.9 13.3 111 6-121 2-116 (274)
31 cd07574 nitrilase_Rim1_like Un 99.9 6E-24 1.3E-28 146.5 10.6 111 7-121 1-122 (280)
32 cd07577 Ph0642_like Pyrococcus 99.9 2.4E-23 5.2E-28 142.2 12.0 106 8-121 1-111 (259)
33 cd07570 GAT_Gln-NAD-synth Glut 99.9 2.5E-23 5.5E-28 142.1 10.7 109 8-121 1-112 (261)
34 PRK02628 nadE NAD synthetase; 99.9 2.5E-23 5.5E-28 157.7 11.5 112 5-121 11-125 (679)
35 cd07571 ALP_N-acyl_transferase 99.9 3.2E-23 7E-28 142.5 10.7 104 7-121 1-111 (270)
36 cd07586 nitrilase_8 Uncharacte 99.9 5.7E-23 1.2E-27 140.9 11.3 108 8-121 1-110 (269)
37 PLN02339 NAD+ synthase (glutam 99.9 6.6E-23 1.4E-27 155.5 10.4 111 5-121 2-116 (700)
38 KOG0807 Carbon-nitrogen hydrol 99.9 4.5E-23 9.8E-28 136.2 8.3 118 4-121 13-131 (295)
39 PRK13981 NAD synthetase; Provi 99.9 2.1E-22 4.6E-27 149.7 10.8 109 7-121 1-112 (540)
40 TIGR00546 lnt apolipoprotein N 99.9 4.9E-21 1.1E-25 137.7 9.8 107 5-121 158-271 (391)
41 KOG0806 Carbon-nitrogen hydrol 99.8 4.5E-20 9.8E-25 126.1 7.7 116 4-121 11-133 (298)
42 PRK00302 lnt apolipoprotein N- 99.8 4.6E-19 9.9E-24 131.1 10.0 106 5-121 218-331 (505)
43 KOG0805 Carbon-nitrogen hydrol 99.8 3.5E-18 7.6E-23 113.7 10.8 113 4-120 15-147 (337)
44 PRK12291 apolipoprotein N-acyl 99.8 5E-18 1.1E-22 122.9 10.4 98 7-121 195-299 (418)
45 KOG0808 Carbon-nitrogen hydrol 99.6 8.3E-15 1.8E-19 98.6 11.0 117 5-121 72-201 (387)
46 COG0815 Lnt Apolipoprotein N-a 99.6 3.8E-15 8.3E-20 110.2 9.5 106 5-121 226-342 (518)
47 PRK13825 conjugal transfer pro 99.5 1.8E-13 4E-18 98.3 10.9 99 6-121 185-288 (388)
48 KOG2303 Predicted NAD synthase 98.9 3.4E-09 7.4E-14 77.3 4.7 113 4-121 2-117 (706)
49 cd07565 aliphatic_amidase alip 95.1 0.44 9.6E-06 33.4 9.3 72 30-115 161-232 (291)
50 KOG0807 Carbon-nitrogen hydrol 94.5 0.098 2.1E-06 35.8 4.6 73 35-119 183-255 (295)
51 cd07585 nitrilase_7 Uncharacte 93.9 0.7 1.5E-05 31.5 8.0 75 31-115 149-223 (261)
52 cd07586 nitrilase_8 Uncharacte 93.7 0.84 1.8E-05 31.3 8.2 77 33-116 154-230 (269)
53 cd07576 R-amidase_like Pseudom 93.7 1.3 2.9E-05 29.9 9.0 71 31-115 151-221 (254)
54 cd07572 nit Nit1, Nit 2, and r 93.4 0.56 1.2E-05 32.0 6.9 72 30-114 161-233 (265)
55 cd07584 nitrilase_6 Uncharacte 93.4 1.3 2.8E-05 30.1 8.7 71 30-115 154-225 (258)
56 PRK15018 1-acyl-sn-glycerol-3- 93.4 0.47 1E-05 32.5 6.4 57 19-86 120-176 (245)
57 cd07197 nitrilase Nitrilase su 93.0 1.2 2.5E-05 30.0 8.0 70 32-115 153-222 (253)
58 cd07567 biotinidase_like bioti 92.8 0.99 2.1E-05 31.9 7.5 71 30-116 188-260 (299)
59 cd07570 GAT_Gln-NAD-synth Glut 92.5 0.91 2E-05 30.9 6.9 72 32-115 156-227 (261)
60 TIGR03381 agmatine_aguB N-carb 92.5 2.3 5E-05 29.2 9.0 79 31-115 159-240 (279)
61 PRK13286 amiE acylamide amidoh 92.3 2.3 4.9E-05 30.8 8.9 72 30-115 174-245 (345)
62 PLN02798 nitrilase 92.0 1.7 3.6E-05 30.3 7.8 74 30-115 171-245 (286)
63 cd07580 nitrilase_2 Uncharacte 92.0 2.9 6.2E-05 28.7 9.3 75 32-115 154-229 (268)
64 cd07587 ML_beta-AS mammalian-l 91.7 1.6 3.5E-05 31.7 7.6 71 32-114 235-320 (363)
65 cd07583 nitrilase_5 Uncharacte 91.4 2 4.3E-05 29.1 7.5 72 30-115 151-222 (253)
66 cd07577 Ph0642_like Pyrococcus 91.3 2.9 6.3E-05 28.5 8.4 69 31-115 150-221 (259)
67 cd07573 CPA N-carbamoylputresc 90.9 3.9 8.3E-05 28.2 8.8 82 30-115 159-243 (284)
68 TIGR00530 AGP_acyltrn 1-acyl-s 90.9 1.5 3.2E-05 26.3 6.0 51 25-86 76-126 (130)
69 cd07568 ML_beta-AS_like mammal 90.7 4.1 8.9E-05 28.2 8.7 74 30-115 170-245 (287)
70 PRK13981 NAD synthetase; Provi 90.3 2.1 4.6E-05 32.7 7.5 74 30-115 153-226 (540)
71 PF01553 Acyltransferase: Acyl 90.3 1.2 2.6E-05 26.8 5.2 51 24-85 77-127 (132)
72 COG0388 Predicted amidohydrola 90.2 3.1 6.7E-05 28.7 7.7 68 35-115 163-231 (274)
73 PLN02747 N-carbamolyputrescine 89.0 6 0.00013 27.6 8.8 80 30-115 164-250 (296)
74 cd07990 LPLAT_LCLAT1-like Lyso 88.9 1.4 3E-05 28.8 5.0 27 23-49 87-115 (193)
75 cd07578 nitrilase_1_R1 First n 88.5 5.7 0.00012 27.0 8.0 69 30-114 154-222 (258)
76 PLN00202 beta-ureidopropionase 88.5 4.6 0.0001 29.9 7.9 71 32-114 256-341 (405)
77 PLN02504 nitrilase 88.1 5 0.00011 29.0 7.7 69 30-114 194-281 (346)
78 cd07581 nitrilase_3 Uncharacte 87.9 5.9 0.00013 26.8 7.8 70 30-115 155-224 (255)
79 KOG2792 Putative cytochrome C 87.8 1.7 3.7E-05 30.2 4.9 94 20-118 155-260 (280)
80 cd07582 nitrilase_4 Uncharacte 87.6 7.7 0.00017 27.1 8.7 73 30-115 181-257 (294)
81 PRK10438 C-N hydrolase family 86.7 6.1 0.00013 27.0 7.3 66 37-115 154-219 (256)
82 smart00563 PlsC Phosphate acyl 86.5 2.7 5.8E-05 24.4 4.9 52 22-85 60-111 (118)
83 cd07988 LPLAT_ABO13168-like Ly 85.9 3.1 6.7E-05 26.6 5.2 35 38-86 95-129 (163)
84 cd07986 LPLAT_ACT14924-like Ly 85.1 3.4 7.4E-05 27.4 5.3 59 23-87 84-142 (210)
85 TIGR00542 hxl6Piso_put hexulos 84.8 8.4 0.00018 26.6 7.3 63 20-86 89-151 (279)
86 PRK09856 fructoselysine 3-epim 84.3 7.9 0.00017 26.5 7.0 62 20-85 85-146 (275)
87 cd07579 nitrilase_1_R2 Second 84.0 10 0.00022 26.4 7.5 80 30-113 144-230 (279)
88 cd07564 nitrilases_CHs Nitrila 84.0 10 0.00022 26.6 7.5 75 30-114 165-253 (297)
89 PTZ00261 acyltransferase; Prov 83.8 5.3 0.00011 29.1 6.0 52 24-85 201-252 (355)
90 COG1941 FrhG Coenzyme F420-red 83.1 9.1 0.0002 26.4 6.5 79 5-91 2-88 (247)
91 PRK13287 amiF formamidase; Pro 80.2 19 0.00042 25.9 8.8 72 30-115 173-244 (333)
92 COG1120 FepC ABC-type cobalami 79.0 5.8 0.00013 27.6 4.7 54 25-88 143-196 (258)
93 PLN02901 1-acyl-sn-glycerol-3- 77.7 13 0.00028 24.8 6.0 53 23-87 108-160 (214)
94 cd07993 LPLAT_DHAPAT-like Lyso 77.5 17 0.00037 24.0 6.5 25 25-49 88-112 (205)
95 cd07569 DCase N-carbamyl-D-ami 76.0 24 0.00052 24.7 8.4 41 74-115 220-260 (302)
96 PF13342 Toprim_Crpt: C-termin 75.8 10 0.00022 20.3 4.4 42 71-116 19-60 (62)
97 COG1131 CcmA ABC-type multidru 75.4 6.3 0.00014 27.8 4.2 69 34-115 150-218 (293)
98 cd07985 LPLAT_GPAT Lysophospho 75.1 16 0.00035 25.1 5.9 60 22-83 99-158 (235)
99 cd06551 LPLAT Lysophospholipid 74.2 12 0.00027 23.8 5.1 51 31-91 93-144 (187)
100 cd03293 ABC_NrtD_SsuB_transpor 74.2 10 0.00022 25.1 4.8 47 68-116 169-216 (220)
101 cd01821 Rhamnogalacturan_acety 73.8 21 0.00046 23.0 7.1 63 19-85 88-150 (198)
102 COG1225 Bcp Peroxiredoxin [Pos 73.4 8.2 0.00018 24.8 4.0 54 66-119 71-139 (157)
103 KOG0806 Carbon-nitrogen hydrol 72.7 3.7 8.1E-05 29.1 2.5 27 95-121 123-149 (298)
104 PF01081 Aldolase: KDPG and KH 72.6 11 0.00023 25.2 4.5 39 30-90 72-110 (196)
105 PRK13209 L-xylulose 5-phosphat 71.4 30 0.00066 23.8 6.9 63 20-86 94-156 (283)
106 PRK13210 putative L-xylulose 5 71.2 30 0.00066 23.7 7.2 63 20-86 89-151 (284)
107 PF02630 SCO1-SenC: SCO1/SenC; 71.1 25 0.00054 22.7 8.3 47 70-117 124-172 (174)
108 cd02968 SCO SCO (an acronym fo 70.9 4.9 0.00011 24.4 2.5 17 101-117 125-141 (142)
109 COG1126 GlnQ ABC-type polar am 70.6 8.6 0.00019 26.3 3.7 72 31-116 147-218 (240)
110 cd07992 LPLAT_AAK14816-like Ly 70.2 7.9 0.00017 25.4 3.5 25 25-49 97-121 (203)
111 COG4586 ABC-type uncharacteriz 70.0 15 0.00033 26.2 4.9 76 26-114 162-237 (325)
112 PRK11629 lolD lipoprotein tran 69.6 14 0.00031 24.7 4.7 46 68-117 183-228 (233)
113 TIGR02314 ABC_MetN D-methionin 69.3 9.7 0.00021 27.5 4.1 65 36-113 156-220 (343)
114 cd00019 AP2Ec AP endonuclease 69.2 25 0.00054 24.2 6.0 62 20-86 80-141 (279)
115 PRK07324 transaminase; Validat 69.2 18 0.0004 26.1 5.5 42 36-87 151-192 (373)
116 COG1712 Predicted dinucleotide 68.4 28 0.00061 24.0 5.8 47 24-85 70-116 (255)
117 COG1929 Glycerate kinase [Carb 68.3 7.8 0.00017 28.3 3.3 44 37-91 283-328 (378)
118 PRK10342 glycerate kinase I; P 68.1 10 0.00023 27.9 4.0 43 37-90 283-327 (381)
119 cd03297 ABC_ModC_molybdenum_tr 67.9 12 0.00026 24.7 4.0 43 68-113 169-211 (214)
120 PLN02510 probable 1-acyl-sn-gl 67.6 12 0.00025 27.6 4.2 12 38-49 172-183 (374)
121 TIGR00045 glycerate kinase. Th 67.0 15 0.00033 27.0 4.7 43 37-90 282-326 (375)
122 cd07574 nitrilase_Rim1_like Un 66.5 39 0.00086 23.2 7.5 67 31-109 162-231 (280)
123 cd03298 ABC_ThiQ_thiamine_tran 66.4 15 0.00033 24.1 4.4 43 68-113 166-208 (211)
124 PRK09932 glycerate kinase II; 65.7 21 0.00046 26.3 5.2 44 36-90 282-327 (381)
125 PF10087 DUF2325: Uncharacteri 65.6 18 0.00038 20.9 4.0 23 65-87 59-81 (97)
126 cd07566 ScNTA1_like Saccharomy 65.4 24 0.00051 24.9 5.3 20 30-49 184-203 (295)
127 COG0800 Eda 2-keto-3-deoxy-6-p 65.4 15 0.00032 24.8 4.0 18 30-47 77-94 (211)
128 PF13788 DUF4180: Domain of un 65.3 17 0.00037 22.0 4.0 64 5-75 4-67 (113)
129 PRK08633 2-acyl-glycerophospho 65.3 24 0.00051 29.3 6.0 49 28-87 501-549 (1146)
130 cd03265 ABC_DrrA DrrA is the A 65.3 17 0.00036 24.1 4.4 44 68-114 169-212 (220)
131 PF14488 DUF4434: Domain of un 65.3 34 0.00074 22.0 6.3 61 28-89 23-86 (166)
132 PRK07534 methionine synthase I 65.2 45 0.00097 24.2 6.7 27 19-45 125-151 (336)
133 COG1135 AbcC ABC-type metal io 65.1 11 0.00024 27.2 3.5 71 31-114 152-222 (339)
134 TIGR01184 ntrCD nitrate transp 65.1 15 0.00032 24.6 4.1 65 36-113 130-194 (230)
135 KOG2848 1-acyl-sn-glycerol-3-p 65.0 15 0.00032 25.7 4.0 31 19-49 144-174 (276)
136 COG1121 ZnuC ABC-type Mn/Zn tr 64.5 16 0.00036 25.4 4.2 66 29-107 148-213 (254)
137 TIGR03537 DapC succinyldiamino 64.4 27 0.00059 24.9 5.6 42 36-87 134-175 (350)
138 PRK06015 keto-hydroxyglutarate 64.0 20 0.00044 24.0 4.5 39 30-90 68-106 (201)
139 cd04501 SGNH_hydrolase_like_4 64.0 31 0.00067 21.8 5.3 78 7-85 60-142 (183)
140 PRK13634 cbiO cobalt transport 63.9 14 0.0003 25.8 3.9 43 68-113 183-225 (290)
141 COG4175 ProV ABC-type proline/ 63.9 20 0.00044 26.1 4.7 69 33-114 177-245 (386)
142 PF08821 CGGC: CGGC domain; I 63.8 29 0.00063 20.7 5.8 54 25-88 52-106 (107)
143 TIGR01182 eda Entner-Doudoroff 63.8 21 0.00046 23.9 4.6 39 30-90 72-110 (204)
144 PRK13301 putative L-aspartate 63.0 40 0.00087 23.7 5.9 19 66-84 99-117 (267)
145 PLN02349 glycerol-3-phosphate 62.9 48 0.001 24.8 6.5 62 20-82 276-337 (426)
146 cd03256 ABC_PhnC_transporter A 62.7 18 0.00039 24.2 4.2 43 68-113 182-224 (241)
147 PTZ00056 glutathione peroxidas 62.3 43 0.00092 22.1 9.9 15 102-116 147-161 (199)
148 TIGR03864 PQQ_ABC_ATP ABC tran 62.1 39 0.00084 22.6 5.7 42 68-113 170-211 (236)
149 COG1066 Sms Predicted ATP-depe 61.8 35 0.00077 25.7 5.7 41 67-107 196-242 (456)
150 cd01832 SGNH_hydrolase_like_1 61.4 37 0.00079 21.5 5.4 63 20-85 87-149 (185)
151 PLN02380 1-acyl-sn-glycerol-3- 61.4 28 0.0006 25.7 5.2 12 38-49 164-175 (376)
152 cd03257 ABC_NikE_OppD_transpor 60.8 21 0.00046 23.6 4.3 43 68-113 183-225 (228)
153 PLN02607 1-aminocyclopropane-1 60.5 60 0.0013 24.3 6.9 55 22-86 182-238 (447)
154 cd07983 LPLAT_DUF374-like Lyso 60.2 32 0.00069 22.1 4.9 42 34-89 93-134 (189)
155 PF01261 AP_endonuc_2: Xylose 60.1 43 0.00093 21.4 6.0 62 21-86 67-130 (213)
156 PRK11701 phnK phosphonate C-P 59.8 21 0.00045 24.3 4.2 42 69-113 190-231 (258)
157 TIGR02315 ABC_phnC phosphonate 59.4 28 0.0006 23.4 4.7 43 68-113 183-225 (243)
158 TIGR02211 LolD_lipo_ex lipopro 59.3 26 0.00057 23.1 4.5 42 68-113 179-220 (221)
159 PRK10851 sulfate/thiosulfate t 59.2 19 0.00041 26.1 4.0 65 36-113 152-216 (353)
160 cd00950 DHDPS Dihydrodipicolin 58.7 34 0.00073 23.8 5.1 26 23-48 80-106 (284)
161 PRK10528 multifunctional acyl- 58.6 31 0.00068 22.3 4.7 69 8-85 73-146 (191)
162 PRK13640 cbiO cobalt transport 58.4 25 0.00055 24.4 4.4 42 68-113 181-222 (282)
163 TIGR00674 dapA dihydrodipicoli 58.3 37 0.00079 23.7 5.2 26 23-48 78-104 (285)
164 cd03259 ABC_Carb_Solutes_like 57.9 25 0.00055 23.1 4.2 43 68-113 168-210 (213)
165 cd03012 TlpA_like_DipZ_like Tl 57.9 38 0.00083 20.2 7.4 94 8-116 24-122 (126)
166 PRK13648 cbiO cobalt transport 57.8 44 0.00095 23.0 5.5 42 68-113 180-221 (269)
167 TIGR03855 NAD_NadX aspartate d 57.7 58 0.0013 22.2 6.3 48 26-88 49-96 (229)
168 cd00340 GSH_Peroxidase Glutath 57.6 13 0.00028 23.2 2.7 16 102-117 125-140 (152)
169 PRK14014 putative acyltransfer 57.6 17 0.00036 25.9 3.4 26 24-49 160-185 (301)
170 cd03261 ABC_Org_Solvent_Resist 57.4 28 0.0006 23.3 4.4 43 68-113 174-216 (235)
171 PRK15112 antimicrobial peptide 57.3 22 0.00047 24.5 3.9 43 68-113 187-229 (267)
172 cd03301 ABC_MalK_N The N-termi 57.2 24 0.00052 23.2 4.0 43 68-113 168-210 (213)
173 TIGR02323 CP_lyasePhnK phospho 57.2 25 0.00055 23.8 4.2 43 68-113 186-228 (253)
174 COG1603 RPP1 RNase P/RNase MRP 57.2 35 0.00077 23.4 4.7 20 30-49 89-109 (229)
175 PRK13650 cbiO cobalt transport 57.1 25 0.00055 24.4 4.2 42 68-113 178-219 (279)
176 PRK11650 ugpC glycerol-3-phosp 57.0 22 0.00047 25.9 4.0 64 37-113 151-214 (356)
177 smart00481 POLIIIAc DNA polyme 57.0 28 0.0006 18.3 5.8 46 26-88 16-61 (67)
178 PRK07114 keto-hydroxyglutarate 56.9 32 0.00069 23.4 4.5 18 72-89 103-120 (222)
179 PLN02376 1-aminocyclopropane-1 56.8 86 0.0019 23.9 7.4 54 23-86 182-237 (496)
180 cd03216 ABC_Carb_Monos_I This 56.7 22 0.00047 22.5 3.6 69 31-113 93-161 (163)
181 COG1119 ModF ABC-type molybden 56.7 66 0.0014 22.5 6.0 74 30-117 181-256 (257)
182 PRK10253 iron-enterobactin tra 56.6 25 0.00053 24.2 4.1 65 36-113 159-223 (265)
183 cd03296 ABC_CysA_sulfate_impor 56.6 27 0.00058 23.5 4.2 43 68-113 174-216 (239)
184 cd07987 LPLAT_MGAT-like Lysoph 56.3 15 0.00032 24.3 2.9 51 32-86 83-133 (212)
185 PRK11756 exonuclease III; Prov 56.3 33 0.00072 23.5 4.7 24 23-49 14-37 (268)
186 PRK13633 cobalt transporter AT 56.1 40 0.00087 23.4 5.1 42 68-113 182-223 (280)
187 TIGR03005 ectoine_ehuA ectoine 56.1 28 0.00062 23.6 4.3 43 68-113 184-226 (252)
188 PRK11153 metN DL-methionine tr 56.1 23 0.00051 25.5 4.0 43 68-113 178-220 (343)
189 TIGR02769 nickel_nikE nickel i 55.9 27 0.00059 23.9 4.2 43 68-113 188-230 (265)
190 PF02595 Gly_kinase: Glycerate 55.8 8.4 0.00018 28.3 1.8 43 37-90 283-327 (377)
191 PRK09997 hydroxypyruvate isome 55.8 63 0.0014 22.0 7.3 63 20-86 80-142 (258)
192 PRK10418 nikD nickel transport 55.7 24 0.00053 24.0 3.9 43 68-113 178-220 (254)
193 PRK13652 cbiO cobalt transport 55.5 29 0.00064 24.0 4.4 43 68-113 175-217 (277)
194 TIGR02770 nickel_nikD nickel i 55.4 27 0.00058 23.3 4.1 43 68-113 163-205 (230)
195 PRK08960 hypothetical protein; 55.4 47 0.001 24.0 5.6 42 36-87 163-204 (387)
196 PRK11300 livG leucine/isoleuci 55.2 26 0.00056 23.8 4.0 64 37-113 170-233 (255)
197 PRK06552 keto-hydroxyglutarate 54.8 38 0.00083 22.8 4.7 16 30-45 80-95 (213)
198 PF09587 PGA_cap: Bacterial ca 54.6 66 0.0014 21.9 7.3 77 24-112 170-246 (250)
199 cd03258 ABC_MetN_methionine_tr 54.6 33 0.00071 22.9 4.4 44 68-114 178-221 (233)
200 TIGR03538 DapC_gpp succinyldia 54.6 50 0.0011 23.9 5.6 41 37-87 164-204 (393)
201 PRK09473 oppD oligopeptide tra 54.6 27 0.00058 25.1 4.1 44 68-114 199-242 (330)
202 PRK15447 putative protease; Pr 54.3 53 0.0012 23.3 5.5 36 7-49 3-39 (301)
203 cd03295 ABC_OpuCA_Osmoprotecti 54.2 33 0.00072 23.1 4.4 43 68-113 173-215 (242)
204 cd03214 ABC_Iron-Siderophores_ 54.1 32 0.0007 22.0 4.2 68 33-113 110-177 (180)
205 PRK10584 putative ABC transpor 54.1 31 0.00068 22.9 4.2 42 68-113 184-225 (228)
206 PRK10419 nikE nickel transport 54.0 26 0.00056 24.1 3.9 43 68-113 189-231 (268)
207 cd07991 LPLAT_LPCAT1-like Lyso 54.0 21 0.00046 23.6 3.3 23 27-49 84-108 (211)
208 TIGR03415 ABC_choXWV_ATP choli 53.8 25 0.00055 25.9 4.0 65 36-113 180-244 (382)
209 PF04167 DUF402: Protein of un 53.7 14 0.0003 20.1 2.0 21 97-117 14-34 (72)
210 PRK12677 xylose isomerase; Pro 53.5 89 0.0019 23.1 6.7 26 21-46 110-136 (384)
211 PRK09147 succinyldiaminopimela 53.4 56 0.0012 23.7 5.7 40 37-86 165-204 (396)
212 PRK06348 aspartate aminotransf 53.4 55 0.0012 23.7 5.6 41 36-86 160-200 (384)
213 TIGR01277 thiQ thiamine ABC tr 53.3 39 0.00083 22.3 4.5 43 68-113 166-208 (213)
214 TIGR01187 potA spermidine/putr 53.2 28 0.0006 24.9 4.0 43 68-113 138-180 (325)
215 PTZ00253 tryparedoxin peroxida 53.2 41 0.00089 22.1 4.6 19 97-115 124-142 (199)
216 PRK13642 cbiO cobalt transport 53.2 38 0.00081 23.5 4.6 42 68-113 178-219 (277)
217 PRK10575 iron-hydroxamate tran 53.1 33 0.00071 23.5 4.3 43 68-113 185-227 (265)
218 cd03255 ABC_MJ0796_Lo1CDE_FtsE 53.1 36 0.00077 22.4 4.3 40 68-111 178-217 (218)
219 TIGR03265 PhnT2 putative 2-ami 53.0 28 0.0006 25.3 4.0 65 37-114 151-215 (353)
220 CHL00200 trpA tryptophan synth 53.0 59 0.0013 22.7 5.5 18 68-85 131-148 (263)
221 PTZ00376 aspartate aminotransf 52.6 50 0.0011 24.1 5.3 51 24-85 163-213 (404)
222 PRK11432 fbpC ferric transport 52.5 29 0.00063 25.2 4.0 44 68-114 174-217 (351)
223 cd03267 ABC_NatA_like Similar 52.5 28 0.00061 23.4 3.8 43 68-113 191-233 (236)
224 cd01822 Lysophospholipase_L1_l 52.3 56 0.0012 20.4 5.9 58 19-85 82-139 (177)
225 cd08362 BphC5-RrK37_N_like N-t 52.3 44 0.00096 19.2 5.8 46 68-116 70-115 (120)
226 PRK13911 exodeoxyribonuclease 52.2 35 0.00076 23.5 4.3 38 7-49 1-38 (250)
227 KOG1505 Lysophosphatidic acid 52.2 23 0.0005 25.8 3.5 26 23-49 137-162 (346)
228 PRK11144 modC molybdate transp 52.2 32 0.00069 24.9 4.2 43 68-113 166-208 (352)
229 TIGR02540 gpx7 putative glutat 52.0 17 0.00037 22.6 2.6 29 18-46 35-63 (153)
230 PRK15093 antimicrobial peptide 51.9 30 0.00065 24.8 4.0 44 67-113 195-238 (330)
231 COG0708 XthA Exonuclease III [ 51.8 38 0.00082 23.7 4.3 37 7-49 1-37 (261)
232 COG0204 PlsC 1-acyl-sn-glycero 51.7 22 0.00048 23.7 3.2 51 25-85 125-175 (255)
233 PRK08056 threonine-phosphate d 51.6 57 0.0012 23.3 5.4 42 36-87 140-181 (356)
234 PRK13636 cbiO cobalt transport 51.6 32 0.00069 23.9 4.1 43 68-113 179-221 (283)
235 cd00952 CHBPH_aldolase Trans-o 51.4 61 0.0013 23.0 5.5 26 23-48 88-114 (309)
236 TIGR02142 modC_ABC molybdenum 51.3 33 0.00072 24.8 4.2 43 68-113 169-211 (354)
237 COG3638 ABC-type phosphate/pho 51.1 23 0.00049 24.7 3.1 69 32-113 159-227 (258)
238 PRK13632 cbiO cobalt transport 51.0 63 0.0014 22.3 5.4 42 68-113 180-221 (271)
239 PLN02833 glycerol acyltransfer 51.0 40 0.00087 24.9 4.6 25 25-49 222-248 (376)
240 TIGR02982 heterocyst_DevA ABC 50.9 35 0.00077 22.6 4.1 41 68-112 179-219 (220)
241 PF10042 DUF2278: Uncharacteri 50.7 29 0.00063 23.4 3.5 38 18-56 115-152 (206)
242 PRK13635 cbiO cobalt transport 50.7 38 0.00082 23.5 4.3 42 68-113 178-219 (279)
243 PRK10247 putative ABC transpor 50.4 40 0.00087 22.4 4.3 40 68-110 175-214 (225)
244 PRK11000 maltose/maltodextrin 50.3 31 0.00066 25.2 3.9 44 68-114 171-214 (369)
245 cd07254 Glo_EDI_BRP_like_20 Th 50.1 49 0.0011 19.1 5.8 47 69-118 71-117 (120)
246 PRK05957 aspartate aminotransf 50.0 60 0.0013 23.5 5.4 20 67-86 179-198 (389)
247 PRK11248 tauB taurine transpor 49.9 41 0.0009 23.0 4.3 44 68-113 166-210 (255)
248 PRK11831 putative ABC transpor 49.9 38 0.00082 23.3 4.2 43 68-113 181-223 (269)
249 PRK03170 dihydrodipicolinate s 49.9 64 0.0014 22.6 5.3 27 22-48 80-107 (292)
250 PRK13304 L-aspartate dehydroge 49.8 77 0.0017 21.9 5.7 23 66-88 98-120 (265)
251 PRK11247 ssuB aliphatic sulfon 49.8 37 0.00081 23.3 4.1 44 68-114 171-214 (257)
252 PF00701 DHDPS: Dihydrodipicol 49.7 66 0.0014 22.4 5.4 50 23-85 81-131 (289)
253 PLN00175 aminotransferase fami 49.7 66 0.0014 23.7 5.6 41 36-86 185-225 (413)
254 cd00954 NAL N-Acetylneuraminic 49.5 70 0.0015 22.4 5.5 50 23-85 81-132 (288)
255 PRK09452 potA putrescine/sperm 49.4 33 0.00072 25.2 4.0 44 68-114 182-225 (375)
256 PF00155 Aminotran_1_2: Aminot 49.3 34 0.00074 24.2 4.0 54 23-86 131-186 (363)
257 PRK11022 dppD dipeptide transp 49.2 35 0.00076 24.4 4.0 45 67-114 190-234 (326)
258 PRK13637 cbiO cobalt transport 49.1 37 0.00079 23.7 4.0 43 68-113 182-224 (287)
259 PRK11308 dppF dipeptide transp 49.0 35 0.00075 24.5 4.0 43 68-113 192-234 (327)
260 cd03223 ABCD_peroxisomal_ALDP 49.0 67 0.0014 20.3 6.7 63 32-111 103-165 (166)
261 PF00266 Aminotran_5: Aminotra 48.9 66 0.0014 23.0 5.5 38 36-86 137-174 (371)
262 PRK14250 phosphate ABC transpo 48.8 47 0.001 22.4 4.5 43 68-113 169-211 (241)
263 PRK10771 thiQ thiamine transpo 48.8 38 0.00082 22.6 4.0 43 68-113 167-209 (232)
264 PRK14258 phosphate ABC transpo 48.6 43 0.00093 22.9 4.3 43 68-113 188-235 (261)
265 cd07940 DRE_TIM_IPMS 2-isoprop 48.6 83 0.0018 21.7 5.7 32 18-49 107-138 (268)
266 cd03300 ABC_PotA_N PotA is an 48.5 38 0.00082 22.6 4.0 42 68-112 168-209 (232)
267 PRK08043 bifunctional acyl-[ac 48.4 44 0.00096 26.4 4.8 43 33-86 92-134 (718)
268 PRK05764 aspartate aminotransf 48.2 64 0.0014 23.3 5.3 20 68-87 184-203 (393)
269 TIGR00968 3a0106s01 sulfate AB 48.0 43 0.00093 22.5 4.2 43 68-113 168-210 (237)
270 TIGR00262 trpA tryptophan synt 48.0 88 0.0019 21.7 5.7 14 70-83 129-142 (256)
271 COG0119 LeuA Isopropylmalate/h 47.8 1.1E+02 0.0024 22.9 6.5 32 18-49 110-141 (409)
272 PRK06108 aspartate aminotransf 47.6 64 0.0014 23.1 5.2 20 67-86 177-196 (382)
273 PRK12414 putative aminotransfe 47.6 65 0.0014 23.3 5.3 40 37-86 161-200 (384)
274 cd03294 ABC_Pro_Gly_Bertaine T 47.5 44 0.00096 23.0 4.2 43 68-113 198-240 (269)
275 PF13472 Lipase_GDSL_2: GDSL-l 47.5 64 0.0014 19.6 4.9 78 6-85 61-147 (179)
276 cd07945 DRE_TIM_CMS Leptospira 47.3 79 0.0017 22.2 5.4 32 18-49 108-139 (280)
277 PRK09984 phosphonate/organopho 47.2 46 0.00099 22.7 4.3 43 68-113 190-232 (262)
278 PRK15079 oligopeptide ABC tran 47.1 40 0.00087 24.2 4.1 43 68-113 199-241 (331)
279 PRK13646 cbiO cobalt transport 46.9 40 0.00087 23.5 4.0 43 68-113 183-225 (286)
280 PRK13647 cbiO cobalt transport 46.8 36 0.00078 23.5 3.7 64 36-113 154-217 (274)
281 TIGR00633 xth exodeoxyribonucl 46.8 40 0.00087 22.6 3.9 19 31-49 20-38 (255)
282 PRK10908 cell division protein 46.6 35 0.00076 22.6 3.5 42 69-114 176-217 (222)
283 PRK11614 livF leucine/isoleuci 46.3 41 0.00089 22.5 3.9 42 68-113 175-216 (237)
284 PRK13645 cbiO cobalt transport 46.2 45 0.00097 23.2 4.1 42 69-113 189-230 (289)
285 cd05562 Peptidases_S53_like Pe 46.0 1E+02 0.0022 21.5 6.9 55 24-88 76-130 (275)
286 PRK15134 microcin C ABC transp 46.0 41 0.00088 25.7 4.1 44 68-114 463-506 (529)
287 TIGR03269 met_CoM_red_A2 methy 45.8 54 0.0012 25.0 4.8 43 68-113 206-248 (520)
288 TIGR01825 gly_Cac_T_rel pyrido 45.7 87 0.0019 22.4 5.7 48 26-86 151-198 (385)
289 cd06453 SufS_like Cysteine des 45.7 87 0.0019 22.3 5.6 38 37-87 138-175 (373)
290 PRK14072 6-phosphofructokinase 45.6 50 0.0011 24.7 4.4 13 37-49 208-220 (416)
291 PF00586 AIRS: AIR synthase re 45.6 30 0.00064 19.7 2.7 21 68-88 75-95 (96)
292 COG0093 RplN Ribosomal protein 45.4 17 0.00036 22.2 1.6 15 101-115 82-96 (122)
293 cd03260 ABC_PstB_phosphate_tra 45.2 49 0.0011 22.0 4.1 16 98-114 205-220 (227)
294 PRK12721 secretion system appa 45.1 1.2E+02 0.0026 22.2 6.4 51 37-87 254-308 (349)
295 PLN02397 aspartate transaminas 44.9 1.2E+02 0.0026 22.4 6.4 39 37-85 193-231 (423)
296 TIGR03258 PhnT 2-aminoethylpho 44.8 45 0.00097 24.4 4.0 65 36-113 153-218 (362)
297 CHL00057 rpl14 ribosomal prote 44.6 25 0.00053 21.6 2.3 16 101-116 82-97 (122)
298 cd03266 ABC_NatA_sodium_export 44.0 48 0.001 21.8 3.9 64 36-113 152-215 (218)
299 PRK09536 btuD corrinoid ABC tr 44.0 40 0.00086 25.1 3.7 64 36-113 155-218 (402)
300 cd00763 Bacterial_PFK Phosphof 43.7 60 0.0013 23.4 4.4 14 36-49 182-195 (317)
301 cd03226 ABC_cobalt_CbiO_domain 43.6 34 0.00073 22.3 3.1 40 69-112 165-204 (205)
302 COG1123 ATPase components of v 43.5 59 0.0013 25.3 4.6 45 34-88 168-212 (539)
303 PLN02721 threonine aldolase 43.5 1.1E+02 0.0025 21.4 6.1 20 67-86 157-176 (353)
304 COG4598 HisP ABC-type histidin 43.5 67 0.0014 21.7 4.3 47 31-87 163-209 (256)
305 PLN02231 alanine transaminase 43.5 1.1E+02 0.0024 23.6 6.1 55 23-87 254-310 (534)
306 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 43.4 45 0.00097 22.2 3.7 64 36-113 158-221 (224)
307 PRK06836 aspartate aminotransf 43.3 86 0.0019 22.8 5.4 41 36-86 166-212 (394)
308 PF14419 SPOUT_MTase_2: AF2226 43.1 76 0.0017 20.6 4.3 42 8-49 1-43 (173)
309 PRK06724 hypothetical protein; 43.0 75 0.0016 19.2 5.8 47 66-114 73-119 (128)
310 PLN02855 Bifunctional selenocy 43.0 93 0.002 22.9 5.5 16 70-85 192-207 (424)
311 PLN02412 probable glutathione 43.0 28 0.0006 22.2 2.5 16 102-117 133-148 (167)
312 TIGR02482 PFKA_ATP 6-phosphofr 42.9 65 0.0014 23.0 4.5 14 36-49 182-195 (301)
313 PRK06855 aminotransferase; Val 42.9 1.1E+02 0.0023 22.8 5.9 38 38-85 171-208 (433)
314 cd02971 PRX_family Peroxiredox 42.8 48 0.001 19.8 3.5 20 98-117 108-127 (140)
315 TIGR03673 rpl14p_arch 50S ribo 42.8 27 0.00058 21.8 2.3 16 101-116 92-107 (131)
316 PRK09437 bcp thioredoxin-depen 42.7 28 0.00061 21.5 2.5 17 101-117 121-137 (154)
317 PTZ00433 tyrosine aminotransfe 42.3 1E+02 0.0022 22.6 5.6 42 36-87 175-216 (412)
318 PF02844 GARS_N: Phosphoribosy 42.3 18 0.00038 21.4 1.4 27 23-49 47-74 (100)
319 COG0047 PurL Phosphoribosylfor 42.3 1.1E+02 0.0024 21.0 6.0 73 6-84 2-84 (231)
320 PF12791 RsgI_N: Anti-sigma fa 42.2 35 0.00075 17.4 2.4 18 101-118 6-23 (56)
321 cd07261 Glo_EDI_BRP_like_11 Th 42.2 66 0.0014 18.3 5.8 43 68-116 71-113 (114)
322 KOG0257 Kynurenine aminotransf 42.2 86 0.0019 23.6 5.1 25 65-89 189-213 (420)
323 cd00408 DHDPS-like Dihydrodipi 42.1 82 0.0018 21.7 4.9 26 23-48 77-103 (281)
324 PRK00915 2-isopropylmalate syn 42.1 1.5E+02 0.0033 22.8 6.6 32 18-49 113-144 (513)
325 PRK07683 aminotransferase A; V 42.0 90 0.0019 22.6 5.3 21 67-87 180-200 (387)
326 PRK11264 putative amino-acid A 42.0 64 0.0014 21.7 4.3 41 69-113 183-223 (250)
327 TIGR03410 urea_trans_UrtE urea 42.0 60 0.0013 21.6 4.1 43 68-113 169-211 (230)
328 TIGR03269 met_CoM_red_A2 methy 41.9 52 0.0011 25.0 4.2 44 68-114 465-508 (520)
329 cd01834 SGNH_hydrolase_like_2 41.9 87 0.0019 19.6 5.2 66 20-85 84-151 (191)
330 PRK07568 aspartate aminotransf 41.9 89 0.0019 22.6 5.3 19 68-86 182-200 (397)
331 PRK08912 hypothetical protein; 41.8 1E+02 0.0022 22.3 5.5 21 66-86 177-197 (387)
332 PRK11607 potG putrescine trans 41.8 55 0.0012 24.0 4.1 42 69-113 188-229 (377)
333 PRK08571 rpl14p 50S ribosomal 41.7 28 0.00062 21.7 2.3 16 101-116 93-108 (132)
334 KOG1233 Alkyl-dihydroxyacetone 41.6 40 0.00086 25.3 3.3 28 39-85 161-188 (613)
335 PRK15481 transcriptional regul 41.4 1.2E+02 0.0026 22.3 6.0 44 32-85 205-250 (431)
336 KOG3406 40S ribosomal protein 41.4 87 0.0019 19.5 5.1 34 36-85 48-81 (134)
337 PRK06830 diphosphate--fructose 41.4 95 0.0021 23.6 5.3 12 38-49 272-283 (443)
338 PRK05483 rplN 50S ribosomal pr 41.2 29 0.00063 21.3 2.3 16 101-116 82-97 (122)
339 PRK08068 transaminase; Reviewe 41.0 98 0.0021 22.4 5.4 40 37-86 166-205 (389)
340 TIGR01979 sufS cysteine desulf 41.0 1.1E+02 0.0023 22.2 5.5 17 70-86 178-194 (403)
341 cd03230 ABC_DR_subfamily_A Thi 40.9 46 0.001 21.1 3.3 67 31-111 106-172 (173)
342 PTZ00256 glutathione peroxidas 40.8 33 0.00072 22.2 2.7 28 18-45 54-81 (183)
343 cd03219 ABC_Mj1267_LivG_branch 40.7 62 0.0014 21.5 4.1 42 68-113 181-222 (236)
344 PRK02628 nadE NAD synthetase; 40.7 1.9E+02 0.0041 23.2 7.6 71 33-115 190-261 (679)
345 TIGR01067 rplN_bact ribosomal 40.6 31 0.00067 21.2 2.3 15 101-115 82-96 (122)
346 TIGR02483 PFK_mixed phosphofru 40.5 68 0.0015 23.1 4.3 13 36-48 184-196 (324)
347 PRK15134 microcin C ABC transp 40.5 61 0.0013 24.8 4.3 43 68-113 194-236 (529)
348 cd03218 ABC_YhbG The ABC trans 40.4 72 0.0016 21.2 4.3 42 68-113 171-212 (232)
349 cd03224 ABC_TM1139_LivF_branch 40.3 80 0.0017 20.8 4.5 42 68-113 170-211 (222)
350 PRK03202 6-phosphofructokinase 40.3 80 0.0017 22.8 4.6 15 35-49 182-196 (320)
351 PF00202 Aminotran_3: Aminotra 40.2 1.4E+02 0.003 21.4 6.0 22 65-86 195-216 (339)
352 PTZ00377 alanine aminotransfer 40.1 1.6E+02 0.0035 22.2 7.0 54 23-86 201-256 (481)
353 TIGR01186 proV glycine betaine 40.1 58 0.0013 23.8 4.0 44 68-114 167-210 (363)
354 TIGR03540 DapC_direct LL-diami 40.0 93 0.002 22.4 5.1 40 37-86 163-202 (383)
355 PRK08392 hypothetical protein; 40.0 86 0.0019 20.9 4.6 52 26-87 15-66 (215)
356 PRK13536 nodulation factor exp 39.9 57 0.0012 23.6 3.9 64 36-113 188-251 (340)
357 cd07266 HPCD_N_class_II N-term 39.9 75 0.0016 18.3 4.7 45 68-116 72-116 (121)
358 PRK11858 aksA trans-homoaconit 39.8 1.5E+02 0.0033 21.8 6.6 32 18-49 109-140 (378)
359 cd03217 ABC_FeS_Assembly ABC-t 39.8 71 0.0015 20.8 4.1 67 33-113 117-184 (200)
360 PRK08363 alanine aminotransfer 39.8 87 0.0019 22.7 4.9 40 37-86 165-204 (398)
361 PLN00125 Succinyl-CoA ligase [ 39.8 1.4E+02 0.003 21.4 6.2 47 25-87 80-127 (300)
362 cd07491 Peptidases_S8_7 Peptid 39.7 1.2E+02 0.0026 20.7 6.2 26 23-48 87-112 (247)
363 TIGR00640 acid_CoA_mut_C methy 39.7 91 0.002 19.2 5.0 20 27-46 42-61 (132)
364 TIGR03234 OH-pyruv-isom hydrox 39.6 1.2E+02 0.0026 20.5 7.0 60 23-86 82-141 (254)
365 PTZ00054 60S ribosomal protein 39.6 34 0.00073 21.6 2.4 16 101-116 100-115 (139)
366 PRK06555 pyrophosphate--fructo 39.4 42 0.00091 25.1 3.2 13 37-49 230-242 (403)
367 PRK03892 ribonuclease P protei 39.4 94 0.002 21.1 4.5 17 32-48 96-112 (216)
368 TIGR01264 tyr_amTase_E tyrosin 39.3 1.4E+02 0.003 21.8 5.9 41 36-86 166-206 (401)
369 PRK10619 histidine/lysine/argi 39.3 66 0.0014 21.9 4.0 41 69-113 191-231 (257)
370 PRK09082 methionine aminotrans 39.3 1.1E+02 0.0023 22.2 5.3 19 68-86 183-201 (386)
371 PRK10522 multidrug transporter 39.3 75 0.0016 24.4 4.7 17 98-115 514-530 (547)
372 PRK07777 aminotransferase; Val 39.3 1.1E+02 0.0023 22.2 5.3 19 68-86 179-197 (387)
373 PRK09493 glnQ glutamine ABC tr 39.2 64 0.0014 21.6 3.9 41 69-113 175-215 (240)
374 PRK10874 cysteine sulfinate de 39.2 1.1E+02 0.0024 22.2 5.4 17 70-86 179-195 (401)
375 PLN02399 phospholipid hydroper 39.2 34 0.00074 23.5 2.6 28 18-45 112-139 (236)
376 smart00642 Aamy Alpha-amylase 39.2 1E+02 0.0022 19.7 6.9 68 23-90 17-92 (166)
377 KOG4175 Tryptophan synthase al 39.0 73 0.0016 21.7 4.0 64 23-86 78-153 (268)
378 PRK10070 glycine betaine trans 39.0 55 0.0012 24.3 3.8 43 68-113 202-244 (400)
379 cd03268 ABC_BcrA_bacitracin_re 39.0 71 0.0015 20.8 4.1 41 69-113 165-205 (208)
380 TIGR02403 trehalose_treC alpha 39.0 1.8E+02 0.004 22.5 6.8 70 21-90 23-97 (543)
381 PRK11231 fecE iron-dicitrate t 38.8 79 0.0017 21.4 4.4 41 69-113 177-217 (255)
382 PF10566 Glyco_hydro_97: Glyco 38.5 1.4E+02 0.0031 21.1 6.6 62 22-85 29-90 (273)
383 cd03215 ABC_Carb_Monos_II This 38.5 56 0.0012 20.9 3.4 67 31-111 115-181 (182)
384 COG0309 HypE Hydrogenase matur 38.5 1.5E+02 0.0033 21.7 5.7 25 67-91 108-132 (339)
385 PRK06814 acylglycerophosphoeth 38.4 90 0.002 26.1 5.3 42 33-85 518-559 (1140)
386 PLN02884 6-phosphofructokinase 38.3 92 0.002 23.4 4.8 14 36-49 240-254 (411)
387 TIGR03645 glyox_marine lactoyl 38.2 1E+02 0.0022 19.3 5.6 48 70-118 104-151 (162)
388 PTZ00320 ribosomal protein L14 38.2 35 0.00075 22.5 2.3 15 101-115 148-162 (188)
389 PRK15439 autoinducer 2 ABC tra 38.1 87 0.0019 23.9 4.8 44 69-116 442-485 (510)
390 cd02966 TlpA_like_family TlpA- 38.1 40 0.00087 18.8 2.5 18 99-116 97-114 (116)
391 KOG0256 1-aminocyclopropane-1- 38.0 1.8E+02 0.0039 22.1 7.4 70 7-86 193-264 (471)
392 TIGR00195 exoDNase_III exodeox 37.9 93 0.002 21.0 4.6 19 31-49 19-37 (254)
393 PRK06290 aspartate aminotransf 37.9 1.3E+02 0.0029 22.1 5.7 39 37-85 178-216 (410)
394 TIGR00960 3a0501s02 Type II (G 37.4 56 0.0012 21.4 3.4 39 69-111 177-215 (216)
395 PRK05421 hypothetical protein; 37.4 43 0.00092 23.1 2.9 14 36-49 67-80 (263)
396 cd07252 BphC1-RGP6_N_like N-te 37.4 86 0.0019 18.2 4.9 47 68-116 69-115 (120)
397 PRK07337 aminotransferase; Val 37.3 1.1E+02 0.0024 22.0 5.2 19 67-85 182-200 (388)
398 TIGR01288 nodI ATP-binding ABC 37.2 69 0.0015 22.5 4.0 42 68-113 173-214 (303)
399 PF09391 DUF2000: Protein of u 37.1 37 0.0008 21.1 2.3 27 23-49 62-88 (133)
400 PRK14071 6-phosphofructokinase 37.0 76 0.0017 23.3 4.2 14 36-49 198-211 (360)
401 cd04506 SGNH_hydrolase_YpmR_li 37.0 1.1E+02 0.0025 19.6 4.8 18 68-85 149-167 (204)
402 COG0159 TrpA Tryptophan syntha 37.0 1.5E+02 0.0032 20.9 5.5 20 66-85 132-151 (265)
403 cd08361 PpCmtC_N N-terminal do 36.9 90 0.002 18.4 4.8 47 68-116 71-117 (124)
404 cd03240 ABC_Rad50 The catalyti 36.9 46 0.001 22.0 2.9 64 34-110 135-199 (204)
405 cd01828 sialate_O-acetylestera 36.9 1E+02 0.0023 19.1 7.2 61 19-85 66-128 (169)
406 cd07948 DRE_TIM_HCS Saccharomy 36.8 1.4E+02 0.0031 20.7 5.4 32 18-49 105-136 (262)
407 PRK10785 maltodextrin glucosid 36.8 2E+02 0.0043 22.7 6.6 69 22-90 176-248 (598)
408 PRK13546 teichoic acids export 36.8 68 0.0015 22.2 3.8 66 34-113 157-222 (264)
409 PRK10982 galactose/methyl gala 36.7 96 0.0021 23.4 4.9 44 68-115 429-472 (491)
410 PRK04147 N-acetylneuraminate l 36.5 1.2E+02 0.0027 21.2 5.1 21 23-43 84-104 (293)
411 PRK13111 trpA tryptophan synth 36.4 1.5E+02 0.0032 20.7 5.7 19 68-86 129-147 (258)
412 TIGR03392 FeS_syn_CsdA cystein 36.4 1.3E+02 0.0029 21.7 5.5 17 70-86 176-192 (398)
413 cd00609 AAT_like Aspartate ami 36.2 1.1E+02 0.0025 21.1 5.0 43 34-86 128-170 (350)
414 COG1435 Tdk Thymidine kinase [ 36.1 1E+02 0.0023 20.7 4.4 37 39-90 83-119 (201)
415 PRK10261 glutathione transport 36.1 66 0.0014 25.3 4.0 43 68-113 501-543 (623)
416 PRK13547 hmuV hemin importer A 36.1 90 0.002 21.6 4.3 64 37-113 171-234 (272)
417 cd03465 URO-D_like The URO-D _ 36.0 1.5E+02 0.0034 20.8 6.5 18 32-49 175-192 (330)
418 PLN02368 alanine transaminase 36.0 1.8E+02 0.0039 21.6 6.7 53 24-86 194-248 (407)
419 PRK07682 hypothetical protein; 36.0 1.2E+02 0.0026 21.8 5.1 21 66-86 172-192 (378)
420 cd01841 NnaC_like NnaC (CMP-Ne 35.9 1.1E+02 0.0024 19.0 5.5 75 8-85 53-134 (174)
421 COG0329 DapA Dihydrodipicolina 35.9 1.6E+02 0.0035 20.9 5.8 27 22-48 83-110 (299)
422 cd03174 DRE_TIM_metallolyase D 35.9 1.4E+02 0.003 20.2 6.1 31 19-49 109-139 (265)
423 PF04898 Glu_syn_central: Glut 35.8 84 0.0018 22.4 4.1 32 18-49 135-166 (287)
424 PF09142 TruB_C: tRNA Pseudour 35.8 53 0.0011 17.0 2.4 16 103-118 29-44 (56)
425 cd03225 ABC_cobalt_CbiO_domain 35.8 68 0.0015 20.9 3.6 37 68-107 172-208 (211)
426 cd03232 ABC_PDR_domain2 The pl 35.8 1.2E+02 0.0026 19.6 4.7 69 33-113 121-189 (192)
427 PRK04175 rpl7ae 50S ribosomal 35.8 1E+02 0.0023 18.7 5.0 19 68-86 60-78 (122)
428 PRK09140 2-dehydro-3-deoxy-6-p 35.7 1.1E+02 0.0024 20.4 4.6 19 30-48 75-93 (206)
429 PRK13631 cbiO cobalt transport 35.5 68 0.0015 22.9 3.7 41 69-113 215-255 (320)
430 cd01839 SGNH_arylesterase_like 35.5 1E+02 0.0023 19.9 4.4 19 67-85 155-173 (208)
431 PRK10938 putative molybdenum t 35.5 1.9E+02 0.0042 21.8 6.4 65 36-113 417-482 (490)
432 COG1137 YhbG ABC-type (unclass 35.5 1.5E+02 0.0032 20.4 5.6 67 34-114 153-219 (243)
433 cd03017 PRX_BCP Peroxiredoxin 35.5 43 0.00093 20.1 2.4 16 102-117 112-127 (140)
434 PRK09700 D-allose transporter 35.5 87 0.0019 23.8 4.5 45 68-116 447-491 (510)
435 PLN02177 glycerol-3-phosphate 35.5 90 0.002 24.0 4.5 14 35-49 363-376 (497)
436 COG3089 Uncharacterized protei 35.4 64 0.0014 17.6 2.7 29 21-49 32-60 (72)
437 PRK06207 aspartate aminotransf 35.4 1.7E+02 0.0037 21.4 5.9 21 66-86 196-216 (405)
438 TIGR00068 glyox_I lactoylgluta 35.1 1.1E+02 0.0023 18.7 5.6 44 70-117 97-140 (150)
439 COG1099 Predicted metal-depend 35.1 92 0.002 21.6 4.0 43 38-90 94-136 (254)
440 PLN00143 tyrosine/nicotianamin 35.1 1.4E+02 0.0031 21.9 5.4 22 66-87 188-209 (409)
441 PF12681 Glyoxalase_2: Glyoxal 35.1 85 0.0018 17.5 6.1 43 68-115 65-107 (108)
442 cd03246 ABCC_Protease_Secretio 35.0 69 0.0015 20.3 3.4 66 31-111 107-172 (173)
443 cd01838 Isoamyl_acetate_hydrol 35.0 1.2E+02 0.0026 19.1 5.0 18 68-85 143-160 (199)
444 cd01125 repA Hexameric Replica 34.9 1.4E+02 0.0031 20.0 5.9 59 28-91 101-159 (239)
445 TIGR03740 galliderm_ABC gallid 34.8 1.1E+02 0.0023 20.2 4.5 41 69-113 163-203 (223)
446 PLN02591 tryptophan synthase 34.8 1.6E+02 0.0034 20.5 5.9 18 68-85 118-135 (250)
447 COG1134 TagH ABC-type polysacc 34.8 44 0.00095 23.2 2.5 64 36-113 163-226 (249)
448 PRK09580 sufC cysteine desulfu 34.8 1.1E+02 0.0024 20.5 4.6 13 100-113 213-225 (248)
449 PRK11124 artP arginine transpo 34.8 87 0.0019 21.0 4.1 14 99-113 207-220 (242)
450 PLN02564 6-phosphofructokinase 34.8 1.3E+02 0.0028 23.2 5.2 12 38-49 276-287 (484)
451 PRK08637 hypothetical protein; 34.7 1.8E+02 0.0038 21.1 5.8 53 23-85 131-188 (388)
452 cd07253 Glo_EDI_BRP_like_2 Thi 34.7 91 0.002 17.7 5.4 43 70-114 79-121 (125)
453 cd03269 ABC_putative_ATPase Th 34.6 87 0.0019 20.4 4.0 41 69-113 167-207 (210)
454 PLN02783 diacylglycerol O-acyl 34.3 80 0.0017 22.6 3.9 48 34-85 166-213 (315)
455 PRK11288 araG L-arabinose tran 34.2 67 0.0015 24.3 3.7 46 68-117 178-223 (501)
456 TIGR01265 tyr_nico_aTase tyros 34.1 1.7E+02 0.0038 21.3 5.8 19 68-86 189-207 (403)
457 cd02967 mauD Methylamine utili 34.1 42 0.00091 19.3 2.2 13 101-113 97-109 (114)
458 PF00464 SHMT: Serine hydroxym 34.0 1.5E+02 0.0032 22.2 5.3 46 23-86 157-202 (399)
459 cd03264 ABC_drug_resistance_li 33.9 73 0.0016 20.8 3.5 14 99-113 195-208 (211)
460 PRK05718 keto-hydroxyglutarate 33.9 1.2E+02 0.0026 20.4 4.5 17 30-46 79-95 (212)
461 COG3845 ABC-type uncharacteriz 33.9 57 0.0012 25.1 3.2 68 36-117 156-223 (501)
462 TIGR03569 NeuB_NnaB N-acetylne 33.8 1.8E+02 0.0039 21.1 5.6 69 20-89 11-97 (329)
463 cd01836 FeeA_FeeB_like SGNH_hy 33.8 1.3E+02 0.0027 19.1 5.2 18 68-85 137-155 (191)
464 COG0436 Aspartate/tyrosine/aro 33.8 1.3E+02 0.0029 22.1 5.1 23 65-87 180-202 (393)
465 TIGR01978 sufC FeS assembly AT 33.7 1.1E+02 0.0024 20.4 4.5 13 100-113 212-224 (243)
466 cd00984 DnaB_C DnaB helicase C 33.7 1.5E+02 0.0031 19.8 5.9 61 24-88 108-170 (242)
467 cd03008 TryX_like_RdCVF Trypar 33.7 45 0.00099 21.0 2.3 16 100-115 113-128 (146)
468 TIGR00954 3a01203 Peroxysomal 33.6 2.2E+02 0.0049 22.6 6.5 44 65-111 613-656 (659)
469 PRK13649 cbiO cobalt transport 33.5 81 0.0017 21.8 3.8 41 69-113 184-224 (280)
470 TIGR02313 HpaI-NOT-DapA 2,4-di 33.4 1.6E+02 0.0034 20.8 5.2 25 22-46 79-104 (294)
471 PF01784 NIF3: NIF3 (NGG1p int 33.3 1.3E+02 0.0028 20.5 4.7 54 27-88 42-95 (241)
472 cd00951 KDGDH 5-dehydro-4-deox 33.3 1.3E+02 0.0029 21.0 4.9 22 23-44 79-100 (289)
473 TIGR02633 xylG D-xylose ABC tr 33.2 1.2E+02 0.0026 22.9 4.9 43 69-115 442-484 (500)
474 cd03014 PRX_Atyp2cys Peroxired 33.1 51 0.0011 20.0 2.5 17 100-116 110-126 (143)
475 KOG0898 40S ribosomal protein 33.1 38 0.00083 21.3 1.9 10 40-49 89-98 (152)
476 cd03010 TlpA_like_DsbE TlpA-li 33.1 54 0.0012 19.4 2.6 16 102-117 103-118 (127)
477 cd08357 Glo_EDI_BRP_like_18 Th 33.0 1E+02 0.0022 17.7 5.9 46 68-114 76-121 (125)
478 TIGR03873 F420-0_ABC_ATP propo 33.0 1.2E+02 0.0026 20.6 4.5 41 69-113 176-216 (256)
479 cd02072 Glm_B12_BD B12 binding 32.9 1.2E+02 0.0027 18.7 6.1 23 27-49 39-61 (128)
480 TIGR00486 YbgI_SA1388 dinuclea 32.8 1.6E+02 0.0036 20.1 6.0 23 27-49 46-68 (249)
481 cd03213 ABCG_EPDR ABCG transpo 32.8 90 0.002 20.2 3.8 68 33-113 124-191 (194)
482 PRK10261 glutathione transport 32.7 73 0.0016 25.0 3.8 43 68-113 206-248 (623)
483 PRK07505 hypothetical protein; 32.6 2E+02 0.0043 21.0 5.9 37 37-86 178-214 (402)
484 PRK10895 lipopolysaccharide AB 32.4 1.1E+02 0.0025 20.4 4.3 40 70-113 177-216 (241)
485 TIGR00683 nanA N-acetylneurami 32.4 1.6E+02 0.0035 20.7 5.1 22 23-44 81-102 (290)
486 TIGR02717 AcCoA-syn-alpha acet 32.4 2.2E+02 0.0048 21.5 6.1 54 24-88 74-128 (447)
487 PF13263 PHP_C: PHP-associated 32.3 51 0.0011 16.9 2.1 18 72-89 6-23 (56)
488 COG0566 SpoU rRNA methylases [ 32.3 1.7E+02 0.0038 20.3 6.3 82 29-111 125-215 (260)
489 TIGR01188 drrA daunorubicin re 32.2 92 0.002 21.9 3.9 41 69-113 163-203 (302)
490 PRK13548 hmuV hemin importer A 32.2 1.2E+02 0.0025 20.7 4.4 43 68-113 178-220 (258)
491 COG2100 Predicted Fe-S oxidore 32.0 1.7E+02 0.0036 21.6 5.1 48 20-81 237-284 (414)
492 COG2401 ABC-type ATPase fused 31.9 69 0.0015 24.6 3.3 44 34-87 521-564 (593)
493 PRK11288 araG L-arabinose tran 31.9 1.1E+02 0.0024 23.2 4.6 43 69-115 435-477 (501)
494 PRK13545 tagH teichoic acids e 31.9 73 0.0016 24.9 3.5 66 34-113 157-222 (549)
495 PRK14270 phosphate ABC transpo 31.9 1.1E+02 0.0024 20.7 4.2 15 98-113 211-225 (251)
496 COG4555 NatA ABC-type Na+ tran 31.8 61 0.0013 22.3 2.8 16 34-49 147-162 (245)
497 TIGR00972 3a0107s01c2 phosphat 31.8 91 0.002 21.0 3.8 14 99-113 209-222 (247)
498 KOG0358 Chaperonin complex com 31.8 1.9E+02 0.0041 21.8 5.4 45 5-49 237-300 (534)
499 TIGR01324 cysta_beta_ly_B cyst 31.8 1.4E+02 0.003 21.9 4.9 18 69-86 153-170 (377)
500 PRK07004 replicative DNA helic 31.7 1.7E+02 0.0038 22.2 5.5 63 23-88 307-371 (460)
No 1
>PLN02798 nitrilase
Probab=99.95 E-value=4.9e-27 Score=162.54 Aligned_cols=117 Identities=78% Similarity=1.178 Sum_probs=100.5
Q ss_pred cccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE
Q 033342 5 HSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL 84 (121)
Q Consensus 5 ~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i 84 (121)
..||||++|++..+|.+.|++++.+++++|++.|+|||||||++..+|+...+...+++..+++..+.++++|+++++.|
T Consensus 9 ~~~ria~~Q~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~A~~~~i~i 88 (286)
T PLN02798 9 SSVRVAVAQMTSTNDLAANFATCSRLAKEAAAAGAKLLFLPECFSFIGDKDGESLAIAEPLDGPIMQRYRSLARESGLWL 88 (286)
T ss_pred CccEEEEEEccCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCccccCcCchhhhhhcccCCCHHHHHHHHHHHHcCeEE
Confidence 57999999999889999999999999999999999999999986436776555445555567788999999999999999
Q ss_pred EeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 85 SLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 85 i~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++|++.++..+++++||++++|+|+|++++.|+|+||
T Consensus 89 v~G~~~~~~~~~~~~yNs~~vi~~~G~i~~~y~K~~L 125 (286)
T PLN02798 89 SLGGFQEKGPDDSHLYNTHVLIDDSGEIRSSYRKIHL 125 (286)
T ss_pred EEeeeEcccCCCCceEEEEEEECCCCCEEEEEEEEEe
Confidence 9987665322457899999999999999999999986
No 2
>PLN02747 N-carbamolyputrescine amidase
Probab=99.95 E-value=5.7e-27 Score=162.84 Aligned_cols=117 Identities=29% Similarity=0.361 Sum_probs=98.6
Q ss_pred CCCCcccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCc----hhhhcccCC-CChHHHHHHH
Q 033342 1 MAGAHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDA----DNIKIAEPL-DGPIMQGYCS 75 (121)
Q Consensus 1 ~~~~~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~----~~~~~~~~~-~~~~~~~l~~ 75 (121)
|.+.+.+|||++|+++.+|.+.|++++.+++++|++.|+|||||||+++ +||... +....+... .++.++.+++
T Consensus 1 ~~~~~~~~va~~Q~~~~~d~~~N~~~i~~~i~~A~~~gadlvvfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (296)
T PLN02747 1 MGMGRKVVVAALQFACSDDRAANVDKAERLVREAHAKGANIILIQELFE-GYYFCQAQREDFFQRAKPYEGHPTIARMQK 79 (296)
T ss_pred CCCCcceEEEEEEecCCCCHHHHHHHHHHHHHHHHHCCCcEEEcccccC-CCCCccccccchhhhcccCCCChHHHHHHH
Confidence 5556789999999998899999999999999999999999999999998 777543 222233322 2478899999
Q ss_pred HHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 76 LARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 76 ~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|++++++|++|...+ .++++||++++|+|+|+++++|+|.||
T Consensus 80 ~a~~~~i~i~~g~~~~---~~~~~yNs~~~i~~~G~i~~~y~K~hL 122 (296)
T PLN02747 80 LAKELGVVIPVSFFEE---ANNAHYNSIAIIDADGTDLGLYRKSHI 122 (296)
T ss_pred HHHHcCeEEEeeeeec---CCCceEEEEEEECCCCCCcceEEEEec
Confidence 9999999999986544 567899999999999999999999997
No 3
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.95 E-value=1.2e-26 Score=157.86 Aligned_cols=111 Identities=32% Similarity=0.506 Sum_probs=97.9
Q ss_pred EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
|||++|+++. .|.+.|++++.+++++|++.|+|||||||+++ +||...+....+....++..+.++++|+++++++++
T Consensus 1 rva~~Q~~~~~~d~~~n~~~i~~~i~~A~~~g~dlvv~PE~~l-~g~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 79 (253)
T cd07583 1 KIALIQLDIVWGDPEANIERVESLIEEAAAAGADLIVLPEMWN-TGYFLDDLYELADEDGGETVSFLSELAKKHGVNIVA 79 (253)
T ss_pred CEEEEEeecCcCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccC-CCCChhhHHhhhcccCchHHHHHHHHHHHcCcEEEe
Confidence 6999999986 89999999999999999999999999999999 888765443334456788999999999999999999
Q ss_pred ccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 87 GGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 87 G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
|++++. .++++||++++|+|+|++++.|+|+||
T Consensus 80 G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~~l 112 (253)
T cd07583 80 GSVAEK--EGGKLYNTAYVIDPDGELIATYRKIHL 112 (253)
T ss_pred ceEEec--CCCcEEEEEEEECCCCcEEEEEeeeeC
Confidence 977653 557899999999999999999999997
No 4
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=99.95 E-value=2e-26 Score=158.62 Aligned_cols=111 Identities=31% Similarity=0.504 Sum_probs=94.4
Q ss_pred cEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch----hhhcccCC-CChHHHHHHHHHHHcC
Q 033342 7 VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD----NIKIAEPL-DGPIMQGYCSLARESS 81 (121)
Q Consensus 7 ~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~----~~~~~~~~-~~~~~~~l~~~a~~~~ 81 (121)
||||++|+++.+|.++|++++.+++++|+++|+|||||||+++ +||...+ ....++.. +++..+.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlivfPE~~~-~gy~~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~ 79 (279)
T TIGR03381 1 VTVAALQMACSDDVETNIARAERLVREAAARGAQIILLPELFE-GPYFCKDQDEDYFALAQPVEGHPAIKRFQALAKELG 79 (279)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCCEEEcccccC-CCCcCCccccchHhhcCcCCCChHHHHHHHHHHHcC
Confidence 6899999998899999999999999999999999999999998 7875432 22233322 3578899999999999
Q ss_pred cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++|++|..++ .++++||++++++|+|++++.|+|+||
T Consensus 80 i~i~~g~~~~---~~~~~yNs~~~i~~~G~i~~~y~K~hL 116 (279)
T TIGR03381 80 VVIPVSFFEK---AGNAYYNSLAMIDADGSVLGVYRKSHI 116 (279)
T ss_pred cEEEEeeeec---CCCceEEeEEEECCCCCEEEEEEeeec
Confidence 9999996443 556899999999999999999999997
No 5
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=99.94 E-value=2.3e-26 Score=157.30 Aligned_cols=113 Identities=41% Similarity=0.629 Sum_probs=96.8
Q ss_pred EEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhc--ccCCCChHHHHHHHHHHHcCcEEE
Q 033342 8 RVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKI--AEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 8 ~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
|||++|+++.+|.++|++++.+++++|+++++|||||||+++ +||...+.... .....++..+.++++|++++++|+
T Consensus 1 kia~~Q~~~~~d~~~n~~~~~~~i~~A~~~g~dlivfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i~ 79 (265)
T cd07572 1 RVALIQMTSTADKEANLARAKELIEEAAAQGAKLVVLPECFN-YPGGTDAFKLALAEEEGDGPTLQALSELAKEHGIWLV 79 (265)
T ss_pred CEEEEEeeCCCCHHHHHHHHHHHHHHHHHCCCCEEECCcccc-CcCcchhhhhhhhccccCChHHHHHHHHHHHCCeEEE
Confidence 699999998899999999999999999999999999999998 78876543332 334567889999999999999999
Q ss_pred eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|+++++...++++||++++++|+|++++.|+|+||
T Consensus 80 ~G~~~~~~~~~~~~yNs~~~i~~~G~i~~~y~K~~l 115 (265)
T cd07572 80 GGSIPERDDDDGKVYNTSLVFDPDGELVARYRKIHL 115 (265)
T ss_pred EeeeccccCCCCcEEEEEEEECCCCeEEeEEeeEEe
Confidence 997765422237899999999999999999999986
No 6
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.94 E-value=4e-26 Score=157.88 Aligned_cols=114 Identities=30% Similarity=0.466 Sum_probs=95.2
Q ss_pred cccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch----hhhcccCC-CChHHH
Q 033342 5 HSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD----NIKIAEPL-DGPIMQ 71 (121)
Q Consensus 5 ~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~----~~~~~~~~-~~~~~~ 71 (121)
+++|||++|+++. .+.++|++++.+++++|+++|+|||||||+++ +||...+ +...++.. +++.++
T Consensus 2 ~~~rva~vQ~~~~~~~~~~~~~~~~~nl~~~~~~i~~A~~~gadlvvfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (287)
T cd07568 2 RIVRVGLIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFY-GPYFCAEQDTKWYEFAEEIPNGPTTK 80 (287)
T ss_pred ceEEEEEEEeecccccccccccCHHHHHHHHHHHHHHHHHcCCcEEEcccccC-CCCCccccccchhhhcccCCCChHHH
Confidence 5799999999964 78899999999999999999999999999998 6765321 22233333 567899
Q ss_pred HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
.++++|++++++|++|..++. .++++||++++|+|+|++++.|+|+||
T Consensus 81 ~l~~~a~~~~i~ii~g~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~hL 128 (287)
T cd07568 81 RFAALAKEYNMVLILPIYEKE--QGGTLYNTAAVIDADGTYLGKYRKNHI 128 (287)
T ss_pred HHHHHHHHCCEEEEEEeEEEc--CCCcEEEEEEEECCCCcEeeEEeeeec
Confidence 999999999999999865542 356899999999999999999999997
No 7
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.94 E-value=8.3e-26 Score=153.86 Aligned_cols=110 Identities=42% Similarity=0.598 Sum_probs=95.3
Q ss_pred EEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch--hhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 9 VAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD--NIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 9 ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
||++|++..+|.++|++++.+.+++|+++|+|+|||||+++ +||...+ +...+....+++.+.++++|+++++++++
T Consensus 1 ia~~Q~~~~~d~~~n~~~~~~~i~~a~~~g~dlivfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv~ 79 (255)
T cd07581 1 VALAQFASSGDKEENLEKVRRLLAEAAAAGADLVVFPEYTM-ARFGDGLDDYARVAEPLDGPFVSALARLARELGITVVA 79 (255)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCCEEECcchhc-CCCCcchhhHHhhhccCCCHHHHHHHHHHHHcCeEEEE
Confidence 68999998899999999999999999999999999999998 7876544 23344556678899999999999999999
Q ss_pred ccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 87 GGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 87 G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
|+..+. .++++||++++|+|+|++++.|+|+||
T Consensus 80 G~~~~~--~~~~~yNs~~~i~~~G~i~~~y~K~~L 112 (255)
T cd07581 80 GMFEPA--GDGRVYNTLVVVGPDGEIIAVYRKIHL 112 (255)
T ss_pred EeeeeC--CCCcEEEeEEEECCCCcEEEEEeeecc
Confidence 976542 345899999999999999999999997
No 8
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=99.94 E-value=8.1e-26 Score=156.96 Aligned_cols=111 Identities=22% Similarity=0.334 Sum_probs=93.4
Q ss_pred EEEEEEeccc-cCHHHHHHHHHHHHHHHHH----CCCcEEEccCCccCCCCCCchh---hhcccC-CCChHHHHHHHHHH
Q 033342 8 RVAVAQMTSI-NDLAANFATCSRLVKEAAS----AGAKLLCFPENFSYVGDKDADN---IKIAEP-LDGPIMQGYCSLAR 78 (121)
Q Consensus 8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~----~~~dlvv~PE~~~~~~~~~~~~---~~~~~~-~~~~~~~~l~~~a~ 78 (121)
|||++|+++. +|.+.|++++.+++++|++ .++|||||||+++ +||...+. ..+++. .+++..+.++++|+
T Consensus 1 rIA~vQ~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~gadLIVfPEl~l-tGY~~~~~~~~~~~ae~~~~g~~~~~l~~lAk 79 (295)
T cd07566 1 RIACLQLNPQIGQVEENLSRAWELLDKTKKRAKLKKPDILVLPELAL-TGYNFHSLEHIKPYLEPTTSGPSFEWAREVAK 79 (295)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhhccCCCCcEEEcCCCCc-ccCCcccHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6999999986 8999999999999999987 8999999999998 88865422 223332 35788899999999
Q ss_pred HcCcEEEeccceeecCCC--CceEEEEEEECCCCCEEeeeecCCC
Q 033342 79 ESSMWLSLGGFQEKGSDD--ARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 79 ~~~~~ii~G~~~~~~~~~--~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+++++|++|+.++. .+ +++|||+++|+|+|+++++|+|+||
T Consensus 80 ~~~i~Iv~G~~e~~--~~~~~~~yNta~vi~~~G~ii~~YrK~HL 122 (295)
T cd07566 80 KFNCHVVIGYPEKV--DESSPKLYNSALVVDPEGEVVFNYRKSFL 122 (295)
T ss_pred hcCCEEEEeeeEec--CCCCCceEEEEEEEcCCCeEEEEEecccc
Confidence 99999999965542 22 5899999999999999999999997
No 9
>PLN02504 nitrilase
Probab=99.94 E-value=1.5e-25 Score=158.51 Aligned_cols=114 Identities=27% Similarity=0.417 Sum_probs=96.4
Q ss_pred CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch-------------------hhhccc
Q 033342 4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD-------------------NIKIAE 63 (121)
Q Consensus 4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~-------------------~~~~~~ 63 (121)
.+++|||++|+++. .|...|++++.+++++|++.|+|||||||+++ +||+... ....+.
