BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033343
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L5Z7|SNX2A_ARATH Sorting nexin 2A OS=Arabidopsis thaliana GN=SNX2A PE=1 SV=1
Length = 587
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/131 (74%), Positives = 110/131 (83%), Gaps = 12/131 (9%)
Query: 1 MLAVRSAFTDRSSALLTM------------RAEKLEAASSKIFGGDKSRIRKIEELKETI 48
M+AV+ AF DRSSALLT+ R EKLEAASSK+FGGDKSRIRKIEELKETI
Sbjct: 453 MMAVQGAFADRSSALLTVQTLLSELPSLQTRVEKLEAASSKVFGGDKSRIRKIEELKETI 512
Query: 49 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 108
+VTEDAK+VAI YERIKENNR+E+ERLD+ERRADF+NM+KGFVVNQVGYAEK+ NVWAK
Sbjct: 513 KVTEDAKNVAIKGYERIKENNRSEVERLDRERRADFMNMMKGFVVNQVGYAEKMGNVWAK 572
Query: 109 VAEETSGYANE 119
VAEETS Y E
Sbjct: 573 VAEETSQYDRE 583
>sp|B9DFS6|SNX2B_ARATH Sorting nexin 2B OS=Arabidopsis thaliana GN=SNX2B PE=1 SV=1
Length = 572
Score = 189 bits (479), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 96/133 (72%), Positives = 110/133 (82%), Gaps = 12/133 (9%)
Query: 1 MLAVRSAFTDRSSALLTM------------RAEKLEAASSKIFGGDKSRIRKIEELKETI 48
M+AV+ AF DRSSALLT+ RAEKLE ASSK+FGGDKSRI+KIEELKETI
Sbjct: 440 MMAVQGAFADRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKETI 499
Query: 49 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 108
+VTED+K+VAI EYE+IKENN +E+ERLD+ERRADFLNM+KGFV NQVGYAEKIANVW K
Sbjct: 500 KVTEDSKNVAIREYEQIKENNWSEVERLDRERRADFLNMMKGFVANQVGYAEKIANVWTK 559
Query: 109 VAEETSGYANENS 121
VAEET Y E+S
Sbjct: 560 VAEETRQYDRESS 572
>sp|A1A200|DNLJ_BIFAA DNA ligase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM
20083 / NCTC 11814 / E194a) GN=ligA PE=3 SV=1
Length = 892
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 44 LKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVG 97
++E I+V+ S Y R EN R L+ +DK R AD +L + ++G
Sbjct: 683 IREEIKVSRGGTSSVQPVYIRPAENTRKMLDEMDKARHADLWRVLVALSIRRLG 736
>sp|Q93GG2|BIOB_ACICA Biotin synthase OS=Acinetobacter calcoaceticus GN=bioB PE=3 SV=1
Length = 329
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 8 FTDRSSALLTMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKE 67
F DR + L +R ++ S I G +SR +I L+E + +SV IN I+
Sbjct: 170 FDDRLNTLDHVRHAGMKVCSGGIVGLGESRNDRIGLLQELATMPVHPESVPINMLVPIEG 229
Query: 68 NNRTELERLD 77
E+E+LD
Sbjct: 230 TPLAEVEKLD 239
>sp|Q6C9X0|SNX41_YARLI Sorting nexin-41 OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=SNX41 PE=3 SV=1
Length = 570
Score = 32.3 bits (72), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%)
Query: 36 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 95
SR + I + +E I E A VA + E+ +LER ER AD M++ F+
Sbjct: 490 SRRQGIGKTREQIGQLEQALEVAQKDIVVANESVEKDLERFRAEREADLKCMIRAFLKCH 549
Query: 96 VGYAEKIANVWAKVAEE 112
+ +A++ + W E
Sbjct: 550 IDWAKQNLDTWQSAQAE 566
>sp|A1A4L0|SNX4_BOVIN Sorting nexin-4 OS=Bos taurus GN=SNX4 PE=2 SV=1
Length = 450
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 17 TMRAEKLEAASSKIFGGDKSRIR--KIEELKETIRVTED---AKSVAINEYERIKENNRT 71
T+R L+ ++K+FG + R +I+ L+E I+ E +K++ E+ R N
Sbjct: 349 TVRTFSLKGMTTKLFGQETPEQREARIKMLEEQIKEGEQQLKSKNLEGREFVR---NAWA 405
Query: 72 ELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111
++ER +++ D L + V Q+ +K VW E
Sbjct: 406 DIERFKEQKNHDLKEALISYAVMQISMCKKGIQVWTNAKE 445
>sp|Q9SIW9|FB107_ARATH F-box protein At2g16300 OS=Arabidopsis thaliana GN=At2g16300 PE=2
SV=3
Length = 322
