BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033343
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
Pyrophosphatase
Length = 175
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 33 GDKSRIRKIEELKETIRVTEDAKSVAIN------EYERIKENNRTELERLDKERRADFLN 86
G +R R + LK T EDAK VA+ EY+ IK+ N +L L K + A F
Sbjct: 82 GSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVN--DLPELLKAQIAHFFE 139
Query: 87 MLK 89
K
Sbjct: 140 HYK 142
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 33 GDKSRIRKIEELKETIRVTEDAKSVAIN------EYERIKENNRTELERLDKERRADFLN 86
G +R R + LK T EDAK VA+ EY+ IK+ N +L L K + A F
Sbjct: 82 GSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVN--DLPELLKAQIAHFFE 139
Query: 87 MLK 89
K
Sbjct: 140 HYK 142
>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
Pyrophosphatase
pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
Pyrophosphatase
pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
Pyrophosphate And Fluoride
pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
Pyrophosphatase From Escherichia Coli
Length = 175
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 33 GDKSRIRKIEELKETIRVTEDAKSVAIN------EYERIKENNRTELERLDKERRADFLN 86
G +R R + LK T EDAK VA+ EY+ IK+ N +L L K + A F
Sbjct: 82 GSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVN--DLPELLKAQIAHFFE 139
Query: 87 MLK 89
K
Sbjct: 140 HYK 142
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 33 GDKSRIRKIEELKETIRVTEDAKSVAIN------EYERIKENNRTELERLDKERRADFLN 86
G R R + LK T EDAK VA+ EY+ IK+ N +L L K + A F
Sbjct: 82 GSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVN--DLPELLKAQIAHFFE 139
Query: 87 MLK 89
K
Sbjct: 140 HYK 142
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 33 GDKSRIRKIEELKETIRVTEDAKSVAIN------EYERIKENNRTELERLDKERRADFLN 86
G R R + LK T EDAK VA+ EY+ IK+ N +L L K + A F
Sbjct: 82 GSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVN--DLPELLKAQIAHFFE 139
Query: 87 MLK 89
K
Sbjct: 140 HYK 142
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
Coli
Length = 175
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 33 GDKSRIRKIEELKETIRVTEDAKSVAIN------EYERIKENNRTELERLDKERRADFLN 86
G R R + LK T EDAK VA+ EY+ IK+ N +L L K + A F
Sbjct: 82 GSVIRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVN--DLPELLKAQIAHFFE 139
Query: 87 MLK 89
K
Sbjct: 140 HYK 142
>pdb|3HHM|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
Length = 1091
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL-DKERRADFLNMLKGFV 92
R++E +++ I +T+ I + E+ E + +++ L ++ RR DF++ L+GF+
Sbjct: 727 RQVEAMEKLINLTD------ILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFL 775
>pdb|2RD0|A Chain A, Structure Of A Human P110alpha/p85alpha Complex
Length = 1096
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL-DKERRADFLNMLKGFV 92
R++E +++ I +T+ I + E+ E + +++ L ++ RR DF++ L+GF+
Sbjct: 732 RQVEAMEKLINLTD------ILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFL 780
>pdb|3HIZ|A Chain A, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 1096
Score = 28.9 bits (63), Expect = 0.77, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL-DKERRADFLNMLKGFV 92
R++E +++ I +T+ I + E+ E + +++ L ++ RR DF++ L+GF+
Sbjct: 732 RQVEAMEKLINLTD------ILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFL 780
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 33 GDKSRIRKIEELKETIRVTEDAKSVAIN------EYERIKENNRTELERLDKERRADFLN 86
G R R + LK T EDAK VA+ EY+ IK+ N +L L K + A F
Sbjct: 82 GSVIRCRPVGVLKMTNEAGEDAKLVAVPHSKLSKEYDHIKDVN--DLPELLKAQIAHFFE 139
Query: 87 MLK 89
K
Sbjct: 140 HYK 142
>pdb|3ZIM|A Chain A, Discovery Of A Potent And Isoform-selective Targeted
Covalent Inhibitor Of The Lipid Kinase Pi3kalpha
Length = 940
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 34/55 (61%), Gaps = 7/55 (12%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL-DKERRADFLNMLKGFV 92
R++E +++ I +T+ I + E+ E + +++ L ++ RR DF++ L+GF+
Sbjct: 598 RQVEAMEKLINLTD------ILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFL 646
>pdb|2Q13|A Chain A, Crystal Structure Of Bar-Ph Domain Of Appl1
Length = 385
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 38 IRKIEELKETIRVTEDAKSVAINEYERI---KENNRTELERLD---KERRADFLNMLKGF 91
+++I LKE ++ + AIN Y R+ +EN++ + E + R+ M+ F
Sbjct: 123 LKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYF 182
Query: 92 -VVNQVGYAEKIA 103
+N + Y +KIA
Sbjct: 183 CALNTLQYKKKIA 195
>pdb|4G84|A Chain A, Crystal Structure Of Human Hisrs
pdb|4G84|B Chain B, Crystal Structure Of Human Hisrs
Length = 464
Score = 26.9 bits (58), Expect = 2.8, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGY 98
+++E L+E IR TE VA + + ++E + E D +A+ L ++NQ+ Y
Sbjct: 353 QRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPKLLNQLQY 412
Query: 99 AEK 101
E+
Sbjct: 413 CEE 415
>pdb|1V38|A Chain A, Solution Structure Of The Sterile Alpha Motif (Sam)
Domain Of Mouse Samsn1
Length = 78
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYER------IKENNRTELERLDKERRADFLN 86
+ I+E E I + E ++ +N YE IKE++ EL D E RA L+
Sbjct: 13 QTIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLS 66
>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
Thermophilus Hb8
Length = 496
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 87 MLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 118
+LKG + VGY EK ANV + ET YAN
Sbjct: 83 VLKGPLETPVGYGEKSANVTLRKLFET--YAN 112
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.126 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,986,891
Number of Sequences: 62578
Number of extensions: 103617
Number of successful extensions: 435
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 44
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)