T Consensus 22 ~~~~kiAlvQ~~~~~~d~~~nl~~~~~li~eAa~~gadLIVfPE~~l-tGyp~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 100 (346)
T PLN02504 22 SSTVRATVVQASTVFYDTPATLDKAERLIAEAAAYGSQLVVFPEAFI-GGYPRGSTFGLAIGDRSPKGREDFRKYHASAI 100 (346)
T ss_pred CCceEEEEEEcCcccCCHHHHHHHHHHHHHHHHHCCCeEEEeCcccc-ccCCcchhhccccccccchhHHHHHHHHHhcc
Confidence 45799999999975 89999999999999999999999999999999 8886411 111233
Q ss_pred CCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 64 PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 64 ~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
..+++.++.|+++|++++++|++|...+ .++++||++++|+|+|++++.|+|+|+
T Consensus 101 ~~~g~~i~~l~~~A~~~~i~iv~G~~e~---~~~~~yNsa~~i~~~G~i~~~yrK~~p 155 (346)
T PLN02504 101 DVPGPEVDRLAAMAGKYKVYLVMGVIER---DGYTLYCTVLFFDPQGQYLGKHRKLMP 155 (346)
T ss_pred cCCCHHHHHHHHHHHHcCCEEEEeeeec---CCCceEEEEEEECCCCCEEeEEeeccC
Confidence 3467889999999999999999996544 567899999999999999999999985
No 10
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=99.94 E-value=1.5e-25 Score=154.66 Aligned_cols=112 Identities=32% Similarity=0.563 Sum_probs=96.5
Q ss_pred cEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch----hhhccc-CCCChHHHHHHHHHHHcC
Q 033342 7 VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD----NIKIAE-PLDGPIMQGYCSLARESS 81 (121)
Q Consensus 7 ~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~----~~~~~~-~~~~~~~~~l~~~a~~~~ 81 (121)
||||++|+++..|.++|++++.+++++|++.++|||||||+++ +||...+ ....++ ..+++.++.++++|++++
T Consensus 1 ~~ia~~Q~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~~~ 79 (284)
T cd07573 1 VTVALVQMACSEDPEANLAKAEELVREAAAQGAQIVCLQELFE-TPYFCQEEDEDYFDLAEPPIPGPTTARFQALAKELG 79 (284)
T ss_pred CEEEEEEeeccCCHHHHHHHHHHHHHHHHHCCCcEEEcccccc-CCCCcccccchhHHhccccCCCHHHHHHHHHHHHCC
Confidence 6899999999899999999999999999999999999999998 7776532 223333 456788999999999999
Q ss_pred cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++|++|..++. .++++||++++++|+|++++.|+|.||
T Consensus 80 i~iv~g~~~~~--~~~~~yNs~~v~~~~G~i~~~y~K~~l 117 (284)
T cd07573 80 VVIPVSLFEKR--GNGLYYNSAVVIDADGSLLGVYRKMHI 117 (284)
T ss_pred EEEEecceeeC--CCCcEEEEEEEECCCCCEEeEEeeecc
Confidence 99999976552 456899999999999999999999986
No 11
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=99.94 E-value=2e-25 Score=155.18 Aligned_cols=111 Identities=34% Similarity=0.501 Sum_probs=94.4
Q ss_pred cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh--------------hhcccCCCChHHH
Q 033342 7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN--------------IKIAEPLDGPIMQ 71 (121)
Q Consensus 7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~--------------~~~~~~~~~~~~~ 71 (121)
||||++|+++. +|.+.|++++.+++++|+++|+|||||||+++ +||...+. .+.+...++++++
T Consensus 1 ~kia~~Q~~~~~~d~~~nl~~~~~~i~~A~~~ga~lvvfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (297)
T cd07564 1 VKVAAVQAAPVFLDLAATVEKACRLIEEAAANGAQLVVFPEAFI-PGYPYWIWFGAPAEGRELFARYYENSVEVDGPELE 79 (297)
T ss_pred CEEEEEecCcccCCHHHHHHHHHHHHHHHHHCCCCEEEeccccc-cCCCchhhcCCcccchHHHHHHHHhCcCCCCHHHH
Confidence 68999999874 89999999999999999999999999999998 78764221 1122334678899
Q ss_pred HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
.|+++|++++++|++|+..+ .++++||++++|+|+|++++.|+|+||
T Consensus 80 ~l~~~a~~~~i~iv~G~~~~---~~~~~yNs~~vi~~~G~i~~~y~K~~l 126 (297)
T cd07564 80 RLAEAARENGIYVVLGVSER---DGGTLYNTQLLIDPDGELLGKHRKLKP 126 (297)
T ss_pred HHHHHHHHcCcEEEEeeEec---cCCceEEEEEEEcCCCCEeeeeeccCC
Confidence 99999999999999996544 466899999999999999999999986
No 12
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=99.93 E-value=2.7e-25 Score=151.16 Aligned_cols=110 Identities=37% Similarity=0.562 Sum_probs=94.9
Q ss_pred EEEEEEecc-ccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh-hhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 8 RVAVAQMTS-INDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN-IKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 8 ~ia~vQ~~~-~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
|||++|+++ .+|.+.|++++.+++++|+++|+|||||||+++ +||...+. ...+....++..+.++++|++++++++
T Consensus 1 kva~~Q~~~~~~d~~~n~~~i~~~i~~a~~~ga~lvv~PE~~l-~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 79 (254)
T cd07576 1 RLALYQGPARDGDVAANLARLDEAAARAAAAGADLLVFPELFL-TGYNIGDAVARLAEPADGPALQALRAIARRHGIAIV 79 (254)
T ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEccCccc-cCCCCcchhhhhhcccCChHHHHHHHHHHHcCCEEE
Confidence 799999998 489999999999999999999999999999999 88776432 222334567889999999999999999
Q ss_pred eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|.... .++++||++++++|+|++++.|+|+||
T Consensus 80 ~G~~~~---~~~~~yNs~~~i~~~G~i~~~y~K~~l 112 (254)
T cd07576 80 VGYPER---AGGAVYNAAVLIDEDGTVLANYRKTHL 112 (254)
T ss_pred Eecccc---CCCceEEEEEEECCCCCEeeEEEeecc
Confidence 995443 557899999999999999999999996
No 13
>PF00795 CN_hydrolase: Carbon-nitrogen hydrolase The Prosite family is specific to nitrilases The Prosite family is specific to UPF0012; InterPro: IPR003010 This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production []. They all have distinct substrate specificity and include cyanide hydratases, aliphatic amidases, beta-alanine synthase, and a few other proteins with unknown molecular function. Sequence conservation over the entire length, as well as the similarity in the reactions catalyzed by the known enzymes in this family, points to a common catalytic mechanism. They have an invariant cysteine that is part of the catalytic site in nitrilases. Another highly conserved motif includes an invariant glutamic acid that might also be involved in catalysis [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0006807 nitrogen compound metabolic process; PDB: 2E2L_D 2E2K_D 2DYV_A 2DYU_B 3KLC_B 3IW3_A 3KI8_A 3IVZ_A 1EMS_A 2GGK_B ....
Probab=99.93 E-value=1.1e-25 Score=146.65 Aligned_cols=110 Identities=40% Similarity=0.579 Sum_probs=92.9
Q ss_pred EEEEEEecc---ccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCC--------chhhhcccCCCChHHHHHHHH
Q 033342 8 RVAVAQMTS---INDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKD--------ADNIKIAEPLDGPIMQGYCSL 76 (121)
Q Consensus 8 ~ia~vQ~~~---~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~ 76 (121)
|||++|+++ ..|.++|++++.+++++|+++++|||||||+++ +||.. .+....+....++.++.+.++
T Consensus 1 ~VA~~Q~~~~~~~~~~~~n~~~i~~~~~~a~~~~~dlvv~PE~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (186)
T PF00795_consen 1 RVALVQLNIDQSWGDPEENLKKILSLIEEAARQGADLVVFPEMAL-PGYPNPGWCEDDFADLDEFAEPLDGPYLERLAEL 79 (186)
T ss_dssp EEEEEEB-B-SSTTHHHHHHHHHHHHHHHHHHTTESEEEEETTTT-TCS-GGGSGHSSHHHHHHHHBHSTSHHHHHHHHH
T ss_pred CEEEEECCccCccCCHHHHHHHHHHHHHHHHHCCCCEEEcCcchh-cccccccccccccchhhhhccccccHHHHHHHHH
Confidence 799999994 489999999999999999999999999999999 77722 122333444558899999999
Q ss_pred HHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 77 ARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 77 a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
|+++++++++|.... +++++||++++++|+|++++.|+|+||
T Consensus 80 a~~~~~~i~~G~~~~---~~~~~~N~~~~~~~~g~~~~~y~K~~l 121 (186)
T PF00795_consen 80 AKENGITIVAGIPER---DDGGLYNSAVVIDPDGEILGRYRKIHL 121 (186)
T ss_dssp HHHHTSEEEEEEEEE---ETTEEEEEEEEEETTSEEEEEEEGSST
T ss_pred HHhcCCccccccccc---ccccccceeEEEEeeecccccccceee
Confidence 999999999995444 667899999999999999999999997
No 14
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.93 E-value=3.4e-25 Score=152.91 Aligned_cols=107 Identities=40% Similarity=0.555 Sum_probs=92.8
Q ss_pred EEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 8 RVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 8 ~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
|||++|+++..|.++|++++.+++++|+++|+|||||||+++ +||.... ..+...+++.++.++++|++++++|++|
T Consensus 1 ria~~Q~~~~~d~~~Nl~~~~~~i~~A~~~gadlvvfPE~~l-tG~~~~~--~~~~~~~~~~~~~l~~lA~~~~i~iv~G 77 (279)
T cd07579 1 RIAVAQFAPTPDIAGNLATIDRLAAEAKATGAELVVFPELAL-TGLDDPA--SEAESDTGPAVSALRRLARRLRLYLVAG 77 (279)
T ss_pred CEEEEeccCccCHHHHHHHHHHHHHHHHHCCCCEEEeCCccc-cCCCChH--HhcccCCCHHHHHHHHHHHHcCeEEEEe
Confidence 699999998779999999999999999999999999999998 7876432 2344456788999999999999999999
Q ss_pred cceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 88 GFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 88 ~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+..+ .++++||++++++|+| +++.|+|+||
T Consensus 78 ~~~~---~~~~~yNs~~vi~~~G-~i~~Y~K~hL 107 (279)
T cd07579 78 FAEA---DGDGLYNSAVLVGPEG-LVGTYRKTHL 107 (279)
T ss_pred ceEc---cCCcEEEEEEEEeCCe-eEEEEecccC
Confidence 6544 5568999999999999 5699999997
No 15
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=99.93 E-value=4.2e-25 Score=153.26 Aligned_cols=113 Identities=26% Similarity=0.389 Sum_probs=94.6
Q ss_pred cEEEEEEecc-----ccCHHHHHHHHHHHHHHHHH--CCCcEEEccCCccCCCCCCc--hhhhcccCCCChHHHHHHHHH
Q 033342 7 VRVAVAQMTS-----INDLAANFATCSRLVKEAAS--AGAKLLCFPENFSYVGDKDA--DNIKIAEPLDGPIMQGYCSLA 77 (121)
Q Consensus 7 ~~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~~--~~~dlvv~PE~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~a 77 (121)
++||++|+++ .++.+.|++++.+++++|++ .|+|||||||+++ +||..+ ....+++..+++..+.++++|
T Consensus 1 ~~Ia~~Q~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~gadLvvfPE~~l-tGy~~~~~~~~~~a~~~~~~~~~~l~~lA 79 (291)
T cd07565 1 VGVAVVQYKVPVLHTKEEVLENAERIADMVEGTKRGLPGMDLIVFPEYST-QGLMYDKWTMDETACTVPGPETDIFAEAC 79 (291)
T ss_pred CeEEEEecccccccccccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCccc-ccCCCCcchhhhhccCCCChhHHHHHHHH
Confidence 4799999997 37999999999999999986 5999999999999 887642 234455556778999999999
Q ss_pred HHcCcEEEeccceeecCC-CCceEEEEEEECCCCCEEeeeecCCC
Q 033342 78 RESSMWLSLGGFQEKGSD-DARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 78 ~~~~~~ii~G~~~~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+++++++++|..++ ... ++++||++++|+|+|+++++|+|+||
T Consensus 80 ~~~~i~i~~g~~e~-~~~~~~~~yNsa~~i~~~G~i~~~YrK~hl 123 (291)
T cd07565 80 KEAKVWGVFSIMER-NPDHGKNPYNTAIIIDDQGEIVLKYRKLHP 123 (291)
T ss_pred HHCCeEEEEEeeee-cCCCCCceEEEEEEECCCCcEEEEEEeccc
Confidence 99999999885544 211 16899999999999999999999996
No 16
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.93 E-value=5e-25 Score=150.30 Aligned_cols=112 Identities=37% Similarity=0.639 Sum_probs=95.1
Q ss_pred EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh----hhcccCCCChHHHHHHHHHHHcCc
Q 033342 8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN----IKIAEPLDGPIMQGYCSLARESSM 82 (121)
Q Consensus 8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~a~~~~~ 82 (121)
|||++|++.. +|.+.|++++.+++++|++.++|||||||+++ +||..... ..+++...++..+.++++|+++++
T Consensus 1 ria~~q~~~~~~d~~~n~~~~~~~i~~a~~~ga~liv~PE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 79 (258)
T cd07584 1 KVALIQMDSVLGDVKANLKKAAELCKEAAAEGADLICFPELAT-TGYRPDLLGPKLWELSEPIDGPTVRLFSELAKELGV 79 (258)
T ss_pred CEEEEEecCccCCHHHHHHHHHHHHHHHHHcCCCEEEcccccc-cCCCccccchhhHhhccCCCCcHHHHHHHHHHHcCe
Confidence 6999999874 89999999999999999999999999999999 88865422 223444566789999999999999
Q ss_pred EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|++|+... ...++++||++++|+|+|++++.|+|+||
T Consensus 80 ~i~~G~~~~-~~~~~~~~Ns~~~i~~~G~i~~~y~K~~l 117 (258)
T cd07584 80 YIVCGFVEK-GGVPGKVYNSAVVIDPEGESLGVYRKIHL 117 (258)
T ss_pred EEEEeehcc-cCCCCceEEEEEEECCCCCEEeEEEeecC
Confidence 999997654 22346899999999999999999999997
No 17
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=99.93 E-value=6e-25 Score=156.26 Aligned_cols=115 Identities=24% Similarity=0.361 Sum_probs=94.9
Q ss_pred cccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCC--c---hhhhcccCC-CChHH
Q 033342 5 HSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKD--A---DNIKIAEPL-DGPIM 70 (121)
Q Consensus 5 ~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~--~---~~~~~~~~~-~~~~~ 70 (121)
+.||||++|+++. +|.+.|++++.+++++|++.|+|||||||+++ +||.. . .+..+++.. +++..
T Consensus 62 ~~~rIAlvQ~~~~~~~~~p~~~d~~~nl~ki~~~i~~Aa~~gadLivfPE~~l-~g~~~~~~~~~~~~~~ae~~~~g~~~ 140 (363)
T cd07587 62 RIVRVGLIQNKIVLPTTAPIAEQREAIHDRIKKIIEAAAMAGVNIICFQEAWT-MPFAFCTREKLPWCEFAESAEDGPTT 140 (363)
T ss_pred ceEEEEEEeccccccccCccccCHHHHHHHHHHHHHHHHHcCCCEEEcccccc-CCccccccccchHHHHhhccCCChHH
Confidence 4699999999853 48999999999999999999999999999998 66642 1 123445543 57889
Q ss_pred HHHHHHHHHcCcEEEeccceeecCC-CCceEEEEEEECCCCCEEeeeecCCC
Q 033342 71 QGYCSLARESSMWLSLGGFQEKGSD-DARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 71 ~~l~~~a~~~~~~ii~G~~~~~~~~-~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+.++++|++++++|++|..++ ... ++++||++++|+|+|++++.|+|+||
T Consensus 141 ~~l~~lAk~~~i~Iv~gi~e~-~~~~~~~~yNta~vi~~~G~ilg~yrK~hL 191 (363)
T cd07587 141 KFCQELAKKYNMVIVSPILER-DEEHGDTIWNTAVVISNSGNVLGKSRKNHI 191 (363)
T ss_pred HHHHHHHHHcCcEEEEeeeee-ecCCCCcEEEEEEEECCCCCEEeeeeeEec
Confidence 999999999999998885444 222 46899999999999999999999996
No 18
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=99.93 E-value=4.7e-25 Score=153.66 Aligned_cols=114 Identities=33% Similarity=0.361 Sum_probs=93.2
Q ss_pred cccEEEEEEeccc---cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch-------hhhcccC-CCChHHHHH
Q 033342 5 HSVRVAVAQMTSI---NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD-------NIKIAEP-LDGPIMQGY 73 (121)
Q Consensus 5 ~~~~ia~vQ~~~~---~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~-------~~~~~~~-~~~~~~~~l 73 (121)
+++|||++|+++. .+.++|++++.+++++|++.|+|||||||+++ +||.... ...+.+. ..++..+.+
T Consensus 2 ~~~rva~~Q~~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 80 (302)
T cd07569 2 RQVILAAAQMGPIARAETRESVVARLIALLEEAASRGAQLVVFPELAL-TTFFPRWYFPDEAELDSFFETEMPNPETQPL 80 (302)
T ss_pred ceEEEEEEeeccccccCCHHHHHHHHHHHHHHHHhCCCcEEEcccccc-cCcccccccCChHHhhhhhhhcCCChhHHHH
Confidence 4799999999864 38899999999999999999999999999999 7764321 1112222 456788899
Q ss_pred HHHHHHcCcEEEeccceeecCCCC---ceEEEEEEECCCCCEEeeeecCCC
Q 033342 74 CSLARESSMWLSLGGFQEKGSDDA---RLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 74 ~~~a~~~~~~ii~G~~~~~~~~~~---~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+++|+++++.+++|..+.. .++ ++||++++|+|+|+++++|+|+||
T Consensus 81 ~~~a~~~~i~iv~G~~~~~--~~~~~~~~yNsa~~i~~~G~i~~~y~K~~l 129 (302)
T cd07569 81 FDRAKELGIGFYLGYAELT--EDGGVKRRFNTSILVDKSGKIVGKYRKVHL 129 (302)
T ss_pred HHHHHHhCeEEEEeceeec--CCCCcceeeeEEEEECCCCCEeeeeeEEec
Confidence 9999999999999965442 333 799999999999999999999996
No 19
>PLN00202 beta-ureidopropionase
Probab=99.93 E-value=7.2e-25 Score=157.52 Aligned_cols=117 Identities=26% Similarity=0.340 Sum_probs=97.0
Q ss_pred CcccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCC----chhhhcccCCCChHHH
Q 033342 4 AHSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKD----ADNIKIAEPLDGPIMQ 71 (121)
Q Consensus 4 ~~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~----~~~~~~~~~~~~~~~~ 71 (121)
.+.+|||++|+++. .+.+.|++++.+++++|+..|+|||||||+|+ +||.. ..+...++..+++..+
T Consensus 84 ~~~~rValiQ~~i~~~~~~~~~~~~~~nl~~~~~li~~Aa~~gadLVvfPE~~~-~g~~~~~~~~~~~~~ae~~~g~~~~ 162 (405)
T PLN00202 84 PRVVRVGLIQNSIALPTTAPFADQKRAIMDKVKPMIDAAGAAGVNILCLQEAWT-MPFAFCTREKRWCEFAEPVDGESTK 162 (405)
T ss_pred CCeEEEEEEecccccCCCCcccCCHHHHHHHHHHHHHHHHHCCCCEEEecchhc-cccccccccchHHHHhhhCCCHHHH
Confidence 35799999999963 48999999999999999999999999999988 66642 1234455656788899
Q ss_pred HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
.++++|++++++|++|..++....++++|||+++|+++|+++++|+|+||
T Consensus 163 ~l~~lA~~~~i~Iv~G~~e~~~~~~~~~yNSa~vI~~~G~iig~YrKiHL 212 (405)
T PLN00202 163 FLQELARKYNMVIVSPILERDVNHGETLWNTAVVIGNNGNIIGKHRKNHI 212 (405)
T ss_pred HHHHHHHHCCeEEEEEeeeeecCCCCcEEEEEEEECCCCcEEEEEecccC
Confidence 99999999999999995443211245799999999999999999999997
No 20
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.93 E-value=1.6e-24 Score=147.95 Aligned_cols=112 Identities=29% Similarity=0.380 Sum_probs=94.3
Q ss_pred cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh---hhcccCCCChHHHHHHHHHHHcCc
Q 033342 7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN---IKIAEPLDGPIMQGYCSLARESSM 82 (121)
Q Consensus 7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~a~~~~~ 82 (121)
+|||++|++.. +|.+.|++++.+++++|+++|+|||||||+++ +||...+. ..+.+..+++..+.++++|+++++
T Consensus 1 ~ria~~Q~~~~~~d~~~n~~~~~~~i~~A~~~gadlivfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 79 (258)
T cd07578 1 YKAAAIQFEPEMGEKERNIERLLALCEEAARAGARLIVTPEMAT-TGYCWYDRAEIAPFVEPIPGPTTARFAELAREHDC 79 (258)
T ss_pred CeEEEEEecCccccHHHHHHHHHHHHHHHHhCCCCEEEcccccc-cCCCcCCHHHhhhhcccCCCHHHHHHHHHHHHcCc
Confidence 58999999985 89999999999999999999999999999999 88875432 234444566789999999999999
Q ss_pred EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
.|++|.... ...++++||++++|+|+| +++.|+|+||
T Consensus 80 ~ii~G~~~~-~~~~~~~yNs~~vi~~~g-~~~~y~K~h~ 116 (258)
T cd07578 80 YIVVGLPEV-DSRSGIYYNSAVLIGPSG-VIGRHRKTHP 116 (258)
T ss_pred EEEEeccee-cCCCCCeeEEEEEECCCC-cEEeEeeecC
Confidence 999997554 223468999999999988 6799999996
No 21
>PRK13287 amiF formamidase; Provisional
Probab=99.92 E-value=2.4e-24 Score=151.78 Aligned_cols=115 Identities=24% Similarity=0.429 Sum_probs=95.4
Q ss_pred CcccEEEEEEecc-----ccCHHHHHHHHHHHHHHHHHC--CCcEEEccCCccCCCCCCch--hhhcccCCCChHHHHHH
Q 033342 4 AHSVRVAVAQMTS-----INDLAANFATCSRLVKEAASA--GAKLLCFPENFSYVGDKDAD--NIKIAEPLDGPIMQGYC 74 (121)
Q Consensus 4 ~~~~~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~~~--~~dlvv~PE~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ 74 (121)
...+|||++|+++ ..+.++|++++.+++++|++. ++|||||||+++ +||..+. ....+...+++..+.++
T Consensus 11 ~~~l~VAlvQ~~~~~~~~~~d~~~Nl~~i~~~i~~A~~~~~gadLVVfPE~~l-~G~~~~~~~~~~~a~~~~g~~~~~l~ 89 (333)
T PRK13287 11 IEGVLVALIQYPVPVVESRADIDKQIEQIIKTVHKTKAGYPGLDLIVFPEYST-QGLNTKKWTTEEFLCTVDGPEVDAFA 89 (333)
T ss_pred CCceEEEEEEcccccCCchhhHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccc-ccCCccccchhhhcccCCCHHHHHHH
Confidence 4679999999996 278999999999999999864 899999999999 8887652 22344456778899999
Q ss_pred HHHHHcCcEEEeccceeecCCCC-ceEEEEEEECCCCCEEeeeecCCC
Q 033342 75 SLARESSMWLSLGGFQEKGSDDA-RLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 75 ~~a~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++|+++++++++|..++ . .++ ++|||+++++|+|+++++|+|+||
T Consensus 90 ~~a~~~~i~~~~g~~e~-~-~~~~~~yNsa~vi~~~G~i~~~YrK~h~ 135 (333)
T PRK13287 90 QACKENKVWGVFSIMER-N-PDGNEPYNTAIIIDDQGEIILKYRKLHP 135 (333)
T ss_pred HHHHHcCeEEEEeeEEE-c-CCCCceEEEEEEECCCCcEEEEEeeccc
Confidence 99999999998886544 2 233 499999999999999999999996
No 22
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.92 E-value=2.2e-24 Score=147.39 Aligned_cols=109 Identities=34% Similarity=0.479 Sum_probs=93.4
Q ss_pred EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhc-ccCCCChHHHHHHHHHHHcCcEEE
Q 033342 8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKI-AEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
|||++|+++. +|...|++++.+++++|++.|+|||||||+++ +||...+.... .....++..+.++++|++++++|+
T Consensus 1 ~ia~~Q~~~~~~~~~~n~~~i~~~i~~a~~~gadliv~PE~~l-~g~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i~ 79 (261)
T cd07585 1 RIALVQFEARVGDKARNLAVIARWTRKAAAQGAELVCFPEMCI-TGYTHVRALSREAEVPDGPSTQALSDLARRYGLTIL 79 (261)
T ss_pred CEEEEEeecCCCCHHHHHHHHHHHHHHHHHcCCCEEEeccccc-ccccCCcccchhcccCCChHHHHHHHHHHHcCcEEE
Confidence 6999999985 89999999999999999999999999999998 88876543222 233457789999999999999999
Q ss_pred eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|+.++ .++++||++++|+|+|. ++.|+|.||
T Consensus 80 ~G~~~~---~~~~~yNs~~vi~~~g~-i~~y~K~~l 111 (261)
T cd07585 80 AGLIEK---AGDRPYNTYLVCLPDGL-VHRYRKLHL 111 (261)
T ss_pred Eecccc---CCCceeEEEEEECCCCc-EeEEeeecC
Confidence 997644 56689999999999998 589999997
No 23
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=99.92 E-value=2.3e-24 Score=147.14 Aligned_cols=108 Identities=18% Similarity=0.282 Sum_probs=87.2
Q ss_pred cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcE
Q 033342 5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMW 83 (121)
Q Consensus 5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 83 (121)
++||||++|+++. +|.+.|++++.++++++ .|+|||||||+++ +||...+... .. ..++..+.++++|+++++.
T Consensus 2 ~~mkia~~Q~~~~~~d~~~Nl~~~~~~i~~a--~gadLivfPE~~~-~Gy~~~~~~~-~~-~~~~~~~~l~~~A~~~~~~ 76 (256)
T PRK10438 2 SGLKITLLQQPLVWMDGPANLRHFDRQLEGI--TGRDVIVLPEMFT-TGFAMEAAAS-SL-PQDDVVAWMTAKAQQTNAL 76 (256)
T ss_pred CCCEEEEEEecCccCCHHHHHHHHHHHHHhc--cCCCEEEeCCccc-CCCcccchhh-cc-ccchHHHHHHHHHHHcCeE
Confidence 3599999999975 89999999999999975 6999999999998 8887543211 11 2356889999999999974
Q ss_pred EEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 84 LSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 84 ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++|++.+. .++++|||+++|+|+|. ++.|+|+||
T Consensus 77 -i~g~~~~~--~~~~~~Nsa~vi~~~G~-~~~y~K~hL 110 (256)
T PRK10438 77 -IAGSVALQ--TESGAVNRFLLVEPGGT-VHFYDKRHL 110 (256)
T ss_pred -EEEEEEEe--cCCCeEEEEEEEcCCCC-EEEEeeeec
Confidence 56766543 44578999999999998 479999997
No 24
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=99.92 E-value=2.9e-24 Score=149.26 Aligned_cols=113 Identities=24% Similarity=0.296 Sum_probs=90.4
Q ss_pred EEEEEEecc-ccCH-------HHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhh--c--------------c-
Q 033342 8 RVAVAQMTS-INDL-------AANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIK--I--------------A- 62 (121)
Q Consensus 8 ~ia~vQ~~~-~~~~-------~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~--~--------------~- 62 (121)
|+|+||..+ +.+. +.|++++.+++++|++.|+|||||||+++ +||...+... . +
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~Nl~~i~~~i~~A~~~gadLIVfPE~~l-tGy~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (299)
T cd07567 2 IAAVVEHHPILSPDPDALQIMEKNLDIYEEIIKSAAKQGADIIVFPEDGL-TGFIFTRFVIYPFLEDVPDPEVNWNPCLD 80 (299)
T ss_pred EEEEEEEEeeccCCccHHHHHHHHHHHHHHHHHHHHHcCCCEEEcccccc-CCCCCCccccCchhccccccccccccccc
Confidence 789999986 3444 89999999999999999999999999999 8887543221 1 0
Q ss_pred --cCCCChHHHHHHHHHHHcCcEEEeccceeec---------CCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 63 --EPLDGPIMQGYCSLARESSMWLSLGGFQEKG---------SDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 63 --~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~---------~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
...+++.++.++++|++++++|++|...+.. ..++++||++++|+|+|++++.|+|+||
T Consensus 81 ~~~~~~~~~~~~l~~lAr~~~i~Iv~G~~e~~~~~~~~~~~~~~~~~~yNsa~vi~~~G~iv~~YrK~hL 150 (299)
T cd07567 81 PDRFDYTEVLQRLSCAARENSIYVVANLGEKQPCDSSDPHCPPDGRYQYNTNVVFDRDGTLIARYRKYNL 150 (299)
T ss_pred ccccCchHHHHHHHHHHHHhCeEEEeccccccccccccccCCCCCCceeEEEEEEcCCCCccceEeeccc
Confidence 1134578999999999999999999655421 1223699999999999999999999997
No 25
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=99.92 E-value=3.9e-24 Score=145.66 Aligned_cols=108 Identities=23% Similarity=0.394 Sum_probs=91.9
Q ss_pred cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
||||++|+++. +|++.|++++.+++++|++ |+|||||||+++ +||...+. ..++...+...+.++++|+++++.++
T Consensus 1 mkia~~Q~~~~~~d~~~N~~~~~~~i~~a~~-gadlvvfPE~~l-~g~~~~~~-~~~~~~~~~~~~~l~~la~~~~i~i~ 77 (252)
T cd07575 1 LKIALIQTDLVWEDPEANLAHFEEKIEQLKE-KTDLIVLPEMFT-TGFSMNAE-ALAEPMNGPTLQWMKAQAKKKGAAIT 77 (252)
T ss_pred CEEEEEEeecCcCCHHHHHHHHHHHHHHhhc-CCCEEEeCCcCc-CCCCccHH-HhhcccCChHHHHHHHHHHHCCeEEE
Confidence 79999999986 8999999999999999987 999999999999 88865433 34455567889999999999999887
Q ss_pred eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+| ++++ +++++||++++++|+|++ ..|+|+||
T Consensus 78 ~~-~~~~--~~~~~yNs~~~i~~~G~i-~~y~K~~l 109 (252)
T cd07575 78 GS-LIIK--EGGKYYNRLYFVTPDGEV-YHYDKRHL 109 (252)
T ss_pred EE-EEEc--cCCceEEEEEEECCCCCE-EEEeeeec
Confidence 55 5543 557899999999999987 59999986
No 26
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.92 E-value=6e-24 Score=145.78 Aligned_cols=109 Identities=38% Similarity=0.499 Sum_probs=91.1
Q ss_pred EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhh---hccc-CCCChHHHHHHHHHHHcCc
Q 033342 8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNI---KIAE-PLDGPIMQGYCSLARESSM 82 (121)
Q Consensus 8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~---~~~~-~~~~~~~~~l~~~a~~~~~ 82 (121)
|||++|+++. ++.++|++++.+++++|+++|+|||||||+++ +||...+.. .+.+ ..+++..+.++++|+++++
T Consensus 1 ria~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (268)
T cd07580 1 RVACVQFDPRVGDLDANLARSIELIREAADAGANLVVLPELAN-TGYVFESRDEAFALAEEVPDGASTRAWAELAAELGL 79 (268)
T ss_pred CEEEEEccCccCcHHHHHHHHHHHHHHHHHcCCCEEEcCCccc-ccCCCCCHHHHHHhhccCCCCchHHHHHHHHHHcCc
Confidence 6999999986 89999999999999999999999999999999 777654321 1222 2346688999999999999
Q ss_pred EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|++|...+ .++++||++++++++|. ++.|+|+||
T Consensus 80 ~i~~G~~~~---~~~~~yNs~~vi~~~g~-~~~y~K~~l 114 (268)
T cd07580 80 YIVAGFAER---DGDRLYNSAVLVGPDGV-IGTYRKAHL 114 (268)
T ss_pred EEEeecccc---cCCceEEEEEEECCCCc-EEEEEEecC
Confidence 999995443 55689999999999995 699999997
No 27
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.92 E-value=9.3e-24 Score=146.67 Aligned_cols=113 Identities=21% Similarity=0.277 Sum_probs=93.3
Q ss_pred EEEEEEecc-----ccCHHHHHHHHHHHHHHHHH-----CCCcEEEccCCccCCCCCCchh------hhcccCCCChHHH
Q 033342 8 RVAVAQMTS-----INDLAANFATCSRLVKEAAS-----AGAKLLCFPENFSYVGDKDADN------IKIAEPLDGPIMQ 71 (121)
Q Consensus 8 ~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~~-----~~~dlvv~PE~~~~~~~~~~~~------~~~~~~~~~~~~~ 71 (121)
+++.+|+.. .+|+..|++++.+++++|++ +++|||||||+++ +||...+. .+.++..+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~d~~~Nl~~~~~~i~~A~~~~~~~~gadlivfPE~~l-tGy~~~~~~~~~~~~~~a~~~~~~~~~ 80 (294)
T cd07582 2 TALALQPTCEAAEDRADILANIDRINEQIDAAVGFSGPGLPVRLVVLPEYAL-QGFPMGEPREVWQFDKAAIDIPGPETE 80 (294)
T ss_pred eeEEEecccccccChhhHHHHHHHHHHHHHHHHHhcccCCCceEEEcCcccc-ccCCcccchhhhhhhhccccCCCHHHH
Confidence 567889864 37999999999999999986 4799999999999 88875432 2334556788999
Q ss_pred HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
.|+++|++++++|++|++++....++++||++++|+|+|++++.|+|+||
T Consensus 81 ~l~~~A~~~~i~iv~G~~e~~~~~~~~~yNsa~~i~~~G~i~~~yrK~hl 130 (294)
T cd07582 81 ALGEKAKELNVYIAANAYERDPDFPGLYFNTAFIIDPSGEIILRYRKMNS 130 (294)
T ss_pred HHHHHHHHcCEEEEEeeeeecCCCCCcEEEEEEEECCCCcEEEEEeeecc
Confidence 99999999999999997654211236899999999999999999999996
No 28
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=99.92 E-value=8.4e-24 Score=143.43 Aligned_cols=109 Identities=39% Similarity=0.624 Sum_probs=94.1
Q ss_pred EEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhh---cccCCCChHHHHHHHHHHHcCcEE
Q 033342 9 VAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIK---IAEPLDGPIMQGYCSLARESSMWL 84 (121)
Q Consensus 9 ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~a~~~~~~i 84 (121)
||++|+++. .+.++|++++.+++++|.++++|||||||+++ +|+....... ..........+.++++|+++++++
T Consensus 1 ia~~Q~~~~~~~~~~n~~~~~~~i~~a~~~g~dlvvfPE~~l-~g~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~i 79 (253)
T cd07197 1 IAAVQLAPKIGDVEANLAKALRLIKEAAEQGADLIVLPELFL-TGYSFESAKEDLDLAEELDGPTLEALAELAKELGIYI 79 (253)
T ss_pred CEEEEccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCccc-cCCccccchhhhhhcccCCchHHHHHHHHHHHhCeEE
Confidence 689999987 99999999999999999999999999999998 7876543322 233456788999999999999999
Q ss_pred EeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 85 SLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 85 i~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++|+..+ .++++||++++++|+|++++.|+|.||
T Consensus 80 i~G~~~~---~~~~~~N~~~~i~~~G~i~~~~~K~~l 113 (253)
T cd07197 80 VAGIAEK---DGDKLYNTAVVIDPDGEIIGKYRKIHL 113 (253)
T ss_pred EeeeEEc---cCCceEEEEEEECCCCeEEEEEEEeec
Confidence 9997644 556899999999999998999999986
No 29
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=99.91 E-value=1.3e-23 Score=148.43 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=94.8
Q ss_pred cccEEEEEEecc-----ccCHHHHHHHHHHHHHHHH--HCCCcEEEccCCccCCCCC--CchhhhcccCCCChHHHHHHH
Q 033342 5 HSVRVAVAQMTS-----INDLAANFATCSRLVKEAA--SAGAKLLCFPENFSYVGDK--DADNIKIAEPLDGPIMQGYCS 75 (121)
Q Consensus 5 ~~~~ia~vQ~~~-----~~~~~~n~~~~~~~~~~a~--~~~~dlvv~PE~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ 75 (121)
..++||++|.+. ..|...|++++.+.+++|+ ..++|||||||+++ +||. ..++.+.+...+++..+.+++
T Consensus 11 ~~l~va~vQ~~~p~~~~~~di~~Nl~~i~~~i~~a~~~~~gadLVVfPE~~l-~G~~y~~~~~~~~a~~i~g~~~~~l~~ 89 (345)
T PRK13286 11 DTVGVAVVNYKMPRLHTKAEVLENARKIADMIVGMKQGLPGMDLVIFPEYST-HGIMYDRQEMYETASTIPGEETAIFAE 89 (345)
T ss_pred CceEEEEEEcCCCccCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEcCCccc-cCCCcChHHHHHhcccCCCHHHHHHHH
Confidence 569999999984 3678999999999999886 45899999999999 8844 333445566677888999999
Q ss_pred HHHHcCcEEEeccceeecC--CCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 76 LARESSMWLSLGGFQEKGS--DDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 76 ~a~~~~~~ii~G~~~~~~~--~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|+++++++++|...+... .++++||++++|+|+|++++.|+|+|+
T Consensus 90 ~A~~~~i~~v~~i~ge~~~~~~~~~~yNta~vi~~~G~i~~~YrK~~p 137 (345)
T PRK13286 90 ACRKAKVWGVFSLTGERHEEHPRKAPYNTLILINDKGEIVQKYRKIMP 137 (345)
T ss_pred HHHHcCEEEEEeccccccccCCCCceeEEEEEECCCCeEEEEEEeecC
Confidence 9999999998876533221 245699999999999999999999986
No 30
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=99.91 E-value=1.8e-23 Score=143.92 Aligned_cols=111 Identities=37% Similarity=0.506 Sum_probs=94.8
Q ss_pred ccEEEEEEecc-ccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch---hhhcccCCCChHHHHHHHHHHHcC
Q 033342 6 SVRVAVAQMTS-INDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD---NIKIAEPLDGPIMQGYCSLARESS 81 (121)
Q Consensus 6 ~~~ia~vQ~~~-~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~a~~~~ 81 (121)
.+|||++|++. ..|...|++++.+++++|++.++|||||||+++ +||...+ .........++..+.++++++++.