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 45 KETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 104
K+ IR ++ E ++ R E +LD E DF + G + N V Y + +
Sbjct: 152 KQPIRYRYGLPCHLWDKLEWVEITERVEFLKLDSEDSRDFAVLFAGRMCNLVMYRSRNMS 211
Query: 105 VWAKVAEETSGYANEN 120
W +V E YA ++
Sbjct: 212 -WTQVVEHPEKYAYQD 226
>sp|Q9W590|LSG1_DROME Large subunit GTPase 1 homolog OS=Drosophila melanogaster GN=ns3
PE=1 SV=1
Length = 606
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRA 82
R +EE+K+++ EDA +V +Y+ I E EL RL ++ +
Sbjct: 268 RAVEEIKQSLDSVEDALNVIEQKYKTIPETQNDELPRLPGDKNS 311
>sp|B8FUI8|PDRP_DESHD Putative pyruvate, phosphate dikinase regulatory protein
OS=Desulfitobacterium hafniense (strain DCB-2 / DSM
10664) GN=Dhaf_4252 PE=3 SV=1
Length = 273
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 20 AEKLEAASSKIFGGDKSRIRKIEELKETIRVT----EDAKSVAINEYERIKENNRTELER 75
AE + A++ F G +++IRK+ +++ I + E AK AI Y + + R LE
Sbjct: 19 AEYVSRAAAAQFSGIRTKIRKVPYVQDEIHIDEILEEAAKEQAIIAYTLVVKKLRNYLEE 78
Query: 76 LDKE---RRADFLNMLKGFVVNQVG 97
K+ R D L L + +Q G
Sbjct: 79 KAKDYGLRTVDILGPLIKMLADQTG 103
>sp|Q91YJ2|SNX4_MOUSE Sorting nexin-4 OS=Mus musculus GN=Snx4 PE=2 SV=1
Length = 450
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 17 TMRAEKLEAASSKIFGGDKSRIR--KIEELKETIRVTEDA-KSVAINEYERIKENNRTEL 73
T+R L+ ++K+FG + R +I+ L+E I E KS + E +K N ++
Sbjct: 349 TVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVK-NAWADI 407
Query: 74 ERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111
ER +++ D L + V Q+ +K VW E
Sbjct: 408 ERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 445
>sp|O95219|SNX4_HUMAN Sorting nexin-4 OS=Homo sapiens GN=SNX4 PE=1 SV=1
Length = 450
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 17 TMRAEKLEAASSKIFGGDKSRIR--KIEELKETIRVTEDA-KSVAINEYERIKENNRTEL 73
T+R L+ ++K+FG + R +I+ L+E I E KS + E +K N ++
Sbjct: 349 TVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVK-NAWADI 407
Query: 74 ERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111
ER +++ D L + V Q+ +K VW E
Sbjct: 408 ERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 445
>sp|Q5R4C2|SNX4_PONAB Sorting nexin-4 OS=Pongo abelii GN=SNX4 PE=2 SV=1
Length = 450
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 4/98 (4%)
Query: 17 TMRAEKLEAASSKIFGGDKSRIR--KIEELKETIRVTEDA-KSVAINEYERIKENNRTEL 73
T+R L+ ++K+FG + R +I+ L+E I E KS + E +K N ++
Sbjct: 349 TVRTFSLKGMTTKLFGQETPEQREARIKVLEEQINEGEQQLKSKNLEGREFVK-NAWADI 407
Query: 74 ERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111
ER +++ D L + V Q+ +K VW E
Sbjct: 408 ERFKEQKNRDLKEALISYAVMQISMCKKGIQVWTNAKE 445
>sp|Q24SX2|PDRP_DESHY Putative pyruvate, phosphate dikinase regulatory protein
OS=Desulfitobacterium hafniense (strain Y51) GN=DSY3081
PE=3 SV=1
Length = 273
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 20 AEKLEAASSKIFGGDKSRIRKIEELKETIRVT----EDAKSVAINEYERIKENNRTELER 75
AE + A++ F G +++IRK+ +++ I + E AK AI Y + + R LE+
Sbjct: 19 AEYVSRAAAAQFSGIRTKIRKVPYVQDEIHIDEILEEAAKEQAIIAYTLVVKKLRNYLEK 78
Query: 76 LDKE---RRADFLNMLKGFVVNQVG 97
++ R D L L + +Q G
Sbjct: 79 KAQDYELRTVDILGPLIKMLADQTG 103
>sp|A6ZXL6|ATG20_YEAS7 Autophagy-related protein 20 OS=Saccharomyces cerevisiae (strain
YJM789) GN=ATG20 PE=3 SV=1
Length = 640
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGY 98
++IE+L E++ VTE+ V ++ +N+ +L + KER D +LK + Y
Sbjct: 569 KEIEQLSESLEVTENDLEVI----SKVIKND--QLPKFSKEREVDLSEILKHYSRYMRNY 622
Query: 99 AEKIANVWAKV 109
