Query 033343
Match_columns 121
No_of_seqs 95 out of 97
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 12:44:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd07664 BAR_SNX2 The Bin/Amphi 99.9 5.3E-24 1.2E-28 166.3 15.1 111 2-114 119-234 (234)
2 cd07623 BAR_SNX1_2 The Bin/Amp 99.9 5.5E-23 1.2E-27 158.8 14.3 112 1-114 108-224 (224)
3 cd07665 BAR_SNX1 The Bin/Amphi 99.9 8.3E-23 1.8E-27 159.7 14.7 111 2-114 119-234 (234)
4 cd07627 BAR_Vps5p The Bin/Amph 99.9 4E-22 8.6E-27 153.1 15.3 111 1-111 100-215 (216)
5 PF09325 Vps5: Vps5 C terminal 99.9 1.2E-21 2.6E-26 149.5 14.8 111 2-112 121-236 (236)
6 cd07596 BAR_SNX The Bin/Amphip 99.8 1.1E-18 2.4E-23 130.2 14.1 112 1-112 102-218 (218)
7 cd07625 BAR_Vps17p The Bin/Amp 99.8 5.1E-18 1.1E-22 132.5 14.8 110 2-111 115-229 (230)
8 cd07624 BAR_SNX7_30 The Bin/Am 99.7 7.1E-16 1.5E-20 117.4 13.1 90 2-112 109-200 (200)
9 cd07666 BAR_SNX7 The Bin/Amphi 99.7 3.4E-15 7.3E-20 117.5 14.3 94 2-111 149-242 (243)
10 cd07621 BAR_SNX5_6 The Bin/Amp 99.6 3.4E-14 7.4E-19 110.3 14.9 99 2-113 120-218 (219)
11 cd07663 BAR_SNX5 The Bin/Amphi 99.6 5.1E-14 1.1E-18 109.3 15.3 99 2-113 119-217 (218)
12 cd07630 BAR_SNX_like The Bin/A 99.6 3.9E-14 8.4E-19 108.4 14.0 94 2-110 103-196 (198)
13 cd07622 BAR_SNX4 The Bin/Amphi 99.5 9.6E-14 2.1E-18 106.3 12.0 66 49-114 136-201 (201)
14 cd07662 BAR_SNX6 The Bin/Amphi 99.5 2.5E-13 5.4E-18 105.4 14.1 99 2-113 119-217 (218)
15 cd07628 BAR_Atg24p The Bin/Amp 99.5 2.1E-13 4.7E-18 102.9 12.5 61 51-111 124-184 (185)
16 cd07598 BAR_FAM92 The Bin/Amph 99.4 4.2E-12 9.2E-17 98.0 14.2 73 47-119 136-208 (211)
17 KOG2273 Membrane coat complex 99.3 2E-11 4.3E-16 103.4 13.4 115 2-116 373-502 (503)
18 cd07629 BAR_Atg20p The Bin/Amp 99.3 3E-11 6.6E-16 91.5 11.6 75 37-111 111-186 (187)
19 cd07667 BAR_SNX30 The Bin/Amph 99.2 2.9E-10 6.2E-15 89.5 14.0 64 48-111 176-239 (240)
20 cd07626 BAR_SNX9_like The Bin/ 98.9 4.2E-08 9.1E-13 75.3 12.8 88 3-111 109-197 (199)
21 cd07597 BAR_SNX8 The Bin/Amphi 98.9 6.6E-08 1.4E-12 75.9 12.3 111 2-113 130-246 (246)
22 cd07307 BAR The Bin/Amphiphysi 98.6 2.5E-06 5.3E-11 61.1 12.1 66 46-111 128-193 (194)
23 COG5391 Phox homology (PX) dom 98.4 7.5E-06 1.6E-10 70.8 12.7 88 28-115 436-523 (524)
24 PF10456 BAR_3_WASP_bdg: WASP- 98.3 8.9E-06 1.9E-10 64.0 9.5 62 52-113 175-236 (237)
25 smart00721 BAR BAR domain. 98.2 7.6E-05 1.6E-09 56.5 13.4 102 3-114 135-238 (239)
26 PF03114 BAR: BAR domain; Int 98.1 0.00012 2.6E-09 54.1 13.1 63 52-114 167-229 (229)
27 cd07669 BAR_SNX33 The Bin/Amph 97.5 0.0022 4.9E-08 49.7 11.3 75 37-111 128-205 (207)
28 cd07668 BAR_SNX9 The Bin/Amphi 97.5 0.0024 5.1E-08 49.7 11.1 75 38-112 129-206 (210)
29 PF06730 FAM92: FAM92 protein; 97.5 0.0072 1.6E-07 47.3 13.6 71 48-118 144-214 (219)
30 cd07590 BAR_Bin3 The Bin/Amphi 97.4 0.0073 1.6E-07 47.3 12.9 106 2-116 108-215 (225)
31 cd07670 BAR_SNX18 The Bin/Amph 97.3 0.0052 1.1E-07 47.7 11.1 58 53-110 147-204 (207)
32 cd07611 BAR_Amphiphysin_I_II T 97.0 0.063 1.4E-06 41.8 14.5 104 2-116 104-209 (211)
33 cd07588 BAR_Amphiphysin The Bi 97.0 0.067 1.5E-06 41.5 14.5 104 2-116 104-209 (211)
34 cd07612 BAR_Bin2 The Bin/Amphi 97.0 0.045 9.8E-07 42.6 13.2 103 2-115 104-208 (211)
35 cd07618 BAR_Rich1 The Bin/Amph 97.0 0.0081 1.8E-07 47.7 9.2 72 38-117 159-230 (246)
36 cd07603 BAR_ACAPs The Bin/Amph 96.7 0.036 7.8E-07 42.5 10.8 84 21-111 115-198 (200)
37 KOG3771 Amphiphysin [Intracell 96.6 0.048 1E-06 46.8 12.0 69 51-119 162-230 (460)
38 cd07591 BAR_Rvs161p The Bin/Am 96.5 0.23 4.9E-06 38.7 14.2 103 2-115 109-213 (224)
39 cd07595 BAR_RhoGAP_Rich-like T 96.4 0.031 6.8E-07 44.1 9.0 71 38-116 157-227 (244)
40 cd07599 BAR_Rvs167p The Bin/Am 96.3 0.33 7.2E-06 36.9 13.8 96 2-105 110-208 (216)
41 KOG1660 Sorting nexin SNX6/TFA 96.0 0.22 4.8E-06 41.7 12.4 77 39-115 322-398 (399)
42 cd07620 BAR_SH3BP1 The Bin/Amp 95.9 0.082 1.8E-06 42.3 8.9 71 37-115 169-239 (257)
43 cd07592 BAR_Endophilin_A The B 95.6 0.13 2.8E-06 40.2 9.0 64 51-115 155-218 (223)
44 cd07589 BAR_DNMBP The Bin/Amph 95.2 0.49 1.1E-05 35.9 10.7 57 48-104 128-184 (195)
45 cd07619 BAR_Rich2 The Bin/Amph 95.1 0.28 6.1E-06 39.0 9.4 70 39-117 162-232 (248)
46 cd07613 BAR_Endophilin_A1 The 94.8 0.27 5.9E-06 38.5 8.6 63 52-115 156-218 (223)
47 cd07593 BAR_MUG137_fungi The B 94.7 0.34 7.4E-06 37.7 8.9 67 49-116 145-211 (215)
48 cd07637 BAR_ACAP3 The Bin/Amph 94.6 0.63 1.4E-05 35.8 10.0 66 46-111 133-198 (200)
49 cd07600 BAR_Gvp36 The Bin/Amph 94.5 0.37 8.1E-06 38.1 8.9 60 51-112 182-241 (242)
50 cd07639 BAR_ACAP1 The Bin/Amph 94.5 1.7 3.6E-05 33.6 12.5 65 47-111 134-198 (200)
51 cd07615 BAR_Endophilin_A3 The 94.2 0.54 1.2E-05 36.9 9.0 63 52-115 156-218 (223)
52 cd07606 BAR_SFC_plant The Bin/ 93.6 2.6 5.6E-05 32.5 13.0 64 48-111 138-201 (202)
53 cd07635 BAR_GRAF2 The Bin/Amph 93.4 1.3 2.7E-05 34.5 9.8 66 46-111 140-205 (207)
54 cd07602 BAR_RhoGAP_OPHN1-like 93.2 1.6 3.4E-05 33.9 9.9 66 46-111 140-205 (207)
55 cd07634 BAR_GAP10-like The Bin 93.1 1.5 3.2E-05 34.1 9.7 66 46-111 140-205 (207)
56 cd07636 BAR_GRAF The Bin/Amphi 93.0 1.9 4E-05 33.6 10.1 65 47-111 141-205 (207)
57 cd07594 BAR_Endophilin_B The B 92.9 1.1 2.3E-05 35.3 8.8 63 50-113 167-229 (229)
58 cd07638 BAR_ACAP2 The Bin/Amph 92.6 3.8 8.2E-05 31.6 13.8 84 21-111 115-198 (200)
59 cd07604 BAR_ASAPs The Bin/Amph 92.1 3.1 6.7E-05 32.3 10.3 65 49-113 148-212 (215)
60 cd07616 BAR_Endophilin_B1 The 92.0 1.5 3.3E-05 34.5 8.5 60 52-112 169-228 (229)
61 cd07614 BAR_Endophilin_A2 The 91.8 1.8 4E-05 33.9 8.8 60 54-114 158-217 (223)
62 PRK14155 heat shock protein Gr 91.6 1.8 4E-05 33.5 8.5 53 38-90 19-71 (208)
63 PRK14151 heat shock protein Gr 90.9 2.6 5.6E-05 31.8 8.6 52 39-90 27-78 (176)
64 PRK14157 heat shock protein Gr 90.6 2.6 5.5E-05 33.3 8.6 54 37-90 82-135 (227)
65 cd07648 F-BAR_FCHO The F-BAR ( 90.6 6.8 0.00015 30.6 11.0 77 39-115 157-233 (261)
66 PRK14149 heat shock protein Gr 90.6 2.7 5.8E-05 32.3 8.5 56 35-90 39-94 (191)
67 PRK14140 heat shock protein Gr 90.4 4.4 9.4E-05 31.1 9.5 54 39-92 44-97 (191)
68 PRK14147 heat shock protein Gr 90.3 3.2 7E-05 31.2 8.6 53 38-90 24-76 (172)
69 PRK14141 heat shock protein Gr 90.3 3 6.4E-05 32.5 8.6 53 37-89 36-88 (209)
70 PRK14161 heat shock protein Gr 90.3 3.2 6.9E-05 31.4 8.6 54 38-91 25-78 (178)
71 KOG3725 SH3 domain protein SH3 90.1 4.5 9.8E-05 33.1 9.7 69 47-116 197-265 (375)
72 cd07640 BAR_ASAP3 The Bin/Amph 89.9 4.6 0.0001 31.6 9.3 68 47-114 144-211 (213)
73 PRK14163 heat shock protein Gr 89.6 4.5 9.7E-05 31.6 9.1 54 39-92 47-100 (214)
74 cd07633 BAR_OPHN1 The Bin/Amph 89.5 6.3 0.00014 30.7 9.8 66 46-111 140-205 (207)
75 PRK14139 heat shock protein Gr 89.4 4 8.7E-05 31.1 8.6 53 39-91 39-91 (185)
76 PRK14154 heat shock protein Gr 89.4 3.9 8.5E-05 31.8 8.6 50 39-88 59-108 (208)
77 PRK14158 heat shock protein Gr 89.3 5.4 0.00012 30.6 9.3 52 39-90 47-98 (194)
78 PRK14156 heat shock protein Gr 89.1 4.3 9.4E-05 30.8 8.5 52 38-89 33-84 (177)
79 PRK14159 heat shock protein Gr 88.6 5 0.00011 30.4 8.5 54 35-88 26-79 (176)
80 PRK14144 heat shock protein Gr 88.4 6.3 0.00014 30.5 9.1 55 39-93 52-106 (199)
81 PRK14143 heat shock protein Gr 88.0 5.3 0.00011 31.6 8.6 52 39-90 74-125 (238)
82 PRK14153 heat shock protein Gr 87.9 5.4 0.00012 30.7 8.5 53 38-90 39-91 (194)
83 PRK14148 heat shock protein Gr 87.6 7.8 0.00017 29.8 9.2 53 39-91 47-99 (195)
84 PRK14146 heat shock protein Gr 87.2 6.3 0.00014 30.7 8.6 52 39-90 61-112 (215)
85 PRK14145 heat shock protein Gr 87.0 7 0.00015 30.1 8.6 56 39-94 52-107 (196)
86 cd07642 BAR_ASAP2 The Bin/Amph 86.5 11 0.00024 29.5 9.5 63 52-114 151-213 (215)
87 COG0576 GrpE Molecular chapero 86.3 10 0.00022 28.9 9.2 53 39-91 43-95 (193)
88 cd00011 BAR_Arfaptin_like The 86.2 14 0.0003 28.7 11.0 63 47-109 138-200 (203)
89 cd07660 BAR_Arfaptin The Bin/A 85.8 15 0.00032 28.5 9.9 64 48-111 136-199 (201)
90 PRK14162 heat shock protein Gr 85.6 12 0.00025 28.8 9.2 50 39-88 46-95 (194)
91 PRK14160 heat shock protein Gr 85.6 8.7 0.00019 29.9 8.6 52 39-90 68-119 (211)
92 cd07601 BAR_APPL The Bin/Amphi 84.9 16 0.00036 28.4 13.5 66 49-114 142-208 (215)
93 cd07617 BAR_Endophilin_B2 The 84.8 13 0.00029 29.1 9.3 60 53-113 161-220 (220)
94 cd07661 BAR_ICA69 The Bin/Amph 84.7 17 0.00037 28.3 11.9 63 48-117 139-201 (204)
95 cd07641 BAR_ASAP1 The Bin/Amph 84.4 13 0.00029 29.1 9.1 65 50-114 149-213 (215)
96 PF10455 BAR_2: Bin/amphiphysi 84.3 9.1 0.0002 31.2 8.5 62 51-114 227-288 (289)
97 PRK14164 heat shock protein Gr 84.3 12 0.00026 29.3 8.8 53 38-90 76-128 (218)
98 PF01025 GrpE: GrpE; InterPro 80.7 11 0.00025 27.1 7.1 54 39-92 18-71 (165)
99 cd07632 BAR_APPL2 The Bin/Amph 76.2 36 0.00077 26.8 10.8 84 21-111 119-208 (215)
100 cd07631 BAR_APPL1 The Bin/Amph 74.5 40 0.00086 26.5 10.4 54 51-104 144-197 (215)
101 PRK14142 heat shock protein Gr 73.5 26 0.00056 27.6 7.7 51 40-90 41-91 (223)
102 PF05377 FlaC_arch: Flagella a 70.7 12 0.00026 23.3 4.2 30 40-69 1-30 (55)
103 cd07653 F-BAR_CIP4-like The F- 69.4 49 0.0011 25.3 14.6 71 39-109 161-246 (251)
104 cd07673 F-BAR_FCHO2 The F-BAR 67.3 61 0.0013 25.7 11.1 71 40-110 165-235 (269)
105 cd07649 F-BAR_GAS7 The F-BAR ( 65.8 62 0.0014 25.2 9.3 60 40-99 162-221 (233)
106 PRK14150 heat shock protein Gr 64.3 62 0.0013 24.7 9.3 52 39-90 41-96 (193)
107 PF13805 Pil1: Eisosome compon 64.0 77 0.0017 25.7 10.7 87 7-101 132-220 (271)
108 PF07295 DUF1451: Protein of u 63.9 55 0.0012 24.0 8.7 51 43-93 8-58 (146)
109 TIGR03545 conserved hypothetic 61.6 33 0.00071 30.4 6.7 61 36-96 216-276 (555)
110 PF07139 DUF1387: Protein of u 61.2 93 0.002 25.7 9.6 99 5-120 195-299 (302)
111 PRK10325 heat shock protein Gr 61.2 72 0.0016 24.4 9.1 52 38-89 41-96 (197)
112 PF14523 Syntaxin_2: Syntaxin- 60.6 45 0.00097 21.8 10.1 65 39-103 33-99 (102)
113 PF01025 GrpE: GrpE; InterPro 60.5 33 0.00072 24.6 5.7 71 38-108 10-80 (165)
114 KOG1772 Vacuolar H+-ATPase V1 59.6 59 0.0013 22.9 9.9 41 62-102 33-73 (108)
115 PRK13729 conjugal transfer pil 59.4 66 0.0014 28.2 8.0 41 39-79 76-119 (475)
116 PF15079 DUF4546: Domain of un 57.3 75 0.0016 24.4 7.1 43 34-76 42-84 (205)
117 cd07655 F-BAR_PACSIN The F-BAR 56.4 95 0.0021 24.3 13.4 57 38-94 167-237 (258)
118 KOG4796 RNA polymerase II elon 54.8 51 0.0011 29.4 6.7 68 40-107 523-602 (604)
119 PF11083 Streptin-Immun: Lanti 52.5 49 0.0011 23.0 5.1 44 37-80 50-93 (99)
120 PF10168 Nup88: Nuclear pore c 52.2 1.9E+02 0.0041 26.5 12.9 35 68-104 636-670 (717)
121 PRK14158 heat shock protein Gr 50.7 1.1E+02 0.0024 23.4 11.1 71 34-104 35-105 (194)
122 cd07676 F-BAR_FBP17 The F-BAR 50.7 1.2E+02 0.0027 23.8 11.8 68 40-107 164-246 (253)
123 PF04728 LPP: Lipoprotein leuc 50.2 61 0.0013 20.2 6.4 32 39-70 17-48 (56)
124 PF06120 Phage_HK97_TLTM: Tail 48.8 1.3E+02 0.0027 24.8 7.7 32 39-70 74-105 (301)
125 PF10224 DUF2205: Predicted co 48.0 80 0.0017 20.9 7.3 45 39-99 23-67 (80)
126 cd07647 F-BAR_PSTPIP The F-BAR 47.6 1.3E+02 0.0028 23.2 10.1 41 55-95 183-223 (239)
127 PF04011 LemA: LemA family; I 47.0 82 0.0018 23.2 6.0 38 39-76 118-155 (186)
128 PF11471 Sugarporin_N: Maltopo 45.7 60 0.0013 20.3 4.3 31 34-64 27-57 (60)
129 PRK15396 murein lipoprotein; P 45.2 88 0.0019 20.6 5.5 31 39-69 39-69 (78)
130 cd00890 Prefoldin Prefoldin is 44.8 91 0.002 21.0 5.6 32 39-70 94-125 (129)
131 cd07657 F-BAR_Fes_Fer The F-BA 44.7 1.5E+02 0.0032 23.1 9.4 54 40-93 162-230 (237)
132 PRK11546 zraP zinc resistance 43.0 1.3E+02 0.0029 22.0 7.3 58 2-63 53-113 (143)
133 PRK09973 putative outer membra 41.7 99 0.0021 20.8 5.1 31 39-69 38-68 (85)
134 cd00446 GrpE GrpE is the adeni 41.0 1.3E+02 0.0027 21.2 7.1 46 50-95 3-48 (137)
135 KOG1962 B-cell receptor-associ 40.1 55 0.0012 25.7 4.2 28 39-66 172-199 (216)