T Consensus 2 ~~rvA~~Q~~~~~~d~~~N~~~~~~~i~~a~~~ga~LvvfPEl~~-tgy~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 80 (274)
T COG0388 2 MMRVAAAQMAPKAGDPAENLARILRLIREAAARGADLVVFPELFL-TGYPCEDDLFLEEAAAEAGEETLEFLAALAEEGG 80 (274)
T ss_pred ceEEEEEEecCCCCCHHHHHHHHHHHHHHHHHcCCCEEECCcccc-cCCCcccHHHHHhhhhccCChHHHHHHHHHHhCC
Confidence 58999999997 599999999999999999999999999999999 8988764 333334456789999999999777
Q ss_pred cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+.++.|+.+. .. ..||++++++++|++++.|+|+||
T Consensus 81 ~~ivg~~~~~---~~-~~~~~~~~i~~~G~ii~~y~K~hl 116 (274)
T COG0388 81 VIIVGGPLPE---RE-KLYNNAALIDPDGEILGKYRKLHL 116 (274)
T ss_pred eEEEEeeeec---cc-cceeeEEEEcCCCcEEeEEeeecC
Confidence 8777776555 22 789999999999999999999997
No 31
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.91 E-value=6e-24 Score=146.53 Aligned_cols=111 Identities=31% Similarity=0.388 Sum_probs=91.1
Q ss_pred cEEEEEEeccc--cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCC---CCCchh------hhcccCCCChHHHHHHH
Q 033342 7 VRVAVAQMTSI--NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVG---DKDADN------IKIAEPLDGPIMQGYCS 75 (121)
Q Consensus 7 ~~ia~vQ~~~~--~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~---~~~~~~------~~~~~~~~~~~~~~l~~ 75 (121)
||||++|+++. .|.+.|++++++++++|++.|+|||||||+++ +| +...+. ........++..+.+++
T Consensus 1 m~va~~Q~~~~~~~~~~~n~~~i~~~i~~A~~~gadlivfPE~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (280)
T cd07574 1 VRVAAAQYPLRRYASFEEFAAKVEYWVAEAAGYGADLLVFPEYFT-MELLSLLPEAIDGLDEAIRALAALTPDYVALFSE 79 (280)
T ss_pred CeeEEEEccCcCCCCHHHHHHHHHHHHHHHHHcCCCEEECchHhH-HHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999974 79999999999999999999999999999997 44 222111 11112234678899999
Q ss_pred HHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 76 LARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 76 ~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|++++++|++|+++.. .++++||++++++|+|.+ +.|+|.||
T Consensus 80 ~a~~~~i~iv~G~~~~~--~~~~~yNs~~~i~~~G~v-~~y~K~~l 122 (280)
T cd07574 80 LARKYGINIIAGSMPVR--EDGRLYNRAYLFGPDGTI-GHQDKLHM 122 (280)
T ss_pred HHHHhCCEEEecceEEc--CCCCeEEEEEEECCCCCE-EEEeeecc
Confidence 99999999999976653 567899999999999988 99999996
No 32
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.91 E-value=2.4e-23 Score=142.19 Aligned_cols=106 Identities=28% Similarity=0.460 Sum_probs=89.5
Q ss_pred EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch---hhhcccCC-CChHHHHHHHHHHHcCc
Q 033342 8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD---NIKIAEPL-DGPIMQGYCSLARESSM 82 (121)
Q Consensus 8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~---~~~~~~~~-~~~~~~~l~~~a~~~~~ 82 (121)
|||++|+++. +|.+.|++++.+++++|. +|||||||+++ +||.... ...+++.. +++.++.++++|+++++
T Consensus 1 kia~~Q~~~~~~d~~~N~~~~~~~i~~a~---adlvvfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i 76 (259)
T cd07577 1 KVGYVQFNPKFGEVEKNLKKVESLIKGVE---ADLIVLPELFN-TGYAFTSKEEVASLAESIPDGPTTRFLQELARETGA 76 (259)
T ss_pred CEEEEEccCccCCHHHHHHHHHHHHHHhC---CCEEEcccccc-cCCCcCCHHHHHHhhcccCCChHHHHHHHHHHHhCc
Confidence 6999999985 899999999999999873 99999999999 8887532 22334433 56889999999999999
Q ss_pred EEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 83 WLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 83 ~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|++|+... .++++||++++++|+| +++.|+|+||
T Consensus 77 ~ii~G~~~~---~~~~~yNs~~vi~~~G-i~~~y~K~~l 111 (259)
T cd07577 77 YIVAGLPER---DGDKFYNSAVVVGPEG-YIGIYRKTHL 111 (259)
T ss_pred EEEecceec---cCCceEEEEEEECCCc-cEeeEeeccC
Confidence 999996544 5678999999999999 8899999997
No 33
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=99.90 E-value=2.5e-23 Score=142.13 Aligned_cols=109 Identities=24% Similarity=0.318 Sum_probs=84.6
Q ss_pred EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhccc--CCCChHHHHHHHHHHHcCcEE
Q 033342 8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE--PLDGPIMQGYCSLARESSMWL 84 (121)
Q Consensus 8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~~~i 84 (121)
|||++|+++. +|.++|++++.+++++|++.|+|||||||+++ +||...+...... ....+.++.+.+.++++++++
T Consensus 1 ria~~Q~~~~~~d~~~N~~~~~~~i~~A~~~gadlvvfPE~~l-~gy~~~~~~~~~~~~~~~~~~~~~la~~~~~~~i~i 79 (261)
T cd07570 1 RIALAQLNPTVGDLEGNAEKILEAIREAKAQGADLVVFPELSL-TGYPPEDLLLRPDFLEAAEEALEELAAATADLDIAV 79 (261)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHHcCCCEEEccchhc-cCCChHHHhhCHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 6999999975 89999999999999999999999999999999 8887543211110 011233444444445569999
Q ss_pred EeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 85 SLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 85 i~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++|+..+ .++++||+++++ ++|++++.|+|+||
T Consensus 80 i~G~~~~---~~~~~yNs~~~i-~~G~i~~~y~K~~l 112 (261)
T cd07570 80 VVGLPLR---HDGKLYNAAAVL-QNGKILGVVPKQLL 112 (261)
T ss_pred EEeceEe---cCCCEEEEEEEE-eCCEEEEEEECccC
Confidence 9997654 557899999999 59999999999996
No 34
>PRK02628 nadE NAD synthetase; Reviewed
Probab=99.90 E-value=2.5e-23 Score=157.70 Aligned_cols=112 Identities=26% Similarity=0.185 Sum_probs=94.1
Q ss_pred cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhccc--CCCChHHHHHHHHHHHcC
Q 033342 5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE--PLDGPIMQGYCSLARESS 81 (121)
Q Consensus 5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~a~~~~ 81 (121)
..||||++|+++. +|++.|++++.+.+++|+++|||||||||+++ +||.+.+...... ....+.++.|+++|++++
T Consensus 11 ~~mrIAlaQ~~~~~gD~~~Nl~~i~~~i~~A~~~gadLvVfPEL~l-tGY~~~dl~~~~~~~~~~~~~l~~L~~~a~~~~ 89 (679)
T PRK02628 11 GFVRVAAATPKVRVADPAFNAARILALARRAADDGVALAVFPELSL-SGYSCDDLFLQDTLLDAVEDALATLVEASADLD 89 (679)
T ss_pred CcEEEEEEeCCcccCCHHHHHHHHHHHHHHHHHCCCeEEEcccccc-cCCCcchhhccHHHHHhhHHHHHHHHHHHhhcC
Confidence 4699999999986 99999999999999999999999999999999 8998765421111 122367888999999999
Q ss_pred cEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 82 MWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 82 ~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+.|++|...+ .++++||++++++ +|++++.|+|+||
T Consensus 90 i~ivvG~p~~---~~~~lyNsa~vi~-~G~il~~y~K~hL 125 (679)
T PRK02628 90 PLLVVGAPLR---VRHRLYNCAVVIH-RGRILGVVPKSYL 125 (679)
T ss_pred EEEEEeeEEE---ECCEEEEEEEEEc-CCEEEEEeccccC
Confidence 9999995433 4568999999998 7999999999997
No 35
>cd07571 ALP_N-acyl_transferase Apolipoprotein N-acyl transferase (class 9 nitrilases). ALP N-acyl transferase (Lnt), is an essential membrane-bound enzyme in gram-negative bacteria, which catalyzes the N-acylation of apolipoproteins, the final step in lipoprotein maturation. This is a reverse amidase (i.e. condensation) reaction. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 9.
Probab=99.90 E-value=3.2e-23 Score=142.48 Aligned_cols=104 Identities=27% Similarity=0.306 Sum_probs=89.8
Q ss_pred cEEEEEEeccc-c------CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH
Q 033342 7 VRVAVAQMTSI-N------DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE 79 (121)
Q Consensus 7 ~~ia~vQ~~~~-~------~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 79 (121)
+||+++|+++. + |.++|++++.+++++|+++++|+|||||+++ +||. ..+++..+.++++|++
T Consensus 1 ~~ia~~Q~~~~~~~~~~~~d~~~nl~~~~~~i~~a~~~ga~lvvfPE~~l-~g~~---------~~~~~~~~~l~~~ak~ 70 (270)
T cd07571 1 LRVALVQGNIPQDEKWDPEQRQATLDRYLDLTRELADEKPDLVVWPETAL-PFDL---------QRDPDALARLARAARA 70 (270)
T ss_pred CeEEEEeCCCCcccccCHHHHHHHHHHHHHHHhhcccCCCCEEEecCCcC-Cccc---------ccCHHHHHHHHHHHHh
Confidence 58999999975 3 7899999999999999999999999999998 7764 1356788999999999
Q ss_pred cCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 80 SSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 80 ~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+++++++|...+. ..++++||++++++|+|+++++|+|+||
T Consensus 71 ~~i~ii~G~~~~~-~~~~~~~Ns~~~i~~~G~i~~~y~K~~L 111 (270)
T cd07571 71 VGAPLLTGAPRRE-PGGGRYYNSALLLDPGGGILGRYDKHHL 111 (270)
T ss_pred cCCeEEEeeeeec-cCCCceEEEEEEECCCCCCcCcEeeeec
Confidence 9999999976552 1225899999999999998999999986
No 36
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=99.90 E-value=5.7e-23 Score=140.93 Aligned_cols=108 Identities=28% Similarity=0.432 Sum_probs=87.4
Q ss_pred EEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchh-hhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 8 RVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADN-IKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 8 ~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
|||++|++.. +|.+.|++++.+++++|+++|+|||||||+++ +||...+. .+.+.....+.++.+++.++ ++.++
T Consensus 1 kia~~q~~~~~~~~~~n~~~~~~~i~~A~~~ga~liv~PE~~~-~g~~~~~~~~~~~~~~~~~~~~~l~~~a~--~~~ii 77 (269)
T cd07586 1 RVAIAQIDPVLGDVEENLEKHLEIIETARERGADLVVFPELSL-TGYNLGDLVYEVAMHADDPRLQALAEASG--GICVV 77 (269)
T ss_pred CEEEEecCCccCcHHHHHHHHHHHHHHHHHcCCCEEEecchhc-cCCCchhhhhhhhcccchHHHHHHHHHcC--CCEEE
Confidence 6999999976 89999999999999999999999999999998 88876532 22333334556666666653 79999
Q ss_pred eccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 86 LGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 86 ~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+|+.... .++++||++++| ++|+++++|+|+||
T Consensus 78 ~G~~~~~--~~~~~yNt~~vi-~~G~i~~~y~K~~l 110 (269)
T cd07586 78 FGFVEEG--RDGRFYNSAAYL-EDGRVVHVHRKVYL 110 (269)
T ss_pred EeCeEEc--CCCcEEEEEEEe-cCCEEEEEEEeEeC
Confidence 9976652 357899999999 79999999999986
No 37
>PLN02339 NAD+ synthase (glutamine-hydrolysing)
Probab=99.89 E-value=6.6e-23 Score=155.54 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=88.6
Q ss_pred cccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHH---HHc
Q 033342 5 HSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLA---RES 80 (121)
Q Consensus 5 ~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a---~~~ 80 (121)
..||||++|++++ +|++.|++++.+.+++|+++|||||||||+++ +||.+.+...... ......+.+.+++ +++
T Consensus 2 ~~mrIAlaQl~~~~gD~~~N~~~I~~~I~~A~~~gAdLvVfPEL~l-TGY~~~Dl~~~~~-~~~~~~~~L~~La~~a~~~ 79 (700)
T PLN02339 2 RLLKVATCNLNQWAMDFDGNLKRIKESIAEAKAAGAVYRVGPELEI-TGYGCEDHFLELD-TVTHSWECLAEILVGDLTD 79 (700)
T ss_pred ceEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEcCCCcc-CCCChHHHhhChh-HHHHHHHHHHHHHhhcccC
Confidence 4799999999987 79999999999999999999999999999999 9998765432121 1122234455555 467
Q ss_pred CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 81 SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 81 ~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++.+++|.... .++++||+++++. +|++++.|+|.||
T Consensus 80 ~i~vvvG~p~~---~~~~lYN~a~vi~-~GkIlg~y~K~hL 116 (700)
T PLN02339 80 GILCDIGMPVI---HGGVRYNCRVFCL-NRKILLIRPKMWL 116 (700)
T ss_pred CeEEEEeeeEE---ECCeEEEEEEEEe-CCEEEEEEecccC
Confidence 99999995444 4457999999996 7999999999997
No 38
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.89 E-value=4.5e-23 Score=136.19 Aligned_cols=118 Identities=51% Similarity=0.889 Sum_probs=106.5
Q ss_pred CcccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcE
Q 033342 4 AHSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMW 83 (121)
Q Consensus 4 ~~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 83 (121)
....+||++|+....|...|++.+.+++++|+..||++|.|||.|-+.|-.+.+..++++..++++.+.++++|+.+++|
T Consensus 13 ~~~~~vAv~Qm~S~~Dl~kNl~~~keLi~eA~~k~A~~iflPE~~dFi~~n~~esi~Lae~l~~k~m~~y~elar~~nIw 92 (295)
T KOG0807|consen 13 SKLKRVAVAQMTSSNDLTKNLATCKELISEAAQKGAKLIFLPEAFDFIGQNPLESIELAEPLDGKFMEQYRELARSHNIW 92 (295)
T ss_pred cccceeEEEeeccchHHHHHHHHHHHHHHHHHHcCCCEEEcchhhhhhcCCcccceecccccChHHHHHHHHHHHhcCee
Confidence 34489999999999999999999999999999999999999999987788777777888888999999999999999999
Q ss_pred EEeccceeecC-CCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 84 LSLGGFQEKGS-DDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 84 ii~G~~~~~~~-~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+-+|...++.+ .+.+++|+.++|+.+|+++..|.|.||
T Consensus 93 lSlgg~~~r~~~~~~k~~N~hl~id~~G~i~a~Y~KlHL 131 (295)
T KOG0807|consen 93 LSLGGHHERSDDGNQKLRNTHLLIDSKGEIRAEYQKLHL 131 (295)
T ss_pred EEeccccCCCccccceeeeeEEEEcCCchHHHHHhhhce
Confidence 98887776432 346899999999999999999999997
No 39
>PRK13981 NAD synthetase; Provisional
Probab=99.88 E-value=2.1e-22 Score=149.67 Aligned_cols=109 Identities=33% Similarity=0.404 Sum_probs=89.4
Q ss_pred cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH--cCcE
Q 033342 7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE--SSMW 83 (121)
Q Consensus 7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~--~~~~ 83 (121)
||||++|+++. +|++.|++++.+.+++|+++|+|||||||+++ +||...+..... .......+.+..+++. +++.
T Consensus 1 mkIAl~Q~~~~~gd~~~N~~~i~~~i~~A~~~gadLIVfPEl~l-tGy~~~d~~~~~-~~~~~~~~~l~~La~~~~~~i~ 78 (540)
T PRK13981 1 LRIALAQLNPTVGDIAGNAAKILAAAAEAADAGADLLLFPELFL-SGYPPEDLLLRP-AFLAACEAALERLAAATAGGPA 78 (540)
T ss_pred CEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEECcchhh-cCCChhhhhcCH-HHHHHHHHHHHHHHHhcCCCCE
Confidence 79999999985 89999999999999999999999999999999 898765432111 1122345667777777 7999
Q ss_pred EEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 84 LSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 84 ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+++|...+ .++++||++++|+ +|++++.|+|+||
T Consensus 79 ii~G~~~~---~~~~~yNsa~vi~-~G~i~~~y~K~~L 112 (540)
T PRK13981 79 VLVGHPWR---EGGKLYNAAALLD-GGEVLATYRKQDL 112 (540)
T ss_pred EEEeCcEe---eCCcEEEEEEEEE-CCeEEEEEeeeeC
Confidence 99997544 5568999999998 7999999999996
No 40
>TIGR00546 lnt apolipoprotein N-acyltransferase. This enzyme transfers the acyl group to lipoproteins in the lgt/lsp/lnt system which is found broadly in bacteria but not in archaea. This model represents one component of the "lipoprotein lgt/lsp/lnt system" genome property.
Probab=99.85 E-value=4.9e-21 Score=137.65 Aligned_cols=107 Identities=20% Similarity=0.229 Sum_probs=85.9
Q ss_pred cccEEEEEEecccc-------CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHH
Q 033342 5 HSVRVAVAQMTSIN-------DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLA 77 (121)
Q Consensus 5 ~~~~ia~vQ~~~~~-------~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 77 (121)
.++||+++|+|+.. +..+|++++.++++++.+ ++|+|||||+++ +++..+ .+++..+.++++|
T Consensus 158 ~~~~ValvQ~n~~~~~k~~~~~~~~~~~~~~~~~~~a~~-~~dlVv~PE~a~-~~~~~~--------~~~~~~~~l~~~a 227 (391)
T TIGR00546 158 PTLNVALVQPNIPQDLKFDSEGLEAILEILTSLTKQAVE-KPDLVVWPETAF-PFDLEN--------SPQKLADRLKLLV 227 (391)
T ss_pred CcceEEEEcCCCCcccccChhhHHHHHHHHHHHHhccCC-CCCEEEcCcccc-ccchhh--------CcHHHHHHHHHHH
Confidence 46999999999853 367899999999998866 899999999998 554321 1223678899999
Q ss_pred HHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 78 RESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 78 ~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+++++.+++|........++++|||+++++|+|+++++|+|+||
T Consensus 228 ~~~~~~ii~G~~~~~~~~~~~~yNsa~~~~~~G~~~~~Y~K~~L 271 (391)
T TIGR00546 228 LSKGIPILIGAPDAVPGGPYHYYNSAYLVDPGGEVVQRYDKVKL 271 (391)
T ss_pred HhCCCEEEEecccccCCCCCceeeEEEEECCCCCccccccceec
Confidence 99999999997654211112799999999999999999999997
No 41
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.82 E-value=4.5e-20 Score=126.11 Aligned_cols=116 Identities=26% Similarity=0.302 Sum_probs=101.0
Q ss_pred CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCC-chhhhcccCC-----CChHHHHHHHH
Q 033342 4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKD-ADNIKIAEPL-----DGPIMQGYCSL 76 (121)
Q Consensus 4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~~~ 76 (121)
...+++|++|.... .+..+|++..+..+++|++.+++||||||.++ .||.. +...++++.. .++.++.++++
T Consensus 11 ~~~~~~a~vq~~~~l~~~~~Ni~~~~~~i~~aa~~g~~iIv~PE~~~-~gy~~~~sf~py~E~i~~~~~~~ps~~~ls~v 89 (298)
T KOG0806|consen 11 LPNATEALVSLEEALLLMNENIDILEKAVKEAAKQGAKIIVFPEDGL-YGYNFTESFYPYLEDIPDPGCRDPSRQGLSEV 89 (298)
T ss_pred ccccceeeeecccchhhhhhhHHHHHHHHHHHHhcCCeEEEChhhcc-ccccccccccchhhhCCCcccCChhHHHhHHH
Confidence 35689999999987 69999999999999999999999999999999 77776 5444555543 36899999999
Q ss_pred HHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 77 ARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 77 a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
|++++++++.|++++.. .+++.||++.+++++|+.++.|+|.||
T Consensus 90 a~~~~~~~i~g~i~~~~-~~~k~yns~~~~~~~g~l~~~yrk~hl 133 (298)
T KOG0806|consen 90 AERLSCYIIGGSIEEEA-LGDKLYNSCADSSCPGDGLAKYRKNHL 133 (298)
T ss_pred HhhceEEEecCcchhhc-ccccccCcccccCCCcchhheeeeeEE
Confidence 99999999999988853 467999999999999999999999986
No 42
>PRK00302 lnt apolipoprotein N-acyltransferase; Reviewed
Probab=99.80 E-value=4.6e-19 Score=131.06 Aligned_cols=106 Identities=25% Similarity=0.240 Sum_probs=83.3
Q ss_pred cccEEEEEEecccc-------CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHH
Q 033342 5 HSVRVAVAQMTSIN-------DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLA 77 (121)
Q Consensus 5 ~~~~ia~vQ~~~~~-------~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a 77 (121)
.++||+++|+|+.. +.++|++++.++++++ .+++|+|||||+++ +++. ...+++..+.+++++
T Consensus 218 ~~~~ValvQ~ni~~~~k~~~~~~~~~l~~~~~~~~~~-~~~~dlvV~PE~a~-p~~~--------~~~~~~~~~~l~~~a 287 (505)
T PRK00302 218 PALKVALVQGNIPQSLKWDPAGLEATLQKYLDLSRPA-LGPADLIIWPETAI-PFLL--------EDLPQAFLKALDDLA 287 (505)
T ss_pred CCcEEEEECCCCChhcccCHHHHHHHHHHHHHHHhcc-cCCCCEEEeCCccc-cccc--------ccccHHHHHHHHHHH
Confidence 46999999999753 4678999999998844 67899999999987 4442 112345677899999
Q ss_pred HHcCcEEEeccceeecCCCC-ceEEEEEEECCCCCEEeeeecCCC
Q 033342 78 RESSMWLSLGGFQEKGSDDA-RLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 78 ~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
+++++.+++|...+....++ ++||++++++| |+++++|+|+||
T Consensus 288 ~~~~~~il~G~~~~~~~~~~~~~yNsa~~i~~-g~~~~~Y~K~~L 331 (505)
T PRK00302 288 REKGSALITGAPRAENKQGRYDYYNSIYVLGP-YGILNRYDKHHL 331 (505)
T ss_pred HhCCCEEEEecccccCCCCCCceeeEEEEECC-CCCcCccccccc
Confidence 99999999997654211123 69999999998 778899999997
No 43
>KOG0805 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.78 E-value=3.5e-18 Score=113.74 Aligned_cols=113 Identities=27% Similarity=0.457 Sum_probs=96.8
Q ss_pred CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCc----------------h---hhhccc
Q 033342 4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDA----------------D---NIKIAE 63 (121)
Q Consensus 4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~----------------~---~~~~~~ 63 (121)
++..||+++|.... .|....++++++.+.+|+..|++||||||.++ .||+.- + +..-+.
T Consensus 15 ~s~~~v~ivQ~~t~~~dtpaTL~K~~~~~~Eaa~~Ga~LV~fPEAfi-GGYPrg~~Fg~~~G~r~~eGR~ef~kY~a~AI 93 (337)
T KOG0805|consen 15 SSIVRVTIVQASTVYNDTPATLDKAEKYIVEAASKGAELVLFPEAFI-GGYPRGFRFGLAVGVRNEEGRDEFRKYHASAI 93 (337)
T ss_pred ccceEEEEEEcccCCCCCHHHHHHHHHHHHHHhcCCceEEEeehHhc-cCCCCcceeeEEEeecchhhhHHHHHHHHHhh
Confidence 56799999999864 78888999999999999999999999999999 777642 1 111223
Q ss_pred CCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCC
Q 033342 64 PLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIH 120 (121)
Q Consensus 64 ~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~h 120 (121)
...++..+.+.++|+++++.+++|.+++ ++..+|-++++++|.|..++.++|+.
T Consensus 94 ev~gpEv~~l~~la~~~~v~lv~G~iEr---eg~TLYCt~~f~~p~g~~lGKHRKlm 147 (337)
T KOG0805|consen 94 EVPGPEVERLAELAKKNNVYLVMGAIER---EGYTLYCTVLFFSPQGQFLGKHRKLM 147 (337)
T ss_pred cCCChHHHHHHHHhhcCCeEEEEEEEec---cccEEEEEEEEECCCccccccccccc
Confidence 3567889999999999999999998776 77889999999999999999999975
No 44
>PRK12291 apolipoprotein N-acyltransferase; Reviewed
Probab=99.76 E-value=5e-18 Score=122.88 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=76.6
Q ss_pred cEEEEEEeccccC-------HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH
Q 033342 7 VRVAVAQMTSIND-------LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE 79 (121)
Q Consensus 7 ~~ia~vQ~~~~~~-------~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~ 79 (121)
.+|++||+|+.++ .+++++++.+++++|.+.++|+|||||++. +.+.. ..+...+.+++.+
T Consensus 195 ~~V~lVQ~ni~q~~Kw~~~~~~~~l~~~~~l~~~a~~~~~dLVVwPEta~-p~~~~---------~~~~~~~~l~~~~-- 262 (418)
T PRK12291 195 VNIELVNTNIPQDLKWDKENLKSIINENLKEIDKAIDEKKDLIVLPETAF-PLALN---------NSPILLDKLKELS-- 262 (418)
T ss_pred CEEEEEeCCCCcccccChhhHHHHHHHHHHHHHHHhccCCCEEEeCCccc-ccchh---------hCHHHHHHHHHhc--
Confidence 4999999998643 367899999999998888999999999997 43321 1234667777764
Q ss_pred cCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 80 SSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 80 ~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
.++.+++|+... +++++|||++++++ |+ ++.|+|+||
T Consensus 263 ~~~~ii~G~~~~---~~~~~yNS~~vi~~-G~-~~~Y~K~hL 299 (418)
T PRK12291 263 HKITIITGALRV---EDGHIYNSTYIFSK-GN-VQIADKVIL 299 (418)
T ss_pred cCCcEEEeeeec---cCCceEEEEEEECC-CC-cceecccCC
Confidence 578899997654 44579999999985 87 689999997
No 45
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=99.62 E-value=8.3e-15 Score=98.55 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=92.2
Q ss_pred cccEEEEEEeccc--------cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCC-CCC-Cc--hhhhcccCCC-ChHHH
Q 033342 5 HSVRVAVAQMTSI--------NDLAANFATCSRLVKEAASAGAKLLCFPENFSYV-GDK-DA--DNIKIAEPLD-GPIMQ 71 (121)
Q Consensus 5 ~~~~ia~vQ~~~~--------~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~-~~~-~~--~~~~~~~~~~-~~~~~ 71 (121)
+.+||+++|..+. .+.....+++...++.|+..|+.+|+|.|.|..+ .+. .+ .+.+++++.+ ++..+
T Consensus 72 r~vrvgliqn~i~lpttapv~eq~~aih~r~kaiieaaa~agvniiclqeawtmpfafctrerlpwtefaesv~~gptt~ 151 (387)
T KOG0808|consen 72 RVVRVGLIQNSIALPTTAPVSEQTRAIHDRLKAIIEAAAVAGVNIICLQEAWTMPFAFCTRERLPWTEFAESVDTGPTTK 151 (387)
T ss_pred cEEEEeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccEEEeehhhcCchhhhccccCchhhhccccccCchHH
Confidence 4589999998863 2345667888888998999999999999999722 222 12 2566777754 89999
Q ss_pred HHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 72 GYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 72 ~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
.++++|+++++.|+-..+++....+..++|++++|+.+|.++++.+|-|.
T Consensus 152 flqklakkhdmvivspilerd~ehgdvlwntavvisn~g~vigk~rknhi 201 (387)
T KOG0808|consen 152 FLQKLAKKHDMVIVSPILERDIEHGDVLWNTAVVISNNGNVIGKHRKNHI 201 (387)
T ss_pred HHHHHHhhCCeEEEehhhhcccccCceeeeeeEEEccCCceecccccccC
Confidence 99999999999988775555333455789999999999999999999885
No 46
>COG0815 Lnt Apolipoprotein N-acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.61 E-value=3.8e-15 Score=110.16 Aligned_cols=106 Identities=20% Similarity=0.161 Sum_probs=72.3
Q ss_pred cccEEEEEEeccccC----HHHHHHHHHH---HHHHHH--HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHH
Q 033342 5 HSVRVAVAQMTSIND----LAANFATCSR---LVKEAA--SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCS 75 (121)
Q Consensus 5 ~~~~ia~vQ~~~~~~----~~~n~~~~~~---~~~~a~--~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (121)
..++|+++|.|++++ .+.-.+.+.. ....+. ..++|+|||||+++ + ...........++.+
T Consensus 226 ~~~~V~lvQ~nI~q~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~dlVIwPEtA~-p---------~~~~~~~~~~~~~~~ 295 (518)
T COG0815 226 PTLTVALVQGNIPQDLKWDADALARLIAGYLEEEFLAAVDKQKPDLVVWPETAL-P---------FDLTRHPDALARLAE 295 (518)
T ss_pred CceEEEEecCCCcccccCCHHHHHHHHHhhhhccccccccCCCCCEEEcccccc-c---------cchhhcchHHHHHHH
Confidence 459999999998633 3322222222 333222 37899999999998 2 111122233667888
Q ss_pred HHHHcCcEEEeccceeecCCCC--ceEEEEEEECCCCCEEeeeecCCC
Q 033342 76 LARESSMWLSLGGFQEKGSDDA--RLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 76 ~a~~~~~~ii~G~~~~~~~~~~--~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
.+++.++.+++| .....+.++ ++|||+++++++|+++++|||.||
T Consensus 296 ~~~~~~~~~iiG-~~~~~~~~~~~~yyNSv~~~~~~~~~~~~ydK~~L 342 (518)
T COG0815 296 ALQRVGAPLLIG-TDVDGPAPGGGIYYNSVLVLDPGGEGVYRYDKVHL 342 (518)
T ss_pred HHHhcCCcEEEe-ccccccCCCCcceeeEEEEecCCCCccccccceee
Confidence 888888999999 333211233 589999999999899999999997
No 47
>PRK13825 conjugal transfer protein TraB; Provisional
Probab=99.52 E-value=1.8e-13 Score=98.28 Aligned_cols=99 Identities=17% Similarity=0.066 Sum_probs=71.2
Q ss_pred ccEEEEEEeccccC-----HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc
Q 033342 6 SVRVAVAQMTSIND-----LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES 80 (121)
Q Consensus 6 ~~~ia~vQ~~~~~~-----~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 80 (121)
+.++-.++.++.++ ..+..+++.+.+++|.++++|+|||||+++ +++... .. +.+.+.++++
T Consensus 185 p~~w~~v~t~~~~~~~~~~~~~~~~~~~~~v~~A~~~g~dlIVlPEta~-~~~~~~---------~~---~~~~~~l~~~ 251 (388)
T PRK13825 185 PAGWVGVDTQLGRSLGRDASLERRRELIATVRAAAAAGARVVVLPESAL-GFWTPT---------TE---RLWRESLRGS 251 (388)
T ss_pred CCCeEEEECCcccccCchhhHHHHHHHHHHHHhhcccCCCEEEccCccc-cccccc---------cc---HHHHHHHHhC
Confidence 45677777776421 124455667777777888999999999998 555321 01 1235556889
Q ss_pred CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 81 SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 81 ~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++.+++|+..+ +++++||++++++++|.. ..|+|+||
T Consensus 252 ~i~II~G~~~~---~~~~~yNsa~v~~~~G~~-~~Y~K~~L 288 (388)
T PRK13825 252 DVTVIAGAAVV---DPGGYDNVLVAISAGGGR-ILYRERMP 288 (388)
T ss_pred CCeEEEEeeec---CCCCceEEEEEEeCCCCe-eeEeeeeC
Confidence 99999997655 456799999999998865 59999886
No 48
>KOG2303 consensus Predicted NAD synthase, contains CN hydrolase domain [Coenzyme transport and metabolism; General function prediction only]
Probab=98.86 E-value=3.4e-09 Score=77.30 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=84.9
Q ss_pred CcccEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccC--CCChHHHHHHHHHHHc
Q 033342 4 AHSVRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEP--LDGPIMQGYCSLARES 80 (121)
Q Consensus 4 ~~~~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~a~~~ 80 (121)
++.++||..++|-| .|++.|.++|.+-+++|++.||.+-+-||+-+ +||.+++.....++ .+.+.+..+.+--.-.
T Consensus 2 ~r~vtvAtc~lNqWAlDFegN~~rI~~Si~eAk~~gA~~RlGPELEi-~GYgC~DHf~E~Dt~~HswE~l~~l~~~~~~~ 80 (706)
T KOG2303|consen 2 GRKVTVATCTLNQWALDFEGNMQRILKSIEEAKARGARYRLGPELEI-TGYGCEDHFLESDTLLHSWEMLAELVESPVTQ 80 (706)
T ss_pred CceEEEEEechhhhhhhccccHHHHHHHHHHHHhcCCeeecCCceee-cCCChHHhhccchHHHHHHHHHHHHHcCCCCC
Confidence 46799999999988 89999999999999999999999999999999 99998875322222 1222222222211234
Q ss_pred CcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 81 SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 81 ~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++.+.+| ++.. ..+..||+.+++- +|+|+.+..|+-|
T Consensus 81 ~il~diG-mPv~--hr~~ryNCrv~~~-n~kil~IRpKm~l 117 (706)
T KOG2303|consen 81 DILCDIG-MPVM--HRNVRYNCRVLFL-NRKILLIRPKMWL 117 (706)
T ss_pred CeeEecC-Cchh--hhhhhhccceeec-CCeEEEEccccee
Confidence 6778888 5543 5567899999886 8999998888743
No 49
>cd07565 aliphatic_amidase aliphatic amidases (class 2 nitrilases). Aliphatic amidases catalyze the hydrolysis of short-chain aliphatic amides to form ammonia and the corresponding organic acid. This group includes Pseudomonas aeruginosa (Pa) AmiE, the amidase from Geobacillus pallidus RAPc8 (RAPc8 amidase), and Helicobacter pylori (Hp) AmiE and AmiF. PaAimE and HpAmiE hydrolyze various very short aliphatic amides, including propionamide, acetamide and acrylamide. HpAmiF is a formamidase which specifically hydrolyzes formamide. These proteins belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 2. Members of this superfamily generally form homomeric complexes, the basic
Probab=95.06 E-value=0.44 Score=33.38 Aligned_cols=72 Identities=11% Similarity=0.062 Sum_probs=44.5
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA 109 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~ 109 (121)
..+..+.+|||+++.|-.+. ... .......++.-|.+++++++.-...- ...+..++=.+.+++|+
T Consensus 161 ~~r~la~~GAdill~ps~~~-~~~------------~~~w~~~~~aRA~En~~~vv~aN~~G-~~~~~~~~G~S~ivdP~ 226 (291)
T cd07565 161 IARECAYKGAELIIRIQGYM-YPA------------KDQWIITNKANAWCNLMYTASVNLAG-FDGVFSYFGESMIVNFD 226 (291)
T ss_pred HHHHHHHCCCeEEEECCcCC-CCc------------chHHHHHHHHHHHhcCcEEEEecccc-cCCCceeeeeeEEECCC
Confidence 44445568999999997553 111 11233456777889999986443221 11223455678889999
Q ss_pred CCEEee
Q 033342 110 GNIRST 115 (121)
Q Consensus 110 G~i~~~ 115 (121)
|+++..
T Consensus 227 G~ila~ 232 (291)
T cd07565 227 GRTLGE 232 (291)
T ss_pred CCEEEe
Confidence 998754
No 50
>KOG0807 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=94.48 E-value=0.098 Score=35.84 Aligned_cols=73 Identities=15% Similarity=0.226 Sum_probs=49.3
Q ss_pred HHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 35 ASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 35 ~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
.+.||+|+.+|-.|. .-.... -+--.++.-|-+++++++...-.-++++...-|--+++++|-|.+++
T Consensus 183 R~~gA~iLtyPSAFT-~~TG~A-----------HWEiLlRARAietQCYVvaaaQ~G~HneKR~SyGhSMiVDPWGtVva 250 (295)
T KOG0807|consen 183 RKMGAQILTYPSAFT-IKTGEA-----------HWEILLRARAIETQCYVVAAAQVGKHNEKRESYGHSMIVDPWGTVVA 250 (295)
T ss_pred HHcCCcEEeccchhh-hcccHH-----------HHHHHHHHHHhhcceEEEehhhcccccchhhccCcceEEcchhhhhe
Confidence 367999999999886 111111 11234567788999999876433333334456888999999999998
Q ss_pred eeecC
Q 033342 115 TYRKI 119 (121)
Q Consensus 115 ~y~K~ 119 (121)
.+.-.
T Consensus 251 ~~se~ 255 (295)
T KOG0807|consen 251 RCSER 255 (295)
T ss_pred ecCCC
Confidence 87643
No 51
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=93.88 E-value=0.7 Score=31.51 Aligned_cols=75 Identities=15% Similarity=0.116 Sum_probs=41.9
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
.+..+.+|+|+|++|=.+. ...... ........++.-|.+++++++.....-. ..+..+.=.+.+++|+|
T Consensus 149 ~r~l~~~gadlil~p~~~~-~~~~~~--------~~~~~~~~~~~rA~e~~~~vv~~n~~g~-~~~~~~~G~S~i~~p~G 218 (261)
T cd07585 149 VRATALLGAEILFAPHATP-GTTSPK--------GREWWMRWLPARAYDNGVFVAACNGVGR-DGGEVFPGGAMILDPYG 218 (261)
T ss_pred HHHHHHCCCCEEEECCccC-CCCCcc--------hHHHHHHHhHHHHhhcCeEEEEeccccc-CCCceecceEEEECCCC
Confidence 4555578999999995443 111000 1112233456677889998864422211 11112334568889999
Q ss_pred CEEee
Q 033342 111 NIRST 115 (121)
Q Consensus 111 ~i~~~ 115 (121)
+++..
T Consensus 219 ~v~~~ 223 (261)
T cd07585 219 RVLAE 223 (261)
T ss_pred CEEec
Confidence 88753
No 52
>cd07586 nitrilase_8 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=93.72 E-value=0.84 Score=31.26 Aligned_cols=77 Identities=13% Similarity=0.074 Sum_probs=44.6
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i 112 (121)
.....|+|+|+.|=.+...+ ... ...............|.+++++++.-...- ...+..++-.+.+++|+|++
T Consensus 154 ~~~~~ga~lil~ps~~~~~~-~~~-----~~~~~~~~~~~~~~rA~e~~~~vv~an~~G-~~~~~~~~G~S~ii~p~G~i 226 (269)
T cd07586 154 LLALDGADVIFIPANSPARG-VGG-----DFDNEENWETLLKFYAMMNGVYVVFANRVG-VEDGVYFWGGSRVVDPDGEV 226 (269)
T ss_pred HHHHCCCCEEEEeCCCcccc-Ccc-----ccchhHHHHHHHHHHHHHhCCeEEEEeeec-CcCCceEeCCcEEECCCCCE
Confidence 34578999999996654111 000 000011234556777889999886554322 11223455567889999999
Q ss_pred Eeee
Q 033342 113 RSTY 116 (121)
Q Consensus 113 ~~~y 116 (121)
+...
T Consensus 227 l~~~ 230 (269)
T cd07586 227 VAEA 230 (269)
T ss_pred EEec
Confidence 7543
No 53
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=93.66 E-value=1.3 Score=29.95 Aligned_cols=71 Identities=15% Similarity=0.104 Sum_probs=41.5
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
.+.....|||+|+.|=.+. ..+. ......++..|.+++++++.....- ...+..++=.+.+++|+|
T Consensus 151 ~~~~~~~gadii~~p~~~~-~~~~------------~~~~~~~~~rA~en~~~vv~an~~G-~~~~~~~~G~S~i~~p~G 216 (254)
T cd07576 151 VRALALAGADLVLVPTALM-EPYG------------FVARTLVPARAFENQIFVAYANRCG-AEDGLTYVGLSSIAGPDG 216 (254)
T ss_pred HHHHHHCCCCEEEECCccC-CCcc------------hhhhhhhHHHHHhCCCEEEEEcccC-CCCCceeeeeeEEECCCC
Confidence 3444568999999985443 1111 1123345667889999986543221 112223445578889999
Q ss_pred CEEee
Q 033342 111 NIRST 115 (121)
Q Consensus 111 ~i~~~ 115 (121)
+++..
T Consensus 217 ~il~~ 221 (254)
T cd07576 217 TVLAR 221 (254)
T ss_pred CEeEe
Confidence 98643
No 54
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=93.41 E-value=0.56 Score=32.01 Aligned_cols=72 Identities=17% Similarity=0.239 Sum_probs=40.9
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCc-eEEEEEEECC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAR-LCNTHVLLDD 108 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~-~~Ns~~~i~~ 108 (121)
..+.++.+|+|+|++|=.+. .... ........+.-|.+++++++.....-. ..++. ++=.+.+++|
T Consensus 161 ~~r~~~~~gadli~~p~~~~-~~~~-----------~~~~~~~~~~rA~e~~~~vv~~n~~G~-~~~~~~~~G~S~i~~p 227 (265)
T cd07572 161 LARALARQGADILTVPAAFT-MTTG-----------PAHWELLLRARAIENQCYVVAAAQAGD-HEAGRETYGHSMIVDP 227 (265)
T ss_pred HHHHHHHCCCCEEEECCCCC-CCcc-----------hHHHHHHHHHHHHhcCCEEEEEccccc-CCCCCeecceeEEECC
Confidence 44556678999999995432 1111 111223345667889998865532211 11222 2335788899
Q ss_pred CCCEEe
Q 033342 109 AGNIRS 114 (121)
Q Consensus 109 ~G~i~~ 114 (121)
+|+++.
T Consensus 228 ~G~il~ 233 (265)
T cd07572 228 WGEVLA 233 (265)
T ss_pred CcHHHh
Confidence 998763
No 55
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=93.39 E-value=1.3 Score=30.11 Aligned_cols=71 Identities=10% Similarity=0.117 Sum_probs=40.6
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceE-EEEEEECC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLC-NTHVLLDD 108 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~-Ns~~~i~~ 108 (121)
..+.+...|+|+++.|=.+. .. .........+.-|.+++++++.....- ..++..+ =.+.+++|
T Consensus 154 ~~r~~~~~gadll~~ps~~~-~~------------~~~~~~~~~~~rA~En~~~vv~~n~~g--~~~~~~~~G~S~ii~p 218 (258)
T cd07584 154 VARILTLKGAEVIFCPSAWR-EQ------------DADIWDINLPARALENTVFVAAVNRVG--NEGDLVLFGKSKILNP 218 (258)
T ss_pred HHHHHHHCCCcEEEECCccC-CC------------CchHHHHHHHHHHHhCCcEEEEECccc--cCCCceecceeEEECC
Confidence 34555678999999984332 11 011122234556789999987422111 1222233 46788999
Q ss_pred CCCEEee
Q 033342 109 AGNIRST 115 (121)
Q Consensus 109 ~G~i~~~ 115 (121)
+|+++..
T Consensus 219 ~G~il~~ 225 (258)
T cd07584 219 RGQVLAE 225 (258)
T ss_pred CCceeee
Confidence 9998753
No 56
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=93.38 E-value=0.47 Score=32.52 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=37.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 19 DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 19 ~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+.....+.+.+..+...+.|..+++|||..- .... .-.++..-.-.+|.+.+++|+.
T Consensus 120 ~~~~~~~~l~~~~~~l~~~g~sv~IFPEGTR-s~~g----------~l~~Fk~Ga~~lA~~~~~PIvP 176 (245)
T PRK15018 120 NRTKAHGTIAEVVNHFKKRRISIWMFPEGTR-SRGR----------GLLPFKTGAFHAAIAAGVPIIP 176 (245)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEECCccC-CCCC----------CCCCccHHHHHHHHHcCCCEEE
Confidence 4455566666666666677889999999985 2111 1223556667778888888754
No 57
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=93.01 E-value=1.2 Score=30.01 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=44.4
Q ss_pred HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342 32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN 111 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~ 111 (121)
+.+...|+|+|+.|=...... ...........|.+++++++.....-. ..+..++-.+.+++|+|+
T Consensus 153 ~~~~~~g~dli~~ps~~~~~~-------------~~~~~~~~~~~A~e~~~~vv~~n~~G~-~~~~~~~G~S~i~~p~G~ 218 (253)
T cd07197 153 RELALKGADIILVPAAWPTAR-------------REHWELLLRARAIENGVYVVAANRVGE-EGGLEFAGGSMIVDPDGE 218 (253)
T ss_pred HHHHHCCCcEEEECCcCCCcc-------------hHHHHHHHHHHHHHhCCeEEEecCCCC-CCCccccceeEEECCCCc
Confidence 344577999999998765111 123445567788899998865533221 123345566788999998
Q ss_pred EEee
Q 033342 112 IRST 115 (121)
Q Consensus 112 i~~~ 115 (121)
++..
T Consensus 219 ~~~~ 222 (253)
T cd07197 219 VLAE 222 (253)
T ss_pred eeee
Confidence 8653
No 58
>cd07567 biotinidase_like biotinidase and vanins (class 4 nitrilases). These secondary amidases participate in vitamin recycling. Biotinidase (EC 3.5.1.12) has both a hydrolase and a transferase activity. It hydrolyzes free biocytin or small biotinyl-peptides produced during the proteolytic degradation of biotin-dependent carboxylases, to release free biotin (vitamin H), and it can transfer biotin to acceptor molecules such as histones. Biotinidase deficiency in humans is an autosomal recessive disorder characterized by neurological and cutaneous symptoms. This subgroup includes the three human vanins, vanin1-3. Vanins are ectoenzymes, Vanin-1, and -2 are membrane associated, vanin-3 is secreted. They are pantotheinases (EC 3.5.1.92, pantetheine hydrolase), which convert pantetheine, to pantothenic acid (vitamin B5) and cysteamine (2-aminoethanethiol, a potent anti-oxidant). They are potential targets for therapeutic intervention in inflammatory disorders. Vanin-1 deficient mice lacking
Probab=92.79 E-value=0.99 Score=31.93 Aligned_cols=71 Identities=13% Similarity=0.066 Sum_probs=43.6
Q ss_pred HHHHHHHC-CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECC
Q 033342 30 LVKEAASA-GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDD 108 (121)
Q Consensus 30 ~~~~a~~~-~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~ 108 (121)
..+..+.+ |+|+++.|=.|. ..... ......++.-|.+++++++.-... +...++-.+.+++|
T Consensus 188 ~~r~la~~~GAdlil~paaw~-~~~~~-----------~~w~~l~~arA~eN~~~vi~~N~~----g~~~~~G~S~iv~P 251 (299)
T cd07567 188 PALELVKKLGVDDIVFPTAWF-SELPF-----------LTAVQIQQAWAYANGVNLLAANYN----NPSAGMTGSGIYAG 251 (299)
T ss_pred HHHHHHHhCCCCEEEECCccC-CCCCc-----------hhHHHHHHHHHHHcCceEEEecCC----CCcCccccceEEcC
Confidence 34444456 999999995443 11110 122345677889999998654322 21234466788999
Q ss_pred C-CCEEeee
Q 033342 109 A-GNIRSTY 116 (121)
Q Consensus 109 ~-G~i~~~y 116 (121)
+ |+++...
T Consensus 252 ~~G~v~a~~ 260 (299)
T cd07567 252 RSGALVYHY 260 (299)
T ss_pred CCCcEEEEe
Confidence 9 9998654
No 59
>cd07570 GAT_Gln-NAD-synth Glutamine aminotransferase (GAT, glutaminase) domain of glutamine-dependent NAD synthetases (class 7 and 8 nitrilases). Glutamine-dependent NAD synthetases are bifunctional enzymes, which have an N-terminal GAT domain and a C-terminal NAD+ synthetase domain. The GAT domain is a glutaminase (EC 3.5.1.2) which hydrolyses L-glutamine to L-glutamate and ammonia. The ammonia is used by the NAD+ synthetase domain in the ATP-dependent amidation of nicotinic acid adenine dinucleotide. Glutamine aminotransferases are categorized depending on their active site residues into different unrelated classes. This class of GAT domain belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this sub
Probab=92.49 E-value=0.91 Score=30.94 Aligned_cols=72 Identities=17% Similarity=0.064 Sum_probs=41.7
Q ss_pred HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342 32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN 111 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~ 111 (121)
+..+..|+|+++.|=.+. .... ........++..|.+++++++.-...- ...+..+.=.+.+++|+|+
T Consensus 156 r~~~~~ga~ll~~ps~~~-~~~~----------~~~~~~~~~~~rA~en~~~vv~~n~~g-~~~~~~~~G~S~ii~p~G~ 223 (261)
T cd07570 156 AELALAGADLILNLSASP-FHLG----------KQDYRRELVSSRSARTGLPYVYVNQVG-GQDDLVFDGGSFIADNDGE 223 (261)
T ss_pred HHHHHcCCcEEEEeCCCc-cccC----------cHHHHHHHHHHHHHHhCCcEEEEeCCC-CCceEEEECceEEEcCCCC
Confidence 344567999999995542 1110 011123446778889999886554322 1111223445788999999
Q ss_pred EEee
Q 033342 112 IRST 115 (121)
Q Consensus 112 i~~~ 115 (121)
++..
T Consensus 224 vl~~ 227 (261)
T cd07570 224 LLAE 227 (261)
T ss_pred EEEe
Confidence 8753
No 60
>TIGR03381 agmatine_aguB N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one.
Probab=92.46 E-value=2.3 Score=29.21 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=43.3
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeec---CCCCceEEEEEEEC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKG---SDDARLCNTHVLLD 107 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~---~~~~~~~Ns~~~i~ 107 (121)
.+..+.+|+|+|+.|=.+....+.. ...........+..-|.+++++++.....-.. ..+..++=.+.+++
T Consensus 159 ~r~~a~~ga~lil~ps~~~~~~~~~------~~~~~~~~~~~~~~rA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~ 232 (279)
T TIGR03381 159 ARAMALMGAEVLFYPTAIGSEPHDP------DLDSRDHWQRVMQGHAAANLVPVVAANRIGTEVGDGGEQTFYGSSFIAD 232 (279)
T ss_pred HHHHHHcCCCEEEecCccCCCCccc------ccccHHHHHHHHHHHHHhCCCeEEEEecccccCCCCCcceEeeeEEEEC
Confidence 3555578999999986543111110 00011223344555688899988644322110 01224556788999
Q ss_pred CCCCEEee
Q 033342 108 DAGNIRST 115 (121)
Q Consensus 108 ~~G~i~~~ 115 (121)
|+|+++..
T Consensus 233 p~G~il~~ 240 (279)
T TIGR03381 233 HTGELVAE 240 (279)
T ss_pred CCCcEeec
Confidence 99998753
No 61
>PRK13286 amiE acylamide amidohydrolase; Provisional
Probab=92.30 E-value=2.3 Score=30.76 Aligned_cols=72 Identities=8% Similarity=0.086 Sum_probs=44.3
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA 109 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~ 109 (121)
..+..+.+|||+|+-|-.+. . . ........++..|.+++++++.-...-. .....++=.+.+++|+
T Consensus 174 ~~R~la~~GAelii~psa~~-~--~----------~~~~~~~~~rarA~eN~~yVv~aN~~G~-~~~~~~~G~S~Ivdp~ 239 (345)
T PRK13286 174 IWRDCAMKGAELIVRCQGYM-Y--P----------AKEQQVLVAKAMAWANNCYVAVANAAGF-DGVYSYFGHSAIIGFD 239 (345)
T ss_pred HHHHHHHcCCeEEEEccccC-C--C----------chHHHHHHHHHHHHHCCCEEEEEecccc-cCCceeeeeEEEECCC
Confidence 44555678999999885443 1 1 0112334466778899999865533321 1222455668899999
Q ss_pred CCEEee
Q 033342 110 GNIRST 115 (121)
Q Consensus 110 G~i~~~ 115 (121)
|+++..
T Consensus 240 G~vla~ 245 (345)
T PRK13286 240 GRTLGE 245 (345)
T ss_pred CcEEEe
Confidence 998754
No 62
>PLN02798 nitrilase
Probab=91.98 E-value=1.7 Score=30.29 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHHHHH-HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECC
Q 033342 30 LVKEAA-SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDD 108 (121)
Q Consensus 30 ~~~~a~-~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~ 108 (121)
..+.++ ..|+|+|+.|=.+. .... .......++.-|.+++++++.-...-....+..++=.+.+++|
T Consensus 171 ~~r~~a~~~Gadlil~ps~~~-~~~~-----------~~~~~~~~~~rAien~~~vv~an~~G~~~~~~~~~G~S~ii~p 238 (286)
T PLN02798 171 LYQQLRFEHGAQVLLVPSAFT-KPTG-----------EAHWEVLLRARAIETQCYVIAAAQAGKHNEKRESYGHALIIDP 238 (286)
T ss_pred HHHHHHHhCCCcEEEECCcCC-CCCc-----------HHHHHHHHHHHHHHhCCEEEEecccCcCCCCceeeeeeEEECC
Confidence 345455 78999999996543 1100 0112233456677888988653221111112234456788899
Q ss_pred CCCEEee
Q 033342 109 AGNIRST 115 (121)
Q Consensus 109 ~G~i~~~ 115 (121)
+|+++..
T Consensus 239 ~G~il~~ 245 (286)
T PLN02798 239 WGTVVAR 245 (286)
T ss_pred Cccchhh
Confidence 9988643
No 63
>cd07580 nitrilase_2 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=91.95 E-value=2.9 Score=28.67 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCC-ceEEEEEEECCCC
Q 033342 32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDA-RLCNTHVLLDDAG 110 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~-~~~Ns~~~i~~~G 110 (121)
+..+.+|+|+|+.|=.+. ...... ..............|.+++++++.-...-. +++ .++=.+.+++|+|
T Consensus 154 r~~~~~ga~li~~ps~~~-~~~~~~------~~~~~~~~~~~~arA~en~~~vv~~n~~G~--~~~~~~~G~S~ii~p~G 224 (268)
T cd07580 154 RLLALQGADIVCVPTNWV-PMPRPP------EGGPPMANILAMAAAHSNGLFIACADRVGT--ERGQPFIGQSLIVGPDG 224 (268)
T ss_pred HHHHHcCCCEEEEcCccc-ccCCcc------cccCcHHHHhhHHHHhhCCcEEEEEeeeee--ccCceEeeeeEEECCCC
Confidence 445578999999987664 111100 000111122345567789998865432221 222 3445679999999
Q ss_pred CEEee
Q 033342 111 NIRST 115 (121)
Q Consensus 111 ~i~~~ 115 (121)
+++..
T Consensus 225 ~~~~~ 229 (268)
T cd07580 225 WPLAG 229 (268)
T ss_pred Ceeee
Confidence 98754
No 64
>cd07587 ML_beta-AS mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This subgroup includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=91.67 E-value=1.6 Score=31.72 Aligned_cols=71 Identities=11% Similarity=-0.019 Sum_probs=41.3
Q ss_pred HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecC---------------CC
Q 033342 32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS---------------DD 96 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~---------------~~ 96 (121)
+..+.+|+|||++|=.+. +... ...+...++.-|.+++++++.....-... ..
T Consensus 235 r~la~~GAdiil~Psa~~--~~~~----------~~~w~~~~rarAieN~~fVv~~NrvG~e~~~~~~~~~~g~~~~~~~ 302 (363)
T cd07587 235 LMYGLNGAEIVFNPSATV--GALS----------EPMWPIEARNAAIANSYFTVGINRVGTEVFPNEFTSGDGKPAHKDF 302 (363)
T ss_pred HHHHHcCCcEEEECCCcC--CCCc----------hHHHHHHHHHHHHhcCcEEEEecccccccccccccccccccccccc
Confidence 334567999999995543 1110 01223445667889999886432111000 01
Q ss_pred CceEEEEEEECCCCCEEe
Q 033342 97 ARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 97 ~~~~Ns~~~i~~~G~i~~ 114 (121)
..++-.+.+++|+|+++.
T Consensus 303 ~~f~G~S~Ii~P~G~il~ 320 (363)
T cd07587 303 GHFYGSSYVAAPDGSRTP 320 (363)
T ss_pred ccccceeEEECCCCCCcc
Confidence 246678999999998764
No 65
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=91.38 E-value=2 Score=29.14 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=41.5
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA 109 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~ 109 (121)
..+....+|+|+++.|=.+. ... ..........-|.+++++++.-...-. ..+..++=.+.+++|+
T Consensus 151 ~~r~~~~~ga~ll~~ps~~~--~~~-----------~~~~~~~~~~rA~en~~~vv~~n~~G~-~~~~~~~G~S~ii~p~ 216 (253)
T cd07583 151 LFRKLALEGAEILFVPAEWP--AAR-----------IEHWRTLLRARAIENQAFVVACNRVGT-DGGNEFGGHSMVIDPW 216 (253)
T ss_pred HHHHHHHcCCcEEEECCCCC--CCc-----------hHHHHHHHHHHHHHhCCEEEEEcCccc-CCCceecceeEEECCC
Confidence 44555678999999985432 111 111222345667888988864322211 1222344556788999
Q ss_pred CCEEee
Q 033342 110 GNIRST 115 (121)
Q Consensus 110 G~i~~~ 115 (121)
|+++..
T Consensus 217 G~il~~ 222 (253)
T cd07583 217 GEVLAE 222 (253)
T ss_pred chhhee
Confidence 998754
No 66
>cd07577 Ph0642_like Pyrococcus horikoshii Ph0642 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup of the nitrilase superfamily. This superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. Pyrococcus horikoshii Ph0642 is a hypothetical protein belonging to this subgroup. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). This subgroup was classified as belonging to class 13, which represents proteins that at the time were difficult to place in a distinct similarity group. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=91.34 E-value=2.9 Score=28.49 Aligned_cols=69 Identities=13% Similarity=0.165 Sum_probs=39.5
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeec---CCCCceEEEEEEEC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKG---SDDARLCNTHVLLD 107 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~---~~~~~~~Ns~~~i~ 107 (121)
.+..+.+|||+|+.|=.+. .. .....++.-|.+++++++.....-.. ..+..+.-.+.+++
T Consensus 150 ~r~~~~~Gadli~~ps~~~-~~---------------~~~~~~~~rA~en~~~vv~~n~~G~~~~~~~~~~~~G~S~i~~ 213 (259)
T cd07577 150 ARTLALKGADIIAHPANLV-LP---------------YCPKAMPIRALENRVFTITANRIGTEERGGETLRFIGKSQITS 213 (259)
T ss_pred HHHHHHcCCCEEEECCccC-Cc---------------hhhhhhhHhhhhcCceEEEEecCcccCCCCCCceEeeeeEEEC
Confidence 3445578999999996543 10 01123456678889988643211100 01112345678999
Q ss_pred CCCCEEee
Q 033342 108 DAGNIRST 115 (121)
Q Consensus 108 ~~G~i~~~ 115 (121)
|+|+++..
T Consensus 214 p~G~i~~~ 221 (259)
T cd07577 214 PKGEVLAR 221 (259)
T ss_pred CCCCEEee
Confidence 99998753
No 67
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=90.94 E-value=3.9 Score=28.23 Aligned_cols=82 Identities=11% Similarity=0.051 Sum_probs=43.3
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecC---CCCceEEEEEEE
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS---DDARLCNTHVLL 106 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~---~~~~~~Ns~~~i 106 (121)
..+.....|+|++++|=.+...+... ..-..........++..|.+++++++.-...-... .+..++=.+.++
T Consensus 159 ~~r~~~~~gadlil~ps~~~~~~~~~----~~~~~~~~~~~~~~~~rA~e~~~~vv~an~~G~~~~~~~~~~~~G~S~i~ 234 (284)
T cd07573 159 AARLMALQGAEILFYPTAIGSEPQEP----PEGLDQRDAWQRVQRGHAIANGVPVAAVNRVGVEGDPGSGITFYGSSFIA 234 (284)
T ss_pred HHHHHHHCCCCEEEecCcccCCCCCc----cccCCchHHHHHHHHHHHHHcCceEEEeccccccCCCCCCceeeceeEEE
Confidence 34555678999999995542111100 00000112223445566888999886443221000 122344567889
Q ss_pred CCCCCEEee
Q 033342 107 DDAGNIRST 115 (121)
Q Consensus 107 ~~~G~i~~~ 115 (121)
+|+|+++..
T Consensus 235 ~p~G~i~~~ 243 (284)
T cd07573 235 DPFGEILAQ 243 (284)
T ss_pred CCCCCeeec
Confidence 999998753
No 68
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=90.93 E-value=1.5 Score=26.29 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 25 ATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 25 ~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
....+.+.++.++|..+++|||... . ... ...++...+..+|.+.++.|+.
T Consensus 76 ~~~~~~~~~~l~~g~~v~ifPeG~~-~-~~~---------~~~~f~~g~~~la~~~~~pvvp 126 (130)
T TIGR00530 76 ATALKAAIEVLKQGRSIGVFPEGTR-S-RGR---------DILPFKKGAFHIAIKAGVPILP 126 (130)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCC-C-CCC---------CCCCcchhHHHHHHHcCCCEEe
Confidence 3444455556678889999999975 2 111 1123345667788888888853
No 69
>cd07568 ML_beta-AS_like mammalian-like beta-alanine synthase (beta-AS) and similar proteins (class 5 nitrilases). This family includes mammalian-like beta-AS (EC 3.5.1.6, also known as beta-ureidopropionase or N-carbamoyl-beta-alanine amidohydrolase). This enzyme catalyzes the third and final step in the catabolic pyrimidine catabolic pathway responsible for the degradation of uracil and thymine, the hydrolysis of N-carbamyl-beta-alanine and N-carbamyl-beta-aminoisobutyrate to the beta-amino acids, beta-alanine and beta-aminoisobutyrate respectively. This family belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 5. Members of this superfamily generally form homomeric
Probab=90.71 E-value=4.1 Score=28.20 Aligned_cols=74 Identities=9% Similarity=0.038 Sum_probs=40.6
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCC--CCceEEEEEEEC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSD--DARLCNTHVLLD 107 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~--~~~~~Ns~~~i~ 107 (121)
..+..+..|+|+++.|=.+. .+... .......+.-|.+++++++.-...-.... ...++-.+.+++
T Consensus 170 ~~r~la~~Ga~li~~ps~~~-~~~~~-----------~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~~~~G~S~ii~ 237 (287)
T cd07568 170 GWRALGLNGAEIVFNPSATV-AGLSE-----------YLWKLEQPAAAVANGYFVGAINRVGTEAPWNIGEFYGSSYFVD 237 (287)
T ss_pred HHHHHHHCCCeEEEECCcCC-CCCch-----------hhhHHHHHHHHHHCCcEEEEeccccccCCCccceEeceeEEEC
Confidence 34455578999999985443 22110 01112335557788888763211110000 124556778999
Q ss_pred CCCCEEee
Q 033342 108 DAGNIRST 115 (121)
Q Consensus 108 ~~G~i~~~ 115 (121)
|+|+++..
