BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033343
MLAVRSAFTDRSSALLTMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAIN
EYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANEN
S

High Scoring Gene Products

Symbol, full name Information P value
SNX2a
sorting nexin 2A
protein from Arabidopsis thaliana 2.4e-44
SNX2b
sorting nexin 2B
protein from Arabidopsis thaliana 2.8e-43
SNX4
cDNA FLJ50837, highly similar to Sorting nexin-4
protein from Homo sapiens 0.00091

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033343
        (121 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2171218 - symbol:SNX2a "sorting nexin 2A" spec...   467  2.4e-44   1
TAIR|locus:2182880 - symbol:SNX2b "sorting nexin 2B" spec...   457  2.8e-43   1
UNIPROTKB|B4DQV4 - symbol:SNX4 "Sorting nexin-4" species:...    91  0.00091   1


>TAIR|locus:2171218 [details] [associations]
            symbol:SNX2a "sorting nexin 2A" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0007154 "cell
            communication" evidence=IEA] [GO:0035091 "phosphatidylinositol
            binding" evidence=IEA;ISS] [GO:0035556 "intracellular signal
            transduction" evidence=ISS] [GO:0007165 "signal transduction"
            evidence=ISS] [GO:0030904 "retromer complex" evidence=TAS]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0032502 "developmental process" evidence=IGI]
            [GO:0032585 "multivesicular body membrane" evidence=IDA]
            [GO:0043621 "protein self-association" evidence=IPI] [GO:0051604
            "protein maturation" evidence=IMP] [GO:0090351 "seedling
            development" evidence=IGI] InterPro:IPR001683 Pfam:PF00787
            PROSITE:PS50195 PROSITE:PS51021 SMART:SM00312 GO:GO:0005829
            GO:GO:0005794 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0015031
            GO:GO:0032585 GO:GO:0035091 GO:GO:0051604 GO:GO:0007154
            eggNOG:COG5391 Gene3D:3.30.1520.10 SUPFAM:SSF64268 EMBL:AB025632
            GO:GO:0030904 GO:GO:0090351 InterPro:IPR015404 Pfam:PF09325
            EMBL:AY099775 EMBL:BT000285 IPI:IPI00521979 RefSeq:NP_200652.2
            UniGene:At.29281 ProteinModelPortal:Q8L5Z7 SMR:Q8L5Z7 IntAct:Q8L5Z7
            STRING:Q8L5Z7 PaxDb:Q8L5Z7 PRIDE:Q8L5Z7 EnsemblPlants:AT5G58440.1
            GeneID:835957 KEGG:ath:AT5G58440 TAIR:At5g58440
            HOGENOM:HOG000241367 InParanoid:Q8L5Z7 OMA:TYKMDEN PhylomeDB:Q8L5Z7
            ProtClustDB:CLSN2690248 Genevestigator:Q8L5Z7 Uniprot:Q8L5Z7
        Length = 587

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 98/131 (74%), Positives = 110/131 (83%)

Query:     1 MLAVRSAFTDRSSALLTM------------RAEKLEAASSKIFGGDKSRIRKIEELKETI 48
             M+AV+ AF DRSSALLT+            R EKLEAASSK+FGGDKSRIRKIEELKETI
Sbjct:   453 MMAVQGAFADRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRKIEELKETI 512

Query:    49 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 108
             +VTEDAK+VAI  YERIKENNR+E+ERLD+ERRADF+NM+KGFVVNQVGYAEK+ NVWAK
Sbjct:   513 KVTEDAKNVAIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWAK 572

Query:   109 VAEETSGYANE 119
             VAEETS Y  E
Sbjct:   573 VAEETSQYDRE 583