136 PF06456 Arfaptin: Arfaptin-li 39.4 1.8E+02 0.004 22.6 14.9 58 47-104 170-227 (229)
137 KOG3651 Protein kinase C, alph 39.1 2.3E+02 0.0051 23.9 7.9 54 55-108 286-339 (429)
138 PHA01816 hypothetical protein 38.2 22 0.00048 25.8 1.6 42 69-110 4-54 (160)
139 cd00584 Prefoldin_alpha Prefol 38.1 1.3E+02 0.0029 20.6 5.6 32 38-69 93-124 (129)
140 PRK01203 prefoldin subunit alp 37.8 1.5E+02 0.0032 21.4 5.9 36 35-70 83-118 (130)
141 PF15035 Rootletin: Ciliary ro 36.8 1.8E+02 0.004 21.9 8.7 22 87-111 131-152 (182)
142 cd00632 Prefoldin_beta Prefold 36.1 1.3E+02 0.0029 20.1 5.6 40 28-67 49-91 (105)
143 TIGR03824 FlgM_jcvi flagellar 36.0 49 0.0011 22.0 3.0 31 23-53 50-80 (95)
144 KOG3891 Secretory vesicle-asso 35.7 2.8E+02 0.0061 23.7 12.2 70 48-117 187-256 (436)
145 cd07659 BAR_PICK1 The Bin/Amph 35.6 2.2E+02 0.0048 22.4 9.9 66 40-105 141-206 (215)
146 PF05276 SH3BP5: SH3 domain-bi 34.9 1.1E+02 0.0023 24.3 5.2 32 38-69 183-221 (239)
147 cd07651 F-BAR_PombeCdc15_like 34.8 2.1E+02 0.0045 21.8 13.2 55 40-94 158-219 (236)
148 COG5613 Uncharacterized conser 34.0 3E+02 0.0065 23.5 8.1 60 37-96 328-393 (400)
149 cd07674 F-BAR_FCHO1 The F-BAR 33.9 2.3E+02 0.005 22.1 14.9 56 39-94 157-212 (261)
150 TIGR02338 gimC_beta prefoldin, 33.6 1.5E+02 0.0033 20.0 5.6 33 39-71 74-106 (110)
151 PF04782 DUF632: Protein of un 32.8 2.8E+02 0.006 22.8 9.9 62 37-112 127-188 (312)
152 PF06730 FAM92: FAM92 protein; 32.8 2.2E+02 0.0049 22.3 6.6 42 46-87 86-127 (219)
153 PF04316 FlgM: Anti-sigma-28 f 31.4 37 0.00081 20.5 1.7 29 28-56 17-45 (57)
154 PRK10884 SH3 domain-containing 31.0 2.5E+02 0.0053 21.6 6.6 33 39-71 93-125 (206)
155 cd07658 F-BAR_NOSTRIN The F-BA 30.8 2.5E+02 0.0055 21.7 8.4 45 41-89 173-217 (239)
156 KOG4848 Extracellular matrix-a 30.8 2.6E+02 0.0057 21.9 8.5 41 71-112 125-165 (225)
157 KOG0995 Centromere-associated 30.8 4E+02 0.0087 24.0 11.8 55 34-88 289-349 (581)
158 PRK10803 tol-pal system protei 30.5 2.3E+02 0.0049 22.4 6.4 36 38-73 60-95 (263)
159 PF06005 DUF904: Protein of un 30.2 1.5E+02 0.0033 19.0 7.2 10 71-80 46-55 (72)
160 KOG0977 Nuclear envelope prote 30.1 2.4E+02 0.0051 25.2 7.0 54 50-103 246-299 (546)
161 PRK14143 heat shock protein Gr 29.4 2.9E+02 0.0062 21.8 11.0 58 36-97 64-125 (238)
162 COG2956 Predicted N-acetylgluc 29.2 2E+02 0.0044 24.4 6.1 74 43-116 149-247 (389)
163 COG1382 GimC Prefoldin, chaper 29.2 2.2E+02 0.0047 20.3 5.9 30 40-69 78-107 (119)
164 PRK14154 heat shock protein Gr 29.1 2.8E+02 0.006 21.6 10.3 67 39-105 52-118 (208)
165 PF10186 Atg14: UV radiation r 29.0 2.6E+02 0.0057 21.3 15.8 75 36-112 67-141 (302)
166 PF09006 Surfac_D-trimer: Lung 28.9 1.4E+02 0.0029 18.0 5.2 28 41-68 1-28 (46)
167 PF07352 Phage_Mu_Gam: Bacteri 28.8 2.2E+02 0.0047 20.3 8.0 53 39-95 10-62 (149)
168 PRK14155 heat shock protein Gr 28.7 2.8E+02 0.006 21.5 9.8 67 39-105 13-79 (208)
169 cd07680 F-BAR_PACSIN1 The F-BA 28.7 3E+02 0.0065 21.9 10.8 55 38-92 167-235 (258)
170 PF00038 Filament: Intermediat 28.0 3E+02 0.0064 21.6 9.5 45 50-94 166-210 (312)
171 cd07675 F-BAR_FNBP1L The F-BAR 27.9 3.1E+02 0.0068 21.8 11.7 64 42-105 165-243 (252)
172 PTZ00491 major vault protein; 27.7 5.3E+02 0.011 24.4 12.4 63 22-84 703-765 (850)
173 PRK14011 prefoldin subunit alp 27.6 2.4E+02 0.0053 20.5 7.0 39 38-76 94-132 (144)
174 cd07643 I-BAR_IMD_MIM Inverse 27.1 1.9E+02 0.0042 22.9 5.4 34 41-74 99-132 (231)
175 PF07798 DUF1640: Protein of u 26.2 2.7E+02 0.0058 20.5 13.8 49 37-85 64-112 (177)
176 KOG2077 JNK/SAPK-associated pr 25.7 3.1E+02 0.0068 25.1 6.9 79 38-116 356-456 (832)
177 PF01166 TSC22: TSC-22/dip/bun 25.6 1.8E+02 0.0039 18.3 4.8 30 39-68 14-43 (59)
178 COG4238 Murein lipoprotein [Ce 25.6 2.1E+02 0.0045 19.0 4.9 28 39-66 39-66 (78)
179 PF04508 Pox_A_type_inc: Viral 25.5 1.1E+02 0.0024 15.7 2.9 19 41-59 3-21 (23)
180 COG2317 Zn-dependent carboxype 25.4 4.5E+02 0.0098 23.2 7.7 63 48-110 76-150 (497)
181 PRK09039 hypothetical protein; 25.4 2.9E+02 0.0063 22.7 6.4 25 91-115 228-252 (343)
182 TIGR01069 mutS2 MutS2 family p 25.3 5.4E+02 0.012 23.7 10.4 82 10-91 500-588 (771)
183 PF10481 CENP-F_N: Cenp-F N-te 24.6 4E+02 0.0087 22.0 9.6 88 20-107 20-115 (307)
184 PF11262 Tho2: Transcription f 24.5 3.7E+02 0.0081 21.6 7.4 58 20-77 33-91 (298)
185 PF02996 Prefoldin: Prefoldin 24.3 2.2E+02 0.0049 18.9 5.1 31 39-69 84-114 (120)
186 PF04880 NUDE_C: NUDE protein, 24.2 1.9E+02 0.0042 21.7 4.8 21 66-87 26-46 (166)
187 TIGR02894 DNA_bind_RsfA transc 24.1 2.8E+02 0.006 20.9 5.5 28 40-67 119-146 (161)
188 PRK14163 heat shock protein Gr 23.2 3.7E+02 0.0079 21.0 10.4 62 41-102 42-103 (214)
189 PF06698 DUF1192: Protein of u 23.2 1.7E+02 0.0037 18.3 3.6 20 39-58 28-47 (59)
190 PF01496 V_ATPase_I: V-type AT 23.2 4.3E+02 0.0093 23.9 7.6 42 35-76 225-266 (759)
191 PF00430 ATP-synt_B: ATP synth 23.2 2.4E+02 0.0052 18.9 10.3 36 37-72 31-66 (132)
192 PF12107 VEK-30: Plasminogen ( 22.4 81 0.0017 15.0 1.5 12 71-82 3-14 (17)
193 PRK14162 heat shock protein Gr 22.2 3.6E+02 0.0079 20.6 10.6 63 37-99 37-99 (194)
194 KOG0994 Extracellular matrix g 21.9 4.7E+02 0.01 26.3 7.6 43 20-62 1691-1733(1758)
195 TIGR00293 prefoldin, archaeal 21.9 2.7E+02 0.0058 18.9 5.3 31 37-67 84-114 (126)
196 PRK00106 hypothetical protein; 21.7 5.7E+02 0.012 22.7 9.6 59 36-94 122-180 (535)
197 PF04568 IATP: Mitochondrial A 21.7 2.8E+02 0.0061 19.1 7.5 13 6-18 52-64 (100)
198 PF11285 DUF3086: Protein of u 21.6 4.5E+02 0.0098 21.5 7.4 58 40-101 12-69 (283)
199 PF13094 CENP-Q: CENP-Q, a CEN 21.5 3.1E+02 0.0068 19.6 6.4 38 40-77 42-79 (160)
200 KOG0250 DNA repair protein RAD 21.4 4.1E+02 0.009 25.8 7.2 47 35-81 751-797 (1074)
201 PF09304 Cortex-I_coil: Cortex 21.4 3E+02 0.0065 19.3 8.1 43 20-62 39-81 (107)
202 smart00338 BRLZ basic region l 21.1 2.1E+02 0.0045 17.3 5.1 26 40-65 34-59 (65)
203 PF04799 Fzo_mitofusin: fzo-li 21.0 3.4E+02 0.0073 20.5 5.5 37 42-78 105-141 (171)
204 PRK09343 prefoldin subunit bet 20.9 3E+02 0.0065 19.1 5.7 33 39-71 78-110 (121)
205 PRK00888 ftsB cell division pr 20.9 2.8E+02 0.0062 18.9 5.7 35 40-78 28-62 (105)
206 KOG2856 Adaptor protein PACSIN 20.9 5.3E+02 0.011 22.4 7.1 52 39-90 184-242 (472)
207 PRK03947 prefoldin subunit alp 20.8 3E+02 0.0065 19.1 6.3 32 39-70 101-132 (140)
208 PF14916 CCDC92: Coiled-coil d 20.8 2.3E+02 0.005 17.8 5.2 35 45-79 2-36 (60)
209 PRK13455 F0F1 ATP synthase sub 20.7 3.5E+02 0.0076 19.8 13.3 39 55-93 114-152 (184)
210 PRK14139 heat shock protein Gr 20.6 3.9E+02 0.0084 20.3 10.5 65 38-102 31-95 (185)
211 PRK14474 F0F1 ATP synthase sub 20.5 4.2E+02 0.0092 20.7 14.3 79 4-85 30-111 (250)
212 PF11853 DUF3373: Protein of u 20.5 97 0.0021 27.2 2.8 27 35-61 27-53 (489)
213 PF05377 FlaC_arch: Flagella a 20.3 2.3E+02 0.005 17.5 5.5 31 39-69 7-37 (55)
214 PF08725 Integrin_b_cyt: Integ 20.3 48 0.001 19.7 0.7 13 70-82 9-21 (47)
215 TIGR03166 alt_F1F0_F1_eps alte 20.2 2.8E+02 0.0062 19.4 4.7 34 46-79 84-117 (122)
216 PF08172 CASP_C: CASP C termin 20.2 4.1E+02 0.0088 21.0 6.1 36 39-74 93-128 (248)
217 PF05276 SH3BP5: SH3 domain-bi 20.1 3.8E+02 0.0081 21.2 5.8 36 39-74 14-49 (239)
No 1
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=99.92 E-value=5.3e-24 Score=166.27 Aligned_cols=111 Identities=22% Similarity=0.356 Sum_probs=103.4
Q ss_pred hhHHHHHHhHHHHHHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
.|||.+|.+|.+++.+| .+.+...+.+|+.|+. |++|+.+++.+|.+++.++++|+++|++|+++++.||.||
T Consensus 119 ~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~~--k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rF 196 (234)
T cd07664 119 AAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYAN--KPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRF 196 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999 3677777778886543 6899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 77 DKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 77 ~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
+++|..||+++|+.|+.+|+.++++++++|++|.|++.
T Consensus 197 e~er~~dfk~~l~~fles~ie~qke~ie~We~f~p~~~ 234 (234)
T cd07664 197 EKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAK 234 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Confidence 99999999999999999999999999999999999863
No 2
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=99.90 E-value=5.5e-23 Score=158.82 Aligned_cols=112 Identities=20% Similarity=0.359 Sum_probs=101.6
Q ss_pred ChhHHHHHHhHHHHHHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 1 MLAVRSAFTDRSSALLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELER 75 (121)
Q Consensus 1 m~aVk~a~~dR~~al~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieR 75 (121)
+.|||.+|++|.+++++| .+.++.....|+-+. +|++|+.+++.+|.+++.+++.|+++|+.|+++++.||.|
T Consensus 108 i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~--~~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~r 185 (224)
T cd07623 108 IGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELS--GRTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIER 185 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 245555555666543 3779999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 76 LDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 76 F~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
|+.+|..||+.+|+.|+..|+.++++++++|++|.|++.
T Consensus 186 F~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~~pe~~ 224 (224)
T cd07623 186 FEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAFLPEAK 224 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 999999999999999999999999999999999999873
No 3
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=99.90 E-value=8.3e-23 Score=159.67 Aligned_cols=111 Identities=23% Similarity=0.356 Sum_probs=103.1
Q ss_pred hhHHHHHHhHHHHHHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
.|||.+|.+|.+++++| .+.++..+..|+.++ +|++|+.+++.+|.+++.++++++++|++|++.++.||.||
T Consensus 119 ~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~--~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rF 196 (234)
T cd07665 119 SAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWA--NKPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRF 196 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999 257777777888543 36899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 77 DKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 77 ~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
+.+|..||+++++.|+..|+.++++++.+|++|.|++.
T Consensus 197 e~er~~Dfk~~v~~fles~ie~qke~ie~We~flp~~~ 234 (234)
T cd07665 197 EKEKSKDFKNHIIKYLETLLHSQQQLVKYWEAFLPEAK 234 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 99999999999999999999999999999999999863
No 4
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=99.89 E-value=4e-22 Score=153.09 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=105.0
Q ss_pred ChhHHHHHHhHHHHHHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 1 MLAVRSAFTDRSSALLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELER 75 (121)
Q Consensus 1 m~aVk~a~~dR~~al~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieR 75 (121)
+.|||.+|.+|.+++++| .+.++.....|+.|++.++++|+..++.+|.+++.+++.|+++|+.|++.++.||.|
T Consensus 100 ~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~~~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~r 179 (216)
T cd07627 100 IGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQGKTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELER 179 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999 367788888999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 76 LDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 76 F~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
|+.+|..||+++|..|+..|+.++++++++|++|..