T Consensus 238 p~G~il~~ 245 (287)
T cd07568 238 PRGQFVAS 245 (287)
T ss_pred CCceEEEe
Confidence 99998754
No 70
>PRK13981 NAD synthetase; Provisional
Probab=90.30 E-value=2.1 Score=32.69 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=43.0
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA 109 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~ 109 (121)
..+..+..|+|+|+.|=.+. +... ........++..|.+++++++.-...-. ..+..+.-.+.+++|+
T Consensus 153 ~~r~la~~Gadlil~psa~~---~~~~--------~~~~~~~~~~~rA~En~~~vv~aN~vG~-~~~~~f~G~S~i~dp~ 220 (540)
T PRK13981 153 PAETLAEAGAELLLVPNASP---YHRG--------KPDLREAVLRARVRETGLPLVYLNQVGG-QDELVFDGASFVLNAD 220 (540)
T ss_pred HHHHHHHCCCcEEEEcCCCc---ccCC--------cHHHHHHHHHHHHHHhCCeEEEEecccC-CCceEEeCceEEECCC
Confidence 34445578999999994332 1100 0112234567788999998865432211 1222334567889999
Q ss_pred CCEEee
Q 033342 110 GNIRST 115 (121)
Q Consensus 110 G~i~~~ 115 (121)
|+++..
T Consensus 221 G~il~~ 226 (540)
T PRK13981 221 GELAAR 226 (540)
T ss_pred CCEeee
Confidence 998753
No 71
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=90.28 E-value=1.2 Score=26.77 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 24 FATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 24 ~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.....+.+.+..+.+--+++|||....... . . .+...-...++.+.+++|+
T Consensus 77 ~~~~~~~~~~~l~~~~~i~ifPEG~~~~~~------~----~-~~~~~G~~~~a~~~~~~iv 127 (132)
T PF01553_consen 77 NRKALKDIKEILRKGGSIVIFPEGTRSRSG------E----L-LPFKKGAFHIALKAKVPIV 127 (132)
T ss_dssp HHHHHHHHHHHHHC---EEE-TT-S---B------------B-----HHHHHHHHHH-----
T ss_pred cchhHHHHHHHhhhcceeeecCCccCcCCC------c----c-CCccHHHHHHHHHcCCccc
Confidence 334444444455555559999999752111 0 1 2344556666777777664
No 72
>COG0388 Predicted amidohydrolase [General function prediction only]
Probab=90.22 E-value=3.1 Score=28.66 Aligned_cols=68 Identities=16% Similarity=0.212 Sum_probs=44.4
Q ss_pred HHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCC-CceEEEEEEECCCCCEE
Q 033342 35 ASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDD-ARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 35 ~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~-~~~~Ns~~~i~~~G~i~ 113 (121)
+..|+++|+.|=.+. .... .......+..-|-+++++++.....-. ..+ ..++-.+++++|+|+++
T Consensus 163 a~~Gaeii~~p~a~~-~~~~-----------~~~w~~l~~arA~en~~~vv~~n~~g~-~~~~~~~~G~S~i~~p~G~v~ 229 (274)
T COG0388 163 ALGGAELLLVPAAWP-AERG-----------LDHWEVLLRARAIENQVYVLAANRAGF-DGAGLEFCGHSAIIDPDGEVL 229 (274)
T ss_pred HhcCCeEEEEcCCCC-Cccc-----------HHHHHHHHHHHhhhcCceEEEecccCC-CCCccEEecceEEECCCccEE
Confidence 455899999999886 2221 112223366677889999976643331 122 46788899999999876
Q ss_pred ee
Q 033342 114 ST 115 (121)
Q Consensus 114 ~~ 115 (121)
+.
T Consensus 230 ~~ 231 (274)
T COG0388 230 AE 231 (274)
T ss_pred ee
Confidence 53
No 73
>PLN02747 N-carbamolyputrescine amidase
Probab=89.02 E-value=6 Score=27.60 Aligned_cols=80 Identities=10% Similarity=0.051 Sum_probs=43.6
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeec-----CC--CCceEEE
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKG-----SD--DARLCNT 102 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~-----~~--~~~~~Ns 102 (121)
..+..+.+|+|+|+.|=.+....+.. ... ........++..|.+++++++.-...-.. .. ...++=.
T Consensus 164 ~~r~~~~~Ga~lil~ps~~~~~~~~~-----~~~-~~~~~~~~~~~rA~en~~~vv~~N~~G~~~~~~~~g~~~~~~~G~ 237 (296)
T PLN02747 164 AARAMVLQGAEVLLYPTAIGSEPQDP-----GLD-SRDHWKRVMQGHAGANLVPLVASNRIGTEILETEHGPSKITFYGG 237 (296)
T ss_pred HHHHHHHCCCCEEEEeCccCCCCccc-----ccc-hHHHHHHHHHHHHHHcCCeEEEEecccccccccccCCcCceEeee
Confidence 34555678999999987653111110 000 01223344567788889887554221100 01 1234456
Q ss_pred EEEECCCCCEEee
Q 033342 103 HVLLDDAGNIRST 115 (121)
Q Consensus 103 ~~~i~~~G~i~~~ 115 (121)
+.+++|+|+++..
T Consensus 238 S~i~~p~G~vl~~ 250 (296)
T PLN02747 238 SFIAGPTGEIVAE 250 (296)
T ss_pred eEEECCCCCEeec
Confidence 7888999998754
No 74
>cd07990 LPLAT_LCLAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LCLAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as Lysocardiolipin acyltransferase 1 (LCLAT1) or 1-acyl-sn-glycerol-3-phosphate acyltransferase and similar proteins.
Probab=88.88 E-value=1.4 Score=28.78 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHC--CCcEEEccCCcc
Q 033342 23 NFATCSRLVKEAASA--GAKLLCFPENFS 49 (121)
Q Consensus 23 n~~~~~~~~~~a~~~--~~dlvv~PE~~~ 49 (121)
..+.+.+.++...+. +..+++|||..-
T Consensus 87 d~~~i~~~~~~l~~~~~~~~lviFPEGTr 115 (193)
T cd07990 87 DEKTIKRQLKRLKDSPEPFWLLIFPEGTR 115 (193)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEeCcccC
Confidence 344555555554443 788999999986
No 75
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=88.53 E-value=5.7 Score=27.04 Aligned_cols=69 Identities=14% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA 109 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~ 109 (121)
..+..+.+|+|+++.|=.+. .+... . ..+..-|.+++++++.....-. ..+..++=.+.+++|+
T Consensus 154 ~~r~~~~~ga~ll~~ps~~~-~~~~~-----------~---~~~~~rA~en~~~vv~an~~G~-~~~~~~~G~S~ii~p~ 217 (258)
T cd07578 154 TARLLALGGADVICHISNWL-AERTP-----------A---PYWINRAFENGCYLIESNRWGL-ERGVQFSGGSCIIEPD 217 (258)
T ss_pred HHHHHHHcCCCEEEEcCCCC-CCCCc-----------c---hHHHHhhhcCCeEEEEecceec-cCCcceeeEEEEECCC
Confidence 34445578999999986543 11110 0 1123456788888765533211 1222345567899999
Q ss_pred CCEEe
Q 033342 110 GNIRS 114 (121)
Q Consensus 110 G~i~~ 114 (121)
|+++.
T Consensus 218 G~il~ 222 (258)
T cd07578 218 GTIQA 222 (258)
T ss_pred CcEee
Confidence 98864
No 76
>PLN00202 beta-ureidopropionase
Probab=88.49 E-value=4.6 Score=29.89 Aligned_cols=71 Identities=11% Similarity=0.036 Sum_probs=41.5
Q ss_pred HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecC--------CC-------
Q 033342 32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS--------DD------- 96 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~--------~~------- 96 (121)
+..+..|+|+|+.|=.+. +... ...+...++.-|.+++++++.-...-... ++
T Consensus 256 r~la~~GAdiIl~Psa~~--~~~~----------~~~w~~~~raRAiEN~~fvv~aNrvG~~~~~~~~~~~~g~~~~~~~ 323 (405)
T PLN00202 256 LAFGLNGAEIVFNPSATV--GDLS----------EPMWPIEARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHKDF 323 (405)
T ss_pred HHHHHCCCcEEEECCCCC--CccC----------HHHHHHHHHHHHHhcCCEEEEecccccccccccccccccccccccc
Confidence 333567999999995543 1110 01223445677888898885443221000 00
Q ss_pred CceEEEEEEECCCCCEEe
Q 033342 97 ARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 97 ~~~~Ns~~~i~~~G~i~~ 114 (121)
..++=.+.+++|+|+++.
T Consensus 324 ~~f~G~S~Iv~P~G~vla 341 (405)
T PLN00202 324 GHFYGSSHFSAPDASCTP 341 (405)
T ss_pred ccccceeEEEcCCCCEec
Confidence 236677899999999864
No 77
>PLN02504 nitrilase
Probab=88.05 E-value=5 Score=28.98 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=41.0
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecccee---------------ecC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQE---------------KGS 94 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~---------------~~~ 94 (121)
..+..+.+|+|+++.|=.+. ...+...++..|.+++++++.....- ...
T Consensus 194 ~~r~la~~Gadii~~p~~~~----------------~~~w~~~~rarA~En~~~Vv~aN~vg~~~~~~~~~~~~~~G~~~ 257 (346)
T PLN02504 194 LRTAMYAKGIEIYCAPTADS----------------RETWQASMRHIALEGGCFVLSANQFCRRKDYPPPPEYLFSGTEE 257 (346)
T ss_pred HHHHHHHCCCeEEEECCCCC----------------chhHHHHHHHHHHccCcEEEEecccccccccCcccccccccccc
Confidence 34445578999999984321 01223455667889999986443220 000
Q ss_pred ----CCCceEEEEEEECCCCCEEe
Q 033342 95 ----DDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 95 ----~~~~~~Ns~~~i~~~G~i~~ 114 (121)
..-.++=.+.+++|+|+++.
T Consensus 258 ~~~~~~~~~~G~S~IvdP~G~vla 281 (346)
T PLN02504 258 DLTPDSIVCAGGSVIISPSGTVLA 281 (346)
T ss_pred cccccccccCcceEEECCCCCEec
Confidence 01123456899999999874
No 78
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=87.94 E-value=5.9 Score=26.82 Aligned_cols=70 Identities=19% Similarity=0.270 Sum_probs=40.0
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA 109 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~ 109 (121)
..+..+.+|+|+|+.|=.+. .... ............|.+++++++.-... ++...=.+.+++|+
T Consensus 155 ~~~~~~~~ga~lil~ps~~~-~~~~----------~~~~~~~~~~~rA~en~~~vv~~n~~-----g~~~~G~S~i~~p~ 218 (255)
T cd07581 155 LARALALAGADVIVVPAAWV-AGPG----------KEEHWETLLRARALENTVYVAAAGQA-----GPRGIGRSMVVDPL 218 (255)
T ss_pred HHHHHHHCCCcEEEECCccc-CCCC----------chHHHHHHHHHHHHHhCCEEEEEcCc-----CCCcccceEEECCC
Confidence 34555678999999985442 1110 11122344566678889887644211 11233346778889
Q ss_pred CCEEee
Q 033342 110 GNIRST 115 (121)
Q Consensus 110 G~i~~~ 115 (121)
|+++..
T Consensus 219 G~i~~~ 224 (255)
T cd07581 219 GVVLAD 224 (255)
T ss_pred cceeee
Confidence 987654
No 79
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=87.77 E-value=1.7 Score=30.17 Aligned_cols=94 Identities=16% Similarity=0.206 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCch---hhhcccCCC------ChHHHHHHHHHHHcCcEEEeccce
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDAD---NIKIAEPLD------GPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~---~~~~~~~~~------~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
..+-++++...+++..+ ..++-+.|= |+.+.+..+. +.++...++ -.+.+.+...|+++.++.-.| +
T Consensus 155 CPdELeKm~~~Vd~i~~-~~~~~~~Pl-FIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs~g--p 230 (280)
T KOG2792|consen 155 CPDELEKMSAVVDEIEA-KPGLPPVPL-FISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFSTG--P 230 (280)
T ss_pred ChHHHHHHHHHHHHHhc-cCCCCccce-EEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeeccC--C
Confidence 45677888888886633 333333354 4335554332 222222222 245788999999999999777 3
Q ss_pred eecCCCC---ceEEEEEEECCCCCEEeeeec
Q 033342 91 EKGSDDA---RLCNTHVLLDDAGNIRSTYRK 118 (121)
Q Consensus 91 ~~~~~~~---~~~Ns~~~i~~~G~i~~~y~K 118 (121)
+. .+.+ ...--+++++|+|+.+..|-+
T Consensus 231 ~d-~~~DYlVDHSi~mYLidPeg~Fvd~~Gr 260 (280)
T KOG2792|consen 231 KD-EDQDYLVDHSIFMYLIDPEGEFVDYYGR 260 (280)
T ss_pred CC-CCCCeeeeeeEEEEEECCCcceehhhcc
Confidence 31 1221 123456899999999877654
No 80
>cd07582 nitrilase_4 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=87.57 E-value=7.7 Score=27.09 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=41.1
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCC---CceE-EEEEE
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDD---ARLC-NTHVL 105 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~---~~~~-Ns~~~ 105 (121)
..+..+.+|+|+|+.|=.+. .... .......++.-|.+++++++.....-. ... +..| -.+.+
T Consensus 181 ~~r~la~~Gadlil~psa~~-~~~~-----------~~~~~~~~~arA~en~~~vv~aN~~G~-~~~~~~~~~~~G~S~i 247 (294)
T cd07582 181 VARGLAMNGAEVLLRSSSEV-PSVE-----------LDPWEIANRARALENLAYVVSANSGGI-YGSPYPADSFGGGSMI 247 (294)
T ss_pred HHHHHHHCCCcEEEEcCCCC-CCcc-----------hhhHHHHHHHHHHhcCCEEEEeccccc-CcccccCceecceeEE
Confidence 34555678999999887654 1110 111123446677889998874322110 011 1223 45678
Q ss_pred ECCCCCEEee
Q 033342 106 LDDAGNIRST 115 (121)
Q Consensus 106 i~~~G~i~~~ 115 (121)
++|+|+++..
T Consensus 248 vdp~G~vla~ 257 (294)
T cd07582 248 VDYKGRVLAE 257 (294)
T ss_pred ECCCCCEEEe
Confidence 8999998753
No 81
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=86.72 E-value=6.1 Score=27.03 Aligned_cols=66 Identities=11% Similarity=0.088 Sum_probs=39.1
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~ 115 (121)
.++|+++.|=.+. ... .......++.-|.+++++++.-...-....+..++=.+.+++|+|+++..
T Consensus 154 ~gad~i~~~s~~~--~~~-----------~~~~~~~~~aRA~En~~~vv~~n~~G~~~~~~~~~G~S~ivdP~G~vl~~ 219 (256)
T PRK10438 154 NDYDLALYVANWP--APR-----------SLHWQTLLTARAIENQAYVAGCNRVGSDGNGHHYRGDSRIINPQGEIIAT 219 (256)
T ss_pred cCCCEEEEecCCC--CCc-----------hHHHHHHHHHHHHhcCcEEEEecccccCCCCCEEcCceEEECCCCcEEEE
Confidence 5789999886553 111 11123345667889999986543222100112344568899999998754
No 82
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=86.52 E-value=2.7 Score=24.42 Aligned_cols=52 Identities=27% Similarity=0.234 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 22 ANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 22 ~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.+.+.+.+.++ +.+.|..+++|||........ ...+......+|.+.+..|+
T Consensus 60 ~~~~~~~~~~~-~l~~~~~~~ifPeG~~~~~~~-----------~~~~~~g~~~la~~~~~~v~ 111 (118)
T smart00563 60 LARAALREAVR-LLRDGGWLLIFPEGTRSRPGK-----------LLPFKKGAARLALEAGVPIV 111 (118)
T ss_pred HHHHHHHHHHH-HHhCCCEEEEeCCcccCCCCC-----------cCCCcccHHHHHHHcCCCEE
Confidence 34444444444 456789999999998622220 11223345567777776554
No 83
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=85.93 E-value=3.1 Score=26.57 Aligned_cols=35 Identities=20% Similarity=0.173 Sum_probs=24.7
Q ss_pred CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 38 GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 38 ~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+..+++|||..- .. ..++..-...+|.+.++.|+.
T Consensus 95 ~~~l~IFPEGtR-~~-------------~~~fk~G~~~lA~~~~~PIvP 129 (163)
T cd07988 95 EFVLAIAPEGTR-SK-------------VDKWKTGFYHIARGAGVPILL 129 (163)
T ss_pred CcEEEEeCCCCC-CC-------------CcChhhHHHHHHHHcCCCEEE
Confidence 456999999986 21 123556777888899988853
No 84
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=85.05 E-value=3.4 Score=27.42 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
+.+.+.+ ..++.++|-.++||||... ...... +.+....++..-...+|.+.++.|+.-
T Consensus 84 ~~~~~~~-~~~~L~~G~~l~IFPEGtr-s~~~~~----~g~~~~~~fk~G~~~lA~~~~~pIvPv 142 (210)
T cd07986 84 NRESLRE-ALRHLKNGGALIIFPAGRV-STASPP----FGRVSDRPWNPFVARLARKAKAPVVPV 142 (210)
T ss_pred hHHHHHH-HHHHHhCCCEEEEECCccc-cccccc----CCccccCCccHHHHHHHHHHCCCEEEE
Confidence 4443433 3334467889999999986 221100 000012345566778889999888543
No 85
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=84.84 E-value=8.4 Score=26.59 Aligned_cols=63 Identities=11% Similarity=0.128 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+..++.+.+.++.|..-|++.|+++......+........ .-.+.+..+.+.|+++|+.+.+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~~A~~~Gv~l~l 151 (279)
T TIGR00542 89 RQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRR----RFREGLKEAVELAARAQVTLAV 151 (279)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHH----HHHHHHHHHHHHHHHcCCEEEE
Confidence 34567788888888888999999987532211111110000 1124566677788888887744
No 86
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=84.32 E-value=7.9 Score=26.54 Aligned_cols=62 Identities=13% Similarity=0.015 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.+..++.+.+.++.|+.-|++.|+++-... ++.... ....+ ...+.++.+.+.|+++|+.+.
T Consensus 85 r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~--~~~~~~-~~~~~-~~~~~l~~l~~~a~~~gv~l~ 146 (275)
T PRK09856 85 RRESLDMIKLAMDMAKEMNAGYTLISAAHA--GYLTPP-NVIWG-RLAENLSELCEYAENIGMDLI 146 (275)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCC--CCCCCH-HHHHH-HHHHHHHHHHHHHHHcCCEEE
Confidence 456788999999999999999987765432 222111 00001 122467778888899998774
No 87
>cd07579 nitrilase_1_R2 Second nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the second of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=83.98 E-value=10 Score=26.37 Aligned_cols=80 Identities=10% Similarity=0.030 Sum_probs=41.7
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCC----chhh-hcccCCCC--hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEE
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKD----ADNI-KIAEPLDG--PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNT 102 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~----~~~~-~~~~~~~~--~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns 102 (121)
..+..+..|||+|+.|=.+. ..+.. .... .+...... ...+.++.-|.+++++++.....- ....++-.
T Consensus 144 ~~r~~a~~Ga~ii~~psa~~-~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~aRA~EN~~~vv~aN~~g---~~~~~~G~ 219 (279)
T cd07579 144 AGRVLALRGCDLLACPAAIA-IPFVGAHAGTSVPQPYPIPTGADPTHWHLARVRAGENNVYFAFANVPD---PARGYTGW 219 (279)
T ss_pred HHHHHHHCCCCEEEECCCcC-CccccccccccccCCCCCcCccchhHHHHhHhHHhhCCeEEEEeeccC---Cccccccc
Confidence 34555578999999997663 21110 0000 00000000 122346677889999986553221 11223344
Q ss_pred EEEECCCCCEE
Q 033342 103 HVLLDDAGNIR 113 (121)
Q Consensus 103 ~~~i~~~G~i~ 113 (121)
+.+++|+|.++
T Consensus 220 S~ii~P~G~v~ 230 (279)
T cd07579 220 SGVFGPDTFAF 230 (279)
T ss_pred cEEECCCeEEc
Confidence 67888998764
No 88
>cd07564 nitrilases_CHs Nitrilases, cyanide hydratase (CH)s, and similar proteins (class 1 nitrilases). Nitrilases (nitrile aminohydrolases, EC:3.5.5.1) hydrolyze nitriles (RCN) to ammonia and the corresponding carboxylic acid. Most nitrilases prefer aromatic nitriles, some prefer arylacetonitriles and others aliphatic nitriles. This group includes the nitrilase cyanide dihydratase (CDH), which hydrolyzes inorganic cyanide (HCN) to produce formate. It also includes cyanide hydratase (CH), which hydrolyzes HCN to formamide. This group includes four Arabidopsis thaliana nitrilases (Ath)NIT1-4. AthNIT1-3 have a strong substrate preference for phenylpropionitrile (PPN) and other nitriles which may originate from the breakdown of glucosinolates. The product of PPN hydrolysis, phenylacetic acid has auxin activity. AthNIT1-3 can also convert indoacetonitrile to indole-3-acetic acid (IAA, auxin), but with a lower affinity and velocity. From their expression patterns, it has been speculated that
Probab=83.97 E-value=10 Score=26.57 Aligned_cols=75 Identities=7% Similarity=-0.094 Sum_probs=40.7
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceee--------------cCC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEK--------------GSD 95 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~--------------~~~ 95 (121)
..+.++.+|||+++-|=.. +... . .........++.-|.+++++++.-...-. ...
T Consensus 165 ~~r~~a~~ga~ii~~~~~~---~~~~------~-~~~~~~~~~~~arAien~~~vv~~N~vG~~~~~~~~~~~~~~~~~~ 234 (297)
T cd07564 165 ARYALYAQGEQIHVAPWPD---FSPY------Y-LSREAWLAASRHYALEGRCFVLSACQVVTEEDIPADCEDDEEADPL 234 (297)
T ss_pred HHHHHHHCCCeEEEECCCC---cccc------c-ccHHHHHHHHHHHHHhcCCEEEEcccccChhHcccccccccccccc
Confidence 4445567899998864211 1100 0 01112334456778899999875321110 001
Q ss_pred CCceEEEEEEECCCCCEEe
Q 033342 96 DARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 96 ~~~~~Ns~~~i~~~G~i~~ 114 (121)
...++=.+.+++|+|+++.
T Consensus 235 ~~~~~G~S~iv~P~G~il~ 253 (297)
T cd07564 235 EVLGGGGSAIVGPDGEVLA 253 (297)
T ss_pred cccCCCceEEECCCCCeec
Confidence 1224556889999999875
No 89
>PTZ00261 acyltransferase; Provisional
Probab=83.77 E-value=5.3 Score=29.13 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 24 FATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 24 ~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
...+.+.+++..++|-.+++|||..-..+.. .-.++..-.-.+|.+.++.|+
T Consensus 201 ~~~v~~~~~e~Lk~G~sLvIFPEGTRS~~gg----------~L~pFK~GaF~LAieagvPIV 252 (355)
T PTZ00261 201 QAQVQQAIDAHLRLGGSLAFFPEGAINKHPQ----------VLQTFRYGTFATIIKHRMEVY 252 (355)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCcCCcCCCC----------cCCCCcHHHHHHHHHcCCCEE
Confidence 3345555555567888999999998521110 011344455566777887773
No 90
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=83.06 E-value=9.1 Score=26.36 Aligned_cols=79 Identities=15% Similarity=0.184 Sum_probs=47.4
Q ss_pred cccEEEEEEeccc----cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhccc--C--CCChHHHHHHHH
Q 033342 5 HSVRVAVAQMTSI----NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAE--P--LDGPIMQGYCSL 76 (121)
Q Consensus 5 ~~~~ia~vQ~~~~----~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~--~--~~~~~~~~l~~~ 76 (121)
..+|||.+|+..- .+.....+++.+++.. +|++..|=+.- ..-.++ . +.+. - -+.+.++.+.++
T Consensus 2 ~~ikva~~~L~gC~GC~~slldl~E~L~dll~~-----~div~~~~l~D-~keiPE-v-DValVEGsV~~ee~lE~v~El 73 (247)
T COG1941 2 EKIKVATVWLTGCSGCHMSLLDLYEKLLDLLED-----ADIVYCPTLVD-EKEIPE-V-DVALVEGSVCDEEELELVKEL 73 (247)
T ss_pred cceEEEEEEeccccchHHHHHhHHHHHHHhhhh-----hcEEEeecccc-cccCCc-c-cEEEEecccCcHHHHHHHHHH
Confidence 4689999999873 3344445555555543 37777765443 221111 1 1111 0 256778888888
Q ss_pred HHHcCcEEEecccee
Q 033342 77 ARESSMWLSLGGFQE 91 (121)
Q Consensus 77 a~~~~~~ii~G~~~~ 91 (121)
-++.++.|.+|+-..
T Consensus 74 RekakivVA~GsCA~ 88 (247)
T COG1941 74 REKAKIVVALGSCAV 88 (247)
T ss_pred HHhCcEEEEEecchh
Confidence 888899998887543
No 91
>PRK13287 amiF formamidase; Provisional
Probab=80.18 E-value=19 Score=25.85 Aligned_cols=72 Identities=14% Similarity=0.071 Sum_probs=39.1
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA 109 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~ 109 (121)
..+..+.+|||+++-|=.+. .. ..+...-..+.-|.+++++++.-...-. ...-.++=.+.+++|+
T Consensus 173 ~~R~~a~~GAeill~~s~~~-~~------------~~~~w~~~~~arA~en~~~vv~an~~G~-~~~~~~~G~S~Iidp~ 238 (333)
T PRK13287 173 MAREAAYKGANVMIRISGYS-TQ------------VREQWILTNRSNAWQNLMYTASVNLAGY-DGVFYYFGEGQVCNFD 238 (333)
T ss_pred HHHHHHHCCCeEEEECCccC-Cc------------chhHHHHHHHHHHHhCCcEEEEEecccc-CCCeeeeeeeEEECCC
Confidence 34555568999999774332 11 0111122234456778887754322211 1111334567889999
Q ss_pred CCEEee
Q 033342 110 GNIRST 115 (121)
Q Consensus 110 G~i~~~ 115 (121)
|+++..
T Consensus 239 G~vl~~ 244 (333)
T PRK13287 239 GTTLVQ 244 (333)
T ss_pred CcEEEe
Confidence 998754
No 92
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=79.01 E-value=5.8 Score=27.60 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 25 ATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 25 ~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
++-+-++.+|..++++++++=|=..+ +.....-+.++.+.+++++.++.+++-.
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~----------LDi~~Q~evl~ll~~l~~~~~~tvv~vl 196 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSH----------LDIAHQIEVLELLRDLNREKGLTVVMVL 196 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccc----------cCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34445666777889999999996651 1111234678889999999898887663
No 93
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=77.70 E-value=13 Score=24.77 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
..+.+.+..+ +.++|-.+++|||..- .... ...++......+|.+.++.|+.-
T Consensus 108 ~~~~~~~~~~-~l~~g~~v~IfPEGtr-~~~~----------~~~~f~~G~~~lA~~~~~pIvPv 160 (214)
T PLN02901 108 QLECLKRCME-LLKKGASVFFFPEGTR-SKDG----------KLAAFKKGAFSVAAKTGVPVVPI 160 (214)
T ss_pred HHHHHHHHHH-HHhCCCEEEEeCCCCC-CCCC----------cccCchhhHHHHHHHcCCCEEEE
Confidence 3344333333 4457889999999974 2110 11233445566888899888544
No 94
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=77.48 E-value=17 Score=23.96 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 25 ATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 25 ~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
+.+.+.+.+..++|..+++|||..-
T Consensus 88 ~~~~~~~~~~l~~g~~l~iFPEGtr 112 (205)
T cd07993 88 AVLQEYVQELLKNGQPLEFFIEGTR 112 (205)
T ss_pred HHHHHHHHHHHhCCceEEEEcCCCC
Confidence 3445556667778999999999985
No 95
>cd07569 DCase N-carbamyl-D-amino acid amidohydrolase (DCase, class 6 nitrilases). DCase hydrolyses N-carbamyl-D-amino acids to produce D-amino acids. It is an important biocatalyst in the pharmaceutical industry, producing useful D-amino acids for example in the preparation of beta-lactam antibiotics. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 6. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Agrobacterium radiobacter DCase forms a tetramer (dimer of dimers). Some DCases may form trimers.
Probab=76.05 E-value=24 Score=24.71 Aligned_cols=41 Identities=15% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342 74 CSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 74 ~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~ 115 (121)
+.-|.+++++++.....-. ..+..++=.+.+++|+|+++..
T Consensus 220 ~arA~en~~~vv~~n~~G~-~~~~~~~G~S~ii~p~G~vla~ 260 (302)
T cd07569 220 QAGAYQNGTWVVAAAKAGM-EDGCDLIGGSCIVAPTGEIVAQ 260 (302)
T ss_pred hhhhhcccceEEEeecccc-CCCceEecceEEECCCCCEEEe
Confidence 3346678888865432211 1233566778899999998753
No 96
>PF13342 Toprim_Crpt: C-terminal repeat of topoisomerase
Probab=75.81 E-value=10 Score=20.30 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeee
Q 033342 71 QGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 71 ~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
..+.++..+....++-|... ..|+.|++.+++++++++...+
T Consensus 19 ~~~~~Ll~~gkT~~ikGF~S----K~Gk~F~A~L~l~~~~~v~F~F 60 (62)
T PF13342_consen 19 EEVKELLEKGKTGLIKGFKS----KKGKPFDAYLVLDDDKKVKFEF 60 (62)
T ss_pred HHHHHHHHcCCccCccCccc----CCCCEEeEEEEEcCCCeEEeEc
Confidence 45667777777778788433 4578999999999777654433
No 97
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=75.42 E-value=6.3 Score=27.76 Aligned_cols=69 Identities=23% Similarity=0.290 Sum_probs=42.3
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
|...++++++|=|=.. |-++. ....+.+.+.+++++.+..|++.+..-. +-....+..++++ +|+++
T Consensus 150 aL~~~P~lliLDEPt~--GLDp~--------~~~~~~~~l~~l~~~g~~tvlissH~l~--e~~~~~d~v~il~-~G~~~ 216 (293)
T COG1131 150 ALLHDPELLILDEPTS--GLDPE--------SRREIWELLRELAKEGGVTILLSTHILE--EAEELCDRVIILN-DGKII 216 (293)
T ss_pred HHhcCCCEEEECCCCc--CCCHH--------HHHHHHHHHHHHHhCCCcEEEEeCCcHH--HHHHhCCEEEEEe-CCEEE
Confidence 3345788888888654 32211 1235677888888888766766654321 2234566777776 78775
Q ss_pred ee
Q 033342 114 ST 115 (121)
Q Consensus 114 ~~ 115 (121)
..
T Consensus 217 ~~ 218 (293)
T COG1131 217 AE 218 (293)
T ss_pred Ee
Confidence 43
No 98
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=75.14 E-value=16 Score=25.09 Aligned_cols=60 Identities=18% Similarity=0.143 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcE
Q 033342 22 ANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMW 83 (121)
Q Consensus 22 ~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ 83 (121)
.|.+.+...++...+.+.-+.+|||..= .-.... -.....+++....+.+..+|.+.+..
T Consensus 99 ~~~~alk~~~~lLk~G~~~i~IfPEGtR-~r~~~~-g~~~p~~Fd~~~~~~~~~La~~s~~p 158 (235)
T cd07985 99 ANLATLKEMQQLLNEGGQLIWVAPSGGR-DRPDAN-GEWYPDPFDPSAVEMMRLLAQKSRVP 158 (235)
T ss_pred ccHHHHHHHHHHHHcCCeEEEEcCCCCC-CCCCCC-CCccCCccchHHHHHHHHHHHhcCCC
Confidence 5666666555544343444789999864 111111 11112246777888999999888774
No 99
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=74.23 E-value=12 Score=23.78 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=31.9
Q ss_pred HHHHHHC-CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecccee
Q 033342 31 VKEAASA-GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQE 91 (121)
Q Consensus 31 ~~~a~~~-~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~ 91 (121)
+.++.++ |..+++|||.....+. .....+......+|.+.++.|+.-++..
T Consensus 93 ~~~~l~~~g~~v~ifPeG~~~~~~----------~~~~~~~~g~~~la~~~~~~IvPv~i~~ 144 (187)
T cd06551 93 VARLLSKPGSVVWIFPEGTRTRRD----------KRPLQFKPGVAHLAEKAGVPIVPVALRY 144 (187)
T ss_pred HHHHHhcCCcEEEEeCCcccCCCC----------CCcccccchHHHHHHHcCCcEEEEEEec
Confidence 3334456 8999999999852111 0122344566778888899887665443
No 100
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.20 E-value=10 Score=25.13 Aligned_cols=47 Identities=17% Similarity=0.188 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECC-CCCEEeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDD-AGNIRSTY 116 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~-~G~i~~~y 116 (121)
.+.+.+.++.++.+..+++-+.... .-..+.+..+++.. +|+++...
T Consensus 169 ~~~~~l~~~~~~~~~tiii~sH~~~--~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 169 QLQEELLDIWRETGKTVLLVTHDID--EAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHH--HHHHhCCEEEEEECCCCEEEEEE
Confidence 3445555655555655555432220 11234566777764 68886554
No 101
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=73.78 E-value=21 Score=23.03 Aligned_cols=63 Identities=17% Similarity=0.051 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 19 DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 19 ~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
+.++-.+.+.++++++.+.++.+|++-=... ..+... .........+.+.++++|+++++.++
T Consensus 88 ~~~~~~~nl~~ii~~~~~~~~~~il~tp~~~-~~~~~~---~~~~~~~~~~~~~~~~~a~~~~~~~v 150 (198)
T cd01821 88 PYTTYKEYLRRYIAEARAKGATPILVTPVTR-RTFDEG---GKVEDTLGDYPAAMRELAAEEGVPLI 150 (198)
T ss_pred cHHHHHHHHHHHHHHHHHCCCeEEEECCccc-cccCCC---CcccccchhHHHHHHHHHHHhCCCEE
Confidence 3445556666666666667888887621111 111110 00111345678889999999998773
No 102
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=73.43 E-value=8.2 Score=24.79 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=31.3
Q ss_pred CChHHHHHHHHHHHcCcEEEeccceee-----------cCCCC----ceEEEEEEECCCCCEEeeeecC
Q 033342 66 DGPIMQGYCSLARESSMWLSLGGFQEK-----------GSDDA----RLCNTHVLLDDAGNIRSTYRKI 119 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~ii~G~~~~~-----------~~~~~----~~~Ns~~~i~~~G~i~~~y~K~ 119 (121)
+.......++++.+++..+-+-|=+.. ....| ..--+.++|+++|.+...+++.
T Consensus 71 S~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v 139 (157)
T COG1225 71 SPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKV 139 (157)
T ss_pred eCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEecCC
Confidence 344556677777777765432221110 00111 2456789999999998877654
No 103
>KOG0806 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=72.72 E-value=3.7 Score=29.12 Aligned_cols=27 Identities=30% Similarity=0.366 Sum_probs=23.3
Q ss_pred CCCceEEEEEEECCCCCEEeeeecCCC
Q 033342 95 DDARLCNTHVLLDDAGNIRSTYRKIHL 121 (121)
Q Consensus 95 ~~~~~~Ns~~~i~~~G~i~~~y~K~hL 121 (121)
++...||...+++-+|....+|+|.|+
T Consensus 123 ~l~~~yrk~hlFD~d~~~~~ry~e~~~ 149 (298)
T KOG0806|consen 123 DGLAKYRKNHLFDTDGPGVIRYRESHL 149 (298)
T ss_pred chhheeeeeEEeccCCccceeeeeeec
Confidence 445689999999999999999999875
No 104
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=72.61 E-value=11 Score=25.18 Aligned_cols=39 Identities=26% Similarity=0.280 Sum_probs=24.9
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccce
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
.+++|.+.|++++|-|= + -..+.+.|+++++.++.|.+.
T Consensus 72 ~a~~a~~aGA~FivSP~-~---------------------~~~v~~~~~~~~i~~iPG~~T 110 (196)
T PF01081_consen 72 QAEAAIAAGAQFIVSPG-F---------------------DPEVIEYAREYGIPYIPGVMT 110 (196)
T ss_dssp HHHHHHHHT-SEEEESS------------------------HHHHHHHHHHTSEEEEEESS
T ss_pred HHHHHHHcCCCEEECCC-C---------------------CHHHHHHHHHcCCcccCCcCC
Confidence 34455566777777762 2 245677788889988888653
No 105
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.37 E-value=30 Score=23.78 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+..++.+.+.++.|+.-|+..|+++-.. .++.... ......-.+.++.+.+.|+++|+.+.+
T Consensus 94 r~~~~~~~~~~i~~a~~lG~~~i~~~~~~--~~~~~~~--~~~~~~~~~~l~~l~~~A~~~GV~i~i 156 (283)
T PRK13209 94 RAQALEIMRKAIQLAQDLGIRVIQLAGYD--VYYEQAN--NETRRRFIDGLKESVELASRASVTLAF 156 (283)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCcc--ccccccH--HHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 45567888899999999999999875211 1111100 000001123456677888888887644
No 106
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=71.15 E-value=30 Score=23.70 Aligned_cols=63 Identities=10% Similarity=0.045 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+..++.+.+.++.|..-|++.|++|-...+.....+... ....+.+..+.+.|+++|+.+.+
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~----~~~~~~l~~l~~~a~~~gv~l~l 151 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETR----QRFIEGLAWAVEQAAAAQVMLAV 151 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHH----HHHHHHHHHHHHHHHHhCCEEEE
Confidence 3456788888899898999999998622110011111000 01123456677778888887754
No 107
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=71.12 E-value=25 Score=22.66 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=27.9
Q ss_pred HHHHHHHHHHcCcEEEeccceeecCCCCc--eEEEEEEECCCCCEEeeee
Q 033342 70 MQGYCSLARESSMWLSLGGFQEKGSDDAR--LCNTHVLLDDAGNIRSTYR 117 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii~G~~~~~~~~~~~--~~Ns~~~i~~~G~i~~~y~ 117 (121)
.+.+.++++.+++...-..... ...++. .-+..++++|+|++...|.
T Consensus 124 ~~~i~~l~~~~~v~~~~~~~~~-~~~~~~i~Hs~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 124 REEIEELAKQFGVYYEKVPEDK-PEGDYQIDHSAFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp HHHHHHHHHHCTHCEEEEESSS-TTSCEEEEESSEEEEE-TTSEEEEEEC
T ss_pred HHHHHHHHHHHHhhhccccccc-CCCCceEecccEEEEEcCCCcEEEEEc
Confidence 4567888888887553331111 111111 2356799999999998884
No 108
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=70.86 E-value=4.9 Score=24.44 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=14.6
Q ss_pred EEEEEECCCCCEEeeee
Q 033342 101 NTHVLLDDAGNIRSTYR 117 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~y~ 117 (121)
.+.++|+|+|+++..|+
T Consensus 125 ~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 125 AAIYLVDPDGKLVRYYG 141 (142)
T ss_pred ceEEEECCCCCEEEeec
Confidence 36899999999988875
No 109
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=70.60 E-value=8.6 Score=26.33 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=42.8
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
+.+|..-++++++|=|-.. .+.+..-++.++-+.++|++ |+.+++-+.+-. -..++-+..++.+ +|
T Consensus 147 IARALaM~P~vmLFDEPTS----------ALDPElv~EVL~vm~~LA~e-GmTMivVTHEM~--FAr~VadrviFmd-~G 212 (240)
T COG1126 147 IARALAMDPKVMLFDEPTS----------ALDPELVGEVLDVMKDLAEE-GMTMIIVTHEMG--FAREVADRVIFMD-QG 212 (240)
T ss_pred HHHHHcCCCCEEeecCCcc----------cCCHHHHHHHHHHHHHHHHc-CCeEEEEechhH--HHHHhhheEEEee-CC
Confidence 3445566899999999665 22222345778888888877 455554422210 1124556677776 68
Q ss_pred CEEeee
Q 033342 111 NIRSTY 116 (121)
Q Consensus 111 ~i~~~y 116 (121)
.++...
T Consensus 213 ~iie~g 218 (240)
T COG1126 213 KIIEEG 218 (240)
T ss_pred EEEEec
Confidence 666543
No 110
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=70.17 E-value=7.9 Score=25.45 Aligned_cols=25 Identities=40% Similarity=0.373 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 25 ATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 25 ~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
....+.+.++.++|-.+++|||...
T Consensus 97 ~~~~~~~~~~l~~G~~l~IFPEGtr 121 (203)
T cd07992 97 AAVFDAVGEALKAGGAIGIFPEGGS 121 (203)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 3344455556678899999999986
No 111
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=70.05 E-value=15 Score=26.16 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEE
Q 033342 26 TCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVL 105 (121)
Q Consensus 26 ~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~ 105 (121)
++...+..+.-+.++++++=|-.+ | +.-......++.+++..++.++.|+..+..- .+=..+-+..+.
T Consensus 162 RmraeLaaaLLh~p~VLfLDEpTv--g--------LDV~aq~~ir~Flke~n~~~~aTVllTTH~~--~di~~lc~rv~~ 229 (325)
T COG4586 162 RMRAELAAALLHPPKVLFLDEPTV--G--------LDVNAQANIREFLKEYNEERQATVLLTTHIF--DDIATLCDRVLL 229 (325)
T ss_pred HHHHHHHHHhcCCCcEEEecCCcc--C--------cchhHHHHHHHHHHHHHHhhCceEEEEecch--hhHHHhhhheEE
Confidence 333444444456788888888765 2 1111224567778888888899998775332 122356788888
Q ss_pred ECCCCCEEe
Q 033342 106 LDDAGNIRS 114 (121)
Q Consensus 106 i~~~G~i~~ 114 (121)
|+ .|+++.
T Consensus 230 I~-~Gqlv~ 237 (325)
T COG4586 230 ID-QGQLVF 237 (325)
T ss_pred ee-CCcEee
Confidence 87 788764
No 112
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=69.56 E-value=14 Score=24.72 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYR 117 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~ 117 (121)
...+.+.+++++.+..+++-+.... .- ......+++. +|+++..|.
T Consensus 183 ~l~~~l~~~~~~~g~tvii~sH~~~--~~-~~~~~~~~l~-~G~i~~~~~ 228 (233)
T PRK11629 183 SIFQLLGELNRLQGTAFLVVTHDLQ--LA-KRMSRQLEMR-DGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHH--HH-HhhCEEEEEE-CCEEEEEec
Confidence 3444455555544555554433321 11 1234556665 788876553
No 113
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=69.27 E-value=9.7 Score=27.53 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=35.3
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +- .........+.+.++.++.++.|++-+.... .-.++.+..++++ +|+++
T Consensus 156 ~~~P~iLLlDEPts--~L--------D~~t~~~i~~lL~~l~~~~g~tiiliTH~~~--~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 156 ASNPKVLLCDEATS--AL--------DPATTQSILELLKEINRRLGLTILLITHEMD--VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HhCCCEEEEeCCcc--cC--------CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34677777777554 11 1111234556677777776777766543220 1123456667775 67764
No 114
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=69.21 E-value=25 Score=24.20 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
....++.+.+.++.|..-|++.+++.-... .+...+.... .--+.+..+.+.|+++++.+.+
T Consensus 80 r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~-~~~~~~~~~~----~~~~~l~~l~~~a~~~gi~l~l 141 (279)
T cd00019 80 REKSIERLKDEIERCEELGIRLLVFHPGSY-LGQSKEEGLK----RVIEALNELIDKAETKGVVIAL 141 (279)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCC-CCCCHHHHHH----HHHHHHHHHHHhccCCCCEEEE
Confidence 567788999999999999999877633332 1111111000 1113344455555677777654
No 115
>PRK07324 transaminase; Validated
Probab=69.21 E-value=18 Score=26.10 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=26.7
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
..++++|+++--..++|.. .+.+.++.+.++|++++++++.=
T Consensus 151 ~~~~kli~i~~p~NPtG~~----------~~~~~l~~i~~~a~~~~~~ii~D 192 (373)
T PRK07324 151 RPNTKLICINNANNPTGAL----------MDRAYLEEIVEIARSVDAYVLSD 192 (373)
T ss_pred CCCCcEEEEeCCCCCCCCC----------CCHHHHHHHHHHHHHCCCEEEEE
Confidence 3456777766444434432 24456788889999999887653
No 116
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=68.37 E-value=28 Score=24.05 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 24 FATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 24 ~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.+.+.++..++.++|.|++|..=.++ -+..+++.+.++|+..+..+.
T Consensus 70 ~~Av~e~~~~~L~~g~d~iV~SVGAL---------------ad~~l~erl~~lak~~~~rv~ 116 (255)
T COG1712 70 PEAVREYVPKILKAGIDVIVMSVGAL---------------ADEGLRERLRELAKCGGARVY 116 (255)
T ss_pred HHHHHHHhHHHHhcCCCEEEEechhc---------------cChHHHHHHHHHHhcCCcEEE
Confidence 44566666777778888888877666 255677888888887775553
No 117
>COG1929 Glycerate kinase [Carbohydrate transport and metabolism]
Probab=68.35 E-value=7.8 Score=28.34 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=31.2
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE--Eecccee
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL--SLGGFQE 91 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i--i~G~~~~ 91 (121)
.+||||++-|..+ -.++..+..--.+.++|+++++++ +.|++-+
T Consensus 283 ~daDLVITGEGr~-----------D~Qs~~GK~pigVA~~Akk~~vPvIaiaGs~~~ 328 (378)
T COG1929 283 KDADLVITGEGRI-----------DSQSLHGKTPIGVAKLAKKYGVPVIAIAGSLGE 328 (378)
T ss_pred ccCCEEEeCCCcc-----------cccccCCccchHHHHhhhhhCCCEEEEeccccc
Confidence 4799999999887 122345556667889999998766 5665443
No 118
>PRK10342 glycerate kinase I; Provisional
Probab=68.09 E-value=10 Score=27.92 Aligned_cols=43 Identities=14% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE--Eeccce
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL--SLGGFQ 90 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i--i~G~~~ 90 (121)
+++|||+.-|..+ -.++..+.....+.++|+++++++ +.|++.
T Consensus 283 ~~ADLVITGEG~~-----------D~QTl~GK~p~gVa~~A~~~~vPviai~G~~~ 327 (381)
T PRK10342 283 HDCTLVITGEGRI-----------DSQSIHGKVPIGVANVAKKYHKPVIGIAGSLT 327 (381)
T ss_pred ccCCEEEECCCcC-----------cccccCCccHHHHHHHHHHhCCCEEEEecccC
Confidence 5799999999987 123356677778888999987554 677653
No 119
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.93 E-value=12 Score=24.71 Aligned_cols=43 Identities=7% Similarity=0.206 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..++++ +|+++
T Consensus 169 ~l~~~l~~~~~~~~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~ 211 (214)
T cd03297 169 QLLPELKQIKKNLNIPVIFVTHDLS--EAEYLADRIVVME-DGRLQ 211 (214)
T ss_pred HHHHHHHHHHHHcCcEEEEEecCHH--HHHHhcCEEEEEE-CCEEE
Confidence 4455566666665665555432221 1113456667776 67764
No 120
>PLN02510 probable 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=67.61 E-value=12 Score=27.56 Aligned_cols=12 Identities=33% Similarity=0.332 Sum_probs=9.6
Q ss_pred CCcEEEccCCcc
Q 033342 38 GAKLLCFPENFS 49 (121)
Q Consensus 38 ~~dlvv~PE~~~ 49 (121)
+.-+++|||..-
T Consensus 172 ~~~LvIFPEGTR 183 (374)
T PLN02510 172 PLWLALFPEGTD 183 (374)
T ss_pred CcEEEEeCCcCC
Confidence 356999999985
No 121
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=66.99 E-value=15 Score=27.02 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=31.8
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE--Eeccce
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL--SLGGFQ 90 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i--i~G~~~ 90 (121)
+++|+|+.-|..+ -.++..+.....+.++|+++++++ +.|++.
T Consensus 282 ~~ADlVITGEG~~-----------D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v~ 326 (375)
T TIGR00045 282 KDADLVITGEGRL-----------DRQSLMGKAPVGVAKRAKKYGVPVIAIAGSLG 326 (375)
T ss_pred cCCCEEEECCCcc-----------cccccCCchHHHHHHHHHHhCCeEEEEecccC
Confidence 5799999999987 123356677788889999997654 677653
No 122
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=66.45 E-value=39 Score=23.18 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=35.6
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecC---CCCceEEEEEEEC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGS---DDARLCNTHVLLD 107 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~---~~~~~~Ns~~~i~ 107 (121)
.+....+|+|+|+.|=.+. .... .......+..-|.+++++++.....-... .+..++-.+.+++
T Consensus 162 ~r~l~~~ga~ii~~ps~~~-~~~~-----------~~~~~~~~~arA~en~~~vv~an~~G~~~~~~~~~~~~G~S~i~~ 229 (280)
T cd07574 162 ARALAEAGADLLLVPSCTD-TRAG-----------YWRVRIGAQARALENQCYVVQSGTVGNAPWSPAVDVNYGQAAVYT 229 (280)
T ss_pred HHHHHHcCCCEEEECCcCC-cccc-----------HHHHHHHHHHHHHhhCceEEEeCCCCCCCCccccccccccceeec
Confidence 3445578999999985432 1100 01122234566778899886543221100 0223455577888
Q ss_pred CC
Q 033342 108 DA 109 (121)
Q Consensus 108 ~~ 109 (121)
|.
T Consensus 230 P~ 231 (280)
T cd07574 230 PC 231 (280)
T ss_pred CC
Confidence 85
No 123
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.40 E-value=15 Score=24.06 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..++++ +|++.
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~--~~~~~~d~i~~l~-~G~i~ 208 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE--DAKRLAQRVVFLD-NGRIA 208 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH--HHHhhhCEEEEEE-CCEEe
Confidence 3445556665555666655533221 1123456677776 68764
No 124
>PRK09932 glycerate kinase II; Provisional
Probab=65.66 E-value=21 Score=26.35 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=31.6
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE--Eeccce
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL--SLGGFQ 90 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i--i~G~~~ 90 (121)
-+++|+|+.-|..+ + .++..+...-.+.++|+++++++ +.|++.
T Consensus 282 l~~ADlVITGEG~~----------D-~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~~ 327 (381)
T PRK09932 282 VQGAALVITGEGRI----------D-SQTAGGKAPLGVASVAKQFNVPVIGIAGVLG 327 (381)
T ss_pred hccCCEEEECCCcc----------c-ccccCCccHHHHHHHHHHcCCCEEEEecccC
Confidence 35799999999987 1 22356667778888999987554 667653
No 125
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.60 E-value=18 Score=20.88 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=18.9
Q ss_pred CCChHHHHHHHHHHHcCcEEEec
Q 033342 65 LDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 65 ~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
.+......+.+.|++++++++.-
T Consensus 59 vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 59 VSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred cChHHHHHHHHHHHHcCCcEEEE
Confidence 45678888999999999988654
No 126
>cd07566 ScNTA1_like Saccharomyces cerevisiae N-terminal amidase NTA1, and related proteins (class 3 nitrilases). Saccharomyces cerevisiae NTA1 functions in the N-end rule protein degradation pathway. It specifically deaminates the N-terminal asparagine and glutamine residues of substrates of this pathway, to aspartate and glutamate respectively, these latter are the destabilizing residues. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 3.
Probab=65.41 E-value=24 Score=24.91 Aligned_cols=20 Identities=15% Similarity=0.365 Sum_probs=15.1
Q ss_pred HHHHHHHCCCcEEEccCCcc
Q 033342 30 LVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~ 49 (121)
+.+..+..|||||+.|=.|.
T Consensus 184 ~~r~la~~Gadii~~paaw~ 203 (295)
T cd07566 184 FATHVLDNGTELIICPMAWL 203 (295)
T ss_pred HHHHHHHCCCCEEEEechhc
Confidence 34445578999999997775
No 127
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=65.37 E-value=15 Score=24.85 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=11.7
Q ss_pred HHHHHHHCCCcEEEccCC
Q 033342 30 LVKEAASAGAKLLCFPEN 47 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~ 47 (121)
++++|.+.|++++|-|=.
T Consensus 77 q~~~a~~aGa~fiVsP~~ 94 (211)
T COG0800 77 QARQAIAAGAQFIVSPGL 94 (211)
T ss_pred HHHHHHHcCCCEEECCCC
Confidence 445566677787777653
No 128
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=65.33 E-value=17 Score=22.01 Aligned_cols=64 Identities=20% Similarity=0.270 Sum_probs=37.7
Q ss_pred cccEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHH
Q 033342 5 HSVRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCS 75 (121)
Q Consensus 5 ~~~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (121)
...+|+.+...-. +-...+...+++..+-..+++.|++|+..+... ..++.....++.++.+..
T Consensus 4 ~~~~v~~~~s~~~--~i~~~qdalDLi~~~~~~~~~~i~l~~~~l~~d-----FF~L~TglAGeiLQKf~N 67 (113)
T PF13788_consen 4 NGIRVAEVSSDEP--LISDEQDALDLIGTAYEHGADRIILPKEALSED-----FFDLRTGLAGEILQKFVN 67 (113)
T ss_pred CCeEEEEEeCCCC--eecchhHHHHHHHHHHHcCCCEEEEEhHHCCHH-----HHHhhcchHHHHHHHHHh
Confidence 3466766665422 222334566677777778999999999988322 223443344555554443
No 129
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=65.32 E-value=24 Score=29.26 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=32.7
Q ss_pred HHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 28 SRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 28 ~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
.+.+.++.++|-.+++|||... .... .-.++..-+..+|.+.+++|+.-
T Consensus 501 ~~~~~~~l~~g~~~~ifPeGt~-~~~~----------~~~~~~~g~~~~a~~~~~~i~pv 549 (1146)
T PRK08633 501 LEFIRKALDDGEVVCIFPEGAI-TRNG----------QLNEFKRGFELIVKGTDVPIIPF 549 (1146)
T ss_pred HHHHHHHHhCCCEEEEECCcCC-CCCC----------CccchhHHHHHHHHHCCCCEEEE
Confidence 3444456677889999999986 2111 12246677888899999888544
No 130
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.28 E-value=17 Score=24.10 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
.+.+.+.+++++++..+++-+.... .-..+.+..+++. +|+++.
T Consensus 169 ~l~~~l~~~~~~~~~tvi~~tH~~~--~~~~~~d~i~~l~-~G~i~~ 212 (220)
T cd03265 169 HVWEYIEKLKEEFGMTILLTTHYME--EAEQLCDRVAIID-HGRIIA 212 (220)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEe-CCEEEE
Confidence 3445566666665655555432220 1123456777776 787753
No 131
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=65.28 E-value=34 Score=22.04 Aligned_cols=61 Identities=10% Similarity=-0.087 Sum_probs=38.6
Q ss_pred HHHHHHHHHCCCcEEEccCCccCCCCC--Cchh-hhcccCCCChHHHHHHHHHHHcCcEEEeccc
Q 033342 28 SRLVKEAASAGAKLLCFPENFSYVGDK--DADN-IKIAEPLDGPIMQGYCSLARESSMWLSLGGF 89 (121)
Q Consensus 28 ~~~~~~a~~~~~dlvv~PE~~~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~ 89 (121)
.+.++..++-|.|-||+--... .+.. +... ...........++.+.++|.++||-+.+|..
T Consensus 23 ~~~~~~m~~~GidtlIlq~~~~-~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 23 REEFRAMKAIGIDTLILQWTGY-GGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred HHHHHHHHHcCCcEEEEEEeec-CCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 3444555567999999886654 2211 1111 0111124567889999999999999999964
No 132
>PRK07534 methionine synthase I; Validated
Probab=65.16 E-value=45 Score=24.16 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEcc
Q 033342 19 DLAANFATCSRLVKEAASAGAKLLCFP 45 (121)
Q Consensus 19 ~~~~n~~~~~~~~~~a~~~~~dlvv~P 45 (121)
+.++-.+....+++...+.|+|+++|-
T Consensus 125 ~~~e~~~~~~~qi~~l~~~gvD~l~~E 151 (336)
T PRK07534 125 THALAVEAFHEQAEGLKAGGADVLWVE 151 (336)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence 345566666677776678899999984
No 133
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=65.10 E-value=11 Score=27.17 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=46.3
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
+.+|...++++++.=|... .+.+......++.|.++=+++++.|++=+.+- .-=.++-|...+++ +|
T Consensus 152 IARALa~~P~iLL~DEaTS----------ALDP~TT~sIL~LL~~In~~lglTIvlITHEm--~Vvk~ic~rVavm~-~G 218 (339)
T COG1135 152 IARALANNPKILLCDEATS----------ALDPETTQSILELLKDINRELGLTIVLITHEM--EVVKRICDRVAVLD-QG 218 (339)
T ss_pred HHHHHhcCCCEEEecCccc----------cCChHHHHHHHHHHHHHHHHcCCEEEEEechH--HHHHHHhhhheEee-CC
Confidence 3446667888888888765 22222345677778888889999887654221 01125778888886 78
Q ss_pred CEEe
Q 033342 111 NIRS 114 (121)
Q Consensus 111 ~i~~ 114 (121)
+++.