>TAIR|locus:2182880 [details] [associations]
            symbol:SNX2b "sorting nexin 2B" species:3702 "Arabidopsis
            thaliana" [GO:0005634 "nucleus" evidence=ISM] [GO:0007154 "cell
            communication" evidence=IEA] [GO:0035091 "phosphatidylinositol
            binding" evidence=IEA] [GO:0035556 "intracellular signal
            transduction" evidence=ISS] [GO:0030904 "retromer complex"
            evidence=TAS] [GO:0005543 "phospholipid binding" evidence=IDA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0016192 "vesicle-mediated
            transport" evidence=IMP] [GO:0045324 "late endosome to vacuole
            transport" evidence=IMP] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005829 "cytosol" evidence=IDA] [GO:0032502
            "developmental process" evidence=IGI] [GO:0032585 "multivesicular
            body membrane" evidence=IDA] [GO:0046982 "protein
            heterodimerization activity" evidence=IPI] [GO:0051604 "protein
            maturation" evidence=IMP] [GO:0090351 "seedling development"
            evidence=IGI] InterPro:IPR001683 Pfam:PF00787 PROSITE:PS50195
            PROSITE:PS51021 SMART:SM00312 GO:GO:0005829 GO:GO:0005794
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0016192 GO:GO:0005543
            GO:GO:0015031 EMBL:AL163652 GO:GO:0032585 GO:GO:0035091
            GO:GO:0051604 GO:GO:0007154 GO:GO:0045324 eggNOG:COG5391
            Gene3D:3.30.1520.10 SUPFAM:SSF64268 GO:GO:0030904 GO:GO:0090351
            UniGene:At.28633 UniGene:At.69715 InterPro:IPR015404 Pfam:PF09325
            HOGENOM:HOG000241367 ProtClustDB:CLSN2690248 EMBL:AK316886
            EMBL:AK220586 EMBL:AK230282 IPI:IPI00546538 PIR:T48483
            RefSeq:NP_196329.2 UniGene:At.74272 ProteinModelPortal:B9DFS6
            SMR:B9DFS6 IntAct:B9DFS6 PaxDb:B9DFS6 PRIDE:B9DFS6
            EnsemblPlants:AT5G07120.1 GeneID:830603 KEGG:ath:AT5G07120
            TAIR:At5g07120 InParanoid:Q9LYQ3 OMA:TWFEDKF PhylomeDB:B9DFS6
            Genevestigator:B9DFS6 Uniprot:B9DFS6
        Length = 572

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 96/133 (72%), Positives = 110/133 (82%)

Query:     1 MLAVRSAFTDRSSALLTM------------RAEKLEAASSKIFGGDKSRIRKIEELKETI 48
             M+AV+ AF DRSSALLT+            RAEKLE ASSK+FGGDKSRI+KIEELKETI
Sbjct:   440 MMAVQGAFADRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKETI 499

Query:    49 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 108
             +VTED+K+VAI EYE+IKENN +E+ERLD+ERRADFLNM+KGFV NQVGYAEKIANVW K
Sbjct:   500 KVTEDSKNVAIREYEQIKENNWSEVERLDRERRADFLNMMKGFVANQVGYAEKIANVWTK 559

Query:   109 VAEETSGYANENS 121
             VAEET  Y  E+S
Sbjct:   560 VAEETRQYDRESS 572


>UNIPROTKB|B4DQV4 [details] [associations]
            symbol:SNX4 "Sorting nexin-4" species:9606 "Homo sapiens"
            [GO:0007154 "cell communication" evidence=IEA] [GO:0035091
            "phosphatidylinositol binding" evidence=IEA] InterPro:IPR001683
            Pfam:PF00787 PROSITE:PS50195 GO:GO:0035091 GO:GO:0007154
            Gene3D:3.30.1520.10 SUPFAM:SSF64268 HOVERGEN:HBG017826
            UniGene:Hs.507243 HGNC:HGNC:11175 ChiTaRS:SNX4 EMBL:AC080096
            EMBL:AC117487 EMBL:AK298972 IPI:IPI01009795 SMR:B4DQV4
            STRING:B4DQV4 Ensembl:ENST00000536067 Uniprot:B4DQV4
        Length = 305

 Score = 91 (37.1 bits), Expect = 0.00091, P = 0.00091
 Identities = 27/98 (27%), Positives = 47/98 (47%)

Query:    17 TMRAEKLEAASSKIFGGD--KSRIRKIEELKETIRVTEDA-KSVAINEYERIKENNRTEL 73
             T+R   L+  ++K+FG +  + R  +I+ L+E I   E   KS  +   E +K N   ++
Sbjct:   204 TVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVK-NAWADI 262

Query:    74 ERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111
             ER  +++  D    L  + V Q+   +K   VW    E
Sbjct:   263 ERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 300


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.327    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  10 23  0.40    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  540 (57 KB)
  Total size of DFA:  135 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.90u 0.10s 21.00t   Elapsed:  00:00:01
  Total cpu time:  20.90u 0.10s 21.00t   Elapsed:  00:00:01
  Start:  Fri May 10 23:57:43 2013   End:  Fri May 10 23:57:44 2013

Back to top