T Consensus 180 F~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f~~ 215 (216)
T cd07627 180 FERERVEDFRNSVEIYLESAIESQKELIELWETFYQ 215 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999863
No 5
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=99.88 E-value=1.2e-21 Score=149.46 Aligned_cols=111 Identities=31% Similarity=0.490 Sum_probs=105.5
Q ss_pred hhHHHHHHhHHHHHHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
.|||.+|.+|.+++.+| .+.+......|+-+++.++++|+..++.+|.+++..++.++++|+.|+++++.|++||
T Consensus 121 ~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf 200 (236)
T PF09325_consen 121 ESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERF 200 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999 3567777778999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 77 DKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 77 ~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
+.+|..||+.||.+|+..|+.++++++++|++++|+
T Consensus 201 ~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 201 EKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 999999999999999999999999999999999985
No 6
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.81 E-value=1.1e-18 Score=130.24 Aligned_cols=112 Identities=37% Similarity=0.490 Sum_probs=104.8
Q ss_pred ChhHHHHHHhHHHHHHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 1 MLAVRSAFTDRSSALLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELER 75 (121)
Q Consensus 1 m~aVk~a~~dR~~al~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieR 75 (121)
+.||+.+|..|..++..+ .+.++.....|+-+++.+|+.|+..++.+|..++.+++.+..+|+.|+..+..|+.|
T Consensus 102 ~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~ 181 (218)
T cd07596 102 CQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKR 181 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999 356777777888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 76 LDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 76 F~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
|+.+|..||+.+|.+|+..|+.++++++++|+.+.|+
T Consensus 182 f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~~ 218 (218)
T cd07596 182 FHEERARDLKAALKEFARLQVQYAEKIAEAWESLLPE 218 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999874
No 7
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.79 E-value=5.1e-18 Score=132.45 Aligned_cols=110 Identities=13% Similarity=0.200 Sum_probs=103.7
Q ss_pred hhHHHHHHhHHHHHHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
.+||.+|++|..+++.| ...++..+..|+.|.+..+++|++++..++++++...+.++..|++|+.+|+.|+.||
T Consensus 115 ~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf 194 (230)
T cd07625 115 YVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKRDINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEW 194 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999 3566667779999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 77 DKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 77 ~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
+.++..||+.+|++|+..|+.+..+.+.+|++|-|
T Consensus 195 ~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~~r~ 229 (230)
T cd07625 195 TDWTEEDLQSAIREYTLRKIEYERKKLSLLERIRL 229 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999865
No 8
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.69 E-value=7.1e-16 Score=117.41 Aligned_cols=90 Identities=20% Similarity=0.310 Sum_probs=77.3
Q ss_pred hhHHHHHHhHHHHHHHHH--HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTMR--AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~--~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
.|||.+|..|......|. .+.|..+. .+ ++..++.|+..|+.|++.++.||+||+.+
T Consensus 109 ~svk~~l~~R~~~q~~~e~~~e~L~~k~--------------~~-------l~~ev~~a~~~~e~~~~~~~~E~~rF~~~ 167 (200)
T cd07624 109 DAVKDVLKRRDQFQIEYELSVEELNKKR--------------LE-------LLKEVEKLQDKLECANADLKADLERWKQN 167 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999888882 34444311 11 56667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
|..||+.+|++|+..|+.++++++++|+++.|.
T Consensus 168 K~~d~k~~l~~~a~~qi~~~~~~~~~We~~~p~ 200 (200)
T cd07624 168 KRQDLKKILLDMAEKQIQYYEQCLAAWEEVLPA 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999984
No 9
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.66 E-value=3.4e-15 Score=117.49 Aligned_cols=94 Identities=17% Similarity=0.287 Sum_probs=79.5
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERR 81 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~ 81 (121)
.|||.+|..|..+=.++ ++++...++ .|.+| ++++.+|.++++++++| +..++.|++||+.+|.
T Consensus 149 ~slK~vlk~R~~~Q~~l--e~k~e~l~k------~~~dr-~~~~~ev~~~e~kve~a-------~~~~k~e~~Rf~~~k~ 212 (243)
T cd07666 149 ETLMGVIKRRDQIQAEL--DSKVEALAN------KKADR-DLLKEEIEKLEDKVECA-------NNALKADWERWKQNMQ 212 (243)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHh------hhhhH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 58999999998554444 333333333 36788 79999999999999999 5668899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 82 ADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 82 ~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
.||+.+|++|+..|+.|+++++.+|+.|+.
T Consensus 213 ~D~k~~~~~yae~~i~~~~~~~~~We~fl~ 242 (243)
T cd07666 213 TDLRSAFTDMAENNISYYEECLATWESFLH 242 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999873
No 10
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=99.61 E-value=3.4e-14 Score=110.34 Aligned_cols=99 Identities=15% Similarity=0.218 Sum_probs=82.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERR 81 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~ 81 (121)
+|||.+|.+|..+|.+|.-+.......| .| ..+|.++|.++.+|+..|+.|++.++.||.||+.+|.
T Consensus 120 ~A~K~~l~rR~ral~~~q~A~k~L~KaR------~k-------~~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv 186 (219)
T cd07621 120 QAAKDLLYRRLRCLANYENANKNLEKAR------AK-------NKDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRV 186 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH------hc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999943322221111 12 2666777778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033343 82 ADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 113 (121)
Q Consensus 82 ~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~ 113 (121)
.||+..|+.|++.|+.+++..+++|.+....+
T Consensus 187 ~~fk~~lve~aE~~ik~Ak~~~~~l~~~~~~l 218 (219)
T cd07621 187 AAFRKNLVELAELEIKHAKAQIQLLKNCLAAL 218 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999877544
No 11
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=99.60 E-value=5.1e-14 Score=109.28 Aligned_cols=99 Identities=15% Similarity=0.222 Sum_probs=84.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERR 81 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~ 81 (121)
+|||..|.+|..+|.+|.-+....... |. -..+|.++|.++.+|+++|++||+.++.||.||+.+|.
T Consensus 119 ~A~K~ll~rR~ral~~~e~A~~~L~Ka--------R~-----k~kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv 185 (218)
T cd07663 119 EAAKDLLYRRARALADYENSNKALDKA--------RL-----KSKDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRV 185 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------Hh-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999994333222111 11 15678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033343 82 ADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 113 (121)
Q Consensus 82 ~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~ 113 (121)
.||+..|+.|++.++.+++.....|.+....+
T Consensus 186 ~~Fk~~lve~~E~~ik~ak~~~~~~~~~~~~~ 217 (218)
T cd07663 186 AAFRKNLIEMTELEIKHAKNNVSLLQSCIDLF 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999877654
No 12
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.60 E-value=3.9e-14 Score=108.39 Aligned_cols=94 Identities=24% Similarity=0.331 Sum_probs=79.9
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERR 81 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~ 81 (121)
+|||.+|.+|..+|..|.-...... ..|+.|.+ .+|.+.++|+.+|++|++.++.||.||+.+|.
T Consensus 103 ~a~K~~l~~R~~~~~~~~~a~k~l~--------Kar~~k~~-------~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv 167 (198)
T cd07630 103 ESEKDMLFRRTCKLIEFENASKALE--------KAKPQKKE-------QAEEAKKKAETEFEEISSLAKKELERFHRQRV 167 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HhHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999943222221 23555553 37788889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 82 ADFLNMLKGFVVNQVGYAEKIANVWAKVA 110 (121)
Q Consensus 82 ~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~ 110 (121)
.||+..|+.|++.|+.+++..+.+|.+..
T Consensus 168 ~~fk~~l~~~~E~~i~~ak~~~~~~~~~~ 196 (198)
T cd07630 168 LELQSALVCYAESQIKNAKEAAAVLTKTL 196 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999998765
No 13
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=99.55 E-value=9.6e-14 Score=106.34 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 49 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 49 ~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
.+++.+++.|+..|+.|++.++.|++||+.+|..||+.+|.+|+..|+.++++++++|+++.+++.
T Consensus 136 ~~l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~~~~~~~ 201 (201)
T cd07622 136 QQGEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTNIKECLQ 201 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 338899999999999999999999999999999999999999999999999999999999999874
No 14
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=99.54 E-value=2.5e-13 Score=105.38 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=85.3
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTMRAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERR 81 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~ 81 (121)
.|+|..|.+|..+|.+|.-+.......|.. ..+|.++|.++.+|+++|++||+.++.||.||+..|.
T Consensus 119 ~A~Kdll~rR~r~l~~~enA~k~L~KaR~~-------------~kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv 185 (218)
T cd07662 119 QAAKDLLYRRSRSLVDYENANKALDKARAK-------------NKDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRV 185 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999994333332112221 3889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033343 82 ADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 113 (121)
Q Consensus 82 ~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~ 113 (121)
.||+..|+.|++.++.+++...+.|.+....+
T Consensus 186 ~~Fkk~Lv~y~E~~lkhak~~~~~~~~~~~~l 217 (218)
T cd07662 186 AAFRKNLVELAELELKHAKGNLQLLQSCLAVL 217 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999877543
No 15
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.53 E-value=2.1e-13 Score=102.92 Aligned_cols=61 Identities=11% Similarity=0.266 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 51 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 51 ~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
++..++.|+..|+.|++.++.|+.||++.|+.||+.+|++|+..|+.+|++++++|+++.|
T Consensus 124 l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~~~ 184 (185)
T cd07628 124 LTDEVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKVEP 184 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6668899999999999999999999999999999999999999999999999999999987
No 16
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.44 E-value=4.2e-12 Score=98.02 Aligned_cols=73 Identities=15% Similarity=0.270 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcc
Q 033343 47 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANE 119 (121)
Q Consensus 47 eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~~~ 119 (121)
.|.++|..+..|+.+|++++..+.+||.||+++|..||+.+|.+|+..|+.++.+.+.+|+.....+..|-.+
T Consensus 136 ~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~~~~~~~~~~~~ 208 (211)
T cd07598 136 IISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTAAYQDIQNIDEE 208 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 7788999999999999999999999999999999999999999999999999999999999999888887544
No 17
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2e-11 Score=103.39 Aligned_cols=115 Identities=31% Similarity=0.417 Sum_probs=88.8
Q ss_pred hhHHHHHHhHHHHHHHHH-----HHHHHHhhhcccCCchh--hHHHHHHHHHHHHHHHHHHHHHH-----HHHH--HHHH
Q 033343 2 LAVRSAFTDRSSALLTMR-----AEKLEAASSKIFGGDKS--RIRKIEELKETIRVTEDAKSVAI-----NEYE--RIKE 67 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~-----~~~le~~~skl~G~~~~--r~~Ki~~l~~eI~~~e~~~e~a~-----~eye--~i~~ 67 (121)
.+|+.+|..|.+++.+|. ...+.....++.++... +.+|....+.++..++..+.+.. ++++ .|++
T Consensus 373 ~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~ 452 (503)
T KOG2273|consen 373 ESVKSLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNRSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISE 452 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 689999999999999882 12222222333332211 45666666677777777666666 6666 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcch
Q 033343 68 NNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE-ETSGY 116 (121)
Q Consensus 68 ~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~-e~~~~ 116 (121)
+++.|++||+..|..||+.+++.|+..++.++++++++|.++.| +...|
T Consensus 453 ~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~~~~~~~~ 502 (503)
T KOG2273|consen 453 RIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFLPSLEKDI 502 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcc
Confidence 99999999999999999999999999999999999999999999 55544
No 18
>cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.32 E-value=3e-11 Score=91.46 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERI-KENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i-~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
|..|.-+.+.-.+.+-..+..+..+|+.| +..+..|+.||+++|..||+.+|++|+..|+.|+++++.+|+.+..
T Consensus 111 R~~K~~Q~e~l~~~L~e~~~~~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~~~~ 186 (187)
T cd07629 111 RKLKHVQYEMTKDSLLESALVAASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKEAKA 186 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66666666666666666666778899999 5999999999999999999999999999999999999999998863
No 19
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.25 E-value=2.9e-10 Score=89.52 Aligned_cols=64 Identities=19% Similarity=0.372 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 48 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 48 I~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
++.++..++.+++.++.|.+.+..|++||+..|+.||+.+|.+||..||.+|++++.+|+.+.|
T Consensus 176 ~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~l~ 239 (240)
T cd07667 176 RPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESIIP 239 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445555666777779999999999999999999999999999999999999999999999987
No 20
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=98.91 E-value=4.2e-08 Score=75.35 Aligned_cols=88 Identities=16% Similarity=0.279 Sum_probs=67.9
Q ss_pred hHHHHHHhHHHHHHHHHH-HHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 3 AVRSAFTDRSSALLTMRA-EKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERR 81 (121)
Q Consensus 3 aVk~a~~dR~~al~~~~~-~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~ 81 (121)
+++.+|+.|-.||..++- .++-. .+|. ....++..+++++.|+..++.||.||+.+|.
T Consensus 109 ~~pdi~~~~k~al~K~kE~~r~~~---------egk~------------~~~e~~ev~~r~d~IS~~~~aE~~~F~~eRv 167 (199)
T cd07626 109 TFPDIIGVHKGAVQKVKECERLVD---------EGKM------------SSAELEEVKRRTDVISYALLAEINHFHRERV 167 (199)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---------hccc------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777766632 22221 1111 1223444899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 82 ADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 82 ~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
.||+.++++|+..|+.++++++.-++..++
T Consensus 168 ~Dfk~~m~~yLe~qI~fyqqI~~kl~~a~~ 197 (199)
T cd07626 168 RDFKSMMRNYLQQQIEFYQKIAAKLEEALA 197 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998887665
No 21
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=98.85 E-value=6.6e-08 Score=75.87 Aligned_cols=111 Identities=17% Similarity=0.288 Sum_probs=90.7
Q ss_pred hhHHHHHHhHHHH-HHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSA-LLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELER 75 (121)
Q Consensus 2 ~aVk~a~~dR~~a-l~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieR 75 (121)
.|+|..|.+|... +.++ +++..+.+...+.|.|..+..-++.++..|...+..+.+-...+--|..-++.|+.+
T Consensus 130 ~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~ 209 (246)
T cd07597 130 VSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKPDVKGAEVDKLEASIIKDKESIANQLNRSWFIRECILEETQL 209 (246)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888999888833 4444 455555555566665556667788888999887777777777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033343 76 LDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 113 (121)
Q Consensus 76 F~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~ 113 (121)
|+.... .+..+|++|+..|+.++..+.++|+.+.|.+
T Consensus 210 fq~~~~-~~~~~l~~~~~~q~~~~~~l~~~W~~L~~~l 246 (246)
T cd07597 210 FQETQF-LLTSILQEFVKDEIQYHSELANVWERLVPKL 246 (246)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999 9999999999999999999999999998853
No 22
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=98.56 E-value=2.5e-06 Score=61.08 Aligned_cols=66 Identities=20% Similarity=0.420 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 46 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 46 ~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
..+..++..++.++..|+.+......+|..|...+..||...|.+|+..|..+++++...|..+.|
T Consensus 128 ~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~~ 193 (194)
T cd07307 128 SKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLLP 193 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 456778888888999999999999999999999999999999999999999999999999999876
No 23
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.38 E-value=7.5e-06 Score=70.82 Aligned_cols=88 Identities=25% Similarity=0.380 Sum_probs=82.4
Q ss_pred hcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 28 SKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWA 107 (121)
Q Consensus 28 skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~ 107 (121)
.|+|-++..|..++..|+.+++.+++.+..|..++..|.+.+..|+..|...++.|+..+|..|+...+.+++.+++.|.
T Consensus 436 ~~~~~~e~sr~k~~~~Lqq~~~~l~~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~Le~W~ 515 (524)
T COG5391 436 LRDFVQEKSRSKSIESLQQDKEKLEEQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWK 515 (524)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcc
Q 033343 108 KVAEETSG 115 (121)
Q Consensus 108 ~~~~e~~~ 115 (121)
.+...+.-
T Consensus 516 ~v~~~l~~ 523 (524)
T COG5391 516 SVKEQLDR 523 (524)
T ss_pred HHHHhhhc
Confidence 99988753
No 24
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=98.25 E-value=8.9e-06 Score=64.05 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033343 52 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 113 (121)
Q Consensus 52 e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~ 113 (121)
...++..+...+.|+-.++-||..|+.+|..||+.|+..|+..|+.++++++.-|+..+..+
T Consensus 175 ~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~a~~~f 236 (237)
T PF10456_consen 175 QQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQALQQF 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56677888999999999999999999999999999999999999999999999999987643
No 25
>smart00721 BAR BAR domain.