T Consensus 219 ~lvE 222 (339)
T COG1135 219 RLVE 222 (339)
T ss_pred EEEE
Confidence 7753
No 134
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=65.09 E-value=15 Score=24.65 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=31.8
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +-+ ......+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 130 ~~~p~lllLDEPt~--gLD--------~~~~~~l~~~l~~~~~~~~~tii~~sH~~~--~~~~~~d~v~~l~-~G~i~ 194 (230)
T TIGR01184 130 SIRPKVLLLDEPFG--ALD--------ALTRGNLQEELMQIWEEHRVTVLMVTHDVD--EALLLSDRVVMLT-NGPAA 194 (230)
T ss_pred HcCCCEEEEcCCCc--CCC--------HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhcCEEEEEe-CCcEe
Confidence 34667777777543 111 111224455566666666666655543221 1123445566665 56654
No 135
>KOG2848 consensus 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]
Probab=65.02 E-value=15 Score=25.72 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=25.7
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 19 DLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 19 ~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
+.++.++.+.+..++.++++..+.||||..=
T Consensus 144 r~~~Ai~~l~~~~~~mkk~~~kvWvFPEGTR 174 (276)
T KOG2848|consen 144 RREKAIDTLDKCAERMKKENRKVWVFPEGTR 174 (276)
T ss_pred CHHHHHHHHHHHHHHHHhCCeeEEEccCCcc
Confidence 4667777788888888889999999999874
No 136
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=64.50 E-value=16 Score=25.36 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEEC
Q 033342 29 RLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLD 107 (121)
Q Consensus 29 ~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~ 107 (121)
-++.+|...++|++++=|=+. |-+ ......+.+.|.++.++ |+.|++-+..-. .-..+++..++++
T Consensus 148 V~lARAL~~~p~lllLDEP~~--gvD--------~~~~~~i~~lL~~l~~e-g~tIl~vtHDL~--~v~~~~D~vi~Ln 213 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFT--GVD--------VAGQKEIYDLLKELRQE-GKTVLMVTHDLG--LVMAYFDRVICLN 213 (254)
T ss_pred HHHHHHhccCCCEEEecCCcc--cCC--------HHHHHHHHHHHHHHHHC-CCEEEEEeCCcH--HhHhhCCEEEEEc
Confidence 345556678999999999775 222 11234567778888877 888876543221 1123455666665
No 137
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=64.43 E-value=27 Score=24.87 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=27.3
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
..+++++++..-..++|.. .+.+.++.+.++|+++++.|+.=
T Consensus 134 ~~~~~~i~i~~p~NPtG~~----------~~~~~~~~l~~~a~~~~~~ii~D 175 (350)
T TIGR03537 134 LEETKIVWINYPHNPTGAT----------APRSYLKETIAMCREHGIILCSD 175 (350)
T ss_pred hhccEEEEEeCCCCCcCcc----------cCHHHHHHHHHHHHHcCcEEEEe
Confidence 3467777776544444532 23455788889999999887654
No 138
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=64.03 E-value=20 Score=23.97 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=23.8
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccce
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
..++|.+.|++++|-|=+. ..+.+.|+++++..+.|.+.
T Consensus 68 ~a~~ai~aGA~FivSP~~~----------------------~~vi~~a~~~~i~~iPG~~T 106 (201)
T PRK06015 68 QFEDAAKAGSRFIVSPGTT----------------------QELLAAANDSDVPLLPGAAT 106 (201)
T ss_pred HHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCCEeCCCCC
Confidence 3455566677777776422 34555677777777777543
No 139
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=63.96 E-value=31 Score=21.83 Aligned_cols=78 Identities=13% Similarity=-0.022 Sum_probs=38.4
Q ss_pred cEEEEEEecc---c--cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcC
Q 033342 7 VRVAVAQMTS---I--NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESS 81 (121)
Q Consensus 7 ~~ia~vQ~~~---~--~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 81 (121)
..+.+++.-. . .+.++-.+.+.++++.+.+.++.+|+..-.-. ..+...............+-+.+.++|++.+
T Consensus 60 ~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~~~~~il~~~~p~-~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~ 138 (183)
T cd04501 60 PAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEANGIKVILASPLPV-DDYPWKPQWLRPANKLKSLNRWLKDYARENG 138 (183)
T ss_pred CCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHCCCcEEEEeCCCc-CccccchhhcchHHHHHHHHHHHHHHHHHcC
Confidence 3455666532 1 23455555666666666667888777531111 1111000000000112356667888898888
Q ss_pred cEEE
Q 033342 82 MWLS 85 (121)
Q Consensus 82 ~~ii 85 (121)
+.++
T Consensus 139 v~~v 142 (183)
T cd04501 139 LLFL 142 (183)
T ss_pred CCEE
Confidence 7653
No 140
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.94 E-value=14 Score=25.84 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..|++-+.... .-..+.+..+++. +|+++
T Consensus 183 ~l~~~L~~l~~~~g~tviiitHd~~--~~~~~~drv~~l~-~G~i~ 225 (290)
T PRK13634 183 EMMEMFYKLHKEKGLTTVLVTHSME--DAARYADQIVVMH-KGTVF 225 (290)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 4455566666666766655543221 1123456777775 67764
No 141
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=63.92 E-value=20 Score=26.13 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=42.1
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i 112 (121)
+|.+.++||++.-|.|. .+.+-...+..+.|.++-++++-.|++-+..- ++.=++=+...+. .+|++
T Consensus 177 RAla~~~~IlLMDEaFS----------ALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL--dEAlriG~rIaim-kdG~i 243 (386)
T COG4175 177 RALANDPDILLMDEAFS----------ALDPLIRTEMQDELLELQAKLKKTIVFITHDL--DEALRIGDRIAIM-KDGEI 243 (386)
T ss_pred HHHccCCCEEEecCchh----------hcChHHHHHHHHHHHHHHHHhCCeEEEEecCH--HHHHhccceEEEe-cCCeE
Confidence 35577999999999987 22222344566777777777777776554322 1222344555555 47877
Q ss_pred Ee
Q 033342 113 RS 114 (121)
Q Consensus 113 ~~ 114 (121)
+.
T Consensus 244 vQ 245 (386)
T COG4175 244 VQ 245 (386)
T ss_pred EE
Confidence 64
No 142
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=63.83 E-value=29 Score=20.72 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc-CcEEEecc
Q 033342 25 ATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES-SMWLSLGG 88 (121)
Q Consensus 25 ~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~~~ii~G~ 88 (121)
+++...+++..+.++|.|-|.=.-. .+... . .-+..+.+.+..++. ++.++.|+
T Consensus 52 ~~~~~~~~~l~~~~~d~IHlssC~~-~~~~~--------~-~CP~~~~~~~~I~~~~gi~VV~GT 106 (107)
T PF08821_consen 52 RKLVRRIKKLKKNGADVIHLSSCMV-KGNPH--------G-PCPHIDEIKKIIEEKFGIEVVEGT 106 (107)
T ss_pred hHHHHHHHHHHHCCCCEEEEcCCEe-cCCCC--------C-CCCCHHHHHHHHHHHhCCCEeeec
Confidence 4566677777788999999987665 32210 0 112355555544444 88888875
No 143
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=63.81 E-value=21 Score=23.92 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=24.3
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccce
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
..++|.+.|++++|-|=+. ..+.+.|+++++..+.|.+.
T Consensus 72 ~a~~a~~aGA~FivsP~~~----------------------~~v~~~~~~~~i~~iPG~~T 110 (204)
T TIGR01182 72 QLRQAVDAGAQFIVSPGLT----------------------PELAKHAQDHGIPIIPGVAT 110 (204)
T ss_pred HHHHHHHcCCCEEECCCCC----------------------HHHHHHHHHcCCcEECCCCC
Confidence 3445566677777766422 24566677778777777543
No 144
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=63.04 E-value=40 Score=23.69 Aligned_cols=19 Identities=11% Similarity=0.141 Sum_probs=14.1
Q ss_pred CChHHHHHHHHHHHcCcEE
Q 033342 66 DGPIMQGYCSLARESSMWL 84 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~i 84 (121)
+..+.+.+.+.|++++.-+
T Consensus 99 D~~~~~~l~~~A~~~g~~i 117 (267)
T PRK13301 99 DDALRARLIAAAEAGGARI 117 (267)
T ss_pred CHHHHHHHHHHHHhCCCEE
Confidence 5677888889888876444
No 145
>PLN02349 glycerol-3-phosphate acyltransferase
Probab=62.92 E-value=48 Score=24.83 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCc
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSM 82 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~ 82 (121)
...|.+.+.+........|.=+.|+||..= .-.+..+-.....+++...++.+..++++.+.
T Consensus 276 ~~~N~kslk~~~~lL~~Gg~~iwIaPsGgR-dR~d~~~g~~~papFD~~svd~mR~l~~~s~~ 337 (426)
T PLN02349 276 RKANTRTLKEMALLLREGGQLIWIAPSGGR-DRPDPLTGEWTPAPFDPSAVDNMRRLTEKSKA 337 (426)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCCCCC-CCCCccCCCccCCCCChHHHHHHHHHHHhcCC
Confidence 456777777777766666888999999763 11111111122334788999999999987654
No 146
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.68 E-value=18 Score=24.21 Aligned_cols=43 Identities=19% Similarity=0.142 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 182 ~l~~~l~~~~~~~~~tii~~tH~~~--~~~~~~d~v~~l~-~G~i~ 224 (241)
T cd03256 182 QVMDLLKRINREEGITVIVSLHQVD--LAREYADRIVGLK-DGRIV 224 (241)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 4455566666655666655533221 1123556777776 67764
No 147
>PTZ00056 glutathione peroxidase; Provisional
Probab=62.35 E-value=43 Score=22.14 Aligned_cols=15 Identities=20% Similarity=0.556 Sum_probs=12.8
Q ss_pred EEEEECCCCCEEeee
Q 033342 102 THVLLDDAGNIRSTY 116 (121)
Q Consensus 102 s~~~i~~~G~i~~~y 116 (121)
+.++|+++|+++.+|
T Consensus 147 ~tflID~~G~iv~~~ 161 (199)
T PTZ00056 147 GKFLVNKSGNVVAYF 161 (199)
T ss_pred EEEEECCCCcEEEEe
Confidence 689999999998655
No 148
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=62.08 E-value=39 Score=22.64 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .- ...+..+++. +|+++
T Consensus 170 ~l~~~l~~~~~~~~~tiii~sH~~~--~~-~~~d~i~~l~-~G~i~ 211 (236)
T TIGR03864 170 AIVAHVRALCRDQGLSVLWATHLVD--EI-EADDRLVVLH-RGRVL 211 (236)
T ss_pred HHHHHHHHHHHhCCCEEEEEecChh--hH-hhCCEEEEEe-CCeEE
Confidence 4455566666555555555533221 11 1245666775 67764
No 149
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=61.80 E-value=35 Score=25.72 Aligned_cols=41 Identities=12% Similarity=0.313 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHcCcEE-EeccceeecC-CC----CceEEEEEEEC
Q 033342 67 GPIMQGYCSLARESSMWL-SLGGFQEKGS-DD----ARLCNTHVLLD 107 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~i-i~G~~~~~~~-~~----~~~~Ns~~~i~ 107 (121)
.+....|..+|++.++++ ++|...+.-. .+ .+...+.++|.
T Consensus 196 Re~t~~L~~~AK~~~i~~fiVGHVTKeG~IAGPrvLEHmVDtVlyFE 242 (456)
T COG1066 196 REVAAELMRLAKTKNIAIFIVGHVTKEGAIAGPRVLEHMVDTVLYFE 242 (456)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEEcccccccCchheeeeeeEEEEEe
Confidence 467788999999999887 5565444100 01 24667777774
No 150
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=61.44 E-value=37 Score=21.46 Aligned_cols=63 Identities=11% Similarity=-0.055 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.++-.+.+..+++++...+++++++.-... ...... .......-..+-+.++++|+++++.++
T Consensus 87 ~~~~~~~~~~~i~~i~~~~~~vil~~~~~~-~~~~~~--~~~~~~~~~~~n~~l~~~a~~~~v~~v 149 (185)
T cd01832 87 PDTYRADLEEAVRRLRAAGARVVVFTIPDP-AVLEPF--RRRVRARLAAYNAVIRAVAARYGAVHV 149 (185)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEecCCCc-cccchh--HHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 444455555555555567888887642211 011110 000000123466778888999887663
No 151
>PLN02380 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=61.42 E-value=28 Score=25.68 Aligned_cols=12 Identities=25% Similarity=0.022 Sum_probs=10.0
Q ss_pred CCcEEEccCCcc
Q 033342 38 GAKLLCFPENFS 49 (121)
Q Consensus 38 ~~dlvv~PE~~~ 49 (121)
+..+++|||..-
T Consensus 164 ~~wllIFPEGTR 175 (376)
T PLN02380 164 PFWLALFVEGTR 175 (376)
T ss_pred ccEEEEecCcCC
Confidence 456999999986
No 152
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=60.77 E-value=21 Score=23.63 Aligned_cols=43 Identities=19% Similarity=0.136 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 183 ~l~~~l~~~~~~~~~tii~~sH~~~--~~~~~~d~i~~l~-~G~i~ 225 (228)
T cd03257 183 QILDLLKKLQEELGLTLLFITHDLG--VVAKIADRVAVMY-AGKIV 225 (228)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhcCeEEEEe-CCEEE
Confidence 4455566666654555555533221 1123456677776 68764
No 153
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=60.48 E-value=60 Score=24.34 Aligned_cols=55 Identities=9% Similarity=0.112 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHC--CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 22 ANFATCSRLVKEAASA--GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 22 ~n~~~~~~~~~~a~~~--~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
-+.+.+++.+++|.+. ++++|+++--..++|.. .+.+.++.+.++|+++++.+|.
T Consensus 182 ~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~----------~s~e~l~~l~~~~~~~~i~lI~ 238 (447)
T PLN02607 182 VTPQALEAAYQEAEAANIRVRGVLITNPSNPLGAT----------VQRSVLEDILDFVVRKNIHLVS 238 (447)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcc----------cCHHHHHHHHHHHHHCCCEEEE
Confidence 3456666666666544 46677774333334432 3456677888888888887763
No 154
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=60.18 E-value=32 Score=22.14 Aligned_cols=42 Identities=21% Similarity=0.184 Sum_probs=28.2
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccc
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGF 89 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~ 89 (121)
+.++|--+++|||..- +. ...+..-...+|.+.++.|+.-.+
T Consensus 93 ~lk~g~~v~ifpeG~r--~~------------~~~~~~G~~~lA~~~~~pIvPv~i 134 (189)
T cd07983 93 ALKDGYNIAITPDGPR--GP------------RYKVKPGVILLARKSGAPIVPVAI 134 (189)
T ss_pred HHhCCCEEEEcCCCCC--Cc------------ceecchHHHHHHHHhCCCEEEEEE
Confidence 4456889999999853 21 113445567788899998865543
No 155
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=60.07 E-value=43 Score=21.43 Aligned_cols=62 Identities=16% Similarity=0.161 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEccCC--ccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 21 AANFATCSRLVKEAASAGAKLLCFPEN--FSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 21 ~~n~~~~~~~~~~a~~~~~dlvv~PE~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+..++.+.+.++.|+.-|++.++++=. ........+.... .-.+.++.+.+.|+++|+.+.+
T Consensus 67 ~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~----~~~~~l~~l~~~a~~~gv~i~l 130 (213)
T PF01261_consen 67 EEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWE----RLAENLRELAEIAEEYGVRIAL 130 (213)
T ss_dssp HHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHH----HHHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHH----HHHHHHHHHHhhhhhhcceEEE
Confidence 444888888888888889999888732 1101111111101 1224677788888899987754
No 156
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=59.81 E-value=21 Score=24.35 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+.+.+++++++..+++-+.... .-..+.+..+++. +|+++
T Consensus 190 l~~~l~~~~~~~~~tii~isH~~~--~~~~~~d~i~~l~-~g~i~ 231 (258)
T PRK11701 190 LLDLLRGLVRELGLAVVIVTHDLA--VARLLAHRLLVMK-QGRVV 231 (258)
T ss_pred HHHHHHHHHHhcCcEEEEEeCCHH--HHHHhcCEEEEEE-CCEEE
Confidence 344555556655666655543221 1123456677775 67764
No 157
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=59.42 E-value=28 Score=23.36 Aligned_cols=43 Identities=19% Similarity=0.184 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..++++ +|+++
T Consensus 183 ~l~~~l~~~~~~~~~tiii~tH~~~--~~~~~~d~v~~l~-~G~i~ 225 (243)
T TIGR02315 183 QVMDYLKRINKEDGITVIINLHQVD--LAKKYADRIVGLK-AGEIV 225 (243)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhcCeEEEEE-CCEEE
Confidence 3445556665555666655543321 1123456667775 67764
No 158
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=59.29 E-value=26 Score=23.11 Aligned_cols=42 Identities=12% Similarity=0.056 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-.. .+..+++. +|+++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~tH~~~--~~~~-~d~v~~l~-~G~i~ 220 (221)
T TIGR02211 179 IIFDLMLELNRELNTSFLVVTHDLE--LAKK-LDRVLEMK-DGQLF 220 (221)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHhh-cCEEEEEe-CCEec
Confidence 3445556665555655555533221 1122 46777776 67653
No 159
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=59.17 E-value=19 Score=26.10 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=34.3
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +-+ ........+.+.++.++.++.+++-+.... .--.+.+..++++ +|+++
T Consensus 152 ~~~P~llLLDEP~s--~LD--------~~~r~~l~~~L~~l~~~~g~tii~vTHd~~--ea~~~~Dri~vl~-~G~i~ 216 (353)
T PRK10851 152 AVEPQILLLDEPFG--ALD--------AQVRKELRRWLRQLHEELKFTSVFVTHDQE--EAMEVADRVVVMS-QGNIE 216 (353)
T ss_pred hcCCCEEEEeCCCc--cCC--------HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 45677777777553 111 111234566677777776766655532221 1123446666665 67664
No 160
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=58.75 E-value=34 Score=23.78 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHCCCc-EEEccCCc
Q 033342 23 NFATCSRLVKEAASAGAK-LLCFPENF 48 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~d-lvv~PE~~ 48 (121)
+.+...++.+.|.+.|+| +++.|-.+
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~ 106 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYY 106 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEccccc
Confidence 556778888888888999 56665544
No 161
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=58.62 E-value=31 Score=22.33 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=36.0
Q ss_pred EEEEEEeccc-----cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCc
Q 033342 8 RVAVAQMTSI-----NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSM 82 (121)
Q Consensus 8 ~ia~vQ~~~~-----~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~ 82 (121)
.+.++++-.- .+.++-.+.+..+++++.+.++++++++-. .+..+. ......+.+.++++|+++++
T Consensus 73 d~Vii~~GtND~~~~~~~~~~~~~l~~li~~~~~~~~~~ill~~~-~P~~~~--------~~~~~~~~~~~~~~a~~~~v 143 (191)
T PRK10528 73 RWVLVELGGNDGLRGFPPQQTEQTLRQIIQDVKAANAQPLLMQIR-LPANYG--------RRYNEAFSAIYPKLAKEFDI 143 (191)
T ss_pred CEEEEEeccCcCccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEee-cCCccc--------HHHHHHHHHHHHHHHHHhCC
Confidence 4455555331 234444555556666665667887776311 111111 01112345667888999987
Q ss_pred EEE
Q 033342 83 WLS 85 (121)
Q Consensus 83 ~ii 85 (121)
.++
T Consensus 144 ~~i 146 (191)
T PRK10528 144 PLL 146 (191)
T ss_pred Ccc
Confidence 764
No 162
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.45 E-value=25 Score=24.43 Aligned_cols=42 Identities=12% Similarity=0.213 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..|++-+.... .- ...+..+++. +|+++
T Consensus 181 ~l~~~l~~l~~~~g~tvli~tH~~~--~~-~~~d~i~~l~-~G~i~ 222 (282)
T PRK13640 181 QILKLIRKLKKKNNLTVISITHDID--EA-NMADQVLVLD-DGKLL 222 (282)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH--HH-HhCCEEEEEE-CCEEE
Confidence 4455666666665666655533221 11 2356666775 67764
No 163
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=58.31 E-value=37 Score=23.71 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHCCCc-EEEccCCc
Q 033342 23 NFATCSRLVKEAASAGAK-LLCFPENF 48 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~d-lvv~PE~~ 48 (121)
+.+...++.+.|.+.|+| +++.|-.+
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~y 104 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPYY 104 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCcC
Confidence 567788888888889999 55665444
No 164
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=57.92 E-value=25 Score=23.07 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 168 ~l~~~l~~~~~~~~~tii~~sH~~~--~~~~~~d~v~~l~-~G~i~ 210 (213)
T cd03259 168 ELREELKELQRELGITTIYVTHDQE--EALALADRIAVMN-EGRIV 210 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHH--HHHHhcCEEEEEE-CCEEE
Confidence 4455566666555666655533221 1123456667775 67664
No 165
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=57.91 E-value=38 Score=20.16 Aligned_cols=94 Identities=10% Similarity=0.036 Sum_probs=46.5
Q ss_pred EEEEEEecc-c-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 8 RVAVAQMTS-I-NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 8 ~ia~vQ~~~-~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
|+.++.+-. + ..+...+..+.++.++....+..+|...- ..+ ......+.+.++++++++..-
T Consensus 24 k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~----~~~-----------~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 24 KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS----PEF-----------AFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc----Ccc-----------ccccCHHHHHHHHHHcCCCCC
Confidence 344444432 2 44556666777766665555555554321 000 011224566777777766432
Q ss_pred eccceee---cCCCCceEEEEEEECCCCCEEeee
Q 033342 86 LGGFQEK---GSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 86 ~G~~~~~---~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
+.+-... ...+-..+-+.++|+++|+++..+
T Consensus 89 ~~~D~~~~~~~~~~v~~~P~~~vid~~G~v~~~~ 122 (126)
T cd03012 89 VANDNDYATWRAYGNQYWPALYLIDPTGNVRHVH 122 (126)
T ss_pred EEECCchHHHHHhCCCcCCeEEEECCCCcEEEEE
Confidence 1110100 001112356789999999986544
No 166
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.79 E-value=44 Score=22.98 Aligned_cols=42 Identities=5% Similarity=0.090 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..|++-+.... .-. ..+..++++ +|+++
T Consensus 180 ~l~~~L~~~~~~~~~tiiivtH~~~--~~~-~~d~i~~l~-~G~i~ 221 (269)
T PRK13648 180 NLLDLVRKVKSEHNITIISITHDLS--EAM-EADHVIVMN-KGTVY 221 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCch--HHh-cCCEEEEEE-CCEEE
Confidence 3444555555554555554432221 111 246666775 67764
No 167
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=57.67 E-value=58 Score=22.20 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 26 TCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 26 ~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
.+.++..++.+.|.+++|.--.++ -+.+..+.+.+.|++++..+.+++
T Consensus 49 ~H~e~a~~aL~aGkhVl~~s~gAl---------------ad~e~~~~l~~aA~~~g~~l~i~s 96 (229)
T TIGR03855 49 AVKEYAEKILKNGKDLLIMSVGAL---------------ADRELRERLREVARSSGRKVYIPS 96 (229)
T ss_pred HHHHHHHHHHHCCCCEEEECCccc---------------CCHHHHHHHHHHHHhcCCEEEECh
Confidence 345556666667777777222111 133557788889999888887774
No 168
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=57.57 E-value=13 Score=23.17 Aligned_cols=16 Identities=25% Similarity=0.544 Sum_probs=13.5
Q ss_pred EEEEECCCCCEEeeee
Q 033342 102 THVLLDDAGNIRSTYR 117 (121)
Q Consensus 102 s~~~i~~~G~i~~~y~ 117 (121)
+.++|+++|+++.+|.
T Consensus 125 ttflId~~G~i~~~~~ 140 (152)
T cd00340 125 TKFLVDRDGEVVKRFA 140 (152)
T ss_pred EEEEECCCCcEEEEEC
Confidence 7899999999987653
No 169
>PRK14014 putative acyltransferase; Provisional
Probab=57.55 E-value=17 Score=25.86 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 24 FATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 24 ~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.+.+..++..+.+.-+++|||..-
T Consensus 160 ~~~~~~a~~~~~~~~~~l~IFPEGTR 185 (301)
T PRK14014 160 LETTRRACEKFKRMPTTIVNFVEGTR 185 (301)
T ss_pred HHHHHHHHHHHhcCCcEEEEecccee
Confidence 33344444444456778999999975
No 170
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=57.45 E-value=28 Score=23.31 Aligned_cols=43 Identities=16% Similarity=0.061 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~~--~~~~~~d~v~~l~-~G~i~ 216 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDLD--TAFAIADRIAVLY-DGKIV 216 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHH--HHHHhcCEEEEEE-CCeEE
Confidence 3445566666555655555432220 1123456667775 67764
No 171
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=57.34 E-value=22 Score=24.49 Aligned_cols=43 Identities=5% Similarity=0.050 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..++++ +|+++
T Consensus 187 ~l~~~l~~~~~~~g~tviivsH~~~--~~~~~~d~i~~l~-~G~i~ 229 (267)
T PRK15112 187 QLINLMLELQEKQGISYIYVTQHLG--MMKHISDQVLVMH-QGEVV 229 (267)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCHH--HHHHhcCEEEEEE-CCEEE
Confidence 3445566666655665555432220 1123456677776 67664
No 172
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=57.24 E-value=24 Score=23.16 Aligned_cols=43 Identities=7% Similarity=0.109 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 168 ~l~~~l~~~~~~~~~tvi~~sH~~~--~~~~~~d~i~~l~-~g~~~ 210 (213)
T cd03301 168 QMRAELKRLQQRLGTTTIYVTHDQV--EAMTMADRIAVMN-DGQIQ 210 (213)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhcCeEEEEE-CCEEE
Confidence 3455566666655666655532220 1113446667775 67764
No 173
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=57.22 E-value=25 Score=23.80 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+....++++ +|+++
T Consensus 186 ~l~~~l~~~~~~~~~tii~vsH~~~--~~~~~~d~~~~l~-~G~i~ 228 (253)
T TIGR02323 186 RLLDLLRGLVRDLGLAVIIVTHDLG--VARLLAQRLLVMQ-QGRVV 228 (253)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhcCEEEEEE-CCEEE
Confidence 3445555665555666655533220 1112345556665 57664
No 174
>COG1603 RPP1 RNase P/RNase MRP subunit p30 [Translation, ribosomal structure and biogenesis]
Probab=57.18 E-value=35 Score=23.38 Aligned_cols=20 Identities=20% Similarity=0.291 Sum_probs=14.4
Q ss_pred HHHHHHHC-CCcEEEccCCcc
Q 033342 30 LVKEAASA-GAKLLCFPENFS 49 (121)
Q Consensus 30 ~~~~a~~~-~~dlvv~PE~~~ 49 (121)
..+.|... .+|++..||+.-
T Consensus 89 v~R~Av~~~rVDil~~p~~~r 109 (229)
T COG1603 89 VNRAAVENKRVDILSHPETGR 109 (229)
T ss_pred HHHHHHhccCccEEEcccccC
Confidence 34455554 499999999875
No 175
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=57.05 E-value=25 Score=24.38 Aligned_cols=42 Identities=7% Similarity=0.139 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .- ...+..++++ +|++.
T Consensus 178 ~l~~~l~~l~~~~g~tilivtH~~~--~~-~~~dri~~l~-~G~i~ 219 (279)
T PRK13650 178 ELIKTIKGIRDDYQMTVISITHDLD--EV-ALSDRVLVMK-NGQVE 219 (279)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH--HH-HhCCEEEEEE-CCEEE
Confidence 4555666666665666655533221 11 2456667775 67764
No 176
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=57.03 E-value=22 Score=25.87 Aligned_cols=64 Identities=14% Similarity=0.141 Sum_probs=33.0
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+++++++=|-+. + +.........+.+.++.++.++.+++-+.... +--.+-+..++++ +|+++
T Consensus 151 ~~P~llLLDEP~s--~--------LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~--ea~~l~D~i~vl~-~G~i~ 214 (356)
T PRK11650 151 REPAVFLFDEPLS--N--------LDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV--EAMTLADRVVVMN-GGVAE 214 (356)
T ss_pred cCCCEEEEeCCcc--c--------CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEe-CCEEE
Confidence 4677777777554 1 11111234556666777776776665543221 1112345556665 67664
No 177
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=56.96 E-value=28 Score=18.30 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 26 TCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 26 ~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
...+++++|++.|-+.+.+-|.....+ ...+.+.+++.++.++.|.
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~~~~-----------------~~~~~~~~~~~gi~~i~G~ 61 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGNLFG-----------------AVEFYKAAKKAGIKPIIGL 61 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCcccC-----------------HHHHHHHHHHcCCeEEEEE
Confidence 467888999999999999999875222 1244566677899998883
No 178
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.93 E-value=32 Score=23.41 Aligned_cols=18 Identities=11% Similarity=-0.020 Sum_probs=11.6
Q ss_pred HHHHHHHHcCcEEEeccc
Q 033342 72 GYCSLARESSMWLSLGGF 89 (121)
Q Consensus 72 ~l~~~a~~~~~~ii~G~~ 89 (121)
.+.+.|+++++.++.|.+
T Consensus 103 ~v~~~~~~~~i~~iPG~~ 120 (222)
T PRK07114 103 DIAKVCNRRKVPYSPGCG 120 (222)
T ss_pred HHHHHHHHcCCCEeCCCC
Confidence 455666677777777654
No 179
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=56.80 E-value=86 Score=23.91 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHH--CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 23 NFATCSRLVKEAAS--AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 23 n~~~~~~~~~~a~~--~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+.+.++...+.+.+ .++++|+++=-..++|.. .+.+.++.+.++|+++++.||.
T Consensus 182 ~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~----------~s~e~l~~L~~~a~~~~i~lI~ 237 (496)
T PLN02376 182 TVDAADWAYKKAQESNKKVKGLILTNPSNPLGTM----------LDKDTLTNLVRFVTRKNIHLVV 237 (496)
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCcc----------CCHHHHHHHHHHHHHcCCEEEE
Confidence 34455554444432 467878776323334432 3456677888888888887753
No 180
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=56.70 E-value=22 Score=22.50 Aligned_cols=69 Identities=12% Similarity=0.112 Sum_probs=36.2
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
+.+|...+++++++=|-+. +-+. .....+.+.+.+++++ +..+++-+.... .-..+.+..+++. +|
T Consensus 93 laral~~~p~illlDEP~~--~LD~--------~~~~~l~~~l~~~~~~-~~tiii~sh~~~--~~~~~~d~~~~l~-~g 158 (163)
T cd03216 93 IARALARNARLLILDEPTA--ALTP--------AEVERLFKVIRRLRAQ-GVAVIFISHRLD--EVFEIADRVTVLR-DG 158 (163)
T ss_pred HHHHHhcCCCEEEEECCCc--CCCH--------HHHHHHHHHHHHHHHC-CCEEEEEeCCHH--HHHHhCCEEEEEE-CC
Confidence 3345567899999988765 2111 1122344555555443 555544432221 1123456677775 67
Q ss_pred CEE
Q 033342 111 NIR 113 (121)
Q Consensus 111 ~i~ 113 (121)
++.
T Consensus 159 ~i~ 161 (163)
T cd03216 159 RVV 161 (163)
T ss_pred EEE
Confidence 764
No 181
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=56.69 E-value=66 Score=22.50 Aligned_cols=74 Identities=18% Similarity=0.175 Sum_probs=42.4
Q ss_pred HHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcC--cEEEeccceeecCCCCceEEEEEEEC
Q 033342 30 LVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESS--MWLSLGGFQEKGSDDARLCNTHVLLD 107 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~--~~ii~G~~~~~~~~~~~~~Ns~~~i~ 107 (121)
++.+|.-..++++++=|-+. |-+. .--..+++.+.+++...+ ..+++....+ +-...++-.+.+.
T Consensus 181 LiaRALv~~P~LLiLDEP~~--GLDl--------~~re~ll~~l~~~~~~~~~~~ll~VtHh~e---Ei~~~~th~lll~ 247 (257)
T COG1119 181 LIARALVKDPELLILDEPAQ--GLDL--------IAREQLLNRLEELAASPGAPALLFVTHHAE---EIPPCFTHRLLLK 247 (257)
T ss_pred HHHHHHhcCCCEEEecCccc--cCCh--------HHHHHHHHHHHHHhcCCCCceEEEEEcchh---hcccccceEEEee
Confidence 44556667889999999775 2211 011246677777776532 2333443333 3334677777776
Q ss_pred CCCCEEeeee
Q 033342 108 DAGNIRSTYR 117 (121)
Q Consensus 108 ~~G~i~~~y~ 117 (121)
+|+++..+.
T Consensus 248 -~g~v~~~g~ 256 (257)
T COG1119 248 -EGEVVAQGK 256 (257)
T ss_pred -CCceeeccc
Confidence 688866553
No 182
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=56.61 E-value=25 Score=24.16 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=32.6
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. |-+. .......+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 159 ~~~p~llllDEPt~--gLD~--------~~~~~l~~~L~~l~~~~~~tiii~tH~~~--~~~~~~d~i~~l~-~G~i~ 223 (265)
T PRK10253 159 AQETAIMLLDEPTT--WLDI--------SHQIDLLELLSELNREKGYTLAAVLHDLN--QACRYASHLIALR-EGKIV 223 (265)
T ss_pred hcCCCEEEEeCccc--cCCH--------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 45677777776553 2111 01123455666666555655555432220 1123456667775 67664
No 183
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=56.57 E-value=27 Score=23.47 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-....+..++++ +|++.
T Consensus 174 ~l~~~l~~~~~~~~~tvii~sH~~~--~~~~~~d~i~~l~-~G~i~ 216 (239)
T cd03296 174 ELRRWLRRLHDELHVTTVFVTHDQE--EALEVADRVVVMN-KGRIE 216 (239)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCeEE
Confidence 3455566666655655555432221 1123445666775 67764
No 184
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=56.33 E-value=15 Score=24.29 Aligned_cols=51 Identities=16% Similarity=0.091 Sum_probs=27.7
Q ss_pred HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.++.++|-.+++|||..-.......+ . .....+...-+..+|.++++.|+.
T Consensus 83 ~~~L~~G~~l~ifPeGtr~~~~~~~~--~--~~~~~~~~~G~~~lA~~~~~pIvP 133 (212)
T cd07987 83 VRLLREGELVLIFPGGAREALKSKRE--E--YYLLWKKRKGFARLALRAGAPIVP 133 (212)
T ss_pred HHHhcCCCEEEEEcCCHHHHhccCCC--e--EEEEECCCcCHHHHHHHcCCCeEe
Confidence 33446788999999997511100000 0 000112344566778888887743
No 185
>PRK11756 exonuclease III; Provisional
Probab=56.32 E-value=33 Score=23.47 Aligned_cols=24 Identities=4% Similarity=0.061 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.++++.+.++ +.++|||+|.|+..
T Consensus 14 ~~~~i~~~i~---~~~pDIi~LQE~~~ 37 (268)
T PRK11756 14 RPHQLEAIIE---KHQPDVIGLQETKV 37 (268)
T ss_pred HHHHHHHHHH---hcCCCEEEEEeccc
Confidence 3444555554 56899999999754
No 186
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=56.11 E-value=40 Score=23.36 Aligned_cols=42 Identities=10% Similarity=0.221 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-.. ....++++ +|+++
T Consensus 182 ~l~~~l~~l~~~~g~tillvtH~~~--~~~~-~d~v~~l~-~G~i~ 223 (280)
T PRK13633 182 EVVNTIKELNKKYGITIILITHYME--EAVE-ADRIIVMD-SGKVV 223 (280)
T ss_pred HHHHHHHHHHHhcCCEEEEEecChH--HHhc-CCEEEEEE-CCEEE
Confidence 4455566666655666655533221 1112 45667775 67664
No 187
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=56.11 E-value=28 Score=23.56 Aligned_cols=43 Identities=16% Similarity=0.177 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..++++ +|+++
T Consensus 184 ~l~~~l~~~~~~~~~tiiivsH~~~--~~~~~~d~i~~l~-~G~i~ 226 (252)
T TIGR03005 184 EVLNVIRRLASEHDLTMLLVTHEMG--FAREFADRVCFFD-KGRIV 226 (252)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHH--HHHHhcCEEEEEE-CCEEE
Confidence 4455566666655665555533221 1113456667775 67764
No 188
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=56.07 E-value=23 Score=25.47 Aligned_cols=43 Identities=21% Similarity=0.336 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..++++ +|+++
T Consensus 178 ~l~~~L~~l~~~~g~tiilvtH~~~--~i~~~~d~v~~l~-~G~i~ 220 (343)
T PRK11153 178 SILELLKDINRELGLTIVLITHEMD--VVKRICDRVAVID-AGRLV 220 (343)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 4555666666665666655543221 1123456666775 67664
No 189
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=55.94 E-value=27 Score=23.92 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++.++.+..|++-+.... .-..+.+..++++ +|+++
T Consensus 188 ~l~~~l~~~~~~~g~tiiivsH~~~--~~~~~~d~i~~l~-~G~i~ 230 (265)
T TIGR02769 188 VILELLRKLQQAFGTAYLFITHDLR--LVQSFCQRVAVMD-KGQIV 230 (265)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHH--HHHHHhcEEEEEe-CCEEE
Confidence 3456666666655656655533221 1113456667775 67664
No 190
>PF02595 Gly_kinase: Glycerate kinase family; InterPro: IPR004381 This family includes glycerate kinase 2 (2.7.1.31 from EC), which catalyses the phosphorylation of (R)-glycerate to 3-phospho-(R)-glycerate in the presence of ATP. These proteins consist of two different alpha/beta domains: domain 1 has a flavodoxin-like fold, while domain 2 has a restriction enzyme-like fold (domain 2 is inserted into domain 1).; GO: 0008887 glycerate kinase activity, 0031388 organic acid phosphorylation; PDB: 3CWC_B 1TO6_A.
Probab=55.83 E-value=8.4 Score=28.35 Aligned_cols=43 Identities=23% Similarity=0.257 Sum_probs=27.2
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE--Eeccce
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL--SLGGFQ 90 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i--i~G~~~ 90 (121)
.++|+|+.-|..+ ..++..+.....+.++|+++++++ +.|...
T Consensus 283 ~~aDlVITGEG~~-----------D~Qtl~GK~p~~Va~~A~~~~vPviav~G~~~ 327 (377)
T PF02595_consen 283 EDADLVITGEGRL-----------DAQTLAGKVPGGVARLAKKHGVPVIAVAGSVD 327 (377)
T ss_dssp CC-SEEEE--CEC-----------STTTTTTCHHHHHHCCHCCTT--EEEEECEC-
T ss_pred cCCCEEEECcccc-----------ccccCCCcHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 5799999999987 122356777888899999888665 566543
No 191
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=55.81 E-value=63 Score=21.99 Aligned_cols=63 Identities=8% Similarity=-0.065 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+...+.+.+.++.|..-|+..|+.+=.....++..++.. + .-.+.+..+.+.|+++|+.+.+
T Consensus 80 ~~~~~~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~---~-~~~~~l~~l~~~a~~~Gv~l~l 142 (258)
T PRK09997 80 EEEFRDGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIH---A-TLVENLRYAANMLMKEDILLLI 142 (258)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHH---H-HHHHHHHHHHHHHHHcCCEEEE
Confidence 3455677888888888889998765322211111111110 0 1123456667777888887644
No 192
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=55.65 E-value=24 Score=23.97 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|++.
T Consensus 178 ~l~~~L~~~~~~~g~til~~sH~~~--~~~~~~d~v~~l~-~G~i~ 220 (254)
T PRK10418 178 RILDLLESIVQKRALGMLLVTHDMG--VVARLADDVAVMS-HGRIV 220 (254)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3455666666665666655532220 1112345566665 67664
No 193
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.49 E-value=29 Score=24.00 Aligned_cols=43 Identities=14% Similarity=0.131 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++.++.+..+++-+.... .-.+.-+..+++. +|+++
T Consensus 175 ~l~~~l~~l~~~~g~tvli~tH~~~--~~~~~~drv~~l~-~G~i~ 217 (277)
T PRK13652 175 ELIDFLNDLPETYGMTVIFSTHQLD--LVPEMADYIYVMD-KGRIV 217 (277)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH--HHHHhCCEEEEEE-CCeEE
Confidence 4455566666655666655532220 1113456666775 67664
No 194
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=55.45 E-value=27 Score=23.34 Aligned_cols=43 Identities=16% Similarity=0.110 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..++++ +|++.
T Consensus 163 ~l~~~l~~~~~~~~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~ 205 (230)
T TIGR02770 163 RVLKLLRELRQLFGTGILLITHDLG--VVARIADEVAVMD-DGRIV 205 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3455566666655655554432220 1123456667775 67764
No 195
>PRK08960 hypothetical protein; Provisional
Probab=55.39 E-value=47 Score=24.01 Aligned_cols=42 Identities=12% Similarity=0.014 Sum_probs=26.3
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
..+..+++++--..++|.. .+.+.+..+.++|+++++.++.=
T Consensus 163 ~~~~~~i~i~~p~NPtG~~----------~~~~~~~~l~~~~~~~~~~li~D 204 (387)
T PRK08960 163 NADTVGALVASPANPTGTL----------LSRDELAALSQALRARGGHLVVD 204 (387)
T ss_pred CccceEEEEECCCCCCCcC----------cCHHHHHHHHHHHHHcCCEEEEE
Confidence 3456666665444444543 23456778888899998877543
No 196
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=55.19 E-value=26 Score=23.76 Aligned_cols=64 Identities=13% Similarity=0.065 Sum_probs=31.6
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+++++++=|-+. +-+. .....+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|++.
T Consensus 170 ~~p~llllDEPt~--~LD~--------~~~~~l~~~L~~~~~~~~~tii~~sH~~~--~~~~~~d~i~~l~-~g~i~ 233 (255)
T PRK11300 170 TQPEILMLDEPAA--GLNP--------KETKELDELIAELRNEHNVTVLLIEHDMK--LVMGISDRIYVVN-QGTPL 233 (255)
T ss_pred cCCCEEEEcCCcc--CCCH--------HHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCeEE
Confidence 4667777777553 1110 01123445555665555666655533221 1113445666775 67764
No 197
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.80 E-value=38 Score=22.78 Aligned_cols=16 Identities=31% Similarity=0.432 Sum_probs=10.6
Q ss_pred HHHHHHHCCCcEEEcc
Q 033342 30 LVKEAASAGAKLLCFP 45 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~P 45 (121)
.+++|.+.|++++|-|
T Consensus 80 ~~~~a~~aGA~FivsP 95 (213)
T PRK06552 80 TARLAILAGAQFIVSP 95 (213)
T ss_pred HHHHHHHcCCCEEECC
Confidence 3455666778887766
No 198
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=54.62 E-value=66 Score=21.90 Aligned_cols=77 Identities=10% Similarity=0.151 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEE
Q 033342 24 FATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTH 103 (121)
Q Consensus 24 ~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~ 103 (121)
++.+.+.+++++ +++|+||.-=-| |.. +.. ...+....+...+.+.|+-+|+|.-+-. -.+-..|+..
T Consensus 170 ~~~i~~~i~~~r-~~~D~vIv~~Hw---G~e------~~~-~p~~~q~~~a~~lidaGaDiIiG~HpHv-~q~~E~y~~~ 237 (250)
T PF09587_consen 170 IERIKEDIREAR-KKADVVIVSLHW---GIE------YEN-YPTPEQRELARALIDAGADIIIGHHPHV-IQPVEIYKGK 237 (250)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEecc---CCC------CCC-CCCHHHHHHHHHHHHcCCCEEEeCCCCc-ccceEEECCE
Confidence 378888888886 789998763222 221 111 2334455566656667888888975532 1333455444
Q ss_pred EEECCCCCE
Q 033342 104 VLLDDAGNI 112 (121)
Q Consensus 104 ~~i~~~G~i 112 (121)
+++-.=|..
T Consensus 238 ~I~YSLGNf 246 (250)
T PF09587_consen 238 PIFYSLGNF 246 (250)
T ss_pred EEEEeCccc
Confidence 333223443
No 199
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.62 E-value=33 Score=22.88 Aligned_cols=44 Identities=16% Similarity=0.296 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++.
T Consensus 178 ~l~~~l~~~~~~~~~tvii~sH~~~--~~~~~~d~i~~l~-~G~i~~ 221 (233)
T cd03258 178 SILALLRDINRELGLTIVLITHEME--VVKRICDRVAVME-KGEVVE 221 (233)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEEE
Confidence 3445556666655655655533221 1123456667775 687653
No 200
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=54.61 E-value=50 Score=23.94 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=26.7
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
.++++|+++--..++|.. .+.+.++.+.++|++++++|+.=
T Consensus 164 ~~~k~i~l~~p~NPtG~~----------~s~~~~~~l~~~a~~~~~~ii~D 204 (393)
T TIGR03538 164 RRCQLLFVCSPGNPTGAV----------LSLDTLKKLIELADQYGFIIASD 204 (393)
T ss_pred hcceEEEEeCCCCCcCcc----------cCHHHHHHHHHHHHHCCEEEEEC
Confidence 467888876333344432 34456788888899999877643
No 201
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=54.61 E-value=27 Score=25.06 Aligned_cols=44 Identities=20% Similarity=0.184 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
.+.+.|.++.++.+..+++-+.... .-..+-+..+++. +|+++.
T Consensus 199 ~i~~lL~~l~~~~g~til~iTHdl~--~~~~~~Dri~vm~-~G~ive 242 (330)
T PRK09473 199 QIMTLLNELKREFNTAIIMITHDLG--VVAGICDKVLVMY-AGRTME 242 (330)
T ss_pred HHHHHHHHHHHHcCCEEEEEECCHH--HHHHhCCEEEEEE-CCEEEE
Confidence 5556677777776776765542220 1113456667775 687754
No 202
>PRK15447 putative protease; Provisional
Probab=54.32 E-value=53 Score=23.26 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=24.1
Q ss_pred cEEEEEEeccc-cCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 7 VRVAVAQMTSI-NDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 7 ~~ia~vQ~~~~-~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
+++|.++.+.+ ++ ++.+....++.|||-|.++|-..
T Consensus 3 ~~~~~~~~~~p~~~-------~~~~~~~~~~~gaDaVY~g~~~~ 39 (301)
T PRK15447 3 LSLGPVLYYWPKET-------VRDFYQRAADSPVDIVYLGETVC 39 (301)
T ss_pred ccccccccCCCCCC-------HHHHHHHHHcCCCCEEEECCccC
Confidence 56777777765 43 33444545567999999998553
No 203
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.16 E-value=33 Score=23.06 Aligned_cols=43 Identities=14% Similarity=0.230 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~~--~~~~~~d~i~~l~-~G~i~ 215 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDID--EAFRLADRIAIMK-NGEIV 215 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3445566666554555555433221 1123456667775 67764
No 204
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=54.14 E-value=32 Score=22.00 Aligned_cols=68 Identities=21% Similarity=0.125 Sum_probs=35.5
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i 112 (121)
+|...+++++++=|-+. +.+. .....+.+.+.++.++.+..+++-+.... .-....+..+++. +|++
T Consensus 110 ral~~~p~llllDEP~~--~LD~--------~~~~~~~~~l~~~~~~~~~tiii~sh~~~--~~~~~~d~~~~l~-~g~i 176 (180)
T cd03214 110 RALAQEPPILLLDEPTS--HLDI--------AHQIELLELLRRLARERGKTVVMVLHDLN--LAARYADRVILLK-DGRI 176 (180)
T ss_pred HHHhcCCCEEEEeCCcc--CCCH--------HHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEE
Confidence 34556889999988664 2111 11123445555555553555544432220 1123556777776 6766
Q ss_pred E
Q 033342 113 R 113 (121)
Q Consensus 113 ~ 113 (121)
.
T Consensus 177 ~ 177 (180)
T cd03214 177 V 177 (180)
T ss_pred E
Confidence 4
No 205
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=54.09 E-value=31 Score=22.90 Aligned_cols=42 Identities=24% Similarity=0.232 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .- ...+..+++. +|+++
T Consensus 184 ~l~~~l~~~~~~~~~tii~~sH~~~--~~-~~~d~i~~l~-~g~i~ 225 (228)
T PRK10584 184 KIADLLFSLNREHGTTLILVTHDLQ--LA-ARCDRRLRLV-NGQLQ 225 (228)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH--HH-HhCCEEEEEE-CCEEE
Confidence 3445556665665666655533221 11 1245566675 67663
No 206
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=53.98 E-value=26 Score=24.15 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
...+.+.+++++.+..+++-+.... .-..+.+..+++. +|++.
T Consensus 189 ~~~~~l~~~~~~~~~tiiivsH~~~--~i~~~~d~i~~l~-~G~i~ 231 (268)
T PRK10419 189 GVIRLLKKLQQQFGTACLFITHDLR--LVERFCQRVMVMD-NGQIV 231 (268)
T ss_pred HHHHHHHHHHHHcCcEEEEEECCHH--HHHHhCCEEEEEE-CCEEe
Confidence 3556666776665665555432220 1113456666675 56653
No 207
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=53.97 E-value=21 Score=23.60 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=15.2
Q ss_pred HHHHHHHHHH--CCCcEEEccCCcc
Q 033342 27 CSRLVKEAAS--AGAKLLCFPENFS 49 (121)
Q Consensus 27 ~~~~~~~a~~--~~~dlvv~PE~~~ 49 (121)
..+.+.+..+ ++-.+++|||...
T Consensus 84 ~~~~~~~~~~~~~g~~v~iFPEGtr 108 (211)
T cd07991 84 VVEEIKERATDPNWPPILIFPEGTT 108 (211)
T ss_pred HHHHHHHHHhCCCCCeEEEecCccc
Confidence 3334443333 4688999999986
No 208
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=53.85 E-value=25 Score=25.88 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=33.3
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +-+ ........+.+.++.++.+..+++-+.... .--++-+..+++. +|+++
T Consensus 180 a~~P~ILLlDEPts--~LD--------~~~r~~l~~~L~~l~~~~~~TII~iTHdl~--e~~~l~DrI~vl~-~G~iv 244 (382)
T TIGR03415 180 AMDADILLMDEPFS--ALD--------PLIRTQLQDELLELQAKLNKTIIFVSHDLD--EALKIGNRIAIME-GGRII 244 (382)
T ss_pred hcCCCEEEEECCCc--cCC--------HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34667777777554 111 111234556666666666666655543221 1123445666665 67664
No 209
>PF04167 DUF402: Protein of unknown function (DUF402); InterPro: IPR007295 This beta barrel domain is found in FomD, which is a predicted protein from a fosfomycin biosynthesis gene cluster in Streptomyces wedmorensis []. Its function is unknown.; PDB: 3EXM_A 3CBT_A 2P12_A.
Probab=53.74 E-value=14 Score=20.11 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=17.0
Q ss_pred CceEEEEEEECCCCCEEeeee
Q 033342 97 ARLCNTHVLLDDAGNIRSTYR 117 (121)
Q Consensus 97 ~~~~Ns~~~i~~~G~i~~~y~ 117 (121)
++.||...+++++|+..+.|-
T Consensus 14 ~~~~~v~~~~~~~~~~~~~Yv 34 (72)
T PF04167_consen 14 GRWYNVTVYFDPDGRFKGWYV 34 (72)
T ss_dssp CCTEEEEEEEETTTECECEEE
T ss_pred CCCEEEEEEECCCCcEEEEEE
Confidence 468999999998888877774
No 210
>PRK12677 xylose isomerase; Provisional
Probab=53.53 E-value=89 Score=23.09 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHCCCc-EEEccC
Q 033342 21 AANFATCSRLVKEAASAGAK-LLCFPE 46 (121)
Q Consensus 21 ~~n~~~~~~~~~~a~~~~~d-lvv~PE 46 (121)
+..++.+.+.++.|.+-|++ +++||=
T Consensus 110 ~~Ai~~~~r~IdlA~eLGa~~Vvv~~G 136 (384)
T PRK12677 110 RYALRKVLRNIDLAAELGAKTYVMWGG 136 (384)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeC
Confidence 44578888899989888998 556644
No 211
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=53.39 E-value=56 Score=23.72 Aligned_cols=40 Identities=15% Similarity=0.026 Sum_probs=26.9
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.++++++++--..++|.. .+.+.++.+.++|++++++|+.
T Consensus 165 ~~~k~i~l~nP~NPTG~~----------~s~~~~~~l~~~a~~~~~~ii~ 204 (396)
T PRK09147 165 ARTQLLFVCSPGNPTGAV----------LPLDDWKKLFALSDRYGFVIAS 204 (396)
T ss_pred hccEEEEEcCCCCCcCcc----------CCHHHHHHHHHHHHHcCeEEEe
Confidence 467888886333344432 3445678888899999988864
No 212
>PRK06348 aspartate aminotransferase; Provisional
Probab=53.37 E-value=55 Score=23.67 Aligned_cols=41 Identities=10% Similarity=0.162 Sum_probs=25.8
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
..++++|+++--..++|.. .+.+.++.+.++|+++++.|+.
T Consensus 160 ~~~~~~v~l~~p~NPtG~~----------~s~~~~~~l~~~a~~~~~~ii~ 200 (384)
T PRK06348 160 TSKTKAIILNSPNNPTGAV----------FSKETLEEIAKIAIEYDLFIIS 200 (384)
T ss_pred CcCccEEEEeCCCCCCCcC----------CCHHHHHHHHHHHHHCCeEEEE
Confidence 3467777775323333332 2345678888999999988763
No 213
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=53.28 E-value=39 Score=22.25 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++.++.+..+++-+.... .-..+.+..+++. +|++.
T Consensus 166 ~~~~~l~~~~~~~~~tii~vsh~~~--~~~~~~d~v~~l~-~g~i~ 208 (213)
T TIGR01277 166 EMLALVKQLCSERQRTLLMVTHHLS--DARAIASQIAVVS-QGKIK 208 (213)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHhhcCeEEEEE-CCeEE
Confidence 4455566666655665555432221 1113445667775 67764
No 214
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=53.23 E-value=28 Score=24.87 Aligned_cols=43 Identities=5% Similarity=0.172 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++.++.+..+++-+.... .-..+.+..++++ +|++.
T Consensus 138 ~l~~~l~~l~~~~g~tiiivTHd~~--e~~~~~d~i~vl~-~G~i~ 180 (325)
T TIGR01187 138 QMQLELKTIQEQLGITFVFVTHDQE--EAMTMSDRIAIMR-KGKIA 180 (325)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 4455566666666666655432220 1113345566665 67664
No 215
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=53.20 E-value=41 Score=22.07 Aligned_cols=19 Identities=16% Similarity=0.263 Sum_probs=14.9
Q ss_pred CceEEEEEEECCCCCEEee
Q 033342 97 ARLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 97 ~~~~Ns~~~i~~~G~i~~~ 115 (121)
+..|-++++|+|+|.+...
T Consensus 124 g~~~r~~fiID~~G~i~~~ 142 (199)
T PTZ00253 124 GVAYRGLFIIDPKGMLRQI 142 (199)
T ss_pred CceEEEEEEECCCCEEEEE
Confidence 4467899999999987643
No 216
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.16 E-value=38 Score=23.47 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++++..+++-+.... .- ..-+..+++. +|+++
T Consensus 178 ~l~~~l~~l~~~~g~tiil~sH~~~--~~-~~~d~i~~l~-~G~i~ 219 (277)
T PRK13642 178 EIMRVIHEIKEKYQLTVLSITHDLD--EA-ASSDRILVMK-AGEII 219 (277)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HH-HhCCEEEEEE-CCEEE
Confidence 4555666666666766655533321 11 1245667775 67664
No 217
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=53.09 E-value=33 Score=23.55 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-.++-+..++++ +|+++
T Consensus 185 ~~~~~l~~l~~~~~~tiii~sH~~~--~i~~~~d~i~~l~-~G~i~ 227 (265)
T PRK10575 185 DVLALVHRLSQERGLTVIAVLHDIN--MAARYCDYLVALR-GGEMI 227 (265)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCeEE
Confidence 3455566666655665555432220 1113445666775 67764
No 218
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=53.06 E-value=36 Score=22.41 Aligned_cols=40 Identities=13% Similarity=0.150 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN 111 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~ 111 (121)
.+.+.+.+++++.+..+++-+.... .- ...+..+++. +|+
T Consensus 178 ~l~~~l~~~~~~~~~tii~~sH~~~--~~-~~~d~v~~l~-~G~ 217 (218)
T cd03255 178 EVMELLRELNKEAGTTIVVVTHDPE--LA-EYADRIIELR-DGK 217 (218)
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHH--HH-hhhcEEEEee-CCc
Confidence 4455556665544555555533321 22 2456666665 564
No 219
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=52.99 E-value=28 Score=25.28 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=33.5
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
.+++++++=|-+. + +.........+.+.++.++.++.+++-+.... +--.+-...++++ +|+++.
T Consensus 151 ~~P~llLLDEP~s--~--------LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~--ea~~l~d~i~vl~-~G~i~~ 215 (353)
T TIGR03265 151 TSPGLLLLDEPLS--A--------LDARVREHLRTEIRQLQRRLGVTTIMVTHDQE--EALSMADRIVVMN-HGVIEQ 215 (353)
T ss_pred cCCCEEEEcCCcc--c--------CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHHhCCEEEEEE-CCEEEE
Confidence 4567777766553 1 11111234555666666677777665543221 1123445566665 676653
No 220
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=52.96 E-value=59 Score=22.67 Aligned_cols=18 Identities=11% Similarity=-0.134 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHcCcEEE
Q 033342 68 PIMQGYCSLARESSMWLS 85 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii 85 (121)
+..+.+.+.++++|+..+
T Consensus 131 ee~~~~~~~~~~~gi~~I 148 (263)
T CHL00200 131 EESDYLISVCNLYNIELI 148 (263)
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 345556666677765553
No 221
>PTZ00376 aspartate aminotransferase; Provisional
Probab=52.58 E-value=50 Score=24.14 Aligned_cols=51 Identities=10% Similarity=0.082 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 24 FATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 24 ~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
++.+.+.+++. ..+..+++.|--..++|... +.+.++.+.++|++++++|+
T Consensus 163 ~~~l~~~~~~~-~~~~~~~~~~~p~NPTG~~~----------s~~~~~~l~~~a~~~~~~ii 213 (404)
T PTZ00376 163 FDGMLEDLRTA-PNGSVVLLHACAHNPTGVDP----------TEEQWKEIADVMKRKNLIPF 213 (404)
T ss_pred HHHHHHHHHhC-CCCCEEEEeCCCCCCCCCCC----------CHHHHHHHHHHHHhCCcEEE
Confidence 44444444322 22345677787777666542 33455666677777776664
No 222
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=52.50 E-value=29 Score=25.18 Aligned_cols=44 Identities=9% Similarity=0.159 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
...+.+.++.++.++.+++-+.... +--.+-+..++++ +|++..
T Consensus 174 ~l~~~l~~l~~~~g~tii~vTHd~~--e~~~laD~i~vm~-~G~i~~ 217 (351)
T PRK11432 174 SMREKIRELQQQFNITSLYVTHDQS--EAFAVSDTVIVMN-KGKIMQ 217 (351)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHH--HHHHhCCEEEEEE-CCEEEE
Confidence 4555666666666766655543221 1123446666775 676643
No 223
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=52.46 E-value=28 Score=23.40 Aligned_cols=43 Identities=21% Similarity=0.172 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..|++-+.... .-..+....+++. +|++.