A + +W +V
Sbjct: 623 ARQNLEIWKEV 633
>sp|Q07528|ATG20_YEAST Autophagy-related protein 20 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=ATG20 PE=1 SV=1
Length = 640
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGY 98
++IE+L E++ VTE+ V ++ +N+ +L + KER D +LK + Y
Sbjct: 569 KEIEQLSESLEVTENDLEVI----SKVIKND--QLPKFSKEREVDLSEILKHYSRYMRNY 622
Query: 99 AEKIANVWAKV 109
A + +W +V
Sbjct: 623 ARQNLEIWKEV 633
>sp|A2BJL3|CARB_HYPBU Carbamoyl-phosphate synthase large chain OS=Hyperthermus butylicus
(strain DSM 5456 / JCM 9403) GN=carB PE=3 SV=1
Length = 1073
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 3 AVRSAFTDRSSALLT-MRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINE 61
A R F+D ALLT EK+E A I G D+ R+R+I+ L + ++ N
Sbjct: 492 AKRLGFSDEQVALLTGTTVEKVEKARRSI-GLDRPRVRQIDTLAAEWPAATNYLYMSYNA 550
Query: 62 YE 63
YE
Sbjct: 551 YE 552
>sp|B7XIA1|SYTC_ENTBH Probable threonine--tRNA ligase, cytoplasmic OS=Enterocytozoon
bieneusi (strain H348) GN=EBI_22768 PE=3 SV=1
Length = 634
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 4 VRSAFTDRSSALLTMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAK 55
+R A D + + +++E + G+K+R KIEEL E I+V+ + K
Sbjct: 577 IRKATLDGCKIICILGDKEMEKNEVNVRIGNKTRTYKIEELLEKIKVSIETK 628
>sp|P42527|MHCKA_DICDI Myosin heavy chain kinase A OS=Dictyostelium discoideum GN=mhkA
PE=1 SV=2
Length = 1146
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 38 IRKIEE-LKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADF 84
++K+EE L++ IR D +++ ER ++NR+E+E L+K+ + F
Sbjct: 371 VKKVEEKLQKKIREEIDNTKSELSKVERSVKDNRSEIEGLEKDCKNQF 418
>sp|O60749|SNX2_HUMAN Sorting nexin-2 OS=Homo sapiens GN=SNX2 PE=1 SV=2
Length = 519
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 99
KI++ K IR E ++E+I + R E+ R +KER DF ++ ++ + V
Sbjct: 442 KIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQ 501
Query: 100 EKIANVWAKVAEETSGYA 117
+++ W E A
Sbjct: 502 QQLIKYWEAFLPEAKAIA 519
>sp|Q2TBW7|SNX2_BOVIN Sorting nexin-2 OS=Bos taurus GN=SNX2 PE=2 SV=1
Length = 519
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%)
Query: 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 99
KI++ K IR E ++E+I + R E+ R +KER DF ++ ++ + V
Sbjct: 442 KIQQAKNEIREWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQ 501
Query: 100 EKIANVWAKVAEETSGYA 117
+++ W E A
Sbjct: 502 QQLIKYWEAFLPEAKAIA 519
>sp|Q9WV80|SNX1_MOUSE Sorting nexin-1 OS=Mus musculus GN=Snx1 PE=1 SV=1
Length = 522
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 61 EYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVW 106
++ERI R E+ R +KE+ DF N + ++ + +++A W
Sbjct: 466 DFERISTVVRKEVTRFEKEKSKDFKNHVMKYLETLLHSQQQLAKYW 511
>sp|P55575|Y4MP_RHISN Uncharacterized short-chain type dehydrogenase/reductase y4mP
OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1
Length = 253
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 74 ERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116
++L E RAD ++KG ++++G A +AN++ +A + S Y
Sbjct: 199 DKLSAEMRAD---IVKGIPLSRLGDARDVANIYLFLASDLSAY 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.327
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,915,547
Number of Sequences: 539616
Number of extensions: 1334309
Number of successful extensions: 6840
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 6740
Number of HSP's gapped (non-prelim): 221
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)