Probab=98.21 E-value=7.6e-05 Score=56.51 Aligned_cols=102 Identities=19% Similarity=0.255 Sum_probs=76.8
Q ss_pred hHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 3 AVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER 80 (121)
Q Consensus 3 aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er 80 (121)
.|+.+...|.+.++.+ ...+++....+ +..... . .+..++...+.|+..|+.+......||-.|..-+
T Consensus 135 ~~~~~~kk~~~~~lDyD~~~~kl~~~~~~--~~~~~~-------~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~ 204 (239)
T smart00721 135 EIKKARKKLERKLLDYDSARHKLKKAKKS--KEKKKD-------E-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASR 204 (239)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHh--ccCChh-------h-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666666666 23344332111 111111 1 4556667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 81 RADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 81 ~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
..-+...|.+|+..|..|+.++...+..+.|.+.
T Consensus 205 ~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 205 VDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999999999875
No 26
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=98.14 E-value=0.00012 Score=54.05 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 52 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 52 e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
+..++.|+..|+.+......+|..|..-+..-|...|.+|+..|..|++.+.+.|..+.|.+.
T Consensus 167 ~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l~ 229 (229)
T PF03114_consen 167 EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQLA 229 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 778888999999999999999999998888777799999999999999999999999999873
No 27
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=97.52 E-value=0.0022 Score=49.70 Aligned_cols=75 Identities=13% Similarity=0.241 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVT---EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~---e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
-..|+.+.+.-..+. ...++..++...-|+-.+.-||..|..+|..||+.|+.+|+.-|+.++++++.--+..++
T Consensus 128 A~~KvkE~~k~~~e~Km~~~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle~al~ 205 (207)
T cd07669 128 AFAKVKESQRMSDEGRMDQDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLEKTLR 205 (207)
T ss_pred HHHHHHHHHHhhHHhhhhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666555443322 334456888899999999999999999999999999999999999999999876655543
No 28
>cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi
Probab=97.50 E-value=0.0024 Score=49.67 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRV---TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 38 ~~Ki~~l~~eI~~---~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
..|+.+.+.-..+ ....++..++..+-|+=...-||..|..+|..||+.|+.+|+.-|+.++++++.--++.++.
T Consensus 129 ~~KvkE~~k~~~egkm~~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kl~~~l~~ 206 (210)
T cd07668 129 IEKVKESDKLVATSKITLQDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALSR 206 (210)
T ss_pred HHHHHHHHHHhhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555444332 13445567888999999999999999999999999999999999999999998877666654
No 29
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=97.47 E-value=0.0072 Score=47.28 Aligned_cols=71 Identities=14% Similarity=0.260 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Q 033343 48 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 118 (121)
Q Consensus 48 I~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~~ 118 (121)
|...+..+..|..+-.+-...+-+-|+.|+++|-.|++.+|.+|+..++.++.+.+.+|+..-..+..|..
T Consensus 144 isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~a~q~i~~id~ 214 (219)
T PF06730_consen 144 ISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTAAYQDIQNIDE 214 (219)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 34444444556666666666677778999999999999999999999999999999999988777776643
No 30
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.40 E-value=0.0073 Score=47.28 Aligned_cols=106 Identities=20% Similarity=0.262 Sum_probs=80.9
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+.|+.++..|...++-+ +..+++....|--.. . ...| +..++...+.|+..|+.+......||=.|=.-
T Consensus 108 ~~I~~~I~KR~~Kl~DYD~~r~~~~kl~~K~~k~-~-~~~K-------L~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~ 178 (225)
T cd07590 108 PSVNAAIKRREQSLQEYERLQAKVEKLAEKEKTG-P-NLAK-------LEQAEKALAAARADFEKQNIKLLEELPKFYNG 178 (225)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccCC-h-hHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56888899998888887 223333221221100 0 1244 45566667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
|..=|.-.|.+|+..|..++..+-.+-..+.+-+..-
T Consensus 179 r~~f~~p~Fqsl~~~Ql~f~~e~~k~~~~l~~~~d~~ 215 (225)
T cd07590 179 RTDYFQPCFEALIKSQVLYYSQSTKIFTQLAPNLDNP 215 (225)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999988888876553
No 31
>cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.33 E-value=0.0052 Score=47.67 Aligned_cols=58 Identities=16% Similarity=0.240 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 53 DAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVA 110 (121)
Q Consensus 53 ~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~ 110 (121)
..++...+..+-|+=...-||..|+.+|..||+.|+..|+.-|+.+++++..=-+..+
T Consensus 147 ~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~kl~~~l 204 (207)
T cd07670 147 QKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQKLEEAL 204 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678889999999999999999999999999999999999999999887555544
No 32
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=97.03 E-value=0.063 Score=41.79 Aligned_cols=104 Identities=19% Similarity=0.228 Sum_probs=80.0
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+.|+.++..|...++-+ +..+++..-.|= +.| +.| +..++..++.|+..|+.+..-...|+=.|=.-
T Consensus 104 ~~I~~~I~KR~hKllDYD~~r~~~~kL~~k~-~kD---e~K-------L~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~ 172 (211)
T cd07611 104 PDIKNRIAKRSRKLVDYDSARHHLEALQTSK-RKD---EGR-------IAKAEEEFQKAQKVFEEFNVDLQEELPSLWSR 172 (211)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-ccc---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888999999998888 223333211111 112 234 44566667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
|..=|...|..++..|..++..+.++-..+.+-+.+.
T Consensus 173 Ri~f~~psFeal~~~q~~f~~E~~k~~~~l~~~~~~l 209 (211)
T cd07611 173 RVGFYVNTFKNVSSLEAKFHKEISVLCHKLYEVMTKL 209 (211)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999888777665543
No 33
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=97.01 E-value=0.067 Score=41.47 Aligned_cols=104 Identities=22% Similarity=0.306 Sum_probs=79.8
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+.|+.++..|...++-+ +..+++....| +..-+.|+ ..++..++.|+..|+.+..-...|+=+|=.-
T Consensus 104 ~~i~k~I~KR~~KllDYDr~r~~~~kL~~K----~~kde~KL-------~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ 172 (211)
T cd07588 104 PEVKKRIAKRGRKLVDYDSARHNLEALKAK----KKVDDQKL-------TKAEEELQQAKKVYEELNTELHEELPALYDS 172 (211)
T ss_pred HHHHHHHHHHhhHHHhHHHHHHHHHHHHhc----ccccHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46788888888888877 22333321111 11112344 4467777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
|..=|...|.+++..|..++..+..+-..+...+.+.
T Consensus 173 ri~f~~p~F~sl~~~q~~F~~e~~~~~~~l~~~~~~l 209 (211)
T cd07588 173 RIAFYVDTLQSIFAAESVFHKEIGKVNTKLNDVMDGL 209 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998887766543
No 34
>cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (
Probab=96.96 E-value=0.045 Score=42.60 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=79.4
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+.|+.++..|...++-+ +...++.... .+..- +.-+..++..++.|+..|+.+..-...|+=.|=.-
T Consensus 104 ~~i~~~i~KR~~KllDYD~~R~~~~kl~~----k~~kD-------~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~ 172 (211)
T cd07612 104 PDVKERVAKRGRKLVDYDSARHHLEALQN----AKKKD-------DAKIAKAEEEFNRAQVVFEDINRELREELPILYDS 172 (211)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHh----ccccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56888888888888888 3333322111 11111 33445566677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
|..=|...|..++..|..++..+.++-..+..-+.+
T Consensus 173 Ri~f~~psFeal~~~q~~F~~E~~k~~~~l~~~~~~ 208 (211)
T cd07612 173 RIGCYVTVFQNISNLRDTFYKEMSKLNHDLYNVMKK 208 (211)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999988887766544
No 35
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=96.96 E-value=0.0081 Score=47.67 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 117 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~ 117 (121)
..|+..|++++++++..++.++..|.. ++--| -.+..+...-|..|+..|..|+++.+.+-+.+.|++++-.
T Consensus 159 ~~K~~~l~ee~e~a~~k~E~~kD~~~~-------dm~~~-l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~ 230 (246)
T cd07618 159 PSKIDMLKEEMDEAGNKVEQCKDQLAA-------DMYNF-ASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQ 230 (246)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHH-HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888888888877777766 66677 4999999999999999999999999999999999998743
No 36
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=96.71 E-value=0.036 Score=42.52 Aligned_cols=84 Identities=11% Similarity=0.171 Sum_probs=70.9
Q ss_pred HHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 21 EKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 100 (121)
Q Consensus 21 ~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~ 100 (121)
.+++.+.+|....+..|+ .++.++...+..+++.|...+=.----|.-.|.-|.-||.+.|.+|+..|..+..
T Consensus 115 ~~yd~al~k~~~~~K~K~-------~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~ 187 (200)
T cd07603 115 DDLDNALVKNAQAPRSKP-------QEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFH 187 (200)
T ss_pred HHHHHHHHHHhccCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677666665544 3566677778889999999988888899999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 033343 101 KIANVWAKVAE 111 (121)
Q Consensus 101 ~~~~~W~~~~~ 111 (121)
++-++|..+.|
T Consensus 188 qG~el~~dl~p 198 (200)
T cd07603 188 QGYDLLEDLEP 198 (200)
T ss_pred hHHHHHHhhcC
Confidence 99999998876
No 37
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.64 E-value=0.048 Score=46.78 Aligned_cols=69 Identities=13% Similarity=0.221 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcc
Q 033343 51 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANE 119 (121)
Q Consensus 51 ~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~~~ 119 (121)
++..++.|++.||.......+||=.|=.-|..-|...|.++...|..++..+.++-.++......|...
T Consensus 162 AeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl~~~L~~v~~kl~dq 230 (460)
T KOG3771|consen 162 AEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKLYKNLYDVLDKLFDQ 230 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 788888999999999999999999999999999999999999999999999999999999988877654
No 38
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=96.52 E-value=0.23 Score=38.65 Aligned_cols=103 Identities=19% Similarity=0.173 Sum_probs=75.4
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+.|+.++..|...++-+ ...+++....|- . ++ ...+..++...+.|+..|+.+.+...+||=+|-.-
T Consensus 109 ~~i~k~IkKR~~KllDYD~~~~k~~kl~~K~----~-kd------~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~ 177 (224)
T cd07591 109 PEINEAIKKRNHKLLDYDAARAKVRKLIDKP----S-ED------PTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDL 177 (224)
T ss_pred hhHHHHHHHHHhhHhhHHHHHHHHHHHHhcc----c-CC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45777788888877777 223333221111 0 11 14456677777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
|..=|-..|.+|+..|..++..+-..-..+.+-+-+
T Consensus 178 r~~~l~~~f~s~~~iQ~~~~~~~y~~l~~~~~~~~~ 213 (224)
T cd07591 178 RIPYLDPSFEAFVKIQLRFFTEGYERLAQVQRYLDA 213 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 999999999999999999887776666666555544
No 39
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=96.41 E-value=0.031 Score=44.11 Aligned_cols=71 Identities=17% Similarity=0.193 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
..|++.++.+++.++...+.++..+ -.+|--| .++..|+..-|..|+..|..|+++++.+-..+.|.+..-
T Consensus 157 ~~K~~~l~eE~e~ae~k~e~~~e~~-------~~~M~~~-l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~ 227 (244)
T cd07595 157 AAKVDALKDEYEEAELKLEQCRDAL-------ATDMYEF-LAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQ 227 (244)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666555555554 4444443 244789999999999999999999999999999998763
No 40
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=96.27 E-value=0.33 Score=36.94 Aligned_cols=96 Identities=19% Similarity=0.161 Sum_probs=69.8
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHH-hhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEA-ASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDK 78 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~-~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~ 78 (121)
+.|+.++..|...++-+ ...+++. ...+- ..+.-...|+ ..++...+.|+..|+.+......|+=.|-.
T Consensus 110 ~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~-~~~~kd~~kl-------~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~ 181 (216)
T cd07599 110 KKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKK-ELSLKDEKQL-------AKLERKLEEAKEEYEALNELLKSELPKLLA 181 (216)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC-CCChhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45778888888888877 2344444 21111 0011223344 445566677999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 79 ERRADFLNMLKGFVVNQVGYAEKIANV 105 (121)
Q Consensus 79 er~~D~~~ml~~f~~~Q~~~~~~~~~~ 105 (121)
-+..=|...|..|+..|..++..+-..
T Consensus 182 ~~~~~~~~~~~~~~~~ql~~~~~~~~~ 208 (216)
T cd07599 182 LADEFLPPLFKSFYYIQLNIYYTLHEY 208 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998776543
No 41
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=96.04 E-value=0.22 Score=41.73 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
+|...-..+|..+|..-..|=+.||.|++-..+|+.-|..-|.+-|+.-|++.+++-+.+++-.+++-...+.-+.+
T Consensus 322 ~kar~knkdv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~el~eleikhak~~~~ll~~~~~~lk~ 398 (399)
T KOG1660|consen 322 EKARAKNKDVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLVELSELEIKHAKTNYSLLRQCLLALKE 398 (399)
T ss_pred HHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Confidence 44444445677777777788899999999999999999999999999999999999999999999988887776654
No 42
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.86 E-value=0.082 Score=42.34 Aligned_cols=71 Identities=18% Similarity=0.185 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
...|++.+++++++++...+.++..|+ .+|=.| -.+..|..+-|..|+..|+.|+++.+.+-..+.|+++.
T Consensus 169 ~~~K~~~lkeE~eea~~K~E~~kd~~~-------a~Mynf-l~kE~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 169 RANKGEPLKEEEEECWRKLEQCKDQYS-------ADLYHF-ATKEDSYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHH-------HHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888889998887777777666654 344444 35678899999999999999999999999999999875
No 43
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=95.59 E-value=0.13 Score=40.18 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 51 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 51 ~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
.+..++.|+.+|++-++.....|..|-. ...|...-|..|+..|+.|+++++++-..+.+++..
T Consensus 155 ~eeEl~~Ae~kfe~s~E~a~~~M~~il~-~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~ 218 (223)
T cd07592 155 PDEELKQAEEKFEESKELAENSMFNLLE-NDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQE 218 (223)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777899999999999999988876 558999999999999999999999999999998864
No 44
>cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease.
Probab=95.18 E-value=0.49 Score=35.88 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 48 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 104 (121)
Q Consensus 48 I~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~ 104 (121)
+...+...+.|..+|+.+......|+=+|-.-+..=|...|.+|+..|..++..+.+
T Consensus 128 ~~k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~ 184 (195)
T cd07589 128 GGKVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLK 184 (195)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445788889999999999999999999999999999999999999999999876654
No 45
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.07 E-value=0.28 Score=39.05 Aligned_cols=70 Identities=13% Similarity=0.212 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYE-RIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 117 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye-~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~ 117 (121)
.|.++|+.+++..+...+.|+..+. .....+-. ..|.-+-|..|+..|+.|+++.+.+-..+.|.+.+-.
T Consensus 162 ~k~e~lr~e~E~ae~~~e~~kd~~~~~m~~~l~~---------e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~ 232 (248)
T cd07619 162 AKADALREEMEEAANRMEICRDQLSADMYSFVAK---------EIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQ 232 (248)
T ss_pred CccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888887765543 23333333 4455666999999999999999999999999987743
No 46
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=94.79 E-value=0.27 Score=38.55 Aligned_cols=63 Identities=14% Similarity=0.257 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 52 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 52 e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
+..++.|+.+|++-++.....|.-|...= .|...-|..|+..|+.|++++..+-..+.|.+..
T Consensus 156 eeElr~A~~kFees~E~a~~~M~n~l~~e-~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~ 218 (223)
T cd07613 156 DEELRQALEKFDESKEIAESSMFNLLEMD-IEQVSQLSALVQAQLEYHKQATQILQQVTVKLED 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888888888888886543 3778899999999999999999999999999874
No 47
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=94.72 E-value=0.34 Score=37.67 Aligned_cols=67 Identities=18% Similarity=0.226 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 49 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 49 ~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
..++..++.|+.+|++-++....-|.-|. +...|...-|..|+..|+.|+++++++-..+.....+-
T Consensus 145 ~~~eeElr~Ae~kfees~E~a~~~M~~i~-~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~~~~~ 211 (215)
T cd07593 145 SRLEEELRRAKAKYEESSEDVEARMVAIK-ESEADQYRDLTDLLDAELDYHQQSLDVLREVRQSWPSK 211 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45667777788888888888888888775 34578889999999999999999999999888766553
No 48
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.59 E-value=0.63 Score=35.77 Aligned_cols=66 Identities=6% Similarity=0.186 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 46 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 46 ~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
.++.++..++..+++.|...+=.--.-|.-.|.-|.-||.+.|.+|+..|..+..++-.+-..+.|
T Consensus 133 ~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~~~~~p 198 (200)
T cd07637 133 HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLLHELDP 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 356777888999999999999999999999999999999999999999999999999988776655
No 49
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.54 E-value=0.37 Score=38.09 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 51 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 51 ~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
+...++.|+.+|+.-.+....-|..+-.. .++..-|..|+..|..|+++++++-..+.+.