T Consensus 191 ~l~~~l~~~~~~~~~tiiivsH~~~--~~~~~~d~i~~l~-~G~i~ 233 (236)
T cd03267 191 NIRNFLKEYNRERGTTVLLTSHYMK--DIEALARRVLVID-KGRLL 233 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCHH--HHHHhCCEEEEEe-CCEEE
Confidence 3444555555554556655533221 1123445666675 67663
No 224
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=52.29 E-value=56 Score=20.35 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 19 DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 19 ~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
+.+.-.+.+.++++.+.+.++++|+..=... ..+. ......+.+.++++|+++++.++
T Consensus 82 ~~~~~~~~l~~li~~~~~~~~~vil~~~~~~-~~~~--------~~~~~~~~~~~~~~a~~~~~~~~ 139 (177)
T cd01822 82 PPDQTRANLRQMIETAQARGAPVLLVGMQAP-PNYG--------PRYTRRFAAIYPELAEEYGVPLV 139 (177)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEecCCC-Cccc--------hHHHHHHHHHHHHHHHHcCCcEe
Confidence 3455556666666666666888887521000 1110 01123566778889999988664
No 225
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=52.26 E-value=44 Score=19.20 Aligned_cols=46 Identities=7% Similarity=-0.086 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
+-++.+.+.+++.++.+..+ ..... ..+ -...+++.+|+|..+..+
T Consensus 70 ~~l~~~~~~l~~~G~~~~~~-~~~~~-~~~-~~~~~~~~DP~G~~iel~ 115 (120)
T cd08362 70 ADVDALARQVAARGGTVLSE-PGATD-DPG-GGYGFRFFDPDGRLIEFS 115 (120)
T ss_pred HHHHHHHHHHHHcCCceecC-CcccC-CCC-CceEEEEECCCCCEEEEE
Confidence 45666667677788877544 21111 111 234678999999887654
No 226
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=52.21 E-value=35 Score=23.46 Aligned_cols=38 Identities=13% Similarity=0.245 Sum_probs=22.5
Q ss_pred cEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 7 VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 7 ~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
|||+....|.-- .-.++ .+..-..+.++|+|++.|+-.
T Consensus 1 mki~swNVNgir---~~~~~--~~~~~l~~~~~DIiclQEtK~ 38 (250)
T PRK13911 1 MKLISWNVNGLR---ACMTK--GFMDFFNSVDADVFCIQESKM 38 (250)
T ss_pred CEEEEEEeCChh---Hhhhh--hHHHHHHhcCCCEEEEEeecc
Confidence 466666666421 11111 233334467999999999986
No 227
>KOG1505 consensus Lysophosphatidic acid acyltransferase LPAAT and related acyltransferases [Lipid transport and metabolism]
Probab=52.20 E-value=23 Score=25.79 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.+..+..+.. ...-.|++|||..-
T Consensus 137 ~l~~~~k~l~~~-~~~~wLlLFPEGT~ 162 (346)
T KOG1505|consen 137 TLISLLKHLKDS-PDPYWLLLFPEGTR 162 (346)
T ss_pred HHHHHHHHhccC-CCceEEEEecCCCc
Confidence 344444444433 33467999999984
No 228
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=52.17 E-value=32 Score=24.88 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
...+.+.+++++.+..+++-+.... .-..+-+..++++ +|+++
T Consensus 166 ~l~~~L~~l~~~~g~tii~vTHd~~--~~~~~~d~i~~l~-~G~i~ 208 (352)
T PRK11144 166 ELLPYLERLAREINIPILYVSHSLD--EILRLADRVVVLE-QGKVK 208 (352)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHH--HHHHhCCEEEEEe-CCEEE
Confidence 4455566666666665555432220 1112345556665 56654
No 229
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=52.00 E-value=17 Score=22.60 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=22.6
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccC
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPE 46 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE 46 (121)
......+..+.++.++....++.+|-++-
T Consensus 35 ~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 35 GFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 55677788888888887777888888874
No 230
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=51.89 E-value=30 Score=24.76 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 67 GPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+.+.|.++.++.++.+++-+.... .-..+-+..+++. +|+++
T Consensus 195 ~~i~~lL~~l~~~~g~tii~itHdl~--~v~~~~dri~vm~-~G~iv 238 (330)
T PRK15093 195 AQIFRLLTRLNQNNNTTILLISHDLQ--MLSQWADKINVLY-CGQTV 238 (330)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHH--HHHHhCCEEEEEE-CCEEE
Confidence 35566677776666777765543210 1112345556664 57664
No 231
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=51.77 E-value=38 Score=23.72 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=22.8
Q ss_pred cEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 7 VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 7 ~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
|||+....|. +..-+.++.+.+. +..+|+|++.|+=.
T Consensus 1 mkI~SwNVNg---iRar~~~~~~~l~---~~~pDVlclQEtK~ 37 (261)
T COG0708 1 MKIASWNVNG---LRARLKKLLDWLE---EEQPDVLCLQETKA 37 (261)
T ss_pred CeeEEEehhh---HHHHHHHHHHHHH---HhCCCEEEEEeccc
Confidence 4555555553 3333444445544 46789999999865
No 232
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=51.69 E-value=22 Score=23.73 Aligned_cols=51 Identities=25% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 25 ATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 25 ~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
+.+...++...+.|--+++|||.....+.. ...+.......+|.+.+++++
T Consensus 125 ~~~~~~~~~~~~~g~~l~iFPEGtr~~~~~----------~~~~~k~g~~~~a~~~~~Piv 175 (255)
T COG0204 125 ETLRAAVARLKAGGRSLVIFPEGTRSRGGE----------ELLPFKRGAARLALEAGVPIV 175 (255)
T ss_pred HHHHHHHHHHHhCCcEEEECCCcCcCCCcc----------ccCCCcchHHHHHHHcCCCEE
Confidence 344555555556689999999998732211 011233345566667776553
No 233
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=51.60 E-value=57 Score=23.33 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=26.0
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
..++++|+++--..++|.. .+.+.++.+.++|++++++|+.=
T Consensus 140 ~~~~k~v~l~~p~NPTG~~----------~~~~~~~~i~~~a~~~~~~ii~D 181 (356)
T PRK08056 140 TPDLDCLFLCTPNNPTGLL----------PERQLLQAIAERCKSLNIALILD 181 (356)
T ss_pred cCCCCEEEEeCCcCCCCCC----------CCHHHHHHHHHHHHhcCCEEEEe
Confidence 3566777775444444432 23345677888888888877643
No 234
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=51.56 E-value=32 Score=23.92 Aligned_cols=43 Identities=12% Similarity=0.233 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..|++-+.... .-..+.+..+++. +|+++
T Consensus 179 ~l~~~l~~l~~~~g~tillvsH~~~--~~~~~~dri~~l~-~G~i~ 221 (283)
T PRK13636 179 EIMKLLVEMQKELGLTIIIATHDID--IVPLYCDNVFVMK-EGRVI 221 (283)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3445666676665666655532220 1113445666775 67664
No 235
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=51.45 E-value=61 Score=23.05 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHCCCc-EEEccCCc
Q 033342 23 NFATCSRLVKEAASAGAK-LLCFPENF 48 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~d-lvv~PE~~ 48 (121)
+.+...++.+.|.+.|+| +++.|-..
T Consensus 88 ~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 88 NTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred CHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 556777888888888998 56666543
No 236
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=51.31 E-value=33 Score=24.80 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+-+..++++ +|+++
T Consensus 169 ~l~~~L~~l~~~~g~tiiivtH~~~--~~~~~~d~i~~l~-~G~i~ 211 (354)
T TIGR02142 169 EILPYLERLHAEFGIPILYVSHSLQ--EVLRLADRVVVLE-DGRVA 211 (354)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH--HHHHhCCEEEEEe-CCEEE
Confidence 4455666666665665555532220 1112335555664 56654
No 237
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=51.14 E-value=23 Score=24.66 Aligned_cols=69 Identities=14% Similarity=0.127 Sum_probs=42.7
Q ss_pred HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342 32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN 111 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~ 111 (121)
.+|..+++++|+-=|=.. .+.+.......+.|.+++++.|+.+++...... -.-++....+-+. +|+
T Consensus 159 ARaL~Q~pkiILADEPva----------sLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd--lA~~Y~~Riigl~-~G~ 225 (258)
T COG3638 159 ARALVQQPKIILADEPVA----------SLDPESAKKVMDILKDINQEDGITVIVNLHQVD--LAKKYADRIIGLK-AGR 225 (258)
T ss_pred HHHHhcCCCEEecCCccc----------ccChhhHHHHHHHHHHHHHHcCCEEEEEechHH--HHHHHHhhheEec-CCc
Confidence 334556788888877543 222223457788899999999999988853321 1224455555554 566
Q ss_pred EE
Q 033342 112 IR 113 (121)
Q Consensus 112 i~ 113 (121)
++
T Consensus 226 iv 227 (258)
T COG3638 226 IV 227 (258)
T ss_pred EE
Confidence 63
No 238
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=51.04 E-value=63 Score=22.26 Aligned_cols=42 Identities=12% Similarity=0.115 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
...+.+.+++++.+..+++-+.... .- ...+..+++. +|++.
T Consensus 180 ~l~~~l~~~~~~~~~tiii~sH~~~--~~-~~~d~v~~l~-~G~i~ 221 (271)
T PRK13632 180 EIKKIMVDLRKTRKKTLISITHDMD--EA-ILADKVIVFS-EGKLI 221 (271)
T ss_pred HHHHHHHHHHHhcCcEEEEEEechh--HH-hhCCEEEEEE-CCEEE
Confidence 4455556665554445544432221 11 2345566665 67764
No 239
>PLN02833 glycerol acyltransferase family protein
Probab=50.99 E-value=40 Score=24.86 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHH--CCCcEEEccCCcc
Q 033342 25 ATCSRLVKEAAS--AGAKLLCFPENFS 49 (121)
Q Consensus 25 ~~~~~~~~~a~~--~~~dlvv~PE~~~ 49 (121)
..+.+.+++..+ .|..+++|||..-
T Consensus 222 ~~~~~~l~~~l~~~~G~~llIFPEGTr 248 (376)
T PLN02833 222 EVVAKKLRDHVQDPDRNPLLIFPEGTC 248 (376)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCccc
Confidence 334444444333 5788999999975
No 240
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=50.91 E-value=35 Score=22.56 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i 112 (121)
...+.+.++.++.+..+++-+.... . -.+.+..+++. +|++
T Consensus 179 ~l~~~l~~~~~~~~~tii~~sh~~~--~-~~~~d~v~~l~-~g~~ 219 (220)
T TIGR02982 179 DVVELMQKLAREQGCTILIVTHDNR--I-LDVADRIVHME-DGKL 219 (220)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--H-HhhCCEEEEEE-CCEE
Confidence 3456666666655666655543321 1 13556667775 5654
No 241
>PF10042 DUF2278: Uncharacterized conserved protein (DUF2278); InterPro: IPR019268 This entry consists of hypothetical proteins with no known function.
Probab=50.75 E-value=29 Score=23.36 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=29.2
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDA 56 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~ 56 (121)
+.-..-.+.++.++.+|.+++++|.+|-|.|. +|....
T Consensus 115 G~~ndl~d~Le~~l~~A~~~~~~iyvFG~~F~-~g~GIH 152 (206)
T PF10042_consen 115 GPDNDLNDDLEPYLQRAISDDATIYVFGEPFR-PGNGIH 152 (206)
T ss_pred CCcchHHHHHHHHHHHHHhCCCEEEEECceec-CCCCcc
Confidence 33445567888889999999999999999997 564433
No 242
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=50.72 E-value=38 Score=23.54 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..|++-+.... .-. ..+..+++. +|+++
T Consensus 178 ~l~~~l~~l~~~~~~tilivsH~~~--~~~-~~d~i~~l~-~G~i~ 219 (279)
T PRK13635 178 EVLETVRQLKEQKGITVLSITHDLD--EAA-QADRVIVMN-KGEIL 219 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEEecCHH--HHH-cCCEEEEEE-CCEEE
Confidence 4455566666665666655533221 111 245666665 57654
No 243
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=50.36 E-value=40 Score=22.45 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
.+.+.+.+++++.+..+++-+.... .- ...+..+++++++
T Consensus 175 ~l~~~l~~~~~~~~~tvii~sh~~~--~~-~~~d~i~~l~~~~ 214 (225)
T PRK10247 175 NVNEIIHRYVREQNIAVLWVTHDKD--EI-NHADKVITLQPHA 214 (225)
T ss_pred HHHHHHHHHHHhcCCEEEEEECChH--HH-HhCCEEEEEeccc
Confidence 3445555666655665555533321 11 2356777775444
No 244
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=50.27 E-value=31 Score=25.19 Aligned_cols=44 Identities=16% Similarity=0.198 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
...+.+.++.++.+..+++-+.... .-..+.+..++++ +|++..
T Consensus 171 ~l~~~L~~l~~~~g~tvI~vTHd~~--~~~~~~d~i~vl~-~G~i~~ 214 (369)
T PRK11000 171 QMRIEISRLHKRLGRTMIYVTHDQV--EAMTLADKIVVLD-AGRVAQ 214 (369)
T ss_pred HHHHHHHHHHHHhCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEEE
Confidence 4455566666666666655432220 1123445666665 676643
No 245
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=50.10 E-value=49 Score=19.11 Aligned_cols=47 Identities=9% Similarity=-0.086 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeec
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRK 118 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K 118 (121)
-++.+.+.+.+.++.+... .... ..+...++.++.+|+|..+..+.+
T Consensus 71 dl~~~~~~l~~~G~~~~~~-~~~~--~~~~~~~~~~~~DP~G~~ie~~~~ 117 (120)
T cd07254 71 EVAEAKARAEAAGLPTFKE-EDTT--CCYAVQDKVWVTDPDGNAWEVFVT 117 (120)
T ss_pred HHHHHHHHHHHcCCeEEcc-CCcc--cccCCcceEEEECCCCCEEEEEEe
Confidence 3566666667778877543 1110 111224678899999988776654
No 246
>PRK05957 aspartate aminotransferase; Provisional
Probab=49.98 E-value=60 Score=23.53 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHHHcCcEEEe
Q 033342 67 GPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+.++.+.++|+++++.++.
T Consensus 179 ~~~~~~i~~~a~~~~~~li~ 198 (389)
T PRK05957 179 EALLRAVNQICAEHGIYHIS 198 (389)
T ss_pred HHHHHHHHHHHHHcCcEEEE
Confidence 34577888999999988863
No 247
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=49.92 E-value=41 Score=22.97 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECC-CCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDD-AGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~-~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++.+ +|+++
T Consensus 166 ~l~~~L~~~~~~~g~tviivsH~~~--~~~~~~d~i~~l~~~~G~i~ 210 (255)
T PRK11248 166 QMQTLLLKLWQETGKQVLLITHDIE--EAVFMATELVLLSPGPGRVV 210 (255)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEeCCCcEEE
Confidence 3444555555544655655433221 11234455666653 46654
No 248
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=49.91 E-value=38 Score=23.30 Aligned_cols=43 Identities=5% Similarity=0.013 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~~--~~~~~~d~v~~l~-~G~i~ 223 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDVP--EVLSIADHAYIVA-DKKIV 223 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCHH--HHHHhhCEEEEEE-CCEEE
Confidence 3445566666554655555432210 1113445566665 57664
No 249
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=49.86 E-value=64 Score=22.55 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHCCCcE-EEccCCc
Q 033342 22 ANFATCSRLVKEAASAGAKL-LCFPENF 48 (121)
Q Consensus 22 ~n~~~~~~~~~~a~~~~~dl-vv~PE~~ 48 (121)
.+.+...++.+.|.+.|+|- ++.|-..
T Consensus 80 ~~~~~~i~~a~~a~~~G~d~v~~~pP~~ 107 (292)
T PRK03170 80 NSTAEAIELTKFAEKAGADGALVVTPYY 107 (292)
T ss_pred chHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 36677888888888889984 4445443
No 250
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=49.85 E-value=77 Score=21.93 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=16.9
Q ss_pred CChHHHHHHHHHHHcCcEEEecc
Q 033342 66 DGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
+.+..+.+.+.|++++..+.+++
T Consensus 98 d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 98 DKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeC
Confidence 44567788899999887766554
No 251
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=49.76 E-value=37 Score=23.31 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++.
T Consensus 171 ~l~~~L~~~~~~~~~tviivsHd~~--~~~~~~d~i~~l~-~G~i~~ 214 (257)
T PRK11247 171 EMQDLIESLWQQHGFTVLLVTHDVS--EAVAMADRVLLIE-EGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEEe
Confidence 3445556665655666655433220 1113445566665 566643
No 252
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=49.70 E-value=66 Score=22.41 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHCCCcEE-EccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 23 NFATCSRLVKEAASAGAKLL-CFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlv-v~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
+.+...++.+.|.+.|+|-+ +.|=++. .+. ..+..+.+.+++...+++|+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~--~~s-----------~~~l~~y~~~ia~~~~~pi~ 131 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYF--KPS-----------QEELIDYFRAIADATDLPII 131 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSS--SCC-----------HHHHHHHHHHHHHHSSSEEE
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccc--cch-----------hhHHHHHHHHHHhhcCCCEE
Confidence 45667777777888899944 4544332 111 22345556666655555554
No 253
>PLN00175 aminotransferase family protein; Provisional
Probab=49.68 E-value=66 Score=23.69 Aligned_cols=41 Identities=10% Similarity=0.125 Sum_probs=25.1
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
..++++|+++--..++|.. .+.+.++.+.++|++++++++.
T Consensus 185 ~~~~k~i~i~~p~NPtG~~----------~s~~~l~~l~~~a~~~~~~ii~ 225 (413)
T PLN00175 185 TSKTRAILINTPHNPTGKM----------FTREELELIASLCKENDVLAFT 225 (413)
T ss_pred CcCceEEEecCCCCCCCcC----------CCHHHHHHHHHHHHHcCcEEEE
Confidence 3456777665333333322 2345678889999999987753
No 254
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=49.53 E-value=70 Score=22.36 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHCCCcEEE-ccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc-CcEEE
Q 033342 23 NFATCSRLVKEAASAGAKLLC-FPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES-SMWLS 85 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv-~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~~~ii 85 (121)
+.+...++.+.|.+.|+|-++ .|-... . + .+.+..+.+..++... ++.|+
T Consensus 81 ~~~~ai~~a~~a~~~Gad~v~~~~P~y~-~-~-----------~~~~i~~~~~~v~~a~~~lpi~ 132 (288)
T cd00954 81 NLKESQELAKHAEELGYDAISAITPFYY-K-F-----------SFEEIKDYYREIIAAAASLPMI 132 (288)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCC-C-C-----------CHHHHHHHHHHHHHhcCCCCEE
Confidence 566777888888889999754 455443 1 1 1234555566666555 44443
No 255
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=49.39 E-value=33 Score=25.17 Aligned_cols=44 Identities=11% Similarity=0.240 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
...+.+.++.++.++.+++-+.... +--.+-+..+++. +|++..
T Consensus 182 ~l~~~L~~l~~~~g~tiI~vTHd~~--ea~~laDri~vl~-~G~i~~ 225 (375)
T PRK09452 182 QMQNELKALQRKLGITFVFVTHDQE--EALTMSDRIVVMR-DGRIEQ 225 (375)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEEE
Confidence 4566667777776776655432221 1113445566665 576643
No 256
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=49.31 E-value=34 Score=24.25 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHC--CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 23 NFATCSRLVKEAASA--GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 23 n~~~~~~~~~~a~~~--~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+.+.+.+.+++...+ +..+|+++--..++|.. .+.+.+..+.+++++++++++.
T Consensus 131 d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~----------~~~~~l~~l~~~~~~~~~~ii~ 186 (363)
T PF00155_consen 131 DPEALEEALDELPSKGPRPKAVLICNPNNPTGSV----------LSLEELRELAELAREYNIIIIV 186 (363)
T ss_dssp THHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB------------HHHHHHHHHHHHHTTSEEEE
T ss_pred cccccccccccccccccccceeeecccccccccc----------cccccccchhhhhcccccceee
Confidence 445566666654444 35788877555545542 2345567788889999988864
No 257
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=49.21 E-value=35 Score=24.40 Aligned_cols=45 Identities=18% Similarity=0.152 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 67 GPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
..+++.+.++.++.+..+++-+.... .-..+....+++. +|+++.
T Consensus 190 ~~il~lL~~l~~~~g~til~iTHdl~--~~~~~adri~vm~-~G~ive 234 (326)
T PRK11022 190 AQIIELLLELQQKENMALVLITHDLA--LVAEAAHKIIVMY-AGQVVE 234 (326)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEEE
Confidence 35667777777777766665532210 1112345556664 577653
No 258
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=49.11 E-value=37 Score=23.72 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 182 ~l~~~l~~l~~~~g~tvi~vtHd~~--~~~~~~drv~~l~-~G~i~ 224 (287)
T PRK13637 182 EILNKIKELHKEYNMTIILVSHSME--DVAKLADRIIVMN-KGKCE 224 (287)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 4445556666665666655543220 1113456666775 67764
No 259
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=48.99 E-value=35 Score=24.46 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.|.++.++.+..+++-+.... .-.++-+..+++. +|+++
T Consensus 192 ~i~~lL~~l~~~~g~til~iTHdl~--~~~~~adrv~vm~-~G~iv 234 (327)
T PRK11308 192 QVLNLMMDLQQELGLSYVFISHDLS--VVEHIADEVMVMY-LGRCV 234 (327)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 5566677777776766655532210 1112334555554 56664
No 260
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=48.97 E-value=67 Score=20.30 Aligned_cols=63 Identities=17% Similarity=0.144 Sum_probs=35.5
Q ss_pred HHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342 32 KEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN 111 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~ 111 (121)
.+|...+++++++=|-.. + .+....+.+.++.++.+..+++-+... .--...+..++++.+|.
T Consensus 103 aral~~~p~~lllDEPt~--~------------LD~~~~~~l~~~l~~~~~tiiivsh~~---~~~~~~d~i~~l~~~~~ 165 (166)
T cd03223 103 ARLLLHKPKFVFLDEATS--A------------LDEESEDRLYQLLKELGITVISVGHRP---SLWKFHDRVLDLDGEGG 165 (166)
T ss_pred HHHHHcCCCEEEEECCcc--c------------cCHHHHHHHHHHHHHhCCEEEEEeCCh---hHHhhCCEEEEEcCCCC
Confidence 345567899999999664 1 233444555555555555555443332 11235566677776664
No 261
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=48.89 E-value=66 Score=23.04 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=26.0
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
..++++|+++.....+|... + ++.+.++++++++.+++
T Consensus 137 ~~~~~lv~~~~~~~~tG~~~------------p-i~~I~~~~~~~~~~~~v 174 (371)
T PF00266_consen 137 NPDTRLVSISHVENSTGVRN------------P-IEEIAKLAHEYGALLVV 174 (371)
T ss_dssp HTTESEEEEESBETTTTBBS------------S-HHHHHHHHHHTTSEEEE
T ss_pred ccccceEEeecccccccEEe------------e-eceehhhhhccCCceeE
Confidence 46778888887765344311 1 56788899999888765
No 262
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.77 E-value=47 Score=22.36 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
...+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 169 ~l~~~l~~~~~~~g~tii~~sH~~~--~~~~~~d~i~~l~-~G~i~ 211 (241)
T PRK14250 169 IIEELIVKLKNKMNLTVIWITHNME--QAKRIGDYTAFLN-KGILV 211 (241)
T ss_pred HHHHHHHHHHHhCCCEEEEEeccHH--HHHHhCCEEEEEe-CCEEE
Confidence 3444555555555666655433221 1113456666775 67664
No 263
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=48.75 E-value=38 Score=22.63 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+-+..++++ +|++.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~--~~~~~~d~i~~l~-~g~i~ 209 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE--DAARIAPRSLVVA-DGRIA 209 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3455666666665655655533221 1113345566665 67664
No 264
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=48.64 E-value=43 Score=22.91 Aligned_cols=43 Identities=14% Similarity=0.154 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCC-----CCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDA-----GNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~-----G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-.++.+..++++ + |+++
T Consensus 188 ~l~~~l~~l~~~~~~tiiivsH~~~--~i~~~~d~i~~l~-~~~~~~G~i~ 235 (261)
T PRK14258 188 KVESLIQSLRLRSELTMVIVSHNLH--QVSRLSDFTAFFK-GNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHH--HHHHhcCEEEEEc-cCCCcCceEE
Confidence 3445566665544555555432221 2224567777786 4 7764
No 265
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=48.56 E-value=83 Score=21.74 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.+++++.+.+.++.|++.|..+.+-+|...
T Consensus 107 ~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 138 (268)
T cd07940 107 KTREEVLERAVEAVEYAKSHGLDVEFSAEDAT 138 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeeecCC
Confidence 45677899999999999999988887777654
No 266
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.50 E-value=38 Score=22.64 Aligned_cols=42 Identities=10% Similarity=0.214 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i 112 (121)
.+.+.+.+++++.+..+++-+.... .-...-+..+++. +|++
T Consensus 168 ~l~~~l~~~~~~~~~tiii~sh~~~--~~~~~~d~i~~l~-~G~~ 209 (232)
T cd03300 168 DMQLELKRLQKELGITFVFVTHDQE--EALTMSDRIAVMN-KGKI 209 (232)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhcCEEEEEE-CCEE
Confidence 4455566666655666655532221 1112335556665 5665
No 267
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=48.36 E-value=44 Score=26.40 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=26.5
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
++.++|--+++|||... +... . -.++..-...+|.+.+++|+.
T Consensus 92 ~~l~~g~~~~iFPEGtr-~~~~-----~-----~~~~k~G~~~~a~~~~~pivP 134 (718)
T PRK08043 92 RLVEQGRPVVIFPEGRI-TVTG-----S-----LMKIYDGAGFVAAKSGATVIP 134 (718)
T ss_pred HHHhCCCEEEEeCCCcc-CCCC-----C-----ccCcchHHHHHHHHCCCCEEE
Confidence 34567889999999985 2111 1 112334556667788877743
No 268
>PRK05764 aspartate aminotransferase; Provisional
Probab=48.21 E-value=64 Score=23.28 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHcCcEEEec
Q 033342 68 PIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G 87 (121)
+.++.+.++|++++++++.=
T Consensus 184 ~~~~~l~~~a~~~~~~ii~D 203 (393)
T PRK05764 184 EELEAIADVAVEHDIWVLSD 203 (393)
T ss_pred HHHHHHHHHHHHCCcEEEEe
Confidence 45778888999999888653
No 269
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=48.04 E-value=43 Score=22.49 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-.++.+..++++ +|++.
T Consensus 168 ~~~~~l~~~~~~~~~tvli~sH~~~--~~~~~~d~i~~l~-~g~i~ 210 (237)
T TIGR00968 168 ELRSWLRKLHDEVHVTTVFVTHDQE--EAMEVADRIVVMS-NGKIE 210 (237)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHhhcCEEEEEE-CCEEE
Confidence 4455566665554666655543221 1123445556665 67654
No 270
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.00 E-value=88 Score=21.66 Aligned_cols=14 Identities=7% Similarity=0.034 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCcE
Q 033342 70 MQGYCSLARESSMW 83 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ 83 (121)
...+.+.++++++.
T Consensus 129 ~~~~~~~~~~~gl~ 142 (256)
T TIGR00262 129 SGDLVEAAKKHGVK 142 (256)
T ss_pred HHHHHHHHHHCCCc
Confidence 44555566666644
No 271
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=47.80 E-value=1.1e+02 Score=22.92 Aligned_cols=32 Identities=13% Similarity=0.080 Sum_probs=29.3
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.+++++++.+.++.|.+.+..+...||.+.
T Consensus 110 ~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~ 141 (409)
T COG0119 110 KTREEVLERAVDAVEYARDHGLEVRFSAEDAT 141 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 67899999999999999999988888899886
No 272
>PRK06108 aspartate aminotransferase; Provisional
Probab=47.59 E-value=64 Score=23.12 Aligned_cols=20 Identities=10% Similarity=0.330 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHcCcEEEe
Q 033342 67 GPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+.++.+.++|++++++++.
T Consensus 177 ~~~~~~l~~~~~~~~~~li~ 196 (382)
T PRK06108 177 RDDLRAILAHCRRHGLWIVA 196 (382)
T ss_pred HHHHHHHHHHHHHCCcEEEE
Confidence 34577888889999988764
No 273
>PRK12414 putative aminotransferase; Provisional
Probab=47.56 E-value=65 Score=23.34 Aligned_cols=40 Identities=5% Similarity=0.113 Sum_probs=24.8
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.++++|+++--..++|.. .+.+-++.+.++|++++++++.
T Consensus 161 ~~~~~v~i~~p~NPTG~~----------~s~~~~~~i~~~a~~~~~~ii~ 200 (384)
T PRK12414 161 PRTRMIIVNTPHNPSATV----------FSAADLARLAQLTRNTDIVILS 200 (384)
T ss_pred cccEEEEEcCCCCCCCcC----------CCHHHHHHHHHHHHHCCeEEEE
Confidence 456777775333333432 2234567788889999988764
No 274
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.51 E-value=44 Score=23.01 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+....+++. +|++.
T Consensus 198 ~l~~~l~~~~~~~g~tiii~tH~~~--~~~~~~d~v~~l~-~G~i~ 240 (269)
T cd03294 198 EMQDELLRLQAELQKTIVFITHDLD--EALRLGDRIAIMK-DGRLV 240 (269)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhcCEEEEEE-CCEEE
Confidence 4445556666554555555432220 1113445566665 67664
No 275
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=47.45 E-value=64 Score=19.63 Aligned_cols=78 Identities=9% Similarity=0.030 Sum_probs=38.3
Q ss_pred ccEEEEEEecc---c-c-----CHHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHH
Q 033342 6 SVRVAVAQMTS---I-N-----DLAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSL 76 (121)
Q Consensus 6 ~~~ia~vQ~~~---~-~-----~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 76 (121)
...+.+++... . + +.....+.+.++++.+...+ .++++.-... ..................+.+.++++
T Consensus 61 ~~d~vvi~~G~ND~~~~~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (179)
T PF13472_consen 61 KPDLVVISFGTNDVLNGDENDTSPEQYEQNLRRIIEQLRPHG-PVILVSPPPR-GPDPRDPKQDYLNRRIDRYNQAIREL 138 (179)
T ss_dssp TCSEEEEE--HHHHCTCTTCHHHHHHHHHHHHHHHHHHHTTS-EEEEEE-SCS-SSSTTTTHTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcccccccccccccccHHHHHHHHHHHHHhhcccC-cEEEecCCCc-ccccccccchhhhhhHHHHHHHHHHH
Confidence 34566666542 1 1 24445566666666665555 7766655433 11111000000111224566778889
Q ss_pred HHHcCcEEE
Q 033342 77 ARESSMWLS 85 (121)
Q Consensus 77 a~~~~~~ii 85 (121)
|+++++.++
T Consensus 139 a~~~~~~~i 147 (179)
T PF13472_consen 139 AKKYGVPFI 147 (179)
T ss_dssp HHHCTEEEE
T ss_pred HHHcCCEEE
Confidence 999988774
No 276
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.32 E-value=79 Score=22.21 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.++.++.+.+.++.|.+.|..+.+-.|.+.
T Consensus 108 ~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~ 139 (280)
T cd07945 108 KTPEEHFADIREVIEYAIKNGIEVNIYLEDWS 139 (280)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCC
Confidence 46788899999999999999999999999854
No 277
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=47.24 E-value=46 Score=22.72 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+-+..+++. +|++.
T Consensus 190 ~l~~~l~~~~~~~g~tvii~tH~~~--~~~~~~d~i~~l~-~g~i~ 232 (262)
T PRK09984 190 IVMDTLRDINQNDGITVVVTLHQVD--YALRYCERIVALR-QGHVF 232 (262)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 4455566666555555554432220 1123445666675 57653
No 278
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=47.14 E-value=40 Score=24.20 Aligned_cols=43 Identities=12% Similarity=0.093 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++.++++..+++-+.... .-..+-+..+++. +|+++
T Consensus 199 ~i~~lL~~l~~~~~~til~iTHdl~--~~~~~~dri~vl~-~G~iv 241 (331)
T PRK15079 199 QVVNLLQQLQREMGLSLIFIAHDLA--VVKHISDRVLVMY-LGHAV 241 (331)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 4556667776666776665542221 1112335555664 57664
No 279
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.88 E-value=40 Score=23.48 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
...+.+.++.++.+..+++-+.... .-..+.+..++++ +|+++
T Consensus 183 ~l~~~l~~l~~~~g~tvl~vtH~~~--~~~~~~dri~~l~-~G~i~ 225 (286)
T PRK13646 183 QVMRLLKSLQTDENKTIILVSHDMN--EVARYADEVIVMK-EGSIV 225 (286)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3344555555555666655532220 1113446667775 67765
No 280
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.83 E-value=36 Score=23.55 Aligned_cols=64 Identities=9% Similarity=0.093 Sum_probs=30.8
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +-+ ......+.+.+.+++++ +..|++-+.... .-.++-+..++++ +|+++
T Consensus 154 ~~~p~llllDEPt~--~LD--------~~~~~~l~~~l~~~~~~-g~tili~tH~~~--~~~~~~d~i~~l~-~G~i~ 217 (274)
T PRK13647 154 AMDPDVIVLDEPMA--YLD--------PRGQETLMEILDRLHNQ-GKTVIVATHDVD--LAAEWADQVIVLK-EGRVL 217 (274)
T ss_pred HcCCCEEEEECCCc--CCC--------HHHHHHHHHHHHHHHHC-CCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34667777766553 111 00112344555565544 666655532220 1113456666675 67664
No 281
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.76 E-value=40 Score=22.57 Aligned_cols=19 Identities=16% Similarity=0.270 Sum_probs=14.6
Q ss_pred HHHHHHCCCcEEEccCCcc
Q 033342 31 VKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~ 49 (121)
.+...+.++|||++.|+-.
T Consensus 20 ~~~l~~~~~DIv~LQE~~~ 38 (255)
T TIGR00633 20 LDWLKEEQPDVLCLQETKV 38 (255)
T ss_pred HHHHHhcCCCEEEEEeccC
Confidence 3444567899999999875
No 282
>PRK10908 cell division protein FtsE; Provisional
Probab=46.64 E-value=35 Score=22.59 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
+.+.+.++.++ +..+++-+.... .-..+.+..+++. +|++++
T Consensus 176 l~~~l~~~~~~-~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~~ 217 (222)
T PRK10908 176 ILRLFEEFNRV-GVTVLMATHDIG--LISRRSYRMLTLS-DGHLHG 217 (222)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEcc
Confidence 44445555443 455544432220 1112345666775 677654
No 283
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=46.32 E-value=41 Score=22.49 Aligned_cols=42 Identities=17% Similarity=0.243 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++ +..+++-+.... .-..+.+..+++. +|+++
T Consensus 175 ~l~~~l~~~~~~-~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~ 216 (237)
T PRK11614 175 QIFDTIEQLREQ-GMTIFLVEQNAN--QALKLADRGYVLE-NGHVV 216 (237)
T ss_pred HHHHHHHHHHHC-CCEEEEEeCcHH--HHHhhCCEEEEEe-CCEEE
Confidence 344455555543 555554432210 1124556777776 67764
No 284
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.24 E-value=45 Score=23.23 Aligned_cols=42 Identities=10% Similarity=0.212 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.+++++.+..+++-+.... .-.++.+..+++. +|+++
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~~--~~~~~~d~i~~l~-~G~i~ 230 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNMD--QVLRIADEVIVMH-EGKVI 230 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCHH--HHHHhCCEEEEEE-CCEEE
Confidence 344455566555666655532220 1123456666675 67664
No 285
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=46.03 E-value=1e+02 Score=21.51 Aligned_cols=55 Identities=16% Similarity=0.139 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 24 FATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 24 ~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
.+.+.+.++.+.++++|+|..+=.+. .... ..+..+.+.+.++++++++.+++..
T Consensus 76 ~~~i~~ai~~a~~~g~~Vin~S~g~~-~~~~---------~~~~~~~~ai~~a~~~~GvlvVaAA 130 (275)
T cd05562 76 ELDFAAAIRALAAAGADIIVDDIGYL-NEPF---------FQDGPIAQAVDEVVASPGVLYFSSA 130 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccccc-CCCc---------ccCCHHHHHHHHHHHcCCcEEEEeC
Confidence 45677788888889999998764332 1110 1223455666666665688776553
No 286
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=45.99 E-value=41 Score=25.69 Aligned_cols=44 Identities=16% Similarity=0.202 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
.+.+.+.+++++.+..|++-+.... .-..+....+++. +|+++.
T Consensus 463 ~l~~~l~~~~~~~~~tvi~vsHd~~--~~~~~~d~i~~l~-~G~i~~ 506 (529)
T PRK15134 463 QILALLKSLQQKHQLAYLFISHDLH--VVRALCHQVIVLR-QGEVVE 506 (529)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH--HHHHhcCeEEEEE-CCEEEE
Confidence 4556677777666766665543221 1113445666675 677653
No 287
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=45.81 E-value=54 Score=24.95 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+....+++. +|+++
T Consensus 206 ~l~~~l~~l~~~~g~tviivtHd~~--~~~~~~d~i~~l~-~G~i~ 248 (520)
T TIGR03269 206 LVHNALEEAVKASGISMVLTSHWPE--VIEDLSDKAIWLE-NGEIK 248 (520)
T ss_pred HHHHHHHHHHHhcCcEEEEEeCCHH--HHHHhcCEEEEEe-CCEEe
Confidence 3444567777766766655533221 1123445666675 67764
No 288
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=45.68 E-value=87 Score=22.43 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 26 TCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 26 ~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+.+.++++...+..+|+.+.....+|.. .-++.+.++|+++++.++.
T Consensus 151 ~l~~~l~~~~~~~~~~v~~~~v~~~tG~~-------------~~~~~i~~l~~~~~~~li~ 198 (385)
T TIGR01825 151 DLDRVLRENPSYGKKLIVTDGVFSMDGDV-------------APLPEIVELAERYGAVTYV 198 (385)
T ss_pred HHHHHHHhhccCCCeEEEEecCCcCCCCc-------------cCHHHHHHHHHHhCCEEEE
Confidence 34444443333456777766544323321 0156789999999988763
No 289
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=45.65 E-value=87 Score=22.33 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=22.8
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
.++++|+++-...++|... + ++.+.++|+++++++++=
T Consensus 138 ~~~~~v~~~~~~~~tG~~~------------~-~~~i~~~~~~~~~~li~D 175 (373)
T cd06453 138 ERTKLVAVTHVSNVLGTIN------------P-VKEIGEIAHEAGVPVLVD 175 (373)
T ss_pred CCceEEEEeCcccccCCcC------------C-HHHHHHHHHHcCCEEEEE
Confidence 3667777655443233221 1 467888888888877553
No 290
>PRK14072 6-phosphofructokinase; Provisional
Probab=45.64 E-value=50 Score=24.70 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=11.0
Q ss_pred CCCcEEEccCCcc
Q 033342 37 AGAKLLCFPENFS 49 (121)
Q Consensus 37 ~~~dlvv~PE~~~ 49 (121)
.+||+++.||.-.
T Consensus 208 ~gad~iliPE~~~ 220 (416)
T PRK14072 208 DAPHLIYLPERPF 220 (416)
T ss_pred CCccEEEccCCCC
Confidence 6899999999754
No 291
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=45.56 E-value=30 Score=19.70 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHcCcEEEecc
Q 033342 68 PIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~ 88 (121)
++.+-+.+.++++++.++.|.
T Consensus 75 ~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 75 EIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp HHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHhCCcEeCcC
Confidence 567788899999999998873
No 292
>COG0093 RplN Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]
Probab=45.39 E-value=17 Score=22.23 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=13.2
Q ss_pred EEEEEECCCCCEEee
Q 033342 101 NTHVLLDDAGNIRST 115 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~ 115 (121)
|++++++++|+..++
T Consensus 82 NA~Viin~~g~P~Gt 96 (122)
T COG0093 82 NAAVIINPDGEPRGT 96 (122)
T ss_pred ceEEEECCCCCcccc
Confidence 999999999988665
No 293
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=45.16 E-value=49 Score=21.95 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=10.5
Q ss_pred ceEEEEEEECCCCCEEe
Q 033342 98 RLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 98 ~~~Ns~~~i~~~G~i~~ 114 (121)
.+.+..+++. +|+++.
T Consensus 205 ~~~d~i~~l~-~G~i~~ 220 (227)
T cd03260 205 RVADRTAFLL-NGRLVE 220 (227)
T ss_pred HhCCEEEEEe-CCEEEE
Confidence 3556777776 687753
No 294
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=45.11 E-value=1.2e+02 Score=22.19 Aligned_cols=51 Identities=8% Similarity=0.017 Sum_probs=31.4
Q ss_pred CCCcEEEc-cCCcc-CCCCCCch--hhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 37 AGAKLLCF-PENFS-YVGDKDAD--NIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 37 ~~~dlvv~-PE~~~-~~~~~~~~--~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
.+||+||. |--.. -..|++.. .........+.....+.+.|++++++++-.
T Consensus 254 ~~AdVVItNPTH~AVAL~Yd~~~~~aP~VvAKG~d~~A~~Ir~iA~e~~VPiven 308 (349)
T PRK12721 254 KKSTAVVRNPTHIAVCLYYHPGETPLPRVLEKGKDAQALHIVKLAERNGIPVVEN 308 (349)
T ss_pred CCCcEEEEcCCceEEEEEeCCCCCCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeC
Confidence 36899888 65432 12333221 111111246778889999999999999644
No 295
>PLN02397 aspartate transaminase
Probab=44.86 E-value=1.2e+02 Score=22.43 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=22.7
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.+..+++.|--..++|... +.+.++.+.++|++++++|+
T Consensus 193 ~~~~~i~~~~P~NPTG~v~----------s~e~l~~i~~~a~~~~~~vI 231 (423)
T PLN02397 193 DGSFVLLHACAHNPTGVDP----------TPEQWEQISDLIKSKNHLPF 231 (423)
T ss_pred CCCEEEEeCCCCCCCCCCC----------CHHHHHHHHHHHHhCCcEEE
Confidence 4567777776666566542 33445556666666666554
No 296
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=44.78 E-value=45 Score=24.36 Aligned_cols=65 Identities=12% Similarity=0.186 Sum_probs=33.1
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc-CcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES-SMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +- .........+.+.++.++. ++.+++-+.... +--.+-+..++++ +|+++
T Consensus 153 ~~~P~llLLDEP~s--~L--------D~~~r~~l~~~l~~l~~~~~g~til~vTHd~~--ea~~l~dri~vl~-~G~i~ 218 (362)
T TIGR03258 153 AIEPDVLLLDEPLS--AL--------DANIRANMREEIAALHEELPELTILCVTHDQD--DALTLADKAGIMK-DGRLA 218 (362)
T ss_pred hcCCCEEEEcCccc--cC--------CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34677777777554 11 1111234556666777775 666655432221 1123445566665 67664
No 297
>CHL00057 rpl14 ribosomal protein L14
Probab=44.55 E-value=25 Score=21.64 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=14.0
Q ss_pred EEEEEECCCCCEEeee
Q 033342 101 NTHVLLDDAGNIRSTY 116 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~y 116 (121)
|++++++++|+.+++.
T Consensus 82 Na~VLin~~~~p~GTr 97 (122)
T CHL00057 82 NAAVVIDQEGNPKGTR 97 (122)
T ss_pred ceEEEECCCCCEeEeE
Confidence 9999999999988763
No 298
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=44.05 E-value=48 Score=21.77 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=30.1
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +-+ ......+.+.+.+++++ +..+++-+.... .-..+-+..++++ +|++.
T Consensus 152 ~~~p~illlDEPt~--~LD--------~~~~~~l~~~l~~~~~~-~~tii~~tH~~~--~~~~~~d~i~~l~-~G~i~ 215 (218)
T cd03266 152 VHDPPVLLLDEPTT--GLD--------VMATRALREFIRQLRAL-GKCILFSTHIMQ--EVERLCDRVVVLH-RGRVV 215 (218)
T ss_pred hcCCCEEEEcCCCc--CCC--------HHHHHHHHHHHHHHHHC-CCEEEEEeCCHH--HHHHhcCEEEEEE-CCEEe
Confidence 34677777777553 111 10112344555555443 555544432220 1113345666775 68764
No 299
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=44.01 E-value=40 Score=25.06 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=32.8
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +-+ ......+.+.+.++++ .+..+++-+.... .-.++-+..++++ +|+++
T Consensus 155 ~~~P~iLLLDEPts--gLD--------~~~~~~l~~lL~~l~~-~g~TIIivsHdl~--~~~~~adrii~l~-~G~iv 218 (402)
T PRK09536 155 AQATPVLLLDEPTA--SLD--------INHQVRTLELVRRLVD-DGKTAVAAIHDLD--LAARYCDELVLLA-DGRVR 218 (402)
T ss_pred HcCCCEEEEECCcc--cCC--------HHHHHHHHHHHHHHHh-cCCEEEEEECCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34667777766553 111 0011245666777765 4666655532221 2224556677775 67654
No 300
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=43.66 E-value=60 Score=23.36 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=11.4
Q ss_pred HCCCcEEEccCCcc
Q 033342 36 SAGAKLLCFPENFS 49 (121)
Q Consensus 36 ~~~~dlvv~PE~~~ 49 (121)
+.+||+++.||.-.
T Consensus 182 a~ga~~iliPE~~~ 195 (317)
T cd00763 182 AGGAEFIVIPEAEF 195 (317)
T ss_pred HcCCCEEEeCCCCC
Confidence 45899999999754
No 301
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=43.60 E-value=34 Score=22.35 Aligned_cols=40 Identities=20% Similarity=0.185 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i 112 (121)
+.+.+.+++++ +..+++-+.... .-..+.+..+++. +|++
T Consensus 165 l~~~l~~~~~~-~~tii~~sH~~~--~~~~~~d~i~~l~-~G~i 204 (205)
T cd03226 165 VGELIRELAAQ-GKAVIVITHDYE--FLAKVCDRVLLLA-NGAI 204 (205)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHH--HHHHhCCEEEEEE-CCEE
Confidence 34444444433 555544432221 1113456666665 5654
No 302
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=43.54 E-value=59 Score=25.31 Aligned_cols=45 Identities=22% Similarity=0.134 Sum_probs=29.8
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
|...+++|+++=|=.. .+..+...+.++.+.++.++.++.+++-+
T Consensus 168 ALa~~P~LLIaDEPTT----------aLDvt~q~qIL~llk~l~~e~g~a~l~IT 212 (539)
T COG1123 168 ALALKPKLLIADEPTT----------ALDVTTQAQILDLLKDLQRELGMAVLFIT 212 (539)
T ss_pred HHhCCCCEEEECCCcc----------ccCHHHHHHHHHHHHHHHHHcCcEEEEEc
Confidence 4455666766666443 12222345788899999999999987664
No 303
>PLN02721 threonine aldolase
Probab=43.54 E-value=1.1e+02 Score=21.43 Aligned_cols=20 Identities=15% Similarity=0.126 Sum_probs=15.2
Q ss_pred ChHHHHHHHHHHHcCcEEEe
Q 033342 67 GPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+.++.+.++|+++|+.+++
T Consensus 157 ~~~l~~l~~l~~~~g~~liv 176 (353)
T PLN02721 157 VEYTDKVGELAKRHGLKLHI 176 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 34577888999999888854
No 304
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=43.52 E-value=67 Score=21.73 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=30.9
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
+.+|..-.+++++|-|-.. .+....-++.+.-++++|++-...+++.
T Consensus 163 IARaLameP~vmLFDEPTS----------ALDPElVgEVLkv~~~LAeEgrTMv~VT 209 (256)
T COG4598 163 IARALAMEPEVMLFDEPTS----------ALDPELVGEVLKVMQDLAEEGRTMVVVT 209 (256)
T ss_pred HHHHHhcCCceEeecCCcc----------cCCHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 3445556778888877554 2222244678888999999877766554
No 305
>PLN02231 alanine transaminase
Probab=43.48 E-value=1.1e+02 Score=23.64 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHC--CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 23 NFATCSRLVKEAASA--GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 23 n~~~~~~~~~~a~~~--~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
+++.+++.++.+... ++++++++=-..++|.. .+.+.++.+.++|++++++|+.=
T Consensus 254 d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~v----------ls~e~l~~Iv~~a~~~~l~lI~D 310 (534)
T PLN02231 254 EISELKKQLEDARSKGITVRALVVINPGNPTGQV----------LAEENQRDIVEFCKQEGLVLLAD 310 (534)
T ss_pred CHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcC----------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 345566666554443 46777765223334432 34566788888899988877643
No 306
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=43.42 E-value=45 Score=22.25 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=31.1
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. +-+. .....+.+.+.+++++ +..+++-+.... .-..+-+..++++ +|+++
T Consensus 158 ~~~p~llllDEP~~--gLD~--------~~~~~~~~~l~~~~~~-~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~ 221 (224)
T cd03220 158 ALEPDILLIDEVLA--VGDA--------AFQEKCQRRLRELLKQ-GKTVILVSHDPS--SIKRLCDRALVLE-KGKIR 221 (224)
T ss_pred hcCCCEEEEeCCcc--cCCH--------HHHHHHHHHHHHHHhC-CCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34667777766553 1110 0112345566666554 555544433221 1113446667775 68764
No 307
>PRK06836 aspartate aminotransferase; Provisional
Probab=43.30 E-value=86 Score=22.78 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=24.6
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH------cCcEEEe
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE------SSMWLSL 86 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~------~~~~ii~ 86 (121)
..++++|+++-...++|.. .+.+..+.+.++|++ ++++|+.
T Consensus 166 ~~~~~~v~~~~p~NPtG~~----------~~~~~~~~l~~la~~~~~~~~~~~~ii~ 212 (394)
T PRK06836 166 TPKTKAVIINSPNNPTGVV----------YSEETLKALAALLEEKSKEYGRPIYLIS 212 (394)
T ss_pred CcCceEEEEeCCCCCCCcC----------CCHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 3457777765433334432 234557778888887 7777763
No 308
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=43.07 E-value=76 Score=20.62 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=26.9
Q ss_pred EEEEEEeccccCHHHHHHHHHHHHHHHHHCC-CcEEEccCCcc
Q 033342 8 RVAVAQMTSINDLAANFATCSRLVKEAASAG-AKLLCFPENFS 49 (121)
Q Consensus 8 ~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~-~dlvv~PE~~~ 49 (121)
||+++|+..+++.+.-.+.-++.=+.|..-. -.+++.|---.
T Consensus 1 Kv~ivQ~pYlGd~~a~r~mGerIGRaaQ~FEV~eLiiap~~~v 43 (173)
T PF14419_consen 1 KVVIVQMPYLGDLKACRKMGERIGRAAQAFEVKELIIAPKEKV 43 (173)
T ss_pred CeeEEeccccCCHHHHHHHHHHHhHHHhhcchheEEEeccCcc
Confidence 6899999999887755444444444333223 47888886554
No 309
>PRK06724 hypothetical protein; Provisional
Probab=43.04 E-value=75 Score=19.18 Aligned_cols=47 Identities=13% Similarity=0.098 Sum_probs=29.7
Q ss_pred CChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 66 DGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
+.+-++.+.+.+++.|+.++.+- ... ...+.-+=++++.+|+|..+.
T Consensus 73 ~~~dvd~~~~~l~~~G~~~~~~p-~~~-~~~~~g~~~~~f~DPdG~~iE 119 (128)
T PRK06724 73 NRKVVDEVAEFLSSTKIKIIRGP-MEM-NHYSEGYYTIDFYDPNGFIIE 119 (128)
T ss_pred ChHHHHHHHHHHHHCCCEEecCC-ccc-CCCCCCEEEEEEECCCCCEEE
Confidence 44567888888888998886552 221 111112347789999997764
No 310
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=43.02 E-value=93 Score=22.86 Aligned_cols=16 Identities=6% Similarity=-0.003 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCcEEE
Q 033342 70 MQGYCSLARESSMWLS 85 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii 85 (121)
++.+.++|+++++.++
T Consensus 192 ~~~I~~l~~~~g~~vi 207 (424)
T PLN02855 192 VEDIVHWAHAVGAKVL 207 (424)
T ss_pred HHHHHHHHHHcCCEEE
Confidence 3567888888887765
No 311
>PLN02412 probable glutathione peroxidase
Probab=43.00 E-value=28 Score=22.19 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=13.5
Q ss_pred EEEEECCCCCEEeeee
Q 033342 102 THVLLDDAGNIRSTYR 117 (121)
Q Consensus 102 s~~~i~~~G~i~~~y~ 117 (121)
+.++|+++|+++.++.
T Consensus 133 ~tflId~~G~vv~~~~ 148 (167)
T PLN02412 133 TKFLVSKEGKVVQRYA 148 (167)
T ss_pred eeEEECCCCcEEEEEC
Confidence 6899999999987654
No 312
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=42.94 E-value=65 Score=22.99 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=11.3
Q ss_pred HCCCcEEEccCCcc
Q 033342 36 SAGAKLLCFPENFS 49 (121)
Q Consensus 36 ~~~~dlvv~PE~~~ 49 (121)
+.++|+++.||.-.
T Consensus 182 a~gad~iliPE~~~ 195 (301)
T TIGR02482 182 ATGAEIIIIPEFDY 195 (301)
T ss_pred HcCCCEEEECCCCC
Confidence 45899999999743
No 313
>PRK06855 aminotransferase; Validated
Probab=42.89 E-value=1.1e+02 Score=22.76 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=24.6
Q ss_pred CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 38 GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 38 ~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
++.+++++--..++|.. .+.+.++.+.++|++++++|+
T Consensus 171 ~~~~i~l~~P~NPTG~~----------~s~~~~~~l~~~a~~~~~~II 208 (433)
T PRK06855 171 SIAGILLINPDNPTGAV----------YPKEILREIVDIAREYDLFII 208 (433)
T ss_pred CceEEEEECCCCCCCcC----------CCHHHHHHHHHHHHHcCCEEE
Confidence 45666666434445543 345667788888888888875
No 314
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=42.82 E-value=48 Score=19.82 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=15.3
Q ss_pred ceEEEEEEECCCCCEEeeee
Q 033342 98 RLCNTHVLLDDAGNIRSTYR 117 (121)
Q Consensus 98 ~~~Ns~~~i~~~G~i~~~y~ 117 (121)
...-++++++++|+++..|.
T Consensus 108 ~~~p~~~lid~~g~i~~~~~ 127 (140)
T cd02971 108 LAARATFIIDPDGKIRYVEV 127 (140)
T ss_pred ceeEEEEEECCCCcEEEEEe
Confidence 34567899999999977653
No 315
>TIGR03673 rpl14p_arch 50S ribosomal protein L14P. Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L24e, part of which may contact the 16S rRNA in 2 intersubunit bridges.
Probab=42.77 E-value=27 Score=21.77 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.9
Q ss_pred EEEEEECCCCCEEeee
Q 033342 101 NTHVLLDDAGNIRSTY 116 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~y 116 (121)
|++++++++|+.+++.
T Consensus 92 Na~VLin~~~~P~GTR 107 (131)
T TIGR03673 92 NAVVIVTPDGEPKGTE 107 (131)
T ss_pred cEEEEECCCCCEeeeE
Confidence 9999999999988763
No 316
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=42.74 E-value=28 Score=21.53 Aligned_cols=17 Identities=24% Similarity=0.528 Sum_probs=14.1
Q ss_pred EEEEEECCCCCEEeeee
Q 033342 101 NTHVLLDDAGNIRSTYR 117 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~y~ 117 (121)
.++++|+++|+++..|.
T Consensus 121 ~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 121 RISFLIDADGKIEHVFD 137 (154)
T ss_pred eEEEEECCCCEEEEEEc
Confidence 56799999999987765
No 317
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=42.33 E-value=1e+02 Score=22.60 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=24.1
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
..++++|+++=-..++|.. .+.+.++.+.++|++++++|+.=
T Consensus 175 ~~~~~~i~~~~p~NPtG~~----------~s~~~~~~l~~~a~~~~~~ii~D 216 (412)
T PTZ00433 175 DDRTKALIMTNPSNPCGSN----------FSRKHVEDIIRLCEELRLPLISD 216 (412)
T ss_pred ccCceEEEEeCCCCCCCcc----------cCHHHHHHHHHHHHHcCCeEEEe
Confidence 3456766664323333321 23345677788888888877543
No 318
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=42.33 E-value=18 Score=21.41 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHCCCcE-EEccCCcc
Q 033342 23 NFATCSRLVKEAASAGAKL-LCFPENFS 49 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dl-vv~PE~~~ 49 (121)
+......+++-|.+.+.|+ ||-||.-+
T Consensus 47 ~~~d~~~l~~~a~~~~idlvvvGPE~pL 74 (100)
T PF02844_consen 47 DITDPEELADFAKENKIDLVVVGPEAPL 74 (100)
T ss_dssp -TT-HHHHHHHHHHTTESEEEESSHHHH
T ss_pred CCCCHHHHHHHHHHcCCCEEEECChHHH
Confidence 3445555555566777776 45566554
No 319
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=42.32 E-value=1.1e+02 Score=21.03 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=39.7
Q ss_pred ccEEEEEEeccc-cCHHHHHHHHHHH--------HHHHHHC-CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHH
Q 033342 6 SVRVAVAQMTSI-NDLAANFATCSRL--------VKEAASA-GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCS 75 (121)
Q Consensus 6 ~~~ia~vQ~~~~-~~~~~n~~~~~~~--------~~~a~~~-~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (121)
++|||+++..-+ .|.+ ....+... ....... +.|.||+|=.|.+..|....+ .. --.+..+.+.+
T Consensus 2 ~~kvaVi~fpGtN~d~d-~~~A~~~aG~~~~~V~~~d~~~~~~~d~vv~pGGFSyGDyLr~Ga---ia-a~~~v~~~v~~ 76 (231)
T COG0047 2 RPKVAVLRFPGTNCDYD-MAAAFERAGFEAEDVWHSDLLLGRDFDGVVLPGGFSYGDYLRAGA---IA-AIAPVMDEVRE 76 (231)
T ss_pred CceEEEEEcCCcCchHH-HHHHHHHcCCCceEEEeeecccCCCccEEEEcCCCCcccccCcch---HH-hhHHHHHHHHH
Confidence 589999998865 3332 22222210 0001122 588999998887444443221 11 12677888888
Q ss_pred HHHHcCcEE
Q 033342 76 LARESSMWL 84 (121)
Q Consensus 76 ~a~~~~~~i 84 (121)
++.+ +..+
T Consensus 77 ~a~~-g~~v 84 (231)
T COG0047 77 FAEK-GKPV 84 (231)
T ss_pred HHHC-CCeE
Confidence 8874 4434
No 320
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=42.25 E-value=35 Score=17.42 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=13.2
Q ss_pred EEEEEECCCCCEEeeeec
Q 033342 101 NTHVLLDDAGNIRSTYRK 118 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~y~K 118 (121)
|.++++.++|+.+....|
T Consensus 6 ~~aiVlT~dGeF~~ik~~ 23 (56)
T PF12791_consen 6 KYAIVLTPDGEFIKIKRK 23 (56)
T ss_pred CEEEEEcCCCcEEEEeCC
Confidence 678888889987655444
No 321
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=42.23 E-value=66 Score=18.31 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
+-++.+.+.+.+.++.++.+ ... ...|+ +.++.+|+|..+..|
T Consensus 71 ~~~~~~~~~~~~~g~~v~~~-~~~--~~~g~---~~~~~DPdGn~ie~~ 113 (114)
T cd07261 71 AAVDALYAEWQAKGVKIIQE-PTE--MDFGY---TFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHHHHHHHHHCCCeEecC-ccc--cCCcc---EEEEECCCCCEEEee
Confidence 34566666667788888654 222 13332 578999999887665
No 322
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=42.23 E-value=86 Score=23.58 Aligned_cols=25 Identities=4% Similarity=0.133 Sum_probs=19.9
Q ss_pred CCChHHHHHHHHHHHcCcEEEeccc
Q 033342 65 LDGPIMQGYCSLARESSMWLSLGGF 89 (121)
Q Consensus 65 ~~~~~~~~l~~~a~~~~~~ii~G~~ 89 (121)
.+.+.++.+.++|+++++.++.=..