T Consensus 182 ~~~e~E~aEdef~~a~E~a~~~M~~il~~--~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~~ 241 (242)
T cd07600 182 ARVEVETAEDEFVSATEEAVELMKEVLDN--PEPLQLLKELVKAQLAYHKTAAELLEELLSV 241 (242)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455567777777777777777766333 7899999999999999999999998888775
No 50
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=94.53 E-value=1.7 Score=33.57 Aligned_cols=65 Identities=8% Similarity=0.153 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 47 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 47 eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
++.++...++.++..|....=.-..-|.-.+.-|.-||.+.|.+|+..|..+..++-++-..+.|
T Consensus 134 e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell~~l~~ 198 (200)
T cd07639 134 EVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEALSALHQ 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 77888889999999999999888999999999999999999999999999999999988776655
No 51
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=94.17 E-value=0.54 Score=36.89 Aligned_cols=63 Identities=11% Similarity=0.226 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 52 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 52 e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
+..++.|...|++-++..-..|.-|. +...|...-|..|+..|+.|+++++.+-..+.|.+..
T Consensus 156 ~eE~~~A~~kfees~E~a~~~M~n~l-e~e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~ 218 (223)
T cd07615 156 DEEIRQAVEKFEESKELAERSMFNFL-ENDVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQN 218 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667788888888888888888774 4567888999999999999999999999999998863
No 52
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=93.63 E-value=2.6 Score=32.46 Aligned_cols=64 Identities=14% Similarity=0.264 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 48 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 48 I~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
+.+++..+..+++.|....=.-.-=|...|.-|.-+|.+-|.+|+..|..+.+++.++-..+.|
T Consensus 138 ~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell~~l~p 201 (202)
T cd07606 138 LAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELLRQLEP 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4466777777888888888888888889999999999999999999999999999988666554
No 53
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=93.45 E-value=1.3 Score=34.48 Aligned_cols=66 Identities=3% Similarity=0.090 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 46 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 46 ~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
.++.+++..+...++.|...+=.-.--|...|.-|+-+|.+.|.+|+..|..++.++-.+-..+.|
T Consensus 140 ~e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~~d~~~ 205 (207)
T cd07635 140 PQLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELAKDFNH 205 (207)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 356688888999999999999888899999999999999999999999999999999887776655
No 54
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=93.17 E-value=1.6 Score=33.91 Aligned_cols=66 Identities=8% Similarity=0.193 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 46 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 46 ~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
.++.+++..+..+++.|...+=.-.--|.-.|.-|+-+|.+.|.+|+..|..++.++-.+-..+.|
T Consensus 140 ~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~~d~~p 205 (207)
T cd07602 140 NQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVAKDFKP 205 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 456667778888899999988888889999999999999999999999999999999887666655
No 55
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=93.12 E-value=1.5 Score=34.14 Aligned_cols=66 Identities=6% Similarity=0.140 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 46 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 46 ~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
.++.+++..++..++.|....=.-.--|.-.|.-|.-||.+.|.+|+..|..+..++-++-..+.|
T Consensus 140 ~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~~dl~p 205 (207)
T cd07634 140 SHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELAQEFAP 205 (207)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 467788888888999999999888999999999999999999999999999999999988776655
No 56
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=92.98 E-value=1.9 Score=33.55 Aligned_cols=65 Identities=5% Similarity=0.150 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 47 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 47 eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
++.+++..+...++.|..++=.-.--|...|.-|+-+|.+.|.+|+..|..++.++-.+-..+.|
T Consensus 141 ~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~~d~~~ 205 (207)
T cd07636 141 QLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELAKDFSD 205 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcc
Confidence 56667777777888898888888889999999999999999999999999999999887776655
No 57
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=92.94 E-value=1.1 Score=35.27 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033343 50 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 113 (121)
Q Consensus 50 ~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~ 113 (121)
.++..++.|+.+|++-.+....=|.-+.. -..+...-|.+|+..|..|++++.++-..+.+.+
T Consensus 167 ~~e~elr~Ae~kF~~~~E~a~~~M~~i~~-~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~l 229 (229)
T cd07594 167 QAEQDLRVAQSEFDRQAEITKLLLEGISS-THANHLRCLRDFVEAQMTYYAQCYQYMDDLQRQL 229 (229)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34444455666666555544433333321 2357788899999999999999999988887653
No 58
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.62 E-value=3.8 Score=31.60 Aligned_cols=84 Identities=12% Similarity=0.221 Sum_probs=65.9
Q ss_pred HHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 21 EKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 100 (121)
Q Consensus 21 ~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~ 100 (121)
+++.++..|....|..|+ .++.++...+..+++.|....=.----|.-.|.-|+-+|.+-|.+|+..|..+..
T Consensus 115 ~~~~~aL~K~~~~~k~k~-------~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~ 187 (200)
T cd07638 115 EEKENALVKNAQVQRNKQ-------HEVEEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFH 187 (200)
T ss_pred HHHHHHHHHhccCCcCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444443333 4556777788889999999888888889999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 033343 101 KIANVWAKVAE 111 (121)
Q Consensus 101 ~~~~~W~~~~~ 111 (121)
++-.+-..+.|
T Consensus 188 qG~el~~d~~p 198 (200)
T cd07638 188 QGYDLFSELGP 198 (200)
T ss_pred hHHHHHHHhcc
Confidence 99888777665
No 59
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=92.10 E-value=3.1 Score=32.31 Aligned_cols=65 Identities=9% Similarity=0.070 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033343 49 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 113 (121)
Q Consensus 49 ~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~ 113 (121)
.+....++.+++.|....=.-.-=|.-.+.-|.-||..-|.+|+..|..+.+++.++-..+-|-.
T Consensus 148 ~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll~~l~p~~ 212 (215)
T cd07604 148 AEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVIEHFRPYI 212 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56788899999999888877777788899999999999999999999999999999988887754
No 60
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=91.97 E-value=1.5 Score=34.51 Aligned_cols=60 Identities=23% Similarity=0.333 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 52 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 52 e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
+..+..|+.+|++-.+....=++.+. +...++..-|..|+..|..|++++.++-..+..+
T Consensus 169 e~elr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~~~ 228 (229)
T cd07616 169 EQELRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQKQ 228 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444466666666555555333443 5577899999999999999999999988877654
No 61
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=91.76 E-value=1.8 Score=33.89 Aligned_cols=60 Identities=22% Similarity=0.318 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 54 AKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 54 ~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
.+..|..+|++-++.....|.-|. +...|...-|..|+..|+.|+++++++-..+.+++.
T Consensus 158 elr~a~ekFees~E~a~~~M~~il-~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~ 217 (223)
T cd07614 158 ELRQAMEKFEESKEVAETSMHNLL-ETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLK 217 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666666554 345788899999999999999999999999999886
No 62
>PRK14155 heat shock protein GrpE; Provisional
Probab=91.61 E-value=1.8 Score=33.54 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
..+++.|+.++.+++...-.+..+|+++.++...|++...+.-...|..-|+.
T Consensus 19 ~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLp 71 (208)
T PRK14155 19 AQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLG 71 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788999999999999999999999999999999998887766655554443
No 63
>PRK14151 heat shock protein GrpE; Provisional
Probab=90.92 E-value=2.6 Score=31.84 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
.++..|+.++.++.+..-.+..+|+++.++...|.+...+.=...|..-|..
T Consensus 27 ~~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~a~~~~~~~LLp 78 (176)
T PRK14151 27 ARVQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKFALEKFAGDLLP 78 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788999999999999999999999999999999998887766655554444
No 64
>PRK14157 heat shock protein GrpE; Provisional
Probab=90.63 E-value=2.6 Score=33.28 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
-..++..|+.++.++.+..-.+..+|+++.++...|++++.+.=...|..-|+.
T Consensus 82 ~~~~l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~a~~~~~~dLLp 135 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQHGIIDVLTALLP 135 (227)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446899999999999999999999999999999999999987776655544443
No 65
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=90.60 E-value=6.8 Score=30.55 Aligned_cols=77 Identities=5% Similarity=0.152 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
.|+..+..++...-......+.+|+.=-...-..++.|+.+|-.-|+.+|..|+......+..+-++=+.+...+..
T Consensus 157 ~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~ 233 (261)
T cd07648 157 AKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSENHSAVGQVHEEFKRQVDE 233 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHh
Confidence 45566677777777777777777877777778889999999999999999999998877666665655555554443
No 66
>PRK14149 heat shock protein GrpE; Provisional
Probab=90.59 E-value=2.7 Score=32.28 Aligned_cols=56 Identities=7% Similarity=-0.027 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 35 KSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 35 ~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
..+..+++.|+.++.++....-.+..+|+++.++...|.+...+-=...|..-|+.
T Consensus 39 ~~~~~~~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~a~~~~~~~LLp 94 (191)
T PRK14149 39 EKEGEIKEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLP 94 (191)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34667999999999999999999999999999999999988877666555544443
No 67
>PRK14140 heat shock protein GrpE; Provisional
Probab=90.40 E-value=4.4 Score=31.09 Aligned_cols=54 Identities=22% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 92 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~ 92 (121)
.++..++.++.+++...-.+..+|+++.++...|++...+-=..+|..-|..-+
T Consensus 44 ~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~a~~~~~~~LLpvl 97 (191)
T PRK14140 44 AKIAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKYRAQSLASDLLPAL 97 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999999999999999999999999887776666555555443
No 68
>PRK14147 heat shock protein GrpE; Provisional
Probab=90.30 E-value=3.2 Score=31.19 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
..+++.|+.++.+++...-.+..+|+++.+++..|.+.....=..+|..-|..
T Consensus 24 ~~~l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~a~~~~~~~lLp 76 (172)
T PRK14147 24 KAEVESLRSEIALVKADALRERADLENQRKRIARDVEQARKFANEKLLGELLP 76 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999998887766655554444
No 69
>PRK14141 heat shock protein GrpE; Provisional
Probab=90.28 E-value=3 Score=32.46 Aligned_cols=53 Identities=15% Similarity=0.127 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLK 89 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~ 89 (121)
=..+++.|+.++.++....-.+..+|+++.++...|++...+-=...|..-|+
T Consensus 36 ~~~~i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~a~~~~~~dLL 88 (209)
T PRK14141 36 EPDPLEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAYGIAGFARDML 88 (209)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999999999999999888766655544443
No 70
>PRK14161 heat shock protein GrpE; Provisional
Probab=90.27 E-value=3.2 Score=31.42 Aligned_cols=54 Identities=17% Similarity=0.128 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGF 91 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f 91 (121)
..+++.|+.++.++.+..-.+..+|+++.+++..|.+...+.=..+|..-|+.-
T Consensus 25 ~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~a~~~~~~~LLpv 78 (178)
T PRK14161 25 NPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDYAIATFAKELLNV 78 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 457889999999999999999999999999999999988887776665555443
No 71
>KOG3725 consensus SH3 domain protein SH3GLB [Signal transduction mechanisms]
Probab=90.12 E-value=4.5 Score=33.10 Aligned_cols=69 Identities=26% Similarity=0.385 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 47 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 47 eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
+|+..|+.+..|+.+|++-.+.-+==++-...--.. -..-|.+|+..|..||.+|-++--.+..++.+.
T Consensus 197 ~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH~n-hLrCL~dFVeaQmtyYAQcyq~MlDLQkqLg~f 265 (375)
T KOG3725|consen 197 TIEQAEQELRVAQAEFDRQAEITRLLLEGISSTHNN-HLRCLRDFVEAQMTYYAQCYQLMLDLQKQLGGF 265 (375)
T ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 677888888889999986544333333333333222 234689999999999999999998888888764
No 72
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=89.95 E-value=4.6 Score=31.55 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 47 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 47 eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
++.++....+..++-|...-=.-.-=|.-.+.-|..|+...|++|...|..+.+++.++-..+.|-++
T Consensus 144 e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~l~~l~pyik 211 (213)
T cd07640 144 DMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKAAQNLGPFIE 211 (213)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 34444455555555554333222333444567789999999999999999999999999888887554
No 73
>PRK14163 heat shock protein GrpE; Provisional
Probab=89.61 E-value=4.5 Score=31.64 Aligned_cols=54 Identities=9% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 92 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~ 92 (121)
.++..|+.++.++.+..-.++.+|+++.++...|.+....--...|..-|+.-+
T Consensus 47 ~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVl 100 (214)
T PRK14163 47 AQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVL 100 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 578999999999999999999999999999999999988877766665555433
No 74
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=89.53 E-value=6.3 Score=30.71 Aligned_cols=66 Identities=3% Similarity=0.053 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 46 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 46 ~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
.++.++...+...++.|-.++=.----|.-.|.-|.-|+.+.|.+|+..|..++.++-.+-..+.|
T Consensus 140 ~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~~df~~ 205 (207)
T cd07633 140 SQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELTQDFLP 205 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcc
Confidence 477788888888999998888877788899999999999999999999999999999887766655
No 75
>PRK14139 heat shock protein GrpE; Provisional
Probab=89.39 E-value=4 Score=31.13 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGF 91 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f 91 (121)
.++..|+.++.++++..-.+..+|+++.++...|.+...+-=..+|..-|+.-
T Consensus 39 ~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv 91 (185)
T PRK14139 39 AELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPV 91 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 57899999999999999999999999999999999988877666655554443
No 76
>PRK14154 heat shock protein GrpE; Provisional
Probab=89.36 E-value=3.9 Score=31.81 Aligned_cols=50 Identities=10% Similarity=0.122 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNML 88 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml 88 (121)
.+++.++.++.++....-.+..+|+++.+++..|.+...+.-...|..-|
T Consensus 59 ~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~L 108 (208)
T PRK14154 59 GQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDL 108 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999988887774444333
No 77
>PRK14158 heat shock protein GrpE; Provisional
Probab=89.25 E-value=5.4 Score=30.63 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
.++..++.++.++....-.+..+|+++.+++..|.+...+-=..+|..-|+.
T Consensus 47 ~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLp 98 (194)
T PRK14158 47 EALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILP 98 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556667777777777778888999999999999988887766665555444
No 78
>PRK14156 heat shock protein GrpE; Provisional
Probab=89.07 E-value=4.3 Score=30.76 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLK 89 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~ 89 (121)
..+++.++.++.++....-.+..+|+++.++...|++...+.=..+|..-|+
T Consensus 33 ~~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~a~~~~~~~LL 84 (177)
T PRK14156 33 KSELELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRYRSQDLAKAIL 84 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678889999999999999999999999999999998877666655544443
No 79
>PRK14159 heat shock protein GrpE; Provisional
Probab=88.56 E-value=5 Score=30.36 Aligned_cols=54 Identities=19% Similarity=0.097 Sum_probs=44.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 35 KSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNML 88 (121)
Q Consensus 35 ~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml 88 (121)
..-+.+++.|+.++.++....-.+..+|+++.++...|.+...+.=...|..-|
T Consensus 26 ~~~~~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~a~~~~~~~L 79 (176)
T PRK14159 26 NIEDVEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAYANESFAKDL 79 (176)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999888776555444433
No 80
>PRK14144 heat shock protein GrpE; Provisional
Probab=88.38 E-value=6.3 Score=30.47 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 93 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~ 93 (121)
.+++.|+.++.++....-.+..+|+++.+++..|.+.....=..+|..-|+.-+-
T Consensus 52 ~~i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~D 106 (199)
T PRK14144 52 EQLTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKYGVEKLISALLPVVD 106 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 5789999999999999999999999999999999999888777666655554433
No 81
>PRK14143 heat shock protein GrpE; Provisional
Probab=87.96 E-value=5.3 Score=31.62 Aligned_cols=52 Identities=13% Similarity=0.256 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
.++..|+.++.++....-.+..+|+++.++...|.+.+.+.=...|..-|+.
T Consensus 74 ~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLp 125 (238)
T PRK14143 74 QELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILP 125 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788888888888999999999999999988877666555544443
No 82
>PRK14153 heat shock protein GrpE; Provisional
Probab=87.94 E-value=5.4 Score=30.67 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
..+++.++.++.+++...-.+..+|+++.++...|.+...+-=...|..-|+.
T Consensus 39 ~~ei~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~a~~~~~~~LLp 91 (194)
T PRK14153 39 DSETEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKFVLEQVLLDLLE 91 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35788899999999999999999999999999999888777666655544443
No 83
>PRK14148 heat shock protein GrpE; Provisional
Probab=87.57 E-value=7.8 Score=29.79 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGF 91 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f 91 (121)
.++..|+.++.++....-.+..+|+++.+++..|.+...+.=...|..-|..-
T Consensus 47 ~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~a~~~~~~~LLpV 99 (195)
T PRK14148 47 DTIKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKFGIEKFAKELLPV 99 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 57888888888999999999999999999999999988877666555554443
No 84
>PRK14146 heat shock protein GrpE; Provisional
Probab=87.20 E-value=6.3 Score=30.69 Aligned_cols=52 Identities=15% Similarity=0.278 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
.++..|+.++.++.+..-.+..+|+++.++...|++.....-...|..-|+.
T Consensus 61 ~~l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~a~e~~~~~lLp 112 (215)
T PRK14146 61 KELDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKEAVKSLVSGFLN 112 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688899999999999999999999999999999999887776655554443
No 85
>PRK14145 heat shock protein GrpE; Provisional
Probab=87.03 E-value=7 Score=30.12 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
.++..++.++.++....-.+..+|+++.++...|.+...+.-..+|..-|..-+-+
T Consensus 52 ~~l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~e~~~~~LLpV~Dn 107 (196)
T PRK14145 52 QKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEYGKEQVILELLPVMDN 107 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 45778888888888888899999999999999999998888777776666554433
No 86
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=86.51 E-value=11 Score=29.53 Aligned_cols=63 Identities=6% Similarity=0.061 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 52 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 52 e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
....+.+++.|...-=.-.-=|.-.+.-|..|+..-+..|...|..+.+++.+.-+.+.|-++
T Consensus 151 ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le~l~p~~~ 213 (215)
T cd07642 151 AEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVETLKPSIE 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555554433322224555788899999999999999999999999999999988764
No 87
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=86.32 E-value=10 Score=28.86 Aligned_cols=53 Identities=23% Similarity=0.266 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGF 91 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f 91 (121)
.++.+|+.++.++....-.+..+|+++.++...|++-..+--..+|..=|..-
T Consensus 43 ~~i~~Le~q~~e~~~~~lr~~Ae~eN~rkR~~re~e~~~k~a~e~~~~dlLpv 95 (193)
T COG0576 43 QEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAKKYAIEKFAKDLLPV 95 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999988877666655544443
No 88
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=86.24 E-value=14 Score=28.68 Aligned_cols=63 Identities=13% Similarity=0.175 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 47 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKV 109 (121)
Q Consensus 47 eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~ 109 (121)
.++.....+..++..|+..+.....=|+=++.-|..+|...|..|...-..|+..+.+.-+.+
T Consensus 138 k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~l~~~ 200 (203)
T cd00011 138 RLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKVLEQT 200 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566777788889999999999999999999999999999999999887777777666655444
No 89
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=85.77 E-value=15 Score=28.53 Aligned_cols=64 Identities=11% Similarity=0.152 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 48 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 48 I~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
++.+...+..++..|+........=|+=++..|..+|+.-|..|.-....|+..+.++-+..+.
T Consensus 136 ~~~~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L~~~~~ 199 (201)
T cd07660 136 LEEAQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQLEQTLK 199 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 3347777888999999999999999999999999999999999999999999988887766554
No 90
>PRK14162 heat shock protein GrpE; Provisional
Probab=85.64 E-value=12 Score=28.83 Aligned_cols=50 Identities=18% Similarity=0.181 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNML 88 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml 88 (121)
.+++.|+.++.++....-.++.+|+++.+++..|++...+.=...|..-|
T Consensus 46 ~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~L 95 (194)
T PRK14162 46 KEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDV 95 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888899999999999999999999999999998887776544444333
No 91
>PRK14160 heat shock protein GrpE; Provisional
Probab=85.61 E-value=8.7 Score=29.94 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
.++..|+.++.++....-.+..+|+++.++...|.+.....=..+|..-|+.
T Consensus 68 ~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLp 119 (211)
T PRK14160 68 EENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLP 119 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888888888888889999999999999999988877666655544443
No 92
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.94 E-value=16 Score=28.40 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhc
Q 033343 49 RVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWA-KVAEETS 114 (121)
Q Consensus 49 ~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~-~~~~e~~ 114 (121)
.+++..+..+++.|....=.-..-|.-.|.-|+-||.+-|.+|+..|..+.+++-.+-. .+-|=+.
T Consensus 142 ~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell~~~~~pf~~ 208 (215)
T cd07601 142 IEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMFTRQTEEFLS 208 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888899999999888888999999999999999999999999999999998876 6666544
No 93
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=84.82 E-value=13 Score=29.09 Aligned_cols=60 Identities=23% Similarity=0.291 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033343 53 DAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEET 113 (121)
Q Consensus 53 ~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~ 113 (121)
..+..|+.+|++=++..+.=|.-+.. =..+-..-|.+|+..|..|++++.++-..+.+++
T Consensus 161 ~elr~A~~kf~~~~E~a~~~M~~il~-~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~~ 220 (220)
T cd07617 161 HELRVAQTEFDRQAEVTRLLLEGISS-THVNHLRCLHEFVEAQATYYAQCYRHMLDLQKQL 220 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34555555665544433332222211 1235677789999999999999999988887653
No 94
>cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate
Probab=84.67 E-value=17 Score=28.32 Aligned_cols=63 Identities=13% Similarity=0.254 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 033343 48 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 117 (121)
Q Consensus 48 I~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~ 117 (121)
++..+..+..++..|+..+-....=|+=+...|-.=|...|..|- ..++.+|++-..-+++|+
T Consensus 139 fr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yq-------nal~~y~~kt~~~~~~i~ 201 (204)
T cd07661 139 FRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQ-------NTLLQFWEKTSRTMATIH 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 555566666788999999999999999999999887777777664 455555555555544443
No 95
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=84.41 E-value=13 Score=29.09 Aligned_cols=65 Identities=8% Similarity=0.065 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 50 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 50 ~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
++....+..++-|..+-=.-.-=|.-.+.-|..|+...|++|...|..|.+++.++-..+.|-++
T Consensus 149 Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~~~~l~py~k 213 (215)
T cd07641 149 EIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKTADKLKQYIE 213 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444555454433333333444778899999999999999999999999999988887553
No 96
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=84.33 E-value=9.1 Score=31.20 Aligned_cols=62 Identities=18% Similarity=0.223 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 51 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 51 ~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
+...++.++++|-..++....+|..+=. ..++...|+.|+..|..|++.+++.-+.+++.+.
T Consensus 227 ~r~~lE~aEDeFv~aTeeAv~~Mk~vl~--~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l~ 288 (289)
T PF10455_consen 227 LRVELEQAEDEFVSATEEAVEVMKEVLD--NSEPLRLLKELVKAQLEYHKKAAEALSELLKSLD 288 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445667778888888888888887754 5678899999999999999999999999888763
No 97
>PRK14164 heat shock protein GrpE; Provisional
Probab=84.31 E-value=12 Score=29.33 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
...+..|+.++.++....-.+..+|+++.++...|++...+-=...|..-|+.
T Consensus 76 ~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~a~~~~~~~LLp 128 (218)
T PRK14164 76 DGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIETAKAGVATDLLP 128 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 36788899999999999999999999999999999998877766655555544
No 98
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=80.67 E-value=11 Score=27.07 Aligned_cols=54 Identities=22% Similarity=0.251 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 92 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~ 92 (121)
.++..++.++.++......+..+|+++.++...|.++....-...|..-|+..+
T Consensus 18 ~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~ 71 (165)
T PF01025_consen 18 EELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVL 71 (165)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999999999999998888877665555544444433
No 99
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=76.23 E-value=36 Score=26.75 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=56.3
Q ss_pred HHHHHhhhcccCCchhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 21 EKLEAASSKIFGGDKSRIRKIEELKETIRVTED--AKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGY 98 (121)
Q Consensus 21 ~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~--~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~ 98 (121)
++++++..|...-|..|+. ++.+.+. .+..+++.|-.++=.----|.-.|.-|+-+|.+-|.+|+..|+.+
T Consensus 119 e~~d~AL~KnaqlskkK~~-------E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TF 191 (215)
T cd07632 119 NEHDLSMAKYSRLPKKREN-------EKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINF 191 (215)
T ss_pred HHHHHHHHHHhhCCcCCch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555544443322 2222333 366677777776666666777889999999999999999999999
Q ss_pred HHHHHHH----HHHHHH
Q 033343 99 AEKIANV----WAKVAE 111 (121)
Q Consensus 99 ~~~~~~~----W~~~~~ 111 (121)
+.++-+. |..|+.
T Consensus 192 FhQGyeL~~~~~~~~~~ 208 (215)
T cd07632 192 FKKGAELFSKKLDSFLS 208 (215)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9887665 555544
No 100
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=74.49 E-value=40 Score=26.47 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 51 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 104 (121)
Q Consensus 51 ~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~ 104 (121)
....+...++.|..+.=.-.--|...|.-|+-+|.+-|.+|+..|..+..++-.
T Consensus 144 a~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e 197 (215)
T cd07631 144 VTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSE 197 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 334444477777777777777888999999999999999999999999999888
No 101
>PRK14142 heat shock protein GrpE; Provisional
Probab=73.45 E-value=26 Score=27.64 Aligned_cols=51 Identities=6% Similarity=0.141 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
-...+..+|.++....-.+..+|+++.++...|.++..+--...|..-|+.
T Consensus 41 ~~~~~~~e~~elkdk~lR~~AEfEN~RKR~erE~e~~~~~A~e~~~kdLLp 91 (223)
T PRK14142 41 DAAHTEDKVAELTADLQRVQADFANYRKRALRDQQAAADRAKASVVSQLLG 91 (223)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888899999999999999999999999987666655554443
No 102
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=70.71 E-value=12 Score=23.30 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
|+.+++.++...+..+...+.+.++|++.+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~v 30 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESV 30 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777666543
No 103
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=69.43 E-value=49 Score=25.33 Aligned_cols=71 Identities=20% Similarity=0.188 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN---------------RTELERLDKERRADFLNMLKGFVVNQVGYAEKIA 103 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~---------------~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~ 103 (121)
.+++-++..+.......+.|+.+|..-.... ...++.|+.+|-..|+++|..|+..--.....+.
T Consensus 161 ~~~eK~~~k~~k~~~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~ 240 (251)
T cd07653 161 ADVEKAKANANLKTQAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIA 240 (251)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455556666666666666777665544444 3447789999999999999999887777666666
Q ss_pred HHHHHH
Q 033343 104 NVWAKV 109 (121)
Q Consensus 104 ~~W~~~ 109 (121)
++=..+
T Consensus 241 ~~~~~i 246 (251)
T cd07653 241 KCLDGI 246 (251)
T ss_pred HHHHhH
Confidence 554443
No 104
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=67.30 E-value=61 Score=25.69 Aligned_cols=71 Identities=8% Similarity=0.182 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVA 110 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~ 110 (121)
|+..++.++...-......+.+|+.--...-..++.++++|-.-|+++|..|+..--..+-.+-++=+.|.
T Consensus 165 k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~s~~~~~~~~~~e~ir 235 (269)
T cd07673 165 KSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSVKEIHIQIGQVHEEFI 235 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 33445555555555555566666666666667889999999999999999999844333333444444443
No 105
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=65.80 E-value=62 Score=25.23 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 99 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~ 99 (121)
|+.....++....+..+.++.+|++=-...-..++-|+.+|-.=|+++|-+|...-..++
T Consensus 162 K~~Ka~~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~~~~~~ 221 (233)
T cd07649 162 KSTQAGDDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYTQLRHETD 221 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555666666666666666777666677777888999999999999999987655443
No 106
>PRK14150 heat shock protein GrpE; Provisional
Probab=64.29 E-value=62 Score=24.66 Aligned_cols=52 Identities=25% Similarity=0.288 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVT----EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 39 ~Ki~~l~~eI~~~----e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
.++..|+.++..+ ....-.+..+|+++.++...|++....-=...|..-|..
T Consensus 41 ~~i~~l~~~l~~~~~~~kd~~lR~~AefeN~rkR~~kE~~~~~~~a~~~~~~~lL~ 96 (193)
T PRK14150 41 ARIAELEAQLAEAQAEERDSVLRARAEVENIRRRAEQDVEKAHKFALEKFANELLP 96 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777764 466677888999999999998888777665544444433
No 107
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=63.97 E-value=77 Score=25.68 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=53.6
Q ss_pred HHHhHHHHHHHHH--HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 7 AFTDRSSALLTMR--AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADF 84 (121)
Q Consensus 7 a~~dR~~al~~~~--~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~ 84 (121)
.+.+|.+.+.-.+ ..++.....||.-. .....|+..|+.++-.+|+....++.++.+|+.....|=-..+
T Consensus 132 ~IR~~E~sl~p~R~~r~~l~d~I~kLk~k-~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~------- 203 (271)
T PF13805_consen 132 SIRNREESLQPSRDRRRKLQDEIAKLKYK-DPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQKLKEAYSLK------- 203 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhHHHHHhHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHH-------
Confidence 4455555555552 22332222333211 1134699999999999999999999999999988766654433
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033343 85 LNMLKGFVVNQVGYAEK 101 (121)
Q Consensus 85 ~~ml~~f~~~Q~~~~~~ 101 (121)
...|+.+++-|+-++.-
T Consensus 204 f~Al~E~aEK~~Ila~~ 220 (271)
T PF13805_consen 204 FDALIERAEKQAILAEY 220 (271)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 23456666666544433
No 108
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=63.88 E-value=55 Score=23.96 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 43 ELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 93 (121)
Q Consensus 43 ~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~ 93 (121)
.++...+.+...++.|+..-....+--+.|++.+..-=++||..+...|..
T Consensus 8 ~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 8 ALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666777778888888888888888888888888888888888877766
No 109
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=61.60 E-value=33 Score=30.35 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 36 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQV 96 (121)
Q Consensus 36 ~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~ 96 (121)
...+.+++|+.++....+++..+..+++.-.+.+...+..+..-...|+...-..|.-.+.
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~~~~~ 276 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYAIKSG 276 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhCCCcc
Confidence 3456888888888899999999999999999999999999999999999998877765554
No 110
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=61.24 E-value=93 Score=25.66 Aligned_cols=99 Identities=22% Similarity=0.308 Sum_probs=51.7
Q ss_pred HHHHHhHHHHHHHH----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 5 RSAFTDRSSALLTM----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER 80 (121)
Q Consensus 5 k~a~~dR~~al~~~----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er 80 (121)
+..+-||.-+|+.= -.+..++ + ..|..|+++|+.-...+-...++ =.-..|.||..|--||
T Consensus 195 ~~cL~dREvaLl~EmdkVK~EAmei-----L---~aRqkkAeeLkrltd~A~~MsE~-------Ql~ELRadIK~fvs~r 259 (302)
T PF07139_consen 195 QSCLMDREVALLAEMDKVKAEAMEI-----L---DARQKKAEELKRLTDRASQMSEE-------QLAELRADIKHFVSER 259 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----H---HHHHHHHHHHHHHHHHHhhcCHH-------HHHHHHHHHHHHhhhh
Confidence 44566777776554 1222222 2 44888998888765554333322 2233578888888887
Q ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhccC
Q 033343 81 RAD--FLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANEN 120 (121)
Q Consensus 81 ~~D--~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~~~~ 120 (121)
.-| ++.... ...-...-...+...+.|.+-=..|+.|+
T Consensus 260 k~de~lg~~~r--f~~d~~~l~~~i~~~g~v~~~~~~ys~rs 299 (302)
T PF07139_consen 260 KYDEELGRAAR--FTCDPEQLKKSIMSFGEVSHPKNSYSSRS 299 (302)
T ss_pred hhHHHHhHhhh--cccCHHHHHHHHHhcCccccCcCCCCCCC
Confidence 654 333322 11222233444455555555555555543
No 111
>PRK10325 heat shock protein GrpE; Provisional
Probab=61.20 E-value=72 Score=24.38 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTE----DAKSVAINEYERIKENNRTELERLDKERRADFLNMLK 89 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e----~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~ 89 (121)
..++..|+.++.+.+ ...-.+..+|+++.+++..|++....-=...|..-|+
T Consensus 41 ~~~~~~l~~~~~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~lL 96 (197)
T PRK10325 41 DEKIANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELL 96 (197)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346677777777753 5677889999999999999998887765554444333
No 112
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=60.63 E-value=45 Score=21.83 Aligned_cols=65 Identities=23% Similarity=0.338 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERI-KENNRTELERLDKER-RADFLNMLKGFVVNQVGYAEKIA 103 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i-~~~~~~EieRF~~er-~~D~~~ml~~f~~~Q~~~~~~~~ 103 (121)
+++..+...+..+-......-..+..+ ......--.+++.+| ..||..+|..|-..|-.+.++.-
T Consensus 33 ~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k 99 (102)
T PF14523_consen 33 EKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 577777777777777777777776666 222233334566655 68999999999999999987653
No 113
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=60.45 E-value=33 Score=24.59 Aligned_cols=71 Identities=18% Similarity=0.218 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 108 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~ 108 (121)
..++..++.+|..++..++.....|......+-.=..|.++++..-....+.+|+..-+.....+-.+...