T Consensus 189 fsReeLe~ia~l~~k~~~lvisDev 213 (420)
T KOG0257|consen 189 FSREELERIAELCKKHGLLVISDEV 213 (420)
T ss_pred cCHHHHHHHHHHHHHCCEEEEEhhH
Confidence 4567899999999999987765543
No 323
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=42.14 E-value=82 Score=21.75 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHCCCc-EEEccCCc
Q 033342 23 NFATCSRLVKEAASAGAK-LLCFPENF 48 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~d-lvv~PE~~ 48 (121)
+.+...++.+.|.+.|+| +++.|-..
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP~y 103 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPPYY 103 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCcC
Confidence 445677777888888998 45555443
No 324
>PRK00915 2-isopropylmalate synthase; Validated
Probab=42.06 E-value=1.5e+02 Score=22.83 Aligned_cols=32 Identities=16% Similarity=-0.003 Sum_probs=27.8
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.+++++.+.+.++.|++.|.++.+-||.+.
T Consensus 113 ~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~ 144 (513)
T PRK00915 113 MSREEVLEMAVEAVKYARSYTDDVEFSAEDAT 144 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 46788999999999999999999988888664
No 325
>PRK07683 aminotransferase A; Validated
Probab=42.01 E-value=90 Score=22.64 Aligned_cols=21 Identities=5% Similarity=0.199 Sum_probs=15.4
Q ss_pred ChHHHHHHHHHHHcCcEEEec
Q 033342 67 GPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii~G 87 (121)
.+.++.+.++|+++++.++.=
T Consensus 180 ~~~~~~l~~~~~~~~~~ii~D 200 (387)
T PRK07683 180 KEELQDIADVLKDKNIFVLSD 200 (387)
T ss_pred HHHHHHHHHHHHHcCeEEEEe
Confidence 345677888899988877644
No 326
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=41.97 E-value=64 Score=21.74 Aligned_cols=41 Identities=15% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.+++++ +..+++-+.... .-..+.+..+++. +|+++
T Consensus 183 l~~~l~~~~~~-~~tvi~~tH~~~--~~~~~~d~i~~l~-~G~i~ 223 (250)
T PRK11264 183 VLNTIRQLAQE-KRTMVIVTHEMS--FARDVADRAIFMD-QGRIV 223 (250)
T ss_pred HHHHHHHHHhc-CCEEEEEeCCHH--HHHHhcCEEEEEE-CCEEE
Confidence 33444455443 555544432221 1123456777776 67664
No 327
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=41.97 E-value=60 Score=21.55 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 169 ~l~~~l~~~~~~~~~tii~~sH~~~--~~~~~~d~v~~l~-~g~i~ 211 (230)
T TIGR03410 169 DIGRVIRRLRAEGGMAILLVEQYLD--FARELADRYYVME-RGRVV 211 (230)
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3444555555544555555432220 1112345566665 67664
No 328
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=41.91 E-value=52 Score=25.04 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
.+.+.+.+++++++..+++-+.... .-..+.+..+++. +|+++.
T Consensus 465 ~l~~~l~~l~~~~g~tvi~vsHd~~--~~~~~~d~i~~l~-~G~i~~ 508 (520)
T TIGR03269 465 DVTHSILKAREEMEQTFIIVSHDMD--FVLDVCDRAALMR-DGKIVK 508 (520)
T ss_pred HHHHHHHHHHHHcCcEEEEEeCCHH--HHHHhCCEEEEEE-CCEEEE
Confidence 4555666666666766655543321 1123456667775 687653
No 329
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=41.89 E-value=87 Score=19.62 Aligned_cols=66 Identities=9% Similarity=0.008 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHH--HHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 20 LAANFATCSRLVKEA--ASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a--~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.+.-.+.+.++++.+ ...++.+|+..=......................+.+.++++|+++++.++
T Consensus 84 ~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~a~~~~~~~i 151 (191)
T cd01834 84 LEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPLPDGAEYNANLAAYADAVRELAAENGVAFV 151 (191)
T ss_pred HHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCeEE
Confidence 444444555555554 355788777532111001000000000011223556777888999887765
No 330
>PRK07568 aspartate aminotransferase; Provisional
Probab=41.86 E-value=89 Score=22.56 Aligned_cols=19 Identities=11% Similarity=0.254 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 033342 68 PIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~ 86 (121)
+.++.+.++|+++++.++.
T Consensus 182 ~~~~~i~~~~~~~~~~ii~ 200 (397)
T PRK07568 182 EELEMLAEIAKKHDLFLIS 200 (397)
T ss_pred HHHHHHHHHHHHCCcEEEE
Confidence 3467788888888887754
No 331
>PRK08912 hypothetical protein; Provisional
Probab=41.82 E-value=1e+02 Score=22.29 Aligned_cols=21 Identities=0% Similarity=-0.141 Sum_probs=15.7
Q ss_pred CChHHHHHHHHHHHcCcEEEe
Q 033342 66 DGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+.+.++.+.++|+++++.++.
T Consensus 177 s~~~~~~i~~~~~~~~~~ii~ 197 (387)
T PRK08912 177 PREELALLAEFCQRHDAVAIC 197 (387)
T ss_pred CHHHHHHHHHHHHHCCeEEEE
Confidence 335577888999999987754
No 332
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=41.82 E-value=55 Score=24.03 Aligned_cols=42 Identities=2% Similarity=0.117 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+.+.++.++.++.+++-+.... +--.+-+..++++ +|++.
T Consensus 188 l~~~l~~l~~~~g~tii~vTHd~~--ea~~laDri~vl~-~G~i~ 229 (377)
T PRK11607 188 MQLEVVDILERVGVTCVMVTHDQE--EAMTMAGRIAIMN-RGKFV 229 (377)
T ss_pred HHHHHHHHHHhcCCEEEEEcCCHH--HHHHhCCEEEEEe-CCEEE
Confidence 344556666777777665543221 1113345556665 56664
No 333
>PRK08571 rpl14p 50S ribosomal protein L14P; Reviewed
Probab=41.72 E-value=28 Score=21.70 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=13.9
Q ss_pred EEEEEECCCCCEEeee
Q 033342 101 NTHVLLDDAGNIRSTY 116 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~y 116 (121)
|++++++++|+.+++.
T Consensus 93 Na~VLin~~~~p~GTR 108 (132)
T PRK08571 93 NAAVIVTPEGTPKGTE 108 (132)
T ss_pred cEEEEECCCCCEeeeE
Confidence 9999999999988763
No 334
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=41.56 E-value=40 Score=25.32 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=19.7
Q ss_pred CcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 39 AKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 39 ~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
+||||||-+-- .+-.+-++|-++++.|+
T Consensus 161 PDiVvWP~chd-------------------evVkiv~lA~khN~~ii 188 (613)
T KOG1233|consen 161 PDIVVWPKCHD-------------------EVVKIVELAMKHNCAII 188 (613)
T ss_pred CceEecccchH-------------------HHHHHHHHHhhcCeEEE
Confidence 78888887442 24457788889987774
No 335
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=41.43 E-value=1.2e+02 Score=22.32 Aligned_cols=44 Identities=16% Similarity=0.211 Sum_probs=26.2
Q ss_pred HHHHHCCCcEEEc-cCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc-CcEEE
Q 033342 32 KEAASAGAKLLCF-PENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES-SMWLS 85 (121)
Q Consensus 32 ~~a~~~~~dlvv~-PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~-~~~ii 85 (121)
+++...+++++++ |=-..++|.. .+.+.++.+.++|+++ +++|+
T Consensus 205 ~~~~~~~~k~i~~~p~p~NPTG~~----------~s~~~~~~l~~la~~~~~~~ii 250 (431)
T PRK15481 205 ERALAQGARAVILTPRAHNPTGCS----------LSARRAAALRNLLARYPQVLVI 250 (431)
T ss_pred HHHHhcCCCEEEECCCCCCCCCcc----------CCHHHHHHHHHHHHhcCCceEE
Confidence 3333446776555 4444444432 3445567888888888 77775
No 336
>KOG3406 consensus 40S ribosomal protein S12 [Translation, ribosomal structure and biogenesis]
Probab=41.41 E-value=87 Score=19.46 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=26.3
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
+.++.|+|+-|.+. ++.+......++.++++++|
T Consensus 48 krqA~lcvLaencd----------------ep~yvKLVeALcaeh~ipli 81 (134)
T KOG3406|consen 48 KRQAHLCVLAENCD----------------EPMYVKLVEALCAEHQIPLI 81 (134)
T ss_pred hCceeEEEEeccCC----------------chHHHHHHHHHHhhcCCCeE
Confidence 45789999998775 34566777888999999885
No 337
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=41.36 E-value=95 Score=23.57 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=10.5
Q ss_pred CCcEEEccCCcc
Q 033342 38 GAKLLCFPENFS 49 (121)
Q Consensus 38 ~~dlvv~PE~~~ 49 (121)
+||+++.||...
T Consensus 272 ~ad~ilIPE~~f 283 (443)
T PRK06830 272 DVNFVLIPEVPF 283 (443)
T ss_pred CCCEEEecCCCC
Confidence 799999999775
No 338
>PRK05483 rplN 50S ribosomal protein L14; Validated
Probab=41.22 E-value=29 Score=21.29 Aligned_cols=16 Identities=44% Similarity=0.621 Sum_probs=13.9
Q ss_pred EEEEEECCCCCEEeee
Q 033342 101 NTHVLLDDAGNIRSTY 116 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~y 116 (121)
|++++++++|+.+++.
T Consensus 82 NavVLin~~~~p~GTr 97 (122)
T PRK05483 82 NAAVLLNNDGEPRGTR 97 (122)
T ss_pred CEEEEECCCCCEeEeE
Confidence 9999999999988763
No 339
>PRK08068 transaminase; Reviewed
Probab=41.04 E-value=98 Score=22.40 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=24.8
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.++++|++.--..++|.. .+.+.++.+.++|++++++|+.
T Consensus 166 ~~~~~v~l~~P~NPTG~~----------~s~~~~~~l~~la~~~~~~ii~ 205 (389)
T PRK08068 166 EKAKLMYLNYPNNPTGAV----------ATKAFFEETVAFAKKHNIGVVH 205 (389)
T ss_pred ccceEEEEECCCCCCCCc----------CCHHHHHHHHHHHHHcCeEEEE
Confidence 356776664212334432 3445677888899999987764
No 340
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=41.00 E-value=1.1e+02 Score=22.23 Aligned_cols=17 Identities=12% Similarity=0.155 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCcEEEe
Q 033342 70 MQGYCSLARESSMWLSL 86 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii~ 86 (121)
++.+.++++++++.+++
T Consensus 178 ~~~i~~~~~~~~~~~iv 194 (403)
T TIGR01979 178 VEEIAKLAHQVGAKVLV 194 (403)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 56788888888877743
No 341
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.89 E-value=46 Score=21.10 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
+..|...+++++++=|-+. +-+ ........+.+.+++++ +..+++-+.... .-..+.+..+++. +|
T Consensus 106 laral~~~p~illlDEPt~--~LD--------~~~~~~l~~~l~~~~~~-g~tiii~th~~~--~~~~~~d~i~~l~-~g 171 (173)
T cd03230 106 LAQALLHDPELLILDEPTS--GLD--------PESRREFWELLRELKKE-GKTILLSSHILE--EAERLCDRVAILN-NG 171 (173)
T ss_pred HHHHHHcCCCEEEEeCCcc--CCC--------HHHHHHHHHHHHHHHHC-CCEEEEECCCHH--HHHHhCCEEEEEe-CC
Confidence 4445677899999999775 211 11122455566666655 554544432220 1112445666665 55
Q ss_pred C
Q 033342 111 N 111 (121)
Q Consensus 111 ~ 111 (121)
+
T Consensus 172 ~ 172 (173)
T cd03230 172 R 172 (173)
T ss_pred C
Confidence 4
No 342
>PTZ00256 glutathione peroxidase; Provisional
Probab=40.79 E-value=33 Score=22.17 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=19.0
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFP 45 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~P 45 (121)
+-+...+..+.++.++-...++.+|.++
T Consensus 54 p~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 54 GLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 4556666667766666666677777776
No 343
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=40.71 E-value=62 Score=21.54 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++++ .+..+++-+.... .-..+.+..++++ +|++.
T Consensus 181 ~l~~~l~~~~~-~~~tii~vsH~~~--~~~~~~d~i~~l~-~G~i~ 222 (236)
T cd03219 181 ELAELIRELRE-RGITVLLVEHDMD--VVMSLADRVTVLD-QGRVI 222 (236)
T ss_pred HHHHHHHHHHH-CCCEEEEEecCHH--HHHHhCCEEEEEe-CCEEE
Confidence 34455555554 4555554433221 1123456677775 67764
No 344
>PRK02628 nadE NAD synthetase; Reviewed
Probab=40.68 E-value=1.9e+02 Score=23.19 Aligned_cols=71 Identities=13% Similarity=-0.013 Sum_probs=35.6
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceE-EEEEEECCCCC
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLC-NTHVLLDDAGN 111 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~-Ns~~~i~~~G~ 111 (121)
..+..|||||+-|=.+. ..... .......+...+.++...++......-...++..| -.+++++ +|+
T Consensus 190 ~la~~GAdIil~psAsp-~~~gk----------~~~r~~l~~~~aar~~~~~v~~n~~~G~~~~~~vf~G~S~I~~-~G~ 257 (679)
T PRK02628 190 YAALAGATVLANLSASN-ITVGK----------ADYRRLLVASQSARCLAAYVYAAAGVGESTTDLAWDGQTLIYE-NGE 257 (679)
T ss_pred HHhcCCCEEEEeCCCCC-cccCc----------HHHHHHHHHHHHHHhCcEEEEEecccccCCCCeEEeCeEEEEc-CCe
Confidence 34467999999886654 11111 01112344555666654454443211001222333 5566776 898
Q ss_pred EEee
Q 033342 112 IRST 115 (121)
Q Consensus 112 i~~~ 115 (121)
++..
T Consensus 258 vla~ 261 (679)
T PRK02628 258 LLAE 261 (679)
T ss_pred EEEe
Confidence 8753
No 345
>TIGR01067 rplN_bact ribosomal protein L14, bacterial/organelle. This model distinguishes bacterial and most organellar examples of ribosomal protein L14 from all archaeal and eukaryotic forms.
Probab=40.63 E-value=31 Score=21.18 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.5
Q ss_pred EEEEEECCCCCEEee
Q 033342 101 NTHVLLDDAGNIRST 115 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~ 115 (121)
|++++++++|+.+++
T Consensus 82 Na~VLin~~~~p~GT 96 (122)
T TIGR01067 82 NACVLINKNKEPRGT 96 (122)
T ss_pred ceEEEECCCCCEeee
Confidence 999999999988776
No 346
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=40.53 E-value=68 Score=23.15 Aligned_cols=13 Identities=31% Similarity=0.508 Sum_probs=10.5
Q ss_pred HCCCcEEEccCCc
Q 033342 36 SAGAKLLCFPENF 48 (121)
Q Consensus 36 ~~~~dlvv~PE~~ 48 (121)
+.+||++++||.-
T Consensus 184 a~~a~~iliPE~~ 196 (324)
T TIGR02483 184 AGGADVILIPEIP 196 (324)
T ss_pred ccCCCEEEecCCC
Confidence 4589999999964
No 347
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=40.51 E-value=61 Score=24.77 Aligned_cols=43 Identities=19% Similarity=0.127 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 194 ~l~~~l~~l~~~~g~tvi~vtHd~~--~~~~~~dri~~l~-~G~i~ 236 (529)
T PRK15134 194 QILQLLRELQQELNMGLLFITHNLS--IVRKLADRVAVMQ-NGRCV 236 (529)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCcHH--HHHHhcCEEEEEE-CCEEE
Confidence 3445566666655666655532220 1113456667775 67764
No 348
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=40.38 E-value=72 Score=21.18 Aligned_cols=42 Identities=7% Similarity=0.111 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++++ .+..+++-+.... .-..+.+..+++. +|++.
T Consensus 171 ~~~~~l~~~~~-~~~tii~~sH~~~--~~~~~~d~i~~l~-~G~i~ 212 (232)
T cd03218 171 DIQKIIKILKD-RGIGVLITDHNVR--ETLSITDRAYIIY-EGKVL 212 (232)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHH--HHHHhCCEEEEEE-CCeEE
Confidence 34444555554 3555544432210 1123456667775 67764
No 349
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=40.35 E-value=80 Score=20.76 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++++ .+..+++-+.... .-..+.+..+++. +|++.
T Consensus 170 ~l~~~l~~~~~-~~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~ 211 (222)
T cd03224 170 EIFEAIRELRD-EGVTILLVEQNAR--FALEIADRAYVLE-RGRVV 211 (222)
T ss_pred HHHHHHHHHHH-CCCEEEEEeCCHH--HHHHhccEEEEee-CCeEE
Confidence 34445555544 3555555533221 1124556677775 68765
No 350
>PRK03202 6-phosphofructokinase; Provisional
Probab=40.27 E-value=80 Score=22.76 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=11.8
Q ss_pred HHCCCcEEEccCCcc
Q 033342 35 ASAGAKLLCFPENFS 49 (121)
Q Consensus 35 ~~~~~dlvv~PE~~~ 49 (121)
.+.+||+++.||.-.
T Consensus 182 la~~a~~iliPE~~~ 196 (320)
T PRK03202 182 IAGGAEVILIPEVPF 196 (320)
T ss_pred HhcCCCEEEeCCCCC
Confidence 345899999999754
No 351
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=40.17 E-value=1.4e+02 Score=21.44 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.5
Q ss_pred CCChHHHHHHHHHHHcCcEEEe
Q 033342 65 LDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 65 ~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+.++++.++++|+++++.+|+
T Consensus 195 ~~~~~l~~l~~lc~~~gillI~ 216 (339)
T PF00202_consen 195 PPPEYLRELRELCREHGILLIA 216 (339)
T ss_dssp E-TTHHHHHHHHHHHTT-EEEE
T ss_pred cccchhhehcccccccccceec
Confidence 4568999999999999998864
No 352
>PTZ00377 alanine aminotransferase; Provisional
Probab=40.14 E-value=1.6e+02 Score=22.19 Aligned_cols=54 Identities=13% Similarity=0.106 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHC--CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 23 NFATCSRLVKEAASA--GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 23 n~~~~~~~~~~a~~~--~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+.+.+++.+..+..+ ++++|++-=-..++|.. .+.+.++.+.++|++++++|+.
T Consensus 201 d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~----------~s~e~~~~i~~~a~~~~~~iI~ 256 (481)
T PTZ00377 201 DQEELEEAYEQAVRNGITPRALVVINPGNPTGQV----------LTRDVMEEIIKFCYEKGIVLMA 256 (481)
T ss_pred CHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcC----------CCHHHHHHHHHHHHHCCCEEEE
Confidence 345555555443333 56665543113334432 3445577788888888887753
No 353
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=40.13 E-value=58 Score=23.84 Aligned_cols=44 Identities=14% Similarity=0.160 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
...+.+.++.++.+..|++-+.... .--++-+..+++. +|+++.
T Consensus 167 ~l~~~l~~l~~~~~~Tii~vTHd~~--ea~~~~drI~vl~-~G~iv~ 210 (363)
T TIGR01186 167 SMQDELKKLQATLQKTIVFITHDLD--EAIRIGDRIVIMK-AGEIVQ 210 (363)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEe-CCEEEe
Confidence 4445555555555666655533221 1113345556665 677653
No 354
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=40.02 E-value=93 Score=22.40 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=24.9
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.++++|++---..++|.. .+.+.++.+.++|+++++.|+.
T Consensus 163 ~~~~~v~i~~P~NPtG~~----------~~~~~~~~i~~~a~~~~~~ii~ 202 (383)
T TIGR03540 163 KKAKLMFINYPNNPTGAV----------APLKFFKELVEFAKEYNIIVCH 202 (383)
T ss_pred ccceEEEEeCCCCCcCcc----------CCHHHHHHHHHHHHHcCEEEEE
Confidence 356666654223334432 3445678899999999987763
No 355
>PRK08392 hypothetical protein; Provisional
Probab=40.00 E-value=86 Score=20.85 Aligned_cols=52 Identities=13% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 26 TCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 26 ~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
.+.+.++.|.+.|-+.+.|-|-+. .... . .-..+++.+.++.++.++.|+.|
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~-~~~~-~--------~~~~y~~~i~~l~~~~~i~il~G 66 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIH-YFTP-S--------KFNAYINEIRQWGEESEIVVLAG 66 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCC-ccch-h--------hHHHHHHHHHHHhhccCceEEEe
Confidence 477888899999999999999874 1110 0 11234455555555567777777
No 356
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=39.91 E-value=57 Score=23.57 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=30.7
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|-+. |-+.. ....+.+.+.++.+ .+..|++.+.... +-.++-+..++++ +|+++
T Consensus 188 ~~~P~lLiLDEPt~--gLD~~--------~r~~l~~~l~~l~~-~g~tilisSH~l~--e~~~~~d~i~il~-~G~i~ 251 (340)
T PRK13536 188 INDPQLLILDEPTT--GLDPH--------ARHLIWERLRSLLA-RGKTILLTTHFME--EAERLCDRLCVLE-AGRKI 251 (340)
T ss_pred hcCCCEEEEECCCC--CCCHH--------HHHHHHHHHHHHHh-CCCEEEEECCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34566666666553 21110 11244555566554 3666665543221 2123455566665 56654
No 357
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=39.90 E-value=75 Score=18.29 Aligned_cols=45 Identities=9% Similarity=-0.084 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
+-++.+.+.+++.|+.+..+ .... ..+ ...+.++.+|+|..+..+
T Consensus 72 ~dv~~~~~~l~~~g~~~~~~-~~~~--~~~-~~~~~~~~DPdG~~ve~~ 116 (121)
T cd07266 72 EDLDKAEAFFQELGLPTEWV-EAGE--EPG-QGRALRVEDPLGFPIEFY 116 (121)
T ss_pred HHHHHHHHHHHHcCCCcccc-cCCc--CCC-CccEEEEECCCCCEEEEE
Confidence 45666666666777766433 1111 222 224789999999887654
No 358
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=39.83 E-value=1.5e+02 Score=21.78 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=26.6
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.+++++++.+.++.|.+.|..+.+-+|...
T Consensus 109 ~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~ 140 (378)
T PRK11858 109 KTREEVLERMVEAVEYAKDHGLYVSFSAEDAS 140 (378)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 45788899999999999999988888887654
No 359
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=39.80 E-value=71 Score=20.82 Aligned_cols=67 Identities=13% Similarity=-0.067 Sum_probs=35.4
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCc-eEEEEEEECCCCC
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAR-LCNTHVLLDDAGN 111 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~-~~Ns~~~i~~~G~ 111 (121)
+|...+++++++=|-+. +-+ ......+.+.+.+++++ +..+++-+.... .-.+ +.+..+++. +|+
T Consensus 117 ral~~~p~illlDEPt~--~LD--------~~~~~~l~~~L~~~~~~-~~tiii~sh~~~--~~~~~~~d~i~~l~-~G~ 182 (200)
T cd03217 117 QLLLLEPDLAILDEPDS--GLD--------IDALRLVAEVINKLREE-GKSVLIITHYQR--LLDYIKPDRVHVLY-DGR 182 (200)
T ss_pred HHHhcCCCEEEEeCCCc--cCC--------HHHHHHHHHHHHHHHHC-CCEEEEEecCHH--HHHHhhCCEEEEEE-CCE
Confidence 34567899999988664 211 11122445556665443 555554432221 2223 456777776 676
Q ss_pred EE
Q 033342 112 IR 113 (121)
Q Consensus 112 i~ 113 (121)
+.
T Consensus 183 i~ 184 (200)
T cd03217 183 IV 184 (200)
T ss_pred EE
Confidence 64
No 360
>PRK08363 alanine aminotransferase; Validated
Probab=39.79 E-value=87 Score=22.74 Aligned_cols=40 Identities=10% Similarity=0.062 Sum_probs=22.6
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+.++|+++--..++|.. .+.+.++.+.++|+++++.++.
T Consensus 165 ~~~~~v~l~~p~NPtG~~----------~~~~~~~~l~~~a~~~~~~li~ 204 (398)
T PRK08363 165 EKTKAIAVINPNNPTGAL----------YEKKTLKEILDIAGEHDLPVIS 204 (398)
T ss_pred cceEEEEEECCCCCCCcC----------cCHHHHHHHHHHHHHcCeEEEE
Confidence 456676665322233332 2334467778888888876653
No 361
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=39.75 E-value=1.4e+02 Score=21.37 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHCCCc-EEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 25 ATCSRLVKEAASAGAK-LLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 25 ~~~~~~~~~a~~~~~d-lvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
+.+.+.++++.+.|+. +|++.+.|. + .+ ..+.+.+.++++++-++..
T Consensus 80 ~~v~~al~e~~~~Gvk~~vIisaGf~----------e-----~g-~~~~~~~~ar~~girviGP 127 (300)
T PLN00125 80 PFAAAAILEAMEAELDLVVCITEGIP----------Q-----HD-MVRVKAALNRQSKTRLIGP 127 (300)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCC----------c-----cc-HHHHHHHHHhhcCCEEECC
Confidence 5667777778888887 567777664 0 11 3455667789999988554
No 362
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=39.75 E-value=1.2e+02 Score=20.69 Aligned_cols=26 Identities=4% Similarity=0.157 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCc
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENF 48 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~ 48 (121)
....+.+.++.|.+.++|+|-++-.+
T Consensus 87 ~~~~i~~Ai~~Ai~~gadIIn~S~g~ 112 (247)
T cd07491 87 TPQSAAKAIEAAVEKKVDIISMSWTI 112 (247)
T ss_pred CHHHHHHHHHHHHHCCCcEEEeeeec
Confidence 45678888999999999999998544
No 363
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.69 E-value=91 Score=19.21 Aligned_cols=20 Identities=10% Similarity=0.219 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCcEEEccC
Q 033342 27 CSRLVKEAASAGAKLLCFPE 46 (121)
Q Consensus 27 ~~~~~~~a~~~~~dlvv~PE 46 (121)
..+.++.|.+.++|+|++.=
T Consensus 42 ~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcC
Confidence 34667777888999998843
No 364
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=39.64 E-value=1.2e+02 Score=20.49 Aligned_cols=60 Identities=7% Similarity=-0.118 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
..+.+.+.++.|..-|+..|.++=...+.....++.. . .--+.++.+.+.|++.|+.+.+
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~---~-~~~~~l~~l~~~A~~~gi~l~l 141 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEAR---A-TLVENLRYAADALDRIGLTLLI 141 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHH---H-HHHHHHHHHHHHHHhcCCEEEE
Confidence 3566777788888889988765322210011111110 0 1123466677788899987754
No 365
>PTZ00054 60S ribosomal protein L23; Provisional
Probab=39.63 E-value=34 Score=21.59 Aligned_cols=16 Identities=19% Similarity=0.511 Sum_probs=13.9
Q ss_pred EEEEEECCCCCEEeee
Q 033342 101 NTHVLLDDAGNIRSTY 116 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~y 116 (121)
|++++++++|+.+++.
T Consensus 100 NA~VLin~~~~p~GTR 115 (139)
T PTZ00054 100 NAGVIVNPKGEMKGSA 115 (139)
T ss_pred cEEEEECCCCCEeeeE
Confidence 9999999999988763
No 366
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=39.42 E-value=42 Score=25.07 Aligned_cols=13 Identities=15% Similarity=0.061 Sum_probs=11.2
Q ss_pred CCCcEEEccCCcc
Q 033342 37 AGAKLLCFPENFS 49 (121)
Q Consensus 37 ~~~dlvv~PE~~~ 49 (121)
.++|++++||.-.
T Consensus 230 ~gad~ilIPE~~~ 242 (403)
T PRK06555 230 WDIHAVYLPEMAF 242 (403)
T ss_pred CCCcEEEccCCCC
Confidence 6899999999754
No 367
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=39.38 E-value=94 Score=21.14 Aligned_cols=17 Identities=18% Similarity=0.042 Sum_probs=12.6
Q ss_pred HHHHHCCCcEEEccCCc
Q 033342 32 KEAASAGAKLLCFPENF 48 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~ 48 (121)
+.|...++|++.-|+.-
T Consensus 96 R~AvE~~VDVL~~P~~~ 112 (216)
T PRK03892 96 RYAIERGVDAIISPWVG 112 (216)
T ss_pred HHHHhcccceeeccccc
Confidence 33445589999999975
No 368
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=39.35 E-value=1.4e+02 Score=21.76 Aligned_cols=41 Identities=7% Similarity=0.047 Sum_probs=22.4
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
..++++|+++=-..++|.. .+.+.++.+.++|+++++.++.
T Consensus 166 ~~~~~~v~~~~p~NPtG~~----------~~~~~~~~l~~~a~~~~~~ii~ 206 (401)
T TIGR01264 166 DEKTAALIVNNPSNPCGSV----------FSRQHLEEILAVAERQCLPIIA 206 (401)
T ss_pred ccCceEEEEcCCCCCCCCC----------CCHHHHHHHHHHHHHCCCEEEE
Confidence 3456777664333334432 2334466677777777776653
No 369
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=39.32 E-value=66 Score=21.88 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
..+.+.++++ .+..+++-+.... .-..+.+..++++ +|+++
T Consensus 191 l~~~l~~l~~-~g~tiiivsH~~~--~~~~~~d~i~~l~-~G~i~ 231 (257)
T PRK10619 191 VLRIMQQLAE-EGKTMVVVTHEMG--FARHVSSHVIFLH-QGKIE 231 (257)
T ss_pred HHHHHHHHHh-cCCEEEEEeCCHH--HHHHhcCEEEEEE-CCEEE
Confidence 3344444443 3666655533221 1123446667776 67765
No 370
>PRK09082 methionine aminotransferase; Validated
Probab=39.32 E-value=1.1e+02 Score=22.22 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 033342 68 PIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~ 86 (121)
+-++.+.++|++++++++.
T Consensus 183 ~~~~~i~~~a~~~~i~li~ 201 (386)
T PRK09082 183 ADMRALWQLIAGTDIYVLS 201 (386)
T ss_pred HHHHHHHHHHHHCCEEEEE
Confidence 4577889999999988864
No 371
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=39.31 E-value=75 Score=24.39 Aligned_cols=17 Identities=6% Similarity=0.126 Sum_probs=11.0
Q ss_pred ceEEEEEEECCCCCEEee
Q 033342 98 RLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 98 ~~~Ns~~~i~~~G~i~~~ 115 (121)
+..+..++++ +|++...
T Consensus 514 ~~~d~i~~l~-~G~i~e~ 530 (547)
T PRK10522 514 IHADRLLEMR-NGQLSEL 530 (547)
T ss_pred HhCCEEEEEE-CCEEEEe
Confidence 3467777776 6877543
No 372
>PRK07777 aminotransferase; Validated
Probab=39.28 E-value=1.1e+02 Score=22.18 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 033342 68 PIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~ 86 (121)
+.++.+.++|+++++.++.
T Consensus 179 ~~~~~l~~~~~~~~~~li~ 197 (387)
T PRK07777 179 AELAAIAELAVEHDLLVIT 197 (387)
T ss_pred HHHHHHHHHHHhcCcEEEE
Confidence 4577888889888887754
No 373
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=39.24 E-value=64 Score=21.62 Aligned_cols=41 Identities=17% Similarity=0.271 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.+++++ +..+++-+.... .-..+.+..+++. +|+++
T Consensus 175 l~~~l~~~~~~-~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~ 215 (240)
T PRK09493 175 VLKVMQDLAEE-GMTMVIVTHEIG--FAEKVASRLIFID-KGRIA 215 (240)
T ss_pred HHHHHHHHHHc-CCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34445555443 555544432221 1113446666775 67764
No 374
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=39.23 E-value=1.1e+02 Score=22.17 Aligned_cols=17 Identities=18% Similarity=0.274 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCcEEEe
Q 033342 70 MQGYCSLARESSMWLSL 86 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii~ 86 (121)
++.+.++|+++++.+++
T Consensus 179 ~~~i~~l~~~~g~~~iv 195 (401)
T PRK10874 179 LARAITLAHQAGMVVMV 195 (401)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 56788899999987754
No 375
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=39.18 E-value=34 Score=23.46 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=19.6
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFP 45 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~P 45 (121)
.-....+..+.++.++....|..+|-++
T Consensus 112 p~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 112 GLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred cchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3455567777777777667788888776
No 376
>smart00642 Aamy Alpha-amylase domain.
Probab=39.16 E-value=1e+02 Score=19.70 Aligned_cols=68 Identities=10% Similarity=0.015 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCccC-------CCCCCchhhhcccC-CCChHHHHHHHHHHHcCcEEEeccce
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFSY-------VGDKDADNIKIAEP-LDGPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~~-------~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
+++.+.+.+...++.|++-|.++=.+-. .||...+.....+. -..+-++.+.+.|++.++.+++=.+.
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~ 92 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVI 92 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 4555555555666789998877654321 23433333222221 13355677778888999998765433
No 377
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=39.04 E-value=73 Score=21.69 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHCCC--cEEEccCCccCCCCCCchhhhcc----------cCCCChHHHHHHHHHHHcCcEEEe
Q 033342 23 NFATCSRLVKEAASAGA--KLLCFPENFSYVGDKDADNIKIA----------EPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~--dlvv~PE~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
++..+.+.+++|..+|+ -|+++--+-....|..+...+.+ .....+....+++-|+++++.++.
T Consensus 78 tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k~gislvp 153 (268)
T KOG4175|consen 78 TLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARKHGISLVP 153 (268)
T ss_pred cHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHhcCceEEE
Confidence 57888888998887764 45665544321222222221111 124567778899999999987753
No 378
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=39.04 E-value=55 Score=24.33 Aligned_cols=43 Identities=7% Similarity=0.161 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++.++.+..|++-+.... .-.++.+..+++. +|+++
T Consensus 202 ~l~~~L~~l~~~~g~TIIivTHd~~--~~~~~~Dri~vL~-~G~i~ 244 (400)
T PRK10070 202 EMQDELVKLQAKHQRTIVFISHDLD--EAMRIGDRIAIMQ-NGEVV 244 (400)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3445555665555666655432220 1123445666665 67664
No 379
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=39.03 E-value=71 Score=20.83 Aligned_cols=41 Identities=7% Similarity=0.127 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.++++ .+..+++-+.... .-..+.+..++++ +|+++
T Consensus 165 l~~~l~~~~~-~~~tii~~tH~~~--~~~~~~d~v~~l~-~g~i~ 205 (208)
T cd03268 165 LRELILSLRD-QGITVLISSHLLS--EIQKVADRIGIIN-KGKLI 205 (208)
T ss_pred HHHHHHHHHH-CCCEEEEEcCCHH--HHHHhcCEEEEEE-CCEEE
Confidence 3344455544 4555554432221 1123456677776 67764
No 380
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=38.96 E-value=1.8e+02 Score=22.52 Aligned_cols=70 Identities=10% Similarity=0.022 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEccCCccC----CCCCCchhhhcccC-CCChHHHHHHHHHHHcCcEEEeccce
Q 033342 21 AANFATCSRLVKEAASAGAKLLCFPENFSY----VGDKDADNIKIAEP-LDGPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 21 ~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~----~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
..+++.+.+.+...++-|++.|.++=.+.. .||...+....... -..+-+..|.+.|++.|+.+++=.+.
T Consensus 23 ~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 23 TGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred ccCHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 345667777777777889998876654431 24554444333332 23456777888889999998766443
No 381
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=38.84 E-value=79 Score=21.45 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.+++++ +..+++-+.... .-.++.+..++++ +|++.
T Consensus 177 l~~~l~~l~~~-~~tiii~tH~~~--~~~~~~d~i~~l~-~G~i~ 217 (255)
T PRK11231 177 LMRLMRELNTQ-GKTVVTVLHDLN--QASRYCDHLVVLA-NGHVM 217 (255)
T ss_pred HHHHHHHHHHC-CCEEEEEECCHH--HHHHhcCEEEEEE-CCeEE
Confidence 34445554433 555555532220 1123556777775 67664
No 382
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.50 E-value=1.4e+02 Score=21.07 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 22 ANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 22 ~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.|.+...+.+.-|++.|-+-+++=|.+-. .......+........-+..+.+-|++.|+-|+
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~--~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~ 90 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYG--WEKDDDFDFTKPIPDFDLPELVDYAKEKGVGIW 90 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCG--S--TTT--TT-B-TT--HHHHHHHHHHTT-EEE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecccccc--ccccccccccccCCccCHHHHHHHHHHcCCCEE
Confidence 47889999999999999999999888851 111111123333455667888888888886553
No 383
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=38.48 E-value=56 Score=20.93 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=33.8
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
+..|...+++++++=|-+. +-+. .......+.+.+++++ +..+++-+.... .-.++.+..+++. +|
T Consensus 115 la~al~~~p~llllDEP~~--~LD~--------~~~~~l~~~l~~~~~~-~~tiii~sh~~~--~~~~~~d~v~~l~-~G 180 (182)
T cd03215 115 LARWLARDPRVLILDEPTR--GVDV--------GAKAEIYRLIRELADA-GKAVLLISSELD--ELLGLCDRILVMY-EG 180 (182)
T ss_pred HHHHHccCCCEEEECCCCc--CCCH--------HHHHHHHHHHHHHHHC-CCEEEEEeCCHH--HHHHhCCEEEEec-CC
Confidence 3345567899999999765 2111 1122344555555443 445544432210 1123455666665 56
Q ss_pred C
Q 033342 111 N 111 (121)
Q Consensus 111 ~ 111 (121)
+
T Consensus 181 ~ 181 (182)
T cd03215 181 R 181 (182)
T ss_pred c
Confidence 4
No 384
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=38.47 E-value=1.5e+02 Score=21.71 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHcCcEEEecccee
Q 033342 67 GPIMQGYCSLARESSMWLSLGGFQE 91 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii~G~~~~ 91 (121)
....+.+.+.|++.++.|+.|....
T Consensus 108 ~~i~~si~e~a~~~Gv~IvtGdTkV 132 (339)
T COG0309 108 ERILKSIDEEAEEAGVSIVTGDTKV 132 (339)
T ss_pred HHHHHHHHHHHHHcCCeEEccCcee
Confidence 3566778889999999999996544
No 385
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=38.44 E-value=90 Score=26.13 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=26.3
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
++.++|--+++|||... +... ...++..-...+|.+.++.|+
T Consensus 518 ~~l~~g~~~~ifPeGtr-~~~~----------~~~~f~~g~~~~a~~~~~~i~ 559 (1140)
T PRK06814 518 KEVQKGEKLVIFPEGRI-TVTG----------SLMKIYDGPGMIADKAGAMVV 559 (1140)
T ss_pred HHHHCCCEEEEeCCCCC-CCCC----------CccccchHHHHHHHHCCCCEE
Confidence 45578889999999986 2111 112333444566777787774
No 386
>PLN02884 6-phosphofructokinase
Probab=38.28 E-value=92 Score=23.37 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=10.9
Q ss_pred HCC-CcEEEccCCcc
Q 033342 36 SAG-AKLLCFPENFS 49 (121)
Q Consensus 36 ~~~-~dlvv~PE~~~ 49 (121)
+.+ ||+++.||.-+
T Consensus 240 A~g~ad~ilIPE~~f 254 (411)
T PLN02884 240 ASGQVDICLIPEVPF 254 (411)
T ss_pred hcCCCCEEEeCCCCC
Confidence 346 99999999754
No 387
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=38.23 E-value=1e+02 Score=19.35 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=28.0
Q ss_pred HHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeeec
Q 033342 70 MQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYRK 118 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~K 118 (121)
++.+.+.+++.|+.++.+ .+.....++..+.++++-+|+|..+..+.+
T Consensus 104 ida~~~~l~~~G~~~~~~-~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 151 (162)
T TIGR03645 104 VEGLAERIVAAGGKKRMP-VPRYYYPGEKPYRMIYMEDPFGNILEIYSH 151 (162)
T ss_pred HHHHHHHHHHcCCcccCC-CccccCCCCCceEEEEEECCCCCEEEEEEc
Confidence 556666667777655433 221111122245688999999988766543
No 388
>PTZ00320 ribosomal protein L14; Provisional
Probab=38.19 E-value=35 Score=22.53 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=13.6
Q ss_pred EEEEEECCCCCEEee
Q 033342 101 NTHVLLDDAGNIRST 115 (121)
Q Consensus 101 Ns~~~i~~~G~i~~~ 115 (121)
|++++++++|+.+++
T Consensus 148 NAaVLIN~qgePlGT 162 (188)
T PTZ00320 148 NTCILMNDQRVPLGT 162 (188)
T ss_pred cEEEEECCCCCEeee
Confidence 999999999998876
No 389
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=38.10 E-value=87 Score=23.85 Aligned_cols=44 Identities=14% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeee
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
+.+.+.+++++ +..+++-+.... .-..+-+..+++. +|+++...
T Consensus 442 l~~~l~~l~~~-g~tiIivsHd~~--~i~~~~d~i~~l~-~G~i~~~~ 485 (510)
T PRK15439 442 IYQLIRSIAAQ-NVAVLFISSDLE--EIEQMADRVLVMH-QGEISGAL 485 (510)
T ss_pred HHHHHHHHHhC-CCEEEEECCCHH--HHHHhCCEEEEEE-CCEEEEEE
Confidence 34445555543 555555543321 1123446667775 68776544
No 390
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=38.08 E-value=40 Score=18.79 Aligned_cols=18 Identities=33% Similarity=0.384 Sum_probs=13.9
Q ss_pred eEEEEEEECCCCCEEeee
Q 033342 99 LCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 99 ~~Ns~~~i~~~G~i~~~y 116 (121)
.+-+.++++++|+++..|
T Consensus 97 ~~P~~~l~d~~g~v~~~~ 114 (116)
T cd02966 97 GLPTTFLIDRDGRIRARH 114 (116)
T ss_pred ccceEEEECCCCcEEEEe
Confidence 455678999999987655
No 391
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=37.96 E-value=1.8e+02 Score=22.14 Aligned_cols=70 Identities=13% Similarity=0.175 Sum_probs=46.3
Q ss_pred cEEEEEEeccccCHHHHHHHHHHHHHHHHHCCCcE--EEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEE
Q 033342 7 VRVAVAQMTSINDLAANFATCSRLVKEAASAGAKL--LCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWL 84 (121)
Q Consensus 7 ~~ia~vQ~~~~~~~~~n~~~~~~~~~~a~~~~~dl--vv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~i 84 (121)
++|.-++........-..+.+++..++|.+.+..+ |++--=..+.| ...+.+.+..+..+|.+.++.+
T Consensus 193 veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG----------~~~~~e~L~~ll~Fa~~kniHv 262 (471)
T KOG0256|consen 193 VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLG----------TTLSPEELISLLNFASRKNIHV 262 (471)
T ss_pred ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCC----------CccCHHHHHHHHHHHhhcceEE
Confidence 66777777766556667788888888887765432 33322122122 2356678888999999998888
Q ss_pred Ee
Q 033342 85 SL 86 (121)
Q Consensus 85 i~ 86 (121)
|.
T Consensus 263 I~ 264 (471)
T KOG0256|consen 263 IS 264 (471)
T ss_pred Ee
Confidence 64
No 392
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=37.95 E-value=93 Score=21.04 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=14.1
Q ss_pred HHHHHHCCCcEEEccCCcc
Q 033342 31 VKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.....++|||++-|+-.
T Consensus 19 ~~~l~~~~~DIi~LQE~~~ 37 (254)
T TIGR00195 19 LAWLKENQPDVLCLQETKV 37 (254)
T ss_pred HHHHHhcCCCEEEEEeccc
Confidence 3334467899999999755
No 393
>PRK06290 aspartate aminotransferase; Provisional
Probab=37.88 E-value=1.3e+02 Score=22.13 Aligned_cols=39 Identities=18% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
.++++|++---..++|.. .+.+.++.+.++|++++++|+
T Consensus 178 ~~~k~i~l~nP~NPTG~v----------~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 178 EKAKLLYLNYPNNPTGAV----------ATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred ccceEEEEECCCCCCCcC----------CCHHHHHHHHHHHHHcCeEEE
Confidence 356666654213334432 344667888889999998775
No 394
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=37.43 E-value=56 Score=21.45 Aligned_cols=39 Identities=13% Similarity=0.116 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN 111 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~ 111 (121)
+.+.+.+++++ +..+++-+.... .-..+.+..+++. +|+
T Consensus 177 l~~~l~~~~~~-~~tii~vsH~~~--~~~~~~d~i~~l~-~G~ 215 (216)
T TIGR00960 177 IMRLFEEFNRR-GTTVLVATHDIN--LVETYRHRTLTLS-RGR 215 (216)
T ss_pred HHHHHHHHHHC-CCEEEEEeCCHH--HHHHhCCEEEEEe-CCc
Confidence 34445555443 555544432220 1113446666665 564
No 395
>PRK05421 hypothetical protein; Provisional
Probab=37.43 E-value=43 Score=23.07 Aligned_cols=14 Identities=21% Similarity=0.271 Sum_probs=12.0
Q ss_pred HCCCcEEEccCCcc
Q 033342 36 SAGAKLLCFPENFS 49 (121)
Q Consensus 36 ~~~~dlvv~PE~~~ 49 (121)
..++|||+|-|...
T Consensus 67 ~~~~DiI~LQEv~~ 80 (263)
T PRK05421 67 GKDADLVLLQEAQT 80 (263)
T ss_pred ccCCCEEEEEeccc
Confidence 67899999999864
No 396
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=37.39 E-value=86 Score=18.23 Aligned_cols=47 Identities=11% Similarity=0.145 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
+-++.+.+.+++.|+.+..+..... .....-.+.++.+|+|..+..+
T Consensus 69 ~dl~~~~~~l~~~Gv~~~~~~~~~~--~~~~~~~~~~~~DPdG~~iE~~ 115 (120)
T cd07252 69 AALDALAARLRAAGVAVEEGSAELA--AERGVEGLIRFADPDGNRHELF 115 (120)
T ss_pred HHHHHHHHHHHHcCCeEEEcCHHHH--hhCCCcEEEEEECCCCCEEEEE
Confidence 4466666667778888865422110 1111225679999999877654
No 397
>PRK07337 aminotransferase; Validated
Probab=37.34 E-value=1.1e+02 Score=22.04 Aligned_cols=19 Identities=5% Similarity=-0.022 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHcCcEEE
Q 033342 67 GPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii 85 (121)
.+-++.+.++|++++++++
T Consensus 182 ~~~~~~i~~~a~~~~~~ii 200 (388)
T PRK07337 182 PDELRRIVEAVRARGGFTI 200 (388)
T ss_pred HHHHHHHHHHHHHCCCEEE
Confidence 3457778889999888775
No 398
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=37.16 E-value=69 Score=22.52 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++ +..+++-+.... .-..+.+..++++ +|+++
T Consensus 173 ~l~~~l~~~~~~-g~til~~sH~~~--~~~~~~d~i~~l~-~G~i~ 214 (303)
T TIGR01288 173 LIWERLRSLLAR-GKTILLTTHFME--EAERLCDRLCVLE-SGRKI 214 (303)
T ss_pred HHHHHHHHHHhC-CCEEEEECCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 344555555443 555555543220 1113445566665 56654
No 399
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=37.12 E-value=37 Score=21.13 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
+-+++.++.++|.+.+..++.||+...
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq 88 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQ 88 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGG
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHh
Confidence 456777777777777999999999886
No 400
>PRK14071 6-phosphofructokinase; Provisional
Probab=36.99 E-value=76 Score=23.25 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.2
Q ss_pred HCCCcEEEccCCcc
Q 033342 36 SAGAKLLCFPENFS 49 (121)
Q Consensus 36 ~~~~dlvv~PE~~~ 49 (121)
+.+||+++.||.-+
T Consensus 198 a~ga~~iliPE~~~ 211 (360)
T PRK14071 198 AGGADVILIPEIPY 211 (360)
T ss_pred hcCCCEEEECCCCC
Confidence 45899999999643
No 401
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=36.96 E-value=1.1e+02 Score=19.61 Aligned_cols=18 Identities=11% Similarity=0.073 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHcC-cEEE
Q 033342 68 PIMQGYCSLARESS-MWLS 85 (121)
Q Consensus 68 ~~~~~l~~~a~~~~-~~ii 85 (121)
.+.+.+.++|++++ +.++
T Consensus 149 ~~n~~~~~~a~~~~~v~~v 167 (204)
T cd04506 149 DWNEASQKLASQYKNAYFV 167 (204)
T ss_pred HHHHHHHHHHHhCCCeEEE
Confidence 45566677777776 6664
No 402
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=36.95 E-value=1.5e+02 Score=20.90 Aligned_cols=20 Identities=5% Similarity=-0.197 Sum_probs=13.2
Q ss_pred CChHHHHHHHHHHHcCcEEE
Q 033342 66 DGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~ii 85 (121)
..+..+.+...|+++++..+
T Consensus 132 P~ee~~~~~~~~~~~gi~~I 151 (265)
T COG0159 132 PPEESDELLKAAEKHGIDPI 151 (265)
T ss_pred ChHHHHHHHHHHHHcCCcEE
Confidence 34556677777888876553
No 403
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=36.93 E-value=90 Score=18.36 Aligned_cols=47 Identities=11% Similarity=-0.011 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
.-++.+.+..++.++.+.-|..... ...+ .....++.+|+|..+..+
T Consensus 71 ~dv~~~~~~l~~~G~~~~~~~~~~~-~~~~-~~~~~~f~DPdG~~iE~~ 117 (124)
T cd08361 71 DALESAATELEQYGHEVRRGTAEEC-ELRK-VKAFIAFRDPSGNSIELV 117 (124)
T ss_pred HHHHHHHHHHHHcCCceEEcCHHHh-hcCC-cceEEEEECcCCCEEEEE
Confidence 4466677777888887766643221 0111 123467999999776543
No 404
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=36.89 E-value=46 Score=21.95 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=32.3
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCC-hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDG-PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
|...+++++++-|-+. + +...... .+.+.+.++.++.+..+++-+... +--......+.+.++|
T Consensus 135 al~~~p~illlDEP~~--~--------LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~---~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 135 TFGSNCGILALDEPTT--N--------LDEENIEESLAEIIEERKSQKNFQLIVITHDE---ELVDAADHIYRVEKDG 199 (204)
T ss_pred HhccCCCEEEEcCCcc--c--------cCHHHHHHHHHHHHHHHHhccCCEEEEEEecH---HHHhhCCEEEEEeeCC
Confidence 3456899999999775 1 1111112 345555565554344443332222 1112345566666666
No 405
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=36.86 E-value=1e+02 Score=19.08 Aligned_cols=61 Identities=10% Similarity=-0.001 Sum_probs=32.9
Q ss_pred CHHHHHHHHHHHHHHHHH--CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 19 DLAANFATCSRLVKEAAS--AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 19 ~~~~n~~~~~~~~~~a~~--~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
+.+.-.+.+..+++.+.+ .++.+++..=.-. ..... .....-..+-+.+.++|++.++.++
T Consensus 66 ~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~-~~~~~-----~~~~~~~~~n~~l~~~a~~~~~~~i 128 (169)
T cd01828 66 SDEDIVANYRTILEKLRKHFPNIKIVVQSILPV-GELKS-----IPNEQIEELNRQLAQLAQQEGVTFL 128 (169)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCc-CccCc-----CCHHHHHHHHHHHHHHHHHCCCEEE
Confidence 345555555556655554 7888888532111 10000 0001123566778888888888775
No 406
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=36.85 E-value=1.4e+02 Score=20.69 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=28.1
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.+.+++++.+.+.++.|.+.|..+-+-+|.+.
T Consensus 105 ~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~ 136 (262)
T cd07948 105 KSITEIIESAVEVIEFVKSKGIEVRFSSEDSF 136 (262)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC
Confidence 56788899999999999999999999999875
No 407
>PRK10785 maltodextrin glucosidase; Provisional
Probab=36.82 E-value=2e+02 Score=22.68 Aligned_cols=69 Identities=13% Similarity=0.103 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEccCCcc---CCCCCCchhhhcccC-CCChHHHHHHHHHHHcCcEEEeccce
Q 033342 22 ANFATCSRLVKEAASAGAKLLCFPENFS---YVGDKDADNIKIAEP-LDGPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 22 ~n~~~~~~~~~~a~~~~~dlvv~PE~~~---~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
.+++-+.+.+...++-|++.|-+.=-+- ..||...+.....+. -..+-+..|.+.|++.||.|++=.+.
T Consensus 176 GDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~ 248 (598)
T PRK10785 176 GDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVF 248 (598)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3567777777777788999776554432 234544444333322 23466778888899999999765433
No 408
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=36.81 E-value=68 Score=22.16 Aligned_cols=66 Identities=8% Similarity=0.195 Sum_probs=31.5
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
|...+++++++-|-+. +-+. .....+.+.+.++.+ .+..+++-+.... .-..+.+..+++. +|++.
T Consensus 157 al~~~p~iLlLDEPt~--gLD~--------~~~~~l~~~L~~~~~-~g~tiIiisH~~~--~i~~~~d~i~~l~-~G~i~ 222 (264)
T PRK13546 157 NITVNPDILVIDEALS--VGDQ--------TFAQKCLDKIYEFKE-QNKTIFFVSHNLG--QVRQFCTKIAWIE-GGKLK 222 (264)
T ss_pred HHhhCCCEEEEeCccc--cCCH--------HHHHHHHHHHHHHHH-CCCEEEEEcCCHH--HHHHHcCEEEEEE-CCEEE
Confidence 3345677787777554 2111 011234555555543 4555544432221 1113445566775 67764
No 409
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=36.73 E-value=96 Score=23.42 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~ 115 (121)
...+.+.++.++ +..+++-+.... .-.++-+..+++. +|++++.
T Consensus 429 ~~~~~l~~l~~~-~~tvi~vsHd~~--~~~~~~d~v~~l~-~g~i~~~ 472 (491)
T PRK10982 429 EIYQLIAELAKK-DKGIIIISSEMP--ELLGITDRILVMS-NGLVAGI 472 (491)
T ss_pred HHHHHHHHHHHC-CCEEEEECCChH--HHHhhCCEEEEEE-CCEEEEE
Confidence 344455555544 555655543321 1123456667775 6877643
No 410
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=36.55 E-value=1.2e+02 Score=21.21 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHCCCcEEE
Q 033342 23 NFATCSRLVKEAASAGAKLLC 43 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv 43 (121)
+.+...++.+.|.+.|+|-++
T Consensus 84 ~t~~ai~~a~~a~~~Gad~v~ 104 (293)
T PRK04147 84 NTAEAQELAKYATELGYDAIS 104 (293)
T ss_pred CHHHHHHHHHHHHHcCCCEEE
Confidence 556677777888888988543
No 411
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=36.42 E-value=1.5e+02 Score=20.66 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 033342 68 PIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~ 86 (121)
+..+.+.+.++++++..+.
T Consensus 129 ee~~~~~~~~~~~gl~~I~ 147 (258)
T PRK13111 129 EEAEELRAAAKKHGLDLIF 147 (258)
T ss_pred HHHHHHHHHHHHcCCcEEE
Confidence 4556677777778766554
No 412
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=36.39 E-value=1.3e+02 Score=21.72 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=12.8
Q ss_pred HHHHHHHHHHcCcEEEe
Q 033342 70 MQGYCSLARESSMWLSL 86 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii~ 86 (121)
++.+.++|+++++.+++
T Consensus 176 ~~~i~~~~~~~~~~~iv 192 (398)
T TIGR03392 176 LARAITLAHQYGAVVVV 192 (398)
T ss_pred HHHHHHHHHHcCCEEEE
Confidence 46688888998887753
No 413
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=36.19 E-value=1.1e+02 Score=21.10 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
....++++|++.-...++|.. .+.+.+..+.++|+++++.+++
T Consensus 128 ~~~~~~~~v~i~~~~~~tG~~----------~~~~~l~~l~~~~~~~~~~~iv 170 (350)
T cd00609 128 AKTPKTKLLYLNNPNNPTGAV----------LSEEELEELAELAKKHGILIIS 170 (350)
T ss_pred hcCccceEEEEECCCCCCCcc----------cCHHHHHHHHHHHHhCCeEEEE
Confidence 334567777775543333332 1234566677899999987753
No 414
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=36.14 E-value=1e+02 Score=20.70 Aligned_cols=37 Identities=14% Similarity=0.066 Sum_probs=27.5
Q ss_pred CcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccce
Q 033342 39 AKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 39 ~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
+|.|+.=|..+ ++.+....+.++|.+.|+.+++..+.
T Consensus 83 ~~~v~IDEaQF---------------~~~~~v~~l~~lad~lgi~Vi~~GL~ 119 (201)
T COG1435 83 VDCVLIDEAQF---------------FDEELVYVLNELADRLGIPVICYGLD 119 (201)
T ss_pred cCEEEEehhHh---------------CCHHHHHHHHHHHhhcCCEEEEeccc
Confidence 67888888765 45577888899998888887665443
No 415
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=36.12 E-value=66 Score=25.26 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++++..+++-+.... .-..+.+..+++. +|+++
T Consensus 501 ~i~~ll~~l~~~~g~tvi~isHdl~--~v~~~~dri~vl~-~G~iv 543 (623)
T PRK10261 501 QIINLLLDLQRDFGIAYLFISHDMA--VVERISHRVAVMY-LGQIV 543 (623)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 4556667777776776665543220 1112344555564 57664
No 416
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=36.06 E-value=90 Score=21.63 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=32.4
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+++++++=|-+. +-+ ......+.+.+.+++++++..+++-+.... .-.++.+..+++. +|+++
T Consensus 171 ~~p~lllLDEPt~--~LD--------~~~~~~l~~~l~~~~~~~~~tviiisH~~~--~~~~~~d~i~~l~-~G~i~ 234 (272)
T PRK13547 171 QPPRYLLLDEPTA--ALD--------LAHQHRLLDTVRRLARDWNLGVLAIVHDPN--LAARHADRIAMLA-DGAIV 234 (272)
T ss_pred CCCCEEEEcCccc--cCC--------HHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHHhCCEEEEEE-CCeEE
Confidence 3677777777553 111 111234555566666665665555432220 1113456667775 67764
No 417
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=36.03 E-value=1.5e+02 Score=20.80 Aligned_cols=18 Identities=17% Similarity=0.305 Sum_probs=13.2
Q ss_pred HHHHHCCCcEEEccCCcc
Q 033342 32 KEAASAGAKLLCFPENFS 49 (121)
Q Consensus 32 ~~a~~~~~dlvv~PE~~~ 49 (121)
+...+.|+|+|.+.|-+.