T Consensus 10 ~~~~~~~~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~~~~~~~~~ll~v~D~l~~a~~~ 80 (165)
T PF01025_consen 10 DEEIEELEEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKYALEKFLKDLLPVLDNLERALEA 80 (165)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677777788887777777777655544444455555555444455666666666666555555533
No 114
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=59.57 E-value=59 Score=22.89 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 62 YERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKI 102 (121)
Q Consensus 62 ye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~ 102 (121)
....++....||+-|..+|..+|+.-...++..|=....++
T Consensus 33 LKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~ 73 (108)
T KOG1772|consen 33 LKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRL 73 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Confidence 44445555566666666777777666666655554444443
No 115
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=59.42 E-value=66 Score=28.15 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKS---VAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e---~a~~eye~i~~~~~~EieRF~~e 79 (121)
.|+.+|+..|..++..++ .-..+++.-.+....|+.+++.+
T Consensus 76 ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 445555555555444444 44444555555555555555443
No 116
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=57.34 E-value=75 Score=24.40 Aligned_cols=43 Identities=19% Similarity=0.330 Sum_probs=34.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 34 DKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 34 ~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
+..+..=..+|+.++++....+.+--.|...|+..|-.+++.+
T Consensus 42 pftk~G~T~eLkNeLREVREELkEKmeEIKQIKdiMDKDFDKL 84 (205)
T PF15079_consen 42 PFTKTGGTQELKNELREVREELKEKMEEIKQIKDIMDKDFDKL 84 (205)
T ss_pred CccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4556666778899999988888888888888888888777644
No 117
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=56.41 E-value=95 Score=24.29 Aligned_cols=57 Identities=14% Similarity=0.271 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKE--------------NNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~--------------~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
...++-++..+...+..++.++.+|..... .+-..++.|+.+|..-|+.+|.+|...
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777766655 344567778889999999999988775
No 118
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=54.79 E-value=51 Score=29.44 Aligned_cols=68 Identities=18% Similarity=0.281 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKS----VAINEYERIKENNRTELERLD--------KERRADFLNMLKGFVVNQVGYAEKIANVWA 107 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e----~a~~eye~i~~~~~~EieRF~--------~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~ 107 (121)
+++........+++.+. .--.+|+.|.++++.|+++|. ++|-.+|+.=|..-=..=..+=++..+.|.
T Consensus 523 rve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI~qEYeki~~dp~y~eeK~RceYLhsKLaHIK~lI~efDk~~~~s~s 602 (604)
T KOG4796|consen 523 RVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQILQEYEKIRKDPNYMEEKQRCEYLHSKLAHIKTLIGEFDKQQRSSWS 602 (604)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 44444455555555444 334578999999999999996 455566666555433333344445555553
No 119
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=52.51 E-value=49 Score=22.95 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER 80 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er 80 (121)
-.=.+++++.+|..+......-..+||.++.+.-.=+.+++..|
T Consensus 50 esitle~ve~Ei~~lQ~qL~~~ldeYE~~VrrLE~fvkvLn~~k 93 (99)
T PF11083_consen 50 ESITLEQVEKEIRELQNQLGLYLDEYEKLVRRLEKFVKVLNISK 93 (99)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34578899999999999999999999999998876666666444
No 120
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=52.16 E-value=1.9e+02 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.382 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 68 NNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 104 (121)
Q Consensus 68 ~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~ 104 (121)
.+.+|+++++.+ -.+|...+.. +..+..+++..+.
T Consensus 636 ~~~~EL~~~~~~-l~~l~~si~~-lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 636 EFKKELERMKDQ-LQDLKASIEQ-LKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHh
Confidence 455666666664 5556666555 4555555444333
No 121
>PRK14158 heat shock protein GrpE; Provisional
Probab=50.72 E-value=1.1e+02 Score=23.42 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=48.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 34 DKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 104 (121)
Q Consensus 34 ~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~ 104 (121)
+......+..++.++..++..++..+..|-+....+-.=-.|.++++..--.....+|+...+.....+-.
T Consensus 35 ~~~~~~~~~~le~~l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~a~~~~~~~lLpV~DnLer 105 (194)
T PRK14158 35 PVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKYGNESLILEILPAVDNMER 105 (194)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHH
Confidence 45577788889999988888888888887665555555555566666665666666666666555544433
No 122
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=50.68 E-value=1.2e+02 Score=23.85 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYE---------------RIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 104 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye---------------~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~ 104 (121)
.++-++.....-....+.++.+|. +-.-.+..-++.|++.|...|+++|..|+..--.....+..
T Consensus 164 ~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i~~ 243 (253)
T cd07676 164 DVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPIIGK 243 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 334455666666666666666653 33444556679999999999999999999988777766554
Q ss_pred HHH
Q 033343 105 VWA 107 (121)
Q Consensus 105 ~W~ 107 (121)
.=.
T Consensus 244 cl~ 246 (253)
T cd07676 244 CLD 246 (253)
T ss_pred HHH
Confidence 433
No 123
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=50.23 E-value=61 Score=20.20 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNR 70 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~ 70 (121)
.|+.+|..+|..+...+..|+.|-.+..+++-
T Consensus 17 ~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 17 SKVDQLSSDVNALRADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888888888877777766654
No 124
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.83 E-value=1.3e+02 Score=24.79 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNR 70 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~ 70 (121)
.-+..++..|.+....++..+++++.++..+.
T Consensus 74 ~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~ 105 (301)
T PF06120_consen 74 ANIAKAEESIAAQKRAIEDLQKKIDSLKDQIK 105 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777766665553
No 125
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=47.97 E-value=80 Score=20.94 Aligned_cols=45 Identities=20% Similarity=0.371 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 99 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~ 99 (121)
..+.+|+.++..+-..++..+.+.+.+...| .+|..|+.+....+
T Consensus 23 ~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN----------------~~Lq~YI~nLm~~s 67 (80)
T PF10224_consen 23 QEILELQDSLEALSDRVEEVKEENEKLESEN----------------EYLQQYIGNLMSSS 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHhh
Confidence 4556667777777777777777776666665 67888988886643
No 126
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.64 E-value=1.3e+02 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 55 KSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 95 (121)
Q Consensus 55 ~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q 95 (121)
.+..+..|+.=-...-.-++.|+.+|..=|+++|-.|+-.=
T Consensus 183 l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~i 223 (239)
T cd07647 183 LEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNLG 223 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444445556677888888888888888887543
No 127
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=46.96 E-value=82 Score=23.24 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
.....|..+|.++|..+..+++.|...+..-+..+..|
T Consensus 118 ~~~~~l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~F 155 (186)
T PF04011_consen 118 ENFQQLMAQLEETENRIAAARRAYNDAVRDYNTAIRQF 155 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56888899999999999999999999888888777766
No 128
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=45.71 E-value=60 Score=20.28 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=24.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 34 DKSRIRKIEELKETIRVTEDAKSVAINEYER 64 (121)
Q Consensus 34 ~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~ 64 (121)
+-+=+.+++.||..+.++|.....++.+...
T Consensus 27 ~ltiEqRLa~LE~rL~~ae~ra~~ae~~~~~ 57 (60)
T PF11471_consen 27 PLTIEQRLAALEQRLQAAEQRAQAAEARAKQ 57 (60)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999988888877543
No 129
>PRK15396 murein lipoprotein; Provisional
Probab=45.25 E-value=88 Score=20.64 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
.|++++..++.....++..|+.|-++..+++
T Consensus 39 ~kvdql~~dv~~~~~~~~~a~~eA~raN~Rl 69 (78)
T PRK15396 39 AKVDQLSNDVNAMRSDVQAAKDDAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666665555554
No 130
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=44.82 E-value=91 Score=21.04 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNR 70 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~ 70 (121)
+|++.++..+..++........++..+...+.
T Consensus 94 ~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~ 125 (129)
T cd00890 94 KRLETLEKQIEKLEKQLEKLQDQITELQEELQ 125 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777766553
No 131
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=44.68 E-value=1.5e+02 Score=23.12 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIK---------------ENNRTELERLDKERRADFLNMLKGFVV 93 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~---------------~~~~~EieRF~~er~~D~~~ml~~f~~ 93 (121)
+++.++............|..+|-.-. -.+...++.+++.|...++++|.+|+.
T Consensus 162 ~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k~~l~~~~~ 230 (237)
T cd07657 162 KLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWKKILQEYLR 230 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555666666654433 344556666666666666666666654
No 132
>PRK11546 zraP zinc resistance protein; Provisional
Probab=42.97 E-value=1.3e+02 Score=22.04 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=38.6
Q ss_pred hhHHHHHHhHHHHHHHH-H--HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM-R--AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYE 63 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~-~--~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye 63 (121)
++|+..|.+....|+.- . ...|.+ |.-++.+-..||..|..||.++..++.+-+-.|.
T Consensus 53 q~I~~~f~~~t~~LRqqL~aKr~ELnA----Ll~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 53 QKIHNDFYAQTSALRQQLVSKRYEYNA----LLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777776665 2 233333 3334455668999999999999988776665543
No 133
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=41.65 E-value=99 Score=20.83 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
.|+.++..++..+..+++.|+.|-.+-.+++
T Consensus 38 ~kvdql~~dv~~a~aaa~aAk~EA~RAN~Ri 68 (85)
T PRK09973 38 AKIARLEQDMKALRPQIYAAKSEANRANTRL 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5666777777777777777777666666655
No 134
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=41.01 E-value=1.3e+02 Score=21.20 Aligned_cols=46 Identities=22% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 50 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 95 (121)
Q Consensus 50 ~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q 95 (121)
+.+.....+..+|+++.++...|.+.....-..+|..-|+..+..-
T Consensus 3 ~~~~~~~r~~ae~~N~rkr~~~e~~~~~~~~~~~~~~~ll~v~D~l 48 (137)
T cd00446 3 ELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNL 48 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667889999999999999999988887777766666554443
No 135
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=40.11 E-value=55 Score=25.71 Aligned_cols=28 Identities=18% Similarity=0.404 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIK 66 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~ 66 (121)
.+++.++....++..+.+.-++||++..
T Consensus 172 ~~Le~~~~~~~al~Kq~e~~~~EydrLl 199 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSEGLQDEYDRLL 199 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3344444444444444444444444433
No 136
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=39.42 E-value=1.8e+02 Score=22.63 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 47 TIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIAN 104 (121)
Q Consensus 47 eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~ 104 (121)
.++..+.....++..|+..+..+..=|+=++..|..||..-|..|...-..|+..+.+
T Consensus 170 ~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~ 227 (229)
T PF06456_consen 170 KFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQ 227 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 3444555557899999999999999999999999999999999998888777776654
No 137
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=39.13 E-value=2.3e+02 Score=23.90 Aligned_cols=54 Identities=13% Similarity=0.231 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 55 KSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAK 108 (121)
Q Consensus 55 ~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~ 108 (121)
-..|+..|-......++-|+-++.--.+|+..-|..|+...+.+++.++.+-..
T Consensus 286 RQeaRarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L~~ 339 (429)
T KOG3651|consen 286 RQEARARFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEILKE 339 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345888899999999999999999999999999999999999999999987653
No 138
>PHA01816 hypothetical protein
Probab=38.22 E-value=22 Score=25.85 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 033343 69 NRTELERLDKERRAD----FLNMLKG-----FVVNQVGYAEKIANVWAKVA 110 (121)
Q Consensus 69 ~~~EieRF~~er~~D----~~~ml~~-----f~~~Q~~~~~~~~~~W~~~~ 110 (121)
..+||+||.+||.+- =..-+-+ |--.--.+++..+++|..|+
T Consensus 4 htsemdrwkkerearke~e~~~~~ndfs~infkfddkdlqeayid~wkhf~ 54 (160)
T PHA01816 4 HTSEMDRWKKEREARKEQEKDLFLNDFSNVNFKFDDKDLQEAYIDTWKHFA 54 (160)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcccccCccccChhHHHHHHHHHHHHhh
Confidence 457899999887542 1222222 33334567888899999885
No 139
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=38.09 E-value=1.3e+02 Score=20.60 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
.+|+..|+..+..++......+.++..+...+
T Consensus 93 ~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l 124 (129)
T cd00584 93 DKKIEELTKQIEKLQKELAKLKDQINTLEAEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777766666554
No 140
>PRK01203 prefoldin subunit alpha; Provisional
Probab=37.75 E-value=1.5e+02 Score=21.42 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 35 KSRIRKIEELKETIRVTEDAKSVAINEYERIKENNR 70 (121)
Q Consensus 35 ~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~ 70 (121)
.+..+|++.|+..+..++..+..-....+.|.+.+.
T Consensus 83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~ 118 (130)
T PRK01203 83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYN 118 (130)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567789999999999999999999988888877663
No 141
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.83 E-value=1.8e+02 Score=21.89 Aligned_cols=22 Identities=9% Similarity=0.424 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 87 MLKGFVVNQVGYAEKIANVWAKVAE 111 (121)
Q Consensus 87 ml~~f~~~Q~~~~~~~~~~W~~~~~ 111 (121)
.|.+|.. .-+.+++.+|+.|..
T Consensus 131 ~~~~y~~---~eh~rll~LWr~v~~ 152 (182)
T PF15035_consen 131 NFNQYLS---SEHSRLLSLWREVVA 152 (182)
T ss_pred HHHhhhc---ccccHHHHHHHHHHH
Confidence 3566655 346779999998864
No 142
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=36.06 E-value=1.3e+02 Score=20.08 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=19.6
Q ss_pred hcccCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 28 SKIFGG---DKSRIRKIEELKETIRVTEDAKSVAINEYERIKE 67 (121)
Q Consensus 28 skl~G~---~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~ 67 (121)
-++.|+ ..+.++=+..|+..+..++..++.....++.+.+
T Consensus 49 y~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~ 91 (105)
T cd00632 49 YKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQE 91 (105)
T ss_pred HHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677 3334444445555555555555544444444443
No 143
>TIGR03824 FlgM_jcvi flagellar biosynthesis anti-sigma factor FlgM. FlgM interacts with and inhibits the alternative sigma factor sigma(28) FliA. The C-terminus of FlgM contains the sigma(28)-binding domain.
Probab=35.99 E-value=49 Score=22.01 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=22.7
Q ss_pred HHHhhhcccCCchhhHHHHHHHHHHHHHHHH
Q 033343 23 LEAASSKIFGGDKSRIRKIEELKETIRVTED 53 (121)
Q Consensus 23 le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~ 53 (121)
|......+-+.|..|.+||++++..|...+=
T Consensus 50 l~~~~~~~~~~p~v~~~kV~~ik~aI~~G~Y 80 (95)
T TIGR03824 50 LQSLEAALASSPDVDAEKVAEIKAAIANGSY 80 (95)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHHcCCC
Confidence 3333455667788999999999999986543
No 144
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.69 E-value=2.8e+02 Score=23.72 Aligned_cols=70 Identities=16% Similarity=0.293 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 033343 48 IRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 117 (121)
Q Consensus 48 I~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~ 117 (121)
.+..+..|..++..|+..+=..-.-|+-+-.-|-.=+--||..|......++++.+.+...|.+-+.+|-
T Consensus 187 FRkaQt~Vr~aK~nfDklkmD~~QKVDLL~AsRcNllSh~Lt~YqteL~~f~~Kta~tf~ti~ea~~~y~ 256 (436)
T KOG3891|consen 187 FRKAQTQVRSAKENFDKLKMDVCQKVDLLGASRCNLLSHVLTTYQTELLEFWSKTARTFETIHEACIGYN 256 (436)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHhHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3445555666888888888888888888888888878888999999999999999999888888877764
No 145
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=35.56 E-value=2.2e+02 Score=22.40 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANV 105 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~ 105 (121)
+|+....+.+-.----..++..|+........=|+=++.-+.+||+.-|.-|.-.-..|...+..+
T Consensus 141 rvetgnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~ 206 (215)
T cd07659 141 RVETGNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHEL 206 (215)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444477888999999999999999999999999999999999999999887765
No 146
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=34.91 E-value=1.1e+02 Score=24.34 Aligned_cols=32 Identities=31% Similarity=0.375 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEY-------ERIKENN 69 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~ey-------e~i~~~~ 69 (121)
...+++.+..|..++..+..++..| |.||+.|
T Consensus 183 ~~~l~~~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISeeI 221 (239)
T PF05276_consen 183 NQQLEEQKEKVEELEAKVKQAKSRYSEALRNLEQISEEI 221 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666 5565554
No 147
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=34.76 E-value=2.1e+02 Score=21.85 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIK-------ENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~-------~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
|+..+..++...+.....+...|..+. ..+-..++.|+.+|..=|+.+|..|+..
T Consensus 158 k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~ 219 (236)
T cd07651 158 KLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANN 219 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554444444444433333333333 3344556677777777777777777654
No 148
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=33.97 E-value=3e+02 Score=23.50 Aligned_cols=60 Identities=17% Similarity=0.160 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERR------ADFLNMLKGFVVNQV 96 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~------~D~~~ml~~f~~~Q~ 96 (121)
-.-+...++..+.....++...+.--++.++...-|+++|++.-. +|-..+|++|+..+.