T Consensus 175 ~~~~~~G~d~i~i~d~~~ 192 (330)
T cd03465 175 DALIEAGADGIYISDPWA 192 (330)
T ss_pred HHHHHhCCCEEEEeCCcc
Confidence 333456999999999765
No 418
>PLN02368 alanine transaminase
Probab=36.00 E-value=1.8e+02 Score=21.55 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHC--CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 24 FATCSRLVKEAASA--GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 24 ~~~~~~~~~~a~~~--~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
++.+++.+..+..+ +++++++.==..++|.. .+.+.++.+.++|++++++|+.
T Consensus 194 ~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v----------~s~e~l~~l~~~a~~~~~~II~ 248 (407)
T PLN02368 194 VNNLRQSVAQARSKGITVRAMVIINPGNPTGQC----------LSEANLREILKFCYQERLVLLG 248 (407)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEEECCCCCCCcc----------CCHHHHHHHHHHHHHcCCEEEE
Confidence 34455544433222 45655443224445543 3445677888888888887753
No 419
>PRK07682 hypothetical protein; Validated
Probab=35.98 E-value=1.2e+02 Score=21.82 Aligned_cols=21 Identities=0% Similarity=0.077 Sum_probs=15.9
Q ss_pred CChHHHHHHHHHHHcCcEEEe
Q 033342 66 DGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+.+.++.+.++|+++++.++.
T Consensus 172 s~~~~~~l~~~~~~~~~~ii~ 192 (378)
T PRK07682 172 NKSELEEIAVIVEKHDLIVLS 192 (378)
T ss_pred CHHHHHHHHHHHHHcCcEEEE
Confidence 335678888999999987753
No 420
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=35.91 E-value=1.1e+02 Score=19.05 Aligned_cols=75 Identities=5% Similarity=-0.042 Sum_probs=36.1
Q ss_pred EEEEEEeccc-----cCHHHHHHHHHHHHHHHHH--CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHc
Q 033342 8 RVAVAQMTSI-----NDLAANFATCSRLVKEAAS--AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARES 80 (121)
Q Consensus 8 ~ia~vQ~~~~-----~~~~~n~~~~~~~~~~a~~--~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~ 80 (121)
++.+++.-.- .+.++-.+.+.++++.+.+ .++.+++..-.-. ...... .......-..+-+.++++|+++
T Consensus 53 d~v~i~~G~ND~~~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~-~~~~~~--~~~~~~~~~~~n~~l~~~a~~~ 129 (174)
T cd01841 53 SKVFLFLGTNDIGKEVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPV-LEEDEI--KTRSNTRIQRLNDAIKELAPEL 129 (174)
T ss_pred CEEEEEeccccCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCc-Cccccc--ccCCHHHHHHHHHHHHHHHHHC
Confidence 4556665331 2344444555555554443 3567776532211 111000 0011112345677888999999
Q ss_pred CcEEE
Q 033342 81 SMWLS 85 (121)
Q Consensus 81 ~~~ii 85 (121)
++.++
T Consensus 130 ~~~~i 134 (174)
T cd01841 130 GVTFI 134 (174)
T ss_pred CCEEE
Confidence 87663
No 421
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=35.88 E-value=1.6e+02 Score=20.90 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHCCCc-EEEccCCc
Q 033342 22 ANFATCSRLVKEAASAGAK-LLCFPENF 48 (121)
Q Consensus 22 ~n~~~~~~~~~~a~~~~~d-lvv~PE~~ 48 (121)
.|.+...++.+.|.+-|+| +++.|=+.
T Consensus 83 ~~t~eai~lak~a~~~Gad~il~v~PyY 110 (299)
T COG0329 83 NSTAEAIELAKHAEKLGADGILVVPPYY 110 (299)
T ss_pred CcHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 3567777888888888988 34444333
No 422
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=35.86 E-value=1.4e+02 Score=20.20 Aligned_cols=31 Identities=13% Similarity=0.120 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 19 DLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 19 ~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
+.+..++.+.+.++.+++.|-++.+..|.+.
T Consensus 109 ~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~ 139 (265)
T cd03174 109 SREEDLENAEEAIEAAKEAGLEVEGSLEDAF 139 (265)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEEEeec
Confidence 3456789999999999999999999998776
No 423
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=35.84 E-value=84 Score=22.38 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=26.6
Q ss_pred cCHHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 18 NDLAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 18 ~~~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
...+..++++.+.+.+|.++|+.++|+..-..
T Consensus 135 ~~L~~aL~~l~~ea~~Av~~G~~ilILsDr~~ 166 (287)
T PF04898_consen 135 EGLEEALDRLCEEAEAAVREGANILILSDRNA 166 (287)
T ss_dssp TCHHHHHHHHHHHHHHHHHCT-SEEEEESTC-
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEEECCCCC
Confidence 56888999999999999999999999977654
No 424
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=35.81 E-value=53 Score=17.05 Aligned_cols=16 Identities=6% Similarity=0.142 Sum_probs=10.3
Q ss_pred EEEECCCCCEEeeeec
Q 033342 103 HVLLDDAGNIRSTYRK 118 (121)
Q Consensus 103 ~~~i~~~G~i~~~y~K 118 (121)
...++|||++++.+++
T Consensus 29 ~aa~~pdG~lvAL~~~ 44 (56)
T PF09142_consen 29 VAAFAPDGRLVALLEE 44 (56)
T ss_dssp EEEE-TTS-EEEEEEE
T ss_pred EEEECCCCcEEEEEEc
Confidence 4578899998887654
No 425
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=35.79 E-value=68 Score=20.94 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEEC
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLD 107 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~ 107 (121)
.+.+.+.+++++ +..+++-+.... .-..+.+..+++.
T Consensus 172 ~~~~~l~~~~~~-~~tvi~~sH~~~--~~~~~~d~i~~l~ 208 (211)
T cd03225 172 ELLELLKKLKAE-GKTIIIVTHDLD--LLLELADRVIVLE 208 (211)
T ss_pred HHHHHHHHHHHc-CCEEEEEeCCHH--HHHHhCCEEEEEe
Confidence 344555565554 555555533221 1112345555554
No 426
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.75 E-value=1.2e+02 Score=19.57 Aligned_cols=69 Identities=17% Similarity=0.061 Sum_probs=34.8
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i 112 (121)
+|...+++++++=|-+. +.+.. ......+.+.+++++ +..+++-+.... ..-....+..+++..+|++
T Consensus 121 ~al~~~p~vlllDEP~~--~LD~~--------~~~~l~~~l~~~~~~-~~tiiivtH~~~-~~~~~~~d~i~~l~~~g~i 188 (192)
T cd03232 121 VELAAKPSILFLDEPTS--GLDSQ--------AAYNIVRFLKKLADS-GQAILCTIHQPS-ASIFEKFDRLLLLKRGGKT 188 (192)
T ss_pred HHHhcCCcEEEEeCCCc--CCCHH--------HHHHHHHHHHHHHHc-CCEEEEEEcCCh-HHHHhhCCEEEEEcCCCeE
Confidence 34456889999988665 22111 122344555665543 555554432210 0002344666777633776
Q ss_pred E
Q 033342 113 R 113 (121)
Q Consensus 113 ~ 113 (121)
+
T Consensus 189 ~ 189 (192)
T cd03232 189 V 189 (192)
T ss_pred E
Confidence 4
No 427
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=35.75 E-value=1e+02 Score=18.74 Aligned_cols=19 Identities=16% Similarity=0.064 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 033342 68 PIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~ 86 (121)
+....+..+|++++++++.
T Consensus 60 ~i~~~~~~lc~~~~Vp~~~ 78 (122)
T PRK04175 60 EIVAHLPLLCEEKKIPYVY 78 (122)
T ss_pred HHHHHHHHHHHHcCCCEEE
Confidence 3467899999999987743
No 428
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=35.69 E-value=1.1e+02 Score=20.41 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=13.4
Q ss_pred HHHHHHHCCCcEEEccCCc
Q 033342 30 LVKEAASAGAKLLCFPENF 48 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE~~ 48 (121)
.++.|.+.|+|+++.|-.-
T Consensus 75 ~~~~a~~aGA~fivsp~~~ 93 (206)
T PRK09140 75 QVDRLADAGGRLIVTPNTD 93 (206)
T ss_pred HHHHHHHcCCCEEECCCCC
Confidence 4455667788888887543
No 429
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.54 E-value=68 Score=22.89 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.++.++ +..|++-+.... .--.+.+..++++ +|+++
T Consensus 215 l~~~L~~l~~~-g~TiiivtHd~~--~~~~~adri~vl~-~G~i~ 255 (320)
T PRK13631 215 MMQLILDAKAN-NKTVFVITHTME--HVLEVADEVIVMD-KGKIL 255 (320)
T ss_pred HHHHHHHHHHC-CCEEEEEecCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34444555433 555554432210 1113446667775 67764
No 430
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=35.53 E-value=1e+02 Score=19.92 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=14.5
Q ss_pred ChHHHHHHHHHHHcCcEEE
Q 033342 67 GPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 67 ~~~~~~l~~~a~~~~~~ii 85 (121)
..+.+.++++|+++++.++
T Consensus 155 ~~~~~~~~~~a~~~~~~~i 173 (208)
T cd01839 155 KGLADAYRALAEELGCHFF 173 (208)
T ss_pred HHHHHHHHHHHHHhCCCEE
Confidence 4566778899999987663
No 431
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=35.51 E-value=1.9e+02 Score=21.78 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=31.6
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCc-eEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDAR-LCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~-~~Ns~~~i~~~G~i~ 113 (121)
..+++++++=|=+. |-+. .......+.+.+++++.+..+++-+.... .-.. +.+..+++. +|+++
T Consensus 417 ~~~p~lllLDEPt~--gLD~--------~~~~~l~~~L~~l~~~~~~tviivsHd~~--~~~~~~~d~v~~l~-~G~i~ 482 (490)
T PRK10938 417 VKHPTLLILDEPLQ--GLDP--------LNRQLVRRFVDVLISEGETQLLFVSHHAE--DAPACITHRLEFVP-DGDIY 482 (490)
T ss_pred hcCCCEEEEcCccc--cCCH--------HHHHHHHHHHHHHHhcCCcEEEEEecchh--hhhhhhheeEEEec-CCceE
Confidence 34667777777443 2111 01224455566666654453444332221 1122 346677775 78763
No 432
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=35.50 E-value=1.5e+02 Score=20.43 Aligned_cols=67 Identities=13% Similarity=0.288 Sum_probs=35.6
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
|...++.++++-|=|. |-++ ..-.-.+.+-...+..|+-|++.-...+ +-=.+.+.++++. +|+++
T Consensus 153 aLa~~P~fiLLDEPFA--GVDP---------iaV~dIq~iI~~L~~rgiGvLITDHNVR--EtL~i~dRaYIi~-~G~vl 218 (243)
T COG1137 153 ALAANPKFILLDEPFA--GVDP---------IAVIDIQRIIKHLKDRGIGVLITDHNVR--ETLDICDRAYIIS-DGKVL 218 (243)
T ss_pred HHhcCCCEEEecCCcc--CCCc---------hhHHHHHHHHHHHHhCCceEEEccccHH--HHHhhhheEEEEe-cCeEE
Confidence 3445788888888664 3221 1111122333333455776665532221 2224678888886 78876
Q ss_pred e
Q 033342 114 S 114 (121)
Q Consensus 114 ~ 114 (121)
.
T Consensus 219 a 219 (243)
T COG1137 219 A 219 (243)
T ss_pred e
Confidence 4
No 433
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=35.50 E-value=43 Score=20.09 Aligned_cols=16 Identities=31% Similarity=0.628 Sum_probs=13.2
Q ss_pred EEEEECCCCCEEeeee
Q 033342 102 THVLLDDAGNIRSTYR 117 (121)
Q Consensus 102 s~~~i~~~G~i~~~y~ 117 (121)
+.++++++|+++..|.
T Consensus 112 ~~~lid~~G~v~~~~~ 127 (140)
T cd03017 112 STFLIDPDGKIVKVWR 127 (140)
T ss_pred eEEEECCCCEEEEEEe
Confidence 6799999999987764
No 434
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=35.49 E-value=87 Score=23.77 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y 116 (121)
.+.+.+.+++++ +..+++-+.... .-..+-+..+++. +|++....
T Consensus 447 ~l~~~l~~l~~~-g~tvi~vsHd~~--~~~~~~d~i~~l~-~G~i~~~~ 491 (510)
T PRK09700 447 EIYKVMRQLADD-GKVILMVSSELP--EIITVCDRIAVFC-EGRLTQIL 491 (510)
T ss_pred HHHHHHHHHHHC-CCEEEEEcCCHH--HHHhhCCEEEEEE-CCEEEEEe
Confidence 344555555543 655655543321 1123445667775 68776544
No 435
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=35.47 E-value=90 Score=24.02 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=10.8
Q ss_pred HHCCCcEEEccCCcc
Q 033342 35 ASAGAKLLCFPENFS 49 (121)
Q Consensus 35 ~~~~~dlvv~PE~~~ 49 (121)
.+.| ++|+|||..-
T Consensus 363 L~~g-~lvIFPEGTr 376 (497)
T PLN02177 363 LEEG-DLVICPEGTT 376 (497)
T ss_pred HhcC-CEEECcCcCC
Confidence 3445 8999999975
No 436
>COG3089 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.40 E-value=64 Score=17.62 Aligned_cols=29 Identities=10% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 21 AANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 21 ~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
+..++.-...++.+...|--+|||.|..-
T Consensus 32 E~sL~qkv~~~r~qlq~GeaVivwselhe 60 (72)
T COG3089 32 ERSLEQKVADVRRQLQSGEAVIVWSELHE 60 (72)
T ss_pred cccHHHHHHHHHHHHhcCceEEEecchhh
Confidence 33444444555556678889999998764
No 437
>PRK06207 aspartate aminotransferase; Provisional
Probab=35.38 E-value=1.7e+02 Score=21.40 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=16.2
Q ss_pred CChHHHHHHHHHHHcCcEEEe
Q 033342 66 DGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~ii~ 86 (121)
+.+.++.+.++|++++++|+.
T Consensus 196 s~e~l~~l~~~a~~~~~~iI~ 216 (405)
T PRK06207 196 SAEEIAQIAALARRYGATVIV 216 (405)
T ss_pred CHHHHHHHHHHHHHcCCEEEE
Confidence 445678889999999988764
No 438
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=35.11 E-value=1.1e+02 Score=18.73 Aligned_cols=44 Identities=9% Similarity=-0.071 Sum_probs=27.0
Q ss_pred HHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeee
Q 033342 70 MQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYR 117 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~ 117 (121)
++.+.+.+.+.|+.++.. .... .+ .....+++.+|+|.++..+.
T Consensus 97 ld~~~~~l~~~G~~~~~~-~~~~--~~-~~~~~~~~~DPdG~~iel~~ 140 (150)
T TIGR00068 97 VYKACERVRALGGNVVRE-PGPV--KG-GTTVIAFVEDPDGYKIELIQ 140 (150)
T ss_pred HHHHHHHHHHcCCccccC-Cccc--CC-CceEEEEEECCCCCEEEEEE
Confidence 556666677788877533 2111 22 23456788999998876543
No 439
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=35.10 E-value=92 Score=21.58 Aligned_cols=43 Identities=14% Similarity=0.044 Sum_probs=27.4
Q ss_pred CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccce
Q 033342 38 GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQ 90 (121)
Q Consensus 38 ~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~ 90 (121)
+-++|-+.|.-+ +.....+.+.+..-.++|+++++++++=+..
T Consensus 94 ~e~VvAiGEiGL----------e~~t~~E~evf~~QL~LA~e~dvPviVHTPr 136 (254)
T COG1099 94 NEDVVAIGEIGL----------EEATDEEKEVFREQLELARELDVPVIVHTPR 136 (254)
T ss_pred cCCeeEeeeccc----------ccCCHHHHHHHHHHHHHHHHcCCcEEEeCCC
Confidence 456777777554 2222224456666678999999999877533
No 440
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=35.09 E-value=1.4e+02 Score=21.87 Aligned_cols=22 Identities=9% Similarity=0.036 Sum_probs=15.8
Q ss_pred CChHHHHHHHHHHHcCcEEEec
Q 033342 66 DGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 66 ~~~~~~~l~~~a~~~~~~ii~G 87 (121)
+.+.++.+.++|+++++.|+.=
T Consensus 188 s~~~~~~l~~~a~~~~~~ii~D 209 (409)
T PLN00143 188 SYEHLNKIAETARKLGILVIAD 209 (409)
T ss_pred CHHHHHHHHHHHHHcCCeEEEE
Confidence 3455777888888888877643
No 441
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=35.06 E-value=85 Score=17.49 Aligned_cols=43 Identities=9% Similarity=0.020 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~ 115 (121)
+-++.+.+-+++.++.++.+. ... ..| .-++++.+|+|..+..
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~-~~~--~~g--~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEP-RDD--PWG--QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEE-EEE--TTS--EEEEEEE-TTS-EEEE
T ss_pred cCHHHHHHHHHHCCCeEeeCC-EEc--CCC--eEEEEEECCCCCEEEe
Confidence 345566666777788886652 221 222 3688999999987654
No 442
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=35.01 E-value=69 Score=20.30 Aligned_cols=66 Identities=12% Similarity=0.076 Sum_probs=33.4
Q ss_pred HHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCC
Q 033342 31 VKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAG 110 (121)
Q Consensus 31 ~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G 110 (121)
+.+|...+++++++=|-+. +-+. .......+.+.++.++ +..+++-+.... .- ...+..++++ +|
T Consensus 107 la~al~~~p~~lllDEPt~--~LD~--------~~~~~l~~~l~~~~~~-~~tii~~sh~~~--~~-~~~d~v~~l~-~G 171 (173)
T cd03246 107 LARALYGNPRILVLDEPNS--HLDV--------EGERALNQAIAALKAA-GATRIVIAHRPE--TL-ASADRILVLE-DG 171 (173)
T ss_pred HHHHHhcCCCEEEEECCcc--ccCH--------HHHHHHHHHHHHHHhC-CCEEEEEeCCHH--HH-HhCCEEEEEE-CC
Confidence 4445567899999988664 2111 1122344555565543 555554433221 11 2345556665 55
Q ss_pred C
Q 033342 111 N 111 (121)
Q Consensus 111 ~ 111 (121)
+
T Consensus 172 ~ 172 (173)
T cd03246 172 R 172 (173)
T ss_pred C
Confidence 4
No 443
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=34.99 E-value=1.2e+02 Score=19.14 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHcCcEEE
Q 033342 68 PIMQGYCSLARESSMWLS 85 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii 85 (121)
.+.+.+.++|+++++.++
T Consensus 143 ~~~~~~~~~a~~~~~~~i 160 (199)
T cd01838 143 QYAEACVEVAEELGVPVI 160 (199)
T ss_pred HHHHHHHHHHHHhCCcEE
Confidence 455677889999987764
No 444
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=34.86 E-value=1.4e+02 Score=20.02 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecccee
Q 033342 28 SRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQE 91 (121)
Q Consensus 28 ~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~ 91 (121)
..+++++...++++||+=....+.+....+. ..-..+.+.+..+++++++.+++-+...
T Consensus 101 ~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~-----~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 101 ERIIEQLLIRRIDLVVIDPLVSFHGVSENDN-----GAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHHHHHHHhcCCCEEEECChHHhCCCCcCCH-----HHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 3334434456889988885443111100000 0112456778888888888886664433
No 445
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=34.82 E-value=1.1e+02 Score=20.23 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.+++++ +..+++-+.... .-..+-+..+++. +|++.
T Consensus 163 l~~~L~~~~~~-~~tiii~sH~~~--~~~~~~d~i~~l~-~g~i~ 203 (223)
T TIGR03740 163 LRELIRSFPEQ-GITVILSSHILS--EVQQLADHIGIIS-EGVLG 203 (223)
T ss_pred HHHHHHHHHHC-CCEEEEEcCCHH--HHHHhcCEEEEEe-CCEEE
Confidence 34445555433 555544433221 1123445666665 57654
No 446
>PLN02591 tryptophan synthase
Probab=34.81 E-value=1.6e+02 Score=20.48 Aligned_cols=18 Identities=11% Similarity=0.003 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHcCcEEE
Q 033342 68 PIMQGYCSLARESSMWLS 85 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii 85 (121)
+..+.+.+.++++++..+
T Consensus 118 ee~~~~~~~~~~~gl~~I 135 (250)
T PLN02591 118 EETEALRAEAAKNGIELV 135 (250)
T ss_pred HHHHHHHHHHHHcCCeEE
Confidence 556677777888876554
No 447
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=34.81 E-value=44 Score=23.24 Aligned_cols=64 Identities=17% Similarity=0.309 Sum_probs=40.7
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.-.+|++++=|.-. .|.. . +-....+.+.++.++..+.++++.-.. .=.++-|+++++. .|++.
T Consensus 163 ~~~pdILllDEvla-vGD~-----~----F~~K~~~rl~e~~~~~~tiv~VSHd~~---~I~~~Cd~~i~l~-~G~i~ 226 (249)
T COG1134 163 HVEPDILLLDEVLA-VGDA-----A----FQEKCLERLNELVEKNKTIVLVSHDLG---AIKQYCDRAIWLE-HGQIR 226 (249)
T ss_pred hcCCCEEEEehhhh-cCCH-----H----HHHHHHHHHHHHHHcCCEEEEEECCHH---HHHHhcCeeEEEe-CCEEE
Confidence 34688888888654 3322 1 233567788888777777666663221 1125789999997 78764
No 448
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=34.81 E-value=1.1e+02 Score=20.47 Aligned_cols=13 Identities=23% Similarity=0.128 Sum_probs=7.7
Q ss_pred EEEEEEECCCCCEE
Q 033342 100 CNTHVLLDDAGNIR 113 (121)
Q Consensus 100 ~Ns~~~i~~~G~i~ 113 (121)
.+..++++ +|++.
T Consensus 213 ~d~i~~l~-~g~i~ 225 (248)
T PRK09580 213 PDYVHVLY-QGRIV 225 (248)
T ss_pred CCEEEEEE-CCeEE
Confidence 35556665 67664
No 449
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=34.78 E-value=87 Score=20.98 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=8.2
Q ss_pred eEEEEEEECCCCCEE
Q 033342 99 LCNTHVLLDDAGNIR 113 (121)
Q Consensus 99 ~~Ns~~~i~~~G~i~ 113 (121)
+.+..+++. +|+++
T Consensus 207 ~~d~i~~l~-~g~i~ 220 (242)
T PRK11124 207 TASRVVYME-NGHIV 220 (242)
T ss_pred hcCEEEEEE-CCEEE
Confidence 345566665 57654
No 450
>PLN02564 6-phosphofructokinase
Probab=34.78 E-value=1.3e+02 Score=23.16 Aligned_cols=12 Identities=17% Similarity=0.077 Sum_probs=10.4
Q ss_pred CCcEEEccCCcc
Q 033342 38 GAKLLCFPENFS 49 (121)
Q Consensus 38 ~~dlvv~PE~~~ 49 (121)
+||+++.||...
T Consensus 276 gad~iLIPE~pf 287 (484)
T PLN02564 276 DVDCCLIPESPF 287 (484)
T ss_pred CCCEEEeCCCCC
Confidence 799999999765
No 451
>PRK08637 hypothetical protein; Provisional
Probab=34.72 E-value=1.8e+02 Score=21.12 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHH-----cCcEEE
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARE-----SSMWLS 85 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~-----~~~~ii 85 (121)
+++.+++.++.+......+++.|=-..++|... +.+.++.+.++|++ ++++|+
T Consensus 131 d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~----------s~~~~~~l~~~~~~~~~~~~~~~iI 188 (388)
T PRK08637 131 DTDALKEALQAAYNKGKVIVILNFPNNPTGYTP----------TEKEATAIVEAIKELADAGTKVVAV 188 (388)
T ss_pred CHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC----------CHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 345555554433334556777776566566532 33445555555543 666665
No 452
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=34.67 E-value=91 Score=17.72 Aligned_cols=43 Identities=9% Similarity=0.092 Sum_probs=26.7
Q ss_pred HHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 70 MQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
++.+.+.+++.++.++.+..... ......-+.++.+|+|..+.
T Consensus 79 ~~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~~~~~DPdG~~ve 121 (125)
T cd07253 79 IDELVAHLEAHGVPIEEGPVPRT--GARGPITSVYFRDPDGNLIE 121 (125)
T ss_pred HHHHHHHHHHCCceeecCccccc--CCCCCccEEEEECCCCCEEE
Confidence 66677777778887765532221 11112356789999997754
No 453
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.60 E-value=87 Score=20.43 Aligned_cols=41 Identities=24% Similarity=0.268 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.+++++ +..+++-+.... .-..+-+..++++ +|++.
T Consensus 167 ~~~~l~~~~~~-~~tii~~sH~~~--~~~~~~d~i~~l~-~g~i~ 207 (210)
T cd03269 167 LKDVIRELARA-GKTVILSTHQME--LVEELCDRVLLLN-KGRAV 207 (210)
T ss_pred HHHHHHHHHHC-CCEEEEECCCHH--HHHHhhhEEEEEe-CCEEE
Confidence 34445555443 455544433321 1123456667775 67764
No 454
>PLN02783 diacylglycerol O-acyltransferase
Probab=34.28 E-value=80 Score=22.64 Aligned_cols=48 Identities=17% Similarity=0.093 Sum_probs=26.2
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEE
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLS 85 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii 85 (121)
..++|..+++|||..--....... .+........-+..+|.+.|+.|+
T Consensus 166 ~Lk~G~sv~IfPeGtre~~~~~~~----~~~~~~~~k~G~~~lA~~~g~PIV 213 (315)
T PLN02783 166 LLKAGYSCIIVPGGVQECLYMEHG----SEVAYLKSRKGFVKIAMETGAPLV 213 (315)
T ss_pred HHhCCCEEEEEcCCchhhcccCCC----ccccccCCCCcHHHHHHHcCCCEE
Confidence 445789999999996411110000 000011224456778888888774
No 455
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=34.19 E-value=67 Score=24.33 Aligned_cols=46 Identities=11% Similarity=0.190 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEeeee
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRSTYR 117 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~y~ 117 (121)
...+.+.++++ .+..+++-+.... .-..+.+..++++ +|+++..++
T Consensus 178 ~l~~~l~~~~~-~g~tiiiitHd~~--~~~~~~d~i~~l~-~G~i~~~~~ 223 (501)
T PRK11288 178 QLFRVIRELRA-EGRVILYVSHRME--EIFALCDAITVFK-DGRYVATFD 223 (501)
T ss_pred HHHHHHHHHHh-CCCEEEEEeCCHH--HHHHhCCEEEEEE-CCEEEeecC
Confidence 34444555543 3555555433220 1113445666775 677765543
No 456
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=34.14 E-value=1.7e+02 Score=21.29 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHHcCcEEEe
Q 033342 68 PIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~ 86 (121)
+.++.+.++|++++++++.
T Consensus 189 ~~~~~i~~~a~~~~~~ii~ 207 (403)
T TIGR01265 189 DHLQKIAEVARKLGIPIIA 207 (403)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 4467788888888877754
No 457
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=34.06 E-value=42 Score=19.32 Aligned_cols=13 Identities=54% Similarity=0.652 Sum_probs=10.1
Q ss_pred EEEEEECCCCCEE
Q 033342 101 NTHVLLDDAGNIR 113 (121)
Q Consensus 101 Ns~~~i~~~G~i~ 113 (121)
=+.++|+++|+++
T Consensus 97 P~~~vid~~G~v~ 109 (114)
T cd02967 97 PYAVLLDEAGVIA 109 (114)
T ss_pred CeEEEECCCCeEE
Confidence 3458999999874
No 458
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=34.01 E-value=1.5e+02 Score=22.21 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 23 NFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
++++++++++ +.+++||++.....+..+ + .+.++++|.+.+..+++
T Consensus 157 D~d~l~~~a~---~~kPklIi~G~S~y~~~~--------------d-~~~~reIad~vga~l~~ 202 (399)
T PF00464_consen 157 DYDELEKLAK---EHKPKLIICGASSYPRPI--------------D-FKRFREIADEVGAYLMA 202 (399)
T ss_dssp -HHHHHHHHH---HH--SEEEEE-SSTSS------------------HHHHHHHHHHTT-EEEE
T ss_pred CHHHHHHHHh---hcCCCEEEECchhccCcc--------------C-HHHHHHHHHhcCcEEEe
Confidence 4555555554 568999999987752111 1 35678888887766543
No 459
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.94 E-value=73 Score=20.80 Aligned_cols=14 Identities=36% Similarity=0.790 Sum_probs=9.1
Q ss_pred eEEEEEEECCCCCEE
Q 033342 99 LCNTHVLLDDAGNIR 113 (121)
Q Consensus 99 ~~Ns~~~i~~~G~i~ 113 (121)
+-+..++++ +|+++
T Consensus 195 ~~d~i~~l~-~g~i~ 208 (211)
T cd03264 195 LCNQVAVLN-KGKLV 208 (211)
T ss_pred hCCEEEEEE-CCEEE
Confidence 446667776 68764
No 460
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=33.94 E-value=1.2e+02 Score=20.40 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=10.1
Q ss_pred HHHHHHHCCCcEEEccC
Q 033342 30 LVKEAASAGAKLLCFPE 46 (121)
Q Consensus 30 ~~~~a~~~~~dlvv~PE 46 (121)
..+.|.+.|+|+++-|=
T Consensus 79 ~a~~a~~aGA~FivsP~ 95 (212)
T PRK05718 79 QLAQAIEAGAQFIVSPG 95 (212)
T ss_pred HHHHHHHcCCCEEECCC
Confidence 34445566777776663
No 461
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=33.90 E-value=57 Score=25.10 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=39.3
Q ss_pred HCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342 36 SAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 36 ~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~ 115 (121)
-.++++++|=|=.. -+.+..-+++.+.++.++++-+..|++. .+. .+--.+-.++.++. .|+++++
T Consensus 156 yr~a~iLILDEPTa----------VLTP~E~~~lf~~l~~l~~~G~tIi~IT--HKL-~Ev~~iaDrvTVLR-~Gkvvgt 221 (501)
T COG3845 156 YRGARLLILDEPTA----------VLTPQEADELFEILRRLAAEGKTIIFIT--HKL-KEVMAIADRVTVLR-RGKVVGT 221 (501)
T ss_pred hcCCCEEEEcCCcc----------cCCHHHHHHHHHHHHHHHHCCCEEEEEe--ccH-HHHHHhhCeeEEEe-CCeEEee
Confidence 45889999988553 1111123456667777666644444333 221 02224566777774 7888888
Q ss_pred ee
Q 033342 116 YR 117 (121)
Q Consensus 116 y~ 117 (121)
++
T Consensus 222 ~~ 223 (501)
T COG3845 222 VD 223 (501)
T ss_pred ec
Confidence 87
No 462
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=33.84 E-value=1.8e+02 Score=21.13 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCc----cCCC-----CC------Cch---hhhcccCCCChHHHHHHHHHHHcC
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENF----SYVG-----DK------DAD---NIKIAEPLDGPIMQGYCSLARESS 81 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~----~~~~-----~~------~~~---~~~~~~~~~~~~~~~l~~~a~~~~ 81 (121)
-..+++...++++.|++.|||-|=|.=.. .... |. ... +....+ .+.+....|.+.|++.|
T Consensus 11 H~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~e~~~~L~~~~~~~G 89 (329)
T TIGR03569 11 HNGSLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLE-LSEEDHRELKEYCESKG 89 (329)
T ss_pred ccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhC-CCHHHHHHHHHHHHHhC
Confidence 34567889999999999999987665321 1000 10 001 111111 56678889999999999
Q ss_pred cEEEeccc
Q 033342 82 MWLSLGGF 89 (121)
Q Consensus 82 ~~ii~G~~ 89 (121)
+.++..-+
T Consensus 90 i~~~stpf 97 (329)
T TIGR03569 90 IEFLSTPF 97 (329)
T ss_pred CcEEEEeC
Confidence 98865533
No 463
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.77 E-value=1.3e+02 Score=19.11 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHc-CcEEE
Q 033342 68 PIMQGYCSLARES-SMWLS 85 (121)
Q Consensus 68 ~~~~~l~~~a~~~-~~~ii 85 (121)
.+-+.+.++|.++ ++.++
T Consensus 137 ~~n~~~~~~a~~~~~~~~i 155 (191)
T cd01836 137 LLNRALERLASEAPRVTLL 155 (191)
T ss_pred HHHHHHHHHHhcCCCeEEE
Confidence 4556677788887 66653
No 464
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=33.76 E-value=1.3e+02 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=18.9
Q ss_pred CCChHHHHHHHHHHHcCcEEEec
Q 033342 65 LDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 65 ~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
.+.+.++.+.++|++++++|+.=
T Consensus 180 ~~~~~l~~i~~~a~~~~i~ii~D 202 (393)
T COG0436 180 YSKEELKAIVELAREHDIIIISD 202 (393)
T ss_pred CCHHHHHHHHHHHHHcCeEEEEe
Confidence 35678899999999999988654
No 465
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=33.75 E-value=1.1e+02 Score=20.37 Aligned_cols=13 Identities=23% Similarity=0.094 Sum_probs=7.8
Q ss_pred EEEEEEECCCCCEE
Q 033342 100 CNTHVLLDDAGNIR 113 (121)
Q Consensus 100 ~Ns~~~i~~~G~i~ 113 (121)
.+..+++. +|++.
T Consensus 212 ~d~i~~l~-~G~i~ 224 (243)
T TIGR01978 212 PDYVHVLL-DGRIV 224 (243)
T ss_pred CCeEEEEe-CCEEE
Confidence 35566665 67664
No 466
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=33.71 E-value=1.5e+02 Score=19.78 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHH-HCCCcEEEccCCccCCCCC-CchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 24 FATCSRLVKEAA-SAGAKLLCFPENFSYVGDK-DADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 24 ~~~~~~~~~~a~-~~~~dlvv~PE~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
++.+.+.++.+. ..++++||+==........ ..+. .. .-..+...|..+|+++++++++-+
T Consensus 108 ~~~l~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~---~~-~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 108 VSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNR---QQ-EVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCchhcCCCCCCCCH---HH-HHHHHHHHHHHHHHHhCCeEEEec
Confidence 444555555443 4488988876443311110 0000 00 113467889999999999997765
No 467
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=33.67 E-value=45 Score=21.01 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.2
Q ss_pred EEEEEEECCCCCEEee
Q 033342 100 CNTHVLLDDAGNIRST 115 (121)
Q Consensus 100 ~Ns~~~i~~~G~i~~~ 115 (121)
.=++++|+++|+++..
T Consensus 113 iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 113 LPTVVVLKPDGDVLAA 128 (146)
T ss_pred CCEEEEECCCCcEEee
Confidence 4467899999998653
No 468
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=33.57 E-value=2.2e+02 Score=22.62 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCC
Q 033342 65 LDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGN 111 (121)
Q Consensus 65 ~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~ 111 (121)
.+....+.+.+..++.+..+++-+... .--+..+..++++.+|.
T Consensus 613 LD~~~~~~l~~~l~~~~~tvI~isH~~---~~~~~~d~il~l~~~g~ 656 (659)
T TIGR00954 613 VSVDVEGYMYRLCREFGITLFSVSHRK---SLWKYHEYLLYMDGRGG 656 (659)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeCch---HHHHhCCEEEEEeCCCC
Confidence 344566667777777676665553332 11245566777776664
No 469
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=33.55 E-value=81 Score=21.78 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.++++ .+..|++-+.... .-..+.+..++++ +|+++
T Consensus 184 l~~~l~~~~~-~~~tiiivsH~~~--~~~~~~d~i~~l~-~G~i~ 224 (280)
T PRK13649 184 LMTLFKKLHQ-SGMTIVLVTHLMD--DVANYADFVYVLE-KGKLV 224 (280)
T ss_pred HHHHHHHHHH-CCCEEEEEeccHH--HHHHhCCEEEEEE-CCEEE
Confidence 3344444443 3555555532220 1123456666775 67664
No 470
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=33.40 E-value=1.6e+02 Score=20.81 Aligned_cols=25 Identities=28% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHCCCcE-EEccC
Q 033342 22 ANFATCSRLVKEAASAGAKL-LCFPE 46 (121)
Q Consensus 22 ~n~~~~~~~~~~a~~~~~dl-vv~PE 46 (121)
.+.+...++.+.|.+.|+|- ++.|-
T Consensus 79 ~~t~~ai~~a~~A~~~Gad~v~v~pP 104 (294)
T TIGR02313 79 LNHDETLELTKFAEEAGADAAMVIVP 104 (294)
T ss_pred chHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 35566777788888889884 44443
No 471
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=33.34 E-value=1.3e+02 Score=20.53 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=28.8
Q ss_pred HHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 27 CSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 27 ~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
-.+.+++|.+.++|+|+.=+-.++ .... .+. ..+........+.++++.+..-.
T Consensus 42 t~~vi~~A~~~~~dlIItHHP~~f-~~~~----~~~---~~~~~~~~~~~li~~~I~vy~~H 95 (241)
T PF01784_consen 42 TPEVIEEAIEKGADLIITHHPLFF-KPLK----SLT---GDDYKGKIIEKLIKNGISVYSAH 95 (241)
T ss_dssp SHHHHHHHHHTT-SEEEESS-SSS-STSS----HCH---CHSHHHHHHHHHHHTT-EEEEES
T ss_pred CHHHHHHHHHcCCCEEEEcCchhh-cCCc----ccc---ccchhhHHHHHHHHCCCEEEEec
Confidence 346678888899999999887652 1111 111 11233444444555788775443
No 472
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=33.33 E-value=1.3e+02 Score=21.04 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHCCCcEEEc
Q 033342 23 NFATCSRLVKEAASAGAKLLCF 44 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~ 44 (121)
+.+...++.+.|.+.|+|-+++
T Consensus 79 ~t~~~i~~a~~a~~~Gad~v~~ 100 (289)
T cd00951 79 GTATAIAYAQAAEKAGADGILL 100 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE
Confidence 4556677888888889997555
No 473
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=33.20 E-value=1.2e+02 Score=22.94 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~ 115 (121)
..+.+.+++++ +..+++-+.... .-..+.+..+++. +|+++..
T Consensus 442 l~~~l~~l~~~-g~tviivsHd~~--~~~~~~d~v~~l~-~G~i~~~ 484 (500)
T TIGR02633 442 IYKLINQLAQE-GVAIIVVSSELA--EVLGLSDRVLVIG-EGKLKGD 484 (500)
T ss_pred HHHHHHHHHhC-CCEEEEECCCHH--HHHHhCCEEEEEE-CCEEEEE
Confidence 34455566554 555555543321 1123446666775 6877643
No 474
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=33.13 E-value=51 Score=19.96 Aligned_cols=17 Identities=12% Similarity=0.290 Sum_probs=13.6
Q ss_pred EEEEEEECCCCCEEeee
Q 033342 100 CNTHVLLDDAGNIRSTY 116 (121)
Q Consensus 100 ~Ns~~~i~~~G~i~~~y 116 (121)
.-++++|+++|.++..+
T Consensus 110 ~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 110 ARAVFVIDENGKVIYVE 126 (143)
T ss_pred ceEEEEEcCCCeEEEEE
Confidence 45789999999987655
No 475
>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]
Probab=33.13 E-value=38 Score=21.27 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=8.7
Q ss_pred cEEEccCCcc
Q 033342 40 KLLCFPENFS 49 (121)
Q Consensus 40 dlvv~PE~~~ 49 (121)
|.|+|||+.-
T Consensus 89 ~mII~PEMvG 98 (152)
T KOG0898|consen 89 NMIIVPEMVG 98 (152)
T ss_pred cceeeHhhhc
Confidence 8999999964
No 476
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=33.09 E-value=54 Score=19.37 Aligned_cols=16 Identities=31% Similarity=0.366 Sum_probs=12.8
Q ss_pred EEEEECCCCCEEeeee
Q 033342 102 THVLLDDAGNIRSTYR 117 (121)
Q Consensus 102 s~~~i~~~G~i~~~y~ 117 (121)
++++++++|+++..|.
T Consensus 103 ~~~~ld~~G~v~~~~~ 118 (127)
T cd03010 103 ETFLIDGDGIIRYKHV 118 (127)
T ss_pred eEEEECCCceEEEEEe
Confidence 4789999999877664
No 477
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=32.99 E-value=1e+02 Score=17.70 Aligned_cols=46 Identities=11% Similarity=0.090 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEe
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRS 114 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~ 114 (121)
+-++.+.+..++.++.+..+..... ........++++.+|+|..+.
T Consensus 76 ~dv~~~~~~l~~~g~~~~~~p~~~~-~~~~~~~~~~~~~DPdG~~iE 121 (125)
T cd08357 76 EEFDALAERLEAAGVEFLIEPYTRF-EGQPGEQETFFLKDPSGNALE 121 (125)
T ss_pred HHHHHHHHHHHHCCCcEecCcceec-cCCcCceeEEEEECCCCCEEE
Confidence 4566777777788887765422221 111123577889999997753
No 478
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=32.95 E-value=1.2e+02 Score=20.59 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.++.+ .+..|++-+.... .-..+.+..+++. +|+++
T Consensus 176 l~~~l~~~~~-~~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~ 216 (256)
T TIGR03873 176 TLALVRELAA-TGVTVVAALHDLN--LAASYCDHVVVLD-GGRVV 216 (256)
T ss_pred HHHHHHHHHh-cCCEEEEEeCCHH--HHHHhCCEEEEEe-CCCEE
Confidence 3444455443 3555555432220 1123456667775 67764
No 479
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=32.87 E-value=1.2e+02 Score=18.71 Aligned_cols=23 Identities=9% Similarity=0.183 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCcEEEccCCcc
Q 033342 27 CSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 27 ~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
.++.++.|.++++|+|.+.=+..
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t 61 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYG 61 (128)
T ss_pred HHHHHHHHHHcCCCEEEEecccc
Confidence 35667777888999999865443
No 480
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=32.80 E-value=1.6e+02 Score=20.15 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=18.4
Q ss_pred HHHHHHHHHHCCCcEEEccCCcc
Q 033342 27 CSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 27 ~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
-.+.+++|.+.++|+|+.=+-.+
T Consensus 46 t~~vi~~Ai~~~~dlIitHHP~~ 68 (249)
T TIGR00486 46 SESVADEAVRLGADLIITHHPLI 68 (249)
T ss_pred CHHHHHHHHHCCCCEEEEcCccc
Confidence 34667888889999999888665
No 481
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=32.80 E-value=90 Score=20.25 Aligned_cols=68 Identities=21% Similarity=0.129 Sum_probs=34.9
Q ss_pred HHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCE
Q 033342 33 EAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNI 112 (121)
Q Consensus 33 ~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i 112 (121)
.|...+++++++=|-+. +-+.. ......+.+.++.++ +..+++-+.... ..-..+.+..++++ +|++
T Consensus 124 ral~~~p~illlDEP~~--~LD~~--------~~~~l~~~l~~~~~~-~~tiii~sh~~~-~~~~~~~d~v~~l~-~G~i 190 (194)
T cd03213 124 LELVSNPSLLFLDEPTS--GLDSS--------SALQVMSLLRRLADT-GRTIICSIHQPS-SEIFELFDKLLLLS-QGRV 190 (194)
T ss_pred HHHHcCCCEEEEeCCCc--CCCHH--------HHHHHHHHHHHHHhC-CCEEEEEecCch-HHHHHhcCEEEEEe-CCEE
Confidence 34456899999999765 22111 112344555555443 555544432210 01113456777776 6776
Q ss_pred E
Q 033342 113 R 113 (121)
Q Consensus 113 ~ 113 (121)
.
T Consensus 191 ~ 191 (194)
T cd03213 191 I 191 (194)
T ss_pred E
Confidence 3
No 482
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=32.72 E-value=73 Score=25.03 Aligned_cols=43 Identities=19% Similarity=0.111 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.++++++++.+++-+-... .-..+-+..+++. +|+++
T Consensus 206 ~l~~ll~~l~~~~g~tvi~itHdl~--~~~~~adri~vl~-~G~i~ 248 (623)
T PRK10261 206 QILQLIKVLQKEMSMGVIFITHDMG--VVAEIADRVLVMY-QGEAV 248 (623)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHH--HHHHhCCEEEEee-CCeec
Confidence 4556666777666776665542210 1113345566665 56664
No 483
>PRK07505 hypothetical protein; Provisional
Probab=32.60 E-value=2e+02 Score=20.99 Aligned_cols=37 Identities=8% Similarity=0.196 Sum_probs=22.5
Q ss_pred CCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEe
Q 033342 37 AGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSL 86 (121)
Q Consensus 37 ~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~ 86 (121)
.+..++++-|-..++|... + .+.+.++|+++++.+++
T Consensus 178 ~~~~~~vl~~p~~~~G~~~----------~---~~~i~~l~~~~~~~li~ 214 (402)
T PRK07505 178 TNKTVAYVADGVYSMGGIA----------P---VKELLRLQEKYGLFLYI 214 (402)
T ss_pred cCCCEEEEEecccccCCcC----------C---HHHHHHHHHHcCCEEEE
Confidence 3456777766554333211 1 57788888888877653
No 484
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=32.41 E-value=1.1e+02 Score=20.42 Aligned_cols=40 Identities=10% Similarity=0.212 Sum_probs=18.2
Q ss_pred HHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 70 MQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 70 ~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.++++ .+..+++-+.... .-.+..+..+++. +|+++
T Consensus 177 ~~~l~~~~~-~g~tiii~sH~~~--~~~~~~d~v~~l~-~G~i~ 216 (241)
T PRK10895 177 KRIIEHLRD-SGLGVLITDHNVR--ETLAVCERAYIVS-QGHLI 216 (241)
T ss_pred HHHHHHHHh-cCCEEEEEEcCHH--HHHHhcCEEEEEe-CCeEE
Confidence 344455443 4555544432210 1113445566665 67664
No 485
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=32.40 E-value=1.6e+02 Score=20.69 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHCCCcEEEc
Q 033342 23 NFATCSRLVKEAASAGAKLLCF 44 (121)
Q Consensus 23 n~~~~~~~~~~a~~~~~dlvv~ 44 (121)
+.+...++.+.|.+.|+|-|+.
T Consensus 81 ~t~~~i~la~~a~~~Gad~v~v 102 (290)
T TIGR00683 81 NLKEAVELGKYATELGYDCLSA 102 (290)
T ss_pred CHHHHHHHHHHHHHhCCCEEEE
Confidence 4566677778888889986655
No 486
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=32.36 E-value=2.2e+02 Score=21.47 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHCCCcEE-EccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 24 FATCSRLVKEAASAGAKLL-CFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 24 ~~~~~~~~~~a~~~~~dlv-v~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
-+.+.+.++++.+.|+.-+ ++.+.|.-.|. ......+.+.+.|+++++.++.+.
T Consensus 74 ~~~~~~~l~e~~~~gv~~~vi~s~gf~e~g~-----------~g~~~~~~l~~~a~~~girvlGPn 128 (447)
T TIGR02717 74 AKYVPQVVEECGEKGVKGAVVITAGFKEVGE-----------EGAELEQELVEIARKYGMRLLGPN 128 (447)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccccCc-----------chHHHHHHHHHHHHHcCCEEEecC
Confidence 4566777777777787754 54444430110 112234678999999999987553
No 487
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=32.31 E-value=51 Score=16.86 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=11.7
Q ss_pred HHHHHHHHcCcEEEeccc
Q 033342 72 GYCSLARESSMWLSLGGF 89 (121)
Q Consensus 72 ~l~~~a~~~~~~ii~G~~ 89 (121)
.-.++|++++.+++.||=
T Consensus 6 ~A~~~A~~~~lp~~~gSD 23 (56)
T PF13263_consen 6 RAAELAEKYGLPFTGGSD 23 (56)
T ss_dssp HHHHHHHHTT--EEEE--
T ss_pred HHHHHHHHcCCCeEeEEc
Confidence 456789999999999973
No 488
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=32.26 E-value=1.7e+02 Score=20.27 Aligned_cols=82 Identities=11% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHHHCCCcEEEccCCccCCCCCCchh------hhcccCC-CChHHHHHHHHHHHcCcEEEeccceeecCCCCc--e
Q 033342 29 RLVKEAASAGAKLLCFPENFSYVGDKDADN------IKIAEPL-DGPIMQGYCSLARESSMWLSLGGFQEKGSDDAR--L 99 (121)
Q Consensus 29 ~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~------~~~~~~~-~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~--~ 99 (121)
..++.|..-|++-|++|.... ..+...-+ ....+.. .......+.++.++.|.+++..+.......... .
T Consensus 125 aIiRtA~a~Gv~~Vi~~~~~~-~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~~~~~~~~~G~~v~~t~~~~~~~~~~~~~~ 203 (260)
T COG0566 125 AIIRTADAFGVDGVILPKRRA-DPLNPKVIRASAGAAFHVPVIRVTNLARTLLELLKEAGFWVVATSLDGEVDLYETDLP 203 (260)
T ss_pred hHHhhHHHhCCCEEEECCCcc-CCccceeEEecCChheeceeEEEeccHHHHHHHHHHcCeEEEEECCCCCcchhhcccc
Confidence 445666677999999999765 33332111 0001101 111466778888889999965433221101111 1
Q ss_pred EEEEEEECCCCC
Q 033342 100 CNTHVLLDDAGN 111 (121)
Q Consensus 100 ~Ns~~~i~~~G~ 111 (121)
-.++++++.+|+
T Consensus 204 ~~~aLvlG~Eg~ 215 (260)
T COG0566 204 KKTALVLGNEGE 215 (260)
T ss_pred CCEEEEECCCCC
Confidence 355778887774
No 489
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=32.22 E-value=92 Score=21.88 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
+.+.+.+++++ +..+++-+.... .-.++-+..++++ +|+++
T Consensus 163 l~~~l~~~~~~-g~tvi~~sH~~~--~~~~~~d~v~~l~-~G~i~ 203 (302)
T TIGR01188 163 IWDYIRALKEE-GVTILLTTHYME--EADKLCDRIAIID-HGRII 203 (302)
T ss_pred HHHHHHHHHhC-CCEEEEECCCHH--HHHHhCCEEEEEE-CCEEE
Confidence 34445555443 555655543220 1112345555554 56654
No 490
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=32.18 E-value=1.2e+02 Score=20.72 Aligned_cols=43 Identities=21% Similarity=0.180 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 68 PIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 68 ~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
.+.+.+.+++++.+..+++-+.... .-..+.+..+++. +|+++
T Consensus 178 ~l~~~l~~~~~~~~~tiii~sH~~~--~~~~~~d~i~~l~-~G~i~ 220 (258)
T PRK13548 178 HVLRLARQLAHERGLAVIVVLHDLN--LAARYADRIVLLH-QGRLV 220 (258)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH--HHHHhcCEEEEEE-CCEEE
Confidence 3455566666444555554432220 1113455666665 57654
No 491
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=32.02 E-value=1.7e+02 Score=21.65 Aligned_cols=48 Identities=23% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcC
Q 033342 20 LAANFATCSRLVKEAASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESS 81 (121)
Q Consensus 20 ~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~ 81 (121)
...+.+++.+..+..++.+.|+++-|= ++ +|+..+ ....+-++|++.+
T Consensus 237 ~dYdv~kvle~aE~i~~a~idvlIaPv-~l-PG~ND~------------E~~~iIe~A~~iG 284 (414)
T COG2100 237 KDYDVKKVLEVAEYIANAGIDVLIAPV-WL-PGVNDD------------EMPKIIEWAREIG 284 (414)
T ss_pred cccCHHHHHHHHHHHHhCCCCEEEeee-ec-CCcChH------------HHHHHHHHHHHhC
Confidence 355788999999988899999999995 55 676543 3445666676644
No 492
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=31.95 E-value=69 Score=24.57 Aligned_cols=44 Identities=18% Similarity=0.151 Sum_probs=26.7
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEec
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLG 87 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G 87 (121)
+.++++.+++-=|... .+.+...-.....++++|++.++.+++-
T Consensus 521 llaerpn~~~iDEF~A----------hLD~~TA~rVArkiselaRe~giTlivv 564 (593)
T COG2401 521 LLAERPNVLLIDEFAA----------HLDELTAVRVARKISELAREAGITLIVV 564 (593)
T ss_pred HHhcCCCcEEhhhhhh----------hcCHHHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3455666666666554 1111122356677899999999988654
No 493
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=31.90 E-value=1.1e+02 Score=23.16 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEEee
Q 033342 69 IMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIRST 115 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~~~ 115 (121)
..+.+.+++++ +..+++-+.... .-..+-+..+++. +|+++..
T Consensus 435 l~~~l~~l~~~-g~tviivsHd~~--~~~~~~d~i~~l~-~g~i~~~ 477 (501)
T PRK11288 435 IYNVIYELAAQ-GVAVLFVSSDLP--EVLGVADRIVVMR-EGRIAGE 477 (501)
T ss_pred HHHHHHHHHhC-CCEEEEECCCHH--HHHhhCCEEEEEE-CCEEEEE
Confidence 34445555544 556655543321 1123456667775 6776543
No 494
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=31.87 E-value=73 Score=24.90 Aligned_cols=66 Identities=9% Similarity=0.180 Sum_probs=31.6
Q ss_pred HHHCCCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEeccceeecCCCCceEEEEEEECCCCCEE
Q 033342 34 AASAGAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGGFQEKGSDDARLCNTHVLLDDAGNIR 113 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~~~~~~~~~~~~~Ns~~~i~~~G~i~ 113 (121)
|...+++++++-|-+. +-+ ......+.+.+.++++ .+..+++-+.... .-..+-+..+++. +|++.
T Consensus 157 AL~~~P~LLLLDEPTs--gLD--------~~sr~~LlelL~el~~-~G~TIIIVSHdl~--~i~~l~DrIivL~-~GkIv 222 (549)
T PRK13545 157 SVHINPDILVIDEALS--VGD--------QTFTKKCLDKMNEFKE-QGKTIFFISHSLS--QVKSFCTKALWLH-YGQVK 222 (549)
T ss_pred HHHhCCCEEEEECCcc--cCC--------HHHHHHHHHHHHHHHh-CCCEEEEEECCHH--HHHHhCCEEEEEE-CCEEE
Confidence 3445788888888664 211 1011234555555543 3555544432210 1112345566665 67664
No 495
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.87 E-value=1.1e+02 Score=20.67 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=9.7
Q ss_pred ceEEEEEEECCCCCEE
Q 033342 98 RLCNTHVLLDDAGNIR 113 (121)
Q Consensus 98 ~~~Ns~~~i~~~G~i~ 113 (121)
.+.+..++++ +|+++
T Consensus 211 ~~~d~v~~l~-~G~i~ 225 (251)
T PRK14270 211 RVSDYTAFFL-MGDLI 225 (251)
T ss_pred HhcCEEEEEE-CCeEE
Confidence 3456777775 67764
No 496
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=31.81 E-value=61 Score=22.26 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=12.8
Q ss_pred HHHCCCcEEEccCCcc
Q 033342 34 AASAGAKLLCFPENFS 49 (121)
Q Consensus 34 a~~~~~dlvv~PE~~~ 49 (121)
|.-++++++||-|-+.
T Consensus 147 Alvh~P~i~vlDEP~s 162 (245)
T COG4555 147 ALVHDPSILVLDEPTS 162 (245)
T ss_pred HHhcCCCeEEEcCCCC
Confidence 4456899999999775
No 497
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=31.80 E-value=91 Score=20.99 Aligned_cols=14 Identities=7% Similarity=0.332 Sum_probs=8.6
Q ss_pred eEEEEEEECCCCCEE
Q 033342 99 LCNTHVLLDDAGNIR 113 (121)
Q Consensus 99 ~~Ns~~~i~~~G~i~ 113 (121)
+.+..++++ +|+++
T Consensus 209 ~~d~i~~l~-~G~i~ 222 (247)
T TIGR00972 209 ISDRTAFFY-DGELV 222 (247)
T ss_pred hCCEEEEEE-CCEEE
Confidence 445666675 67664
No 498
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=31.76 E-value=1.9e+02 Score=21.84 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=30.3
Q ss_pred cccEEEEEEeccc---cC----------------HHHHHHHHHHHHHHHHHCCCcEEEccCCcc
Q 033342 5 HSVRVAVAQMTSI---ND----------------LAANFATCSRLVKEAASAGAKLLCFPENFS 49 (121)
Q Consensus 5 ~~~~ia~vQ~~~~---~~----------------~~~n~~~~~~~~~~a~~~~~dlvv~PE~~~ 49 (121)
...|||++|+.+. .| ..+-.+-++...++-++.||.+++..-.-+
T Consensus 237 ekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSIL 300 (534)
T KOG0358|consen 237 EKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSIL 300 (534)
T ss_pred hhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHH
Confidence 4589999998852 22 123344455666666788999999877554
No 499
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=31.76 E-value=1.4e+02 Score=21.88 Aligned_cols=18 Identities=11% Similarity=0.198 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCcEEEe
Q 033342 69 IMQGYCSLARESSMWLSL 86 (121)
Q Consensus 69 ~~~~l~~~a~~~~~~ii~ 86 (121)
-++.+.++|+++++++++
T Consensus 153 dl~~I~~la~~~g~~liv 170 (377)
T TIGR01324 153 DIPAIAKAARNPGIVIMI 170 (377)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 367889999999988764
No 500
>PRK07004 replicative DNA helicase; Provisional
Probab=31.75 E-value=1.7e+02 Score=22.15 Aligned_cols=63 Identities=16% Similarity=0.047 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHH-C-CCcEEEccCCccCCCCCCchhhhcccCCCChHHHHHHHHHHHcCcEEEecc
Q 033342 23 NFATCSRLVKEAAS-A-GAKLLCFPENFSYVGDKDADNIKIAEPLDGPIMQGYCSLARESSMWLSLGG 88 (121)
Q Consensus 23 n~~~~~~~~~~a~~-~-~~dlvv~PE~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~ii~G~ 88 (121)
++..+...+++.+. . +.++|+.-=.-+..+.....- . ...-+.+...|+.+|++++++|++-+
T Consensus 307 ~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~-r--~~ei~~Isr~LK~lAkel~ipVi~ls 371 (460)
T PRK07004 307 NPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGEN-R--ATEISEISRSLKSLAKELDVPVIALS 371 (460)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCc-H--HHHHHHHHHHHHHHHHHhCCeEEEEe
Confidence 34444444444433 2 478888877665221110000 0 00124678889999999999998665
Done!