T Consensus 328 ~nae~a~~qad~q~~~ad~~~Lq~iierlkeelk~e~e~~qe~me~ifamLqavgdtlhnlasvpa 393 (400)
T COG5613 328 LNAEAAQLQADSQLAAADVQNLQRIIERLKEELKLELEKAQEEMENIFAMLQAVGDTLHNLASVPA 393 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCch
Confidence 345666777777777777777777777777777788888877644 344556666665554
No 149
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.91 E-value=2.3e+02 Score=22.13 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
.|+..+.+++.......+.++.+|+.=-..+-.-++.|+++|-.-|+++|..|+..
T Consensus 157 ~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~ 212 (261)
T cd07674 157 LKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHS 212 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666677777777776666667888999999999999999999754
No 150
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=33.59 E-value=1.5e+02 Score=20.03 Aligned_cols=33 Identities=12% Similarity=0.206 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRT 71 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~ 71 (121)
++++.++..|..++...+..+..+.++...++.
T Consensus 74 ~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 74 EKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666555543
No 151
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=32.80 E-value=2.8e+02 Score=22.78 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
-..|++..+..|+.+...+..|.+--+.|+.+| ++=|+.+|.--|.+.+.+ ++.+|....+|
T Consensus 127 ~~~kidkTra~v~~L~tri~Vaiq~v~siS~~I-------~kLRDeEL~PQL~eLi~G-------l~~MWk~M~ec 188 (312)
T PF04782_consen 127 DSSKIDKTRASVKDLHTRIRVAIQSVDSISKRI-------EKLRDEELYPQLVELIQG-------LMRMWKSMLEC 188 (312)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence 447888899999999999999999988888776 455777777777766655 55666666665
No 152
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=32.76 E-value=2.2e+02 Score=22.34 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 46 ETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNM 87 (121)
Q Consensus 46 ~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~m 87 (121)
.+|..+|..+-.--..|..+.+-.+.||.-+..-|..+.+..
T Consensus 86 a~v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~ 127 (219)
T PF06730_consen 86 AEVERLEAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQL 127 (219)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888899999999999999999999999988754
No 153
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=31.41 E-value=37 Score=20.51 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=18.2
Q ss_pred hcccCCchhhHHHHHHHHHHHHHHHHHHH
Q 033343 28 SKIFGGDKSRIRKIEELKETIRVTEDAKS 56 (121)
Q Consensus 28 skl~G~~~~r~~Ki~~l~~eI~~~e~~~e 56 (121)
..+-+.|..|.+|+++++..|....=.++
T Consensus 17 ~~~~~~~~vr~~kV~~ik~~I~~G~Y~vd 45 (57)
T PF04316_consen 17 AALASMPDVRAEKVAEIKAAIASGTYKVD 45 (57)
T ss_dssp ---TGHHHCSHHHHHHHHHHHHTT-----
T ss_pred cccccCchhhHHHHHHHHHHHHcCCCCCC
Confidence 34455688999999999999987654443
No 154
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.00 E-value=2.5e+02 Score=21.62 Aligned_cols=33 Identities=9% Similarity=0.231 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRT 71 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~ 71 (121)
.++..++.++.++++.......++..-+..+.+
T Consensus 93 ~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~ 125 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQ 125 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 445555555555555555554444444433333
No 155
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=30.84 E-value=2.5e+02 Score=21.69 Aligned_cols=45 Identities=27% Similarity=0.214 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 41 IEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLK 89 (121)
Q Consensus 41 i~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~ 89 (121)
++.+...+..++.++..+..+|..+.+.+ ++...++..+|...+-
T Consensus 173 ~~Kl~~k~~ka~~~~~k~e~~y~~~~~~l----~~~~~~~~~~~~~~~~ 217 (239)
T cd07658 173 DEKLEAKRKKGEESRLKAENEYYTCCVRL----ERLRLEWESALRKGLN 217 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33455555556666666666665544332 3344444444444433
No 156
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=30.82 E-value=2.6e+02 Score=21.89 Aligned_cols=41 Identities=15% Similarity=0.220 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 71 TELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 71 ~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
.|.++|. .|..|+-.-+..|-..-++|..++++-|......
T Consensus 125 ~e~~k~~-~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~ 165 (225)
T KOG4848|consen 125 KEPEKFT-FREAEIAKNMKKYPQTLAKYEASLVKQEQEADAK 165 (225)
T ss_pred hhHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHH
Confidence 5778887 8999999999999999999999999999876553
No 157
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.79 E-value=4e+02 Score=24.01 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=44.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 033343 34 DKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNR------TELERLDKERRADFLNML 88 (121)
Q Consensus 34 ~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~------~EieRF~~er~~D~~~ml 88 (121)
....+.+++.++.+|.+-|...+..+.+-++++.-+. .||+|-+.||..+.+.+.
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~ 349 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN 349 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3558889999999999999999988888877776654 688888888888776653
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.50 E-value=2.3e+02 Score=22.36 Aligned_cols=36 Identities=6% Similarity=0.094 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTEL 73 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~Ei 73 (121)
...++.|+.+|..+...+|+..-+.+.+.++-+.=.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y 95 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIY 95 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 468888889999999999998888888888877633
No 159
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=30.22 E-value=1.5e+02 Score=19.02 Aligned_cols=10 Identities=50% Similarity=0.664 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 033343 71 TELERLDKER 80 (121)
Q Consensus 71 ~EieRF~~er 80 (121)
.|.++++.++
T Consensus 46 ~en~~L~~e~ 55 (72)
T PF06005_consen 46 EENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3445555443
No 160
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=30.08 E-value=2.4e+02 Score=25.22 Aligned_cols=54 Identities=20% Similarity=0.144 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 50 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIA 103 (121)
Q Consensus 50 ~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~ 103 (121)
++..++..-+.+|+.++..+++||+-+=+.|-..++..-..+...+-.+-+...
T Consensus 246 eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~ 299 (546)
T KOG0977|consen 246 ELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELR 299 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHH
Confidence 456677788899999999999999999999988888655555555444444443
No 161
>PRK14143 heat shock protein GrpE; Provisional
Probab=29.35 E-value=2.9e+02 Score=21.85 Aligned_cols=58 Identities=9% Similarity=0.185 Sum_probs=36.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q 033343 36 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADF----LNMLKGFVVNQVG 97 (121)
Q Consensus 36 ~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~----~~ml~~f~~~Q~~ 97 (121)
.-...+..|+.+|..++..++..+..|-+ +.-|++.|.+--.+|. ....-+|+...+-
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR----~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLp 125 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMR----IAADFDNFRKRTSREQEDLRLQLKCNTLSEILP 125 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888999998888888887777754 4555555555544444 3344444444433
No 162
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=29.21 E-value=2e+02 Score=24.44 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHH
Q 033343 43 ELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADF-------------------------LNMLKGFVVNQVG 97 (121)
Q Consensus 43 ~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~-------------------------~~ml~~f~~~Q~~ 97 (121)
.+=+.=++|+++++.|++=-..=.+.++.||.-|-+|-..-. .+|+.+=+..+-.
T Consensus 149 ~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g 228 (389)
T COG2956 149 NIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKG 228 (389)
T ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc
Confidence 333455789999999987666666778888888876643221 2466777778888
Q ss_pred HHHHHHHHHHHHHHHhcch
Q 033343 98 YAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 98 ~~~~~~~~W~~~~~e~~~~ 116 (121)
.+++.+..|+.|.++=-.|
T Consensus 229 ~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 229 DYQKAVEALERVLEQNPEY 247 (389)
T ss_pred chHHHHHHHHHHHHhChHH
Confidence 8999999999998765444
No 163
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=29.16 E-value=2.2e+02 Score=20.34 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
|++.|+-.|..++.+-+..+.+|+.+...+
T Consensus 78 r~E~Le~ri~tLekQe~~l~e~l~eLq~~i 107 (119)
T COG1382 78 RKETLELRIKTLEKQEEKLQERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444455555544444
No 164
>PRK14154 heat shock protein GrpE; Provisional
Probab=29.06 E-value=2.8e+02 Score=21.57 Aligned_cols=67 Identities=13% Similarity=0.132 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANV 105 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~ 105 (121)
-.++.|+.+|..+++.++..+..|-+.....-.=-.|.++++..=......+|+...+-....+-.+
T Consensus 52 ~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~a~e~~~~~LLpVlDnLeRA 118 (208)
T PRK14154 52 PSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKFGSKQLITDLLPVADSLIHG 118 (208)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH
Confidence 3678888999999998888877775544433333334445555555555555655555444444333
No 165
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=29.00 E-value=2.6e+02 Score=21.33 Aligned_cols=75 Identities=13% Similarity=0.155 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 36 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 36 ~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
....++..++..|......++..+...+...+.+..--..+. +..+.......++..........-..|..+...
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS--ASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777766666665 445555666666665555555555555554433
No 166
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.90 E-value=1.4e+02 Score=17.96 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 41 IEELKETIRVTEDAKSVAINEYERIKEN 68 (121)
Q Consensus 41 i~~l~~eI~~~e~~~e~a~~eye~i~~~ 68 (121)
+..|++.++.++.++...+..|...++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa 28 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKA 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888777766654
No 167
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=28.83 E-value=2.2e+02 Score=20.32 Aligned_cols=53 Identities=30% Similarity=0.379 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 95 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q 95 (121)
+|+.+++.++...+.. +..+.+.|.+....++..++.+. ..|-..|..|+..+
T Consensus 10 ~ki~~l~~~~~~i~~~---~~~~I~~i~~~~~~~~~~l~~~i-~~l~~~l~~y~e~~ 62 (149)
T PF07352_consen 10 RKIAELQREIARIEAE---ANDEIARIKEWYEAEIAPLQNRI-EYLEGLLQAYAEAN 62 (149)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC
Confidence 5666666666666654 35556666666666666666543 34556666666544
No 168
>PRK14155 heat shock protein GrpE; Provisional
Probab=28.74 E-value=2.8e+02 Score=21.47 Aligned_cols=67 Identities=10% Similarity=0.170 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANV 105 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~ 105 (121)
.-.+.++.+|..++..+...+..|-+.....-.=-.|.++++..-....+.+|+...+-....+-.+
T Consensus 13 ~~~~~l~~~l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~~~~~~~LLpV~DnLerA 79 (208)
T PRK14155 13 FEADDAAQEIEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAYAIQKFARDLLGAADNLGRA 79 (208)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhHHHH
Confidence 4447888888888888888877776666555555566666776666667777777665555444433
No 169
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=28.66 E-value=3e+02 Score=21.89 Aligned_cols=55 Identities=9% Similarity=0.217 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTE--------------LERLDKERRADFLNMLKGFV 92 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~E--------------ieRF~~er~~D~~~ml~~f~ 92 (121)
.+.++-++..+......++.++.+|+...+..... ++.++.+|-.-|+++|.++-
T Consensus 167 ~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~ 235 (258)
T cd07680 167 PEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIK 235 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777788888888888887777665543 44556678888888888775
No 170
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=28.01 E-value=3e+02 Score=21.59 Aligned_cols=45 Identities=20% Similarity=0.181 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 50 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 50 ~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
++..++...+.+|+.+...++.|++-+=..+-.++..........
T Consensus 166 dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~ 210 (312)
T PF00038_consen 166 DLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEE 210 (312)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccc
Confidence 356667778899999999999999999999988887766554333
No 171
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=27.93 E-value=3.1e+02 Score=21.81 Aligned_cols=64 Identities=17% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 42 EELKETIRVTEDAKSVAINEYE---------------RIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANV 105 (121)
Q Consensus 42 ~~l~~eI~~~e~~~e~a~~eye---------------~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~ 105 (121)
+-++.....-....+.++.+|. +-.-.+...++.|++.|...|++++..|+..--.....+.+.
T Consensus 165 eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~~l~e~~~~~~~~E~~v~~~i~~c 243 (252)
T cd07675 165 EKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIYKQLQEMDERRTVKLSECYRGFADSERKVIPIISKC 243 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455555555555566665553 334455677889999999999999999999887776654443
No 172
>PTZ00491 major vault protein; Provisional
Probab=27.72 E-value=5.3e+02 Score=24.41 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=46.5
Q ss_pred HHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 22 KLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADF 84 (121)
Q Consensus 22 ~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~ 84 (121)
.|++.|+-+--.+.++.+-...++...-+.+.++++|+-.-+-..-.+..|+++.++.|..++
T Consensus 703 el~a~s~aves~g~a~a~a~a~aea~~ie~e~~v~~a~lra~a~~i~~~ael~~~~~~~~~e~ 765 (850)
T PTZ00491 703 ELQAESAAVESSGQSRAEALAEAEARLIEAEAEVEQAELRAKALRIEAEAELEKLRKRQELEL 765 (850)
T ss_pred HHHhHHHHHhhcchHHHHHHHHHHHHhhhhhhHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444334455777777777778888899999998888888888889999888887765
No 173
>PRK14011 prefoldin subunit alpha; Provisional
Probab=27.63 E-value=2.4e+02 Score=20.47 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
.+|++.|+..+..+...++.-..+...|...+..-++..
T Consensus 94 ~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~~ 132 (144)
T PRK14011 94 KKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQAI 132 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777777777777766666554
No 174
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=27.05 E-value=1.9e+02 Score=22.95 Aligned_cols=34 Identities=15% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 41 IEELKETIRVTEDAKSVAINEYERIKENNRTELE 74 (121)
Q Consensus 41 i~~l~~eI~~~e~~~e~a~~eye~i~~~~~~Eie 74 (121)
|..|+..|++|...+....++|..--+++|.||.
T Consensus 99 I~pLe~k~E~wkk~~~~ldKd~~k~~kk~R~elK 132 (231)
T cd07643 99 VNPLQEKIEEWKKVANQLDKDHAKEYKKARQEIK 132 (231)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899999998888888777788888877
No 175
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=26.16 E-value=2.7e+02 Score=20.46 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFL 85 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~ 85 (121)
|.+=..--+.++.......+..+.+++.+...++.||...+.+=+.||.
T Consensus 64 r~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n 112 (177)
T PF07798_consen 64 RSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLN 112 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455566667777778888888888888888877775555543
No 176
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=25.73 E-value=3.1e+02 Score=25.14 Aligned_cols=79 Identities=20% Similarity=0.246 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH------HHHHH------HHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYE----------RIKENNRTELERLDKERRA------DFLNM------LKGFVVNQ 95 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye----------~i~~~~~~EieRF~~er~~------D~~~m------l~~f~~~Q 95 (121)
..||-+|+++|..+.+....|+++|. .=+..-|.||.|.--+|.+ +|.+. +..-=..|
T Consensus 356 ee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavrWTEMiRAsre~p 435 (832)
T KOG2077|consen 356 EEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVRWTEMIRASRENP 435 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhcCc
Confidence 36888888999988888888888763 2355667888887766653 33322 22222222
Q ss_pred HHHHHHHHHHHHHHHHHhcch
Q 033343 96 VGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 96 ~~~~~~~~~~W~~~~~e~~~~ 116 (121)
.--.++--.+|.=|..-|+..
T Consensus 436 ~vqeKK~s~IWqFFSrLfssS 456 (832)
T KOG2077|consen 436 AVQEKKRSSIWQFFSRLFSSS 456 (832)
T ss_pred hhhhhccccHHHHHHHHhcCC
Confidence 222355566787666655543
No 177
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=25.65 E-value=1.8e+02 Score=18.32 Aligned_cols=30 Identities=33% Similarity=0.379 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKEN 68 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~ 68 (121)
+-++.|+..|.+++....+.+.|-...+..
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 347889999999999988888887666554
No 178
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=25.58 E-value=2.1e+02 Score=18.99 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIK 66 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~ 66 (121)
.|+++|+.+++.+...+..|+.+-.+-+
T Consensus 39 Akv~qLe~dv~a~~~~~qAAk~eaarAn 66 (78)
T COG4238 39 AKVDQLENDVNAMRSDVQAAKDEAARAN 66 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4555555555555555555555444433
No 179
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.53 E-value=1.1e+02 Score=15.73 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033343 41 IEELKETIRVTEDAKSVAI 59 (121)
Q Consensus 41 i~~l~~eI~~~e~~~e~a~ 59 (121)
+..++..|.++|.++..+.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4556677777777766654
No 180
>COG2317 Zn-dependent carboxypeptidase [Amino acid transport and metabolism]
Probab=25.42 E-value=4.5e+02 Score=23.24 Aligned_cols=63 Identities=14% Similarity=0.171 Sum_probs=40.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 48 IRVTEDA-KSVAINEYERIKENNRTELE-----------RLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVA 110 (121)
Q Consensus 48 I~~~e~~-~e~a~~eye~i~~~~~~Eie-----------RF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~ 110 (121)
+.+.+.. +..++++|+.-+..=-++++ =|...|.++=-+.|.-|.+.-+.+.++.+++|....
T Consensus 76 L~e~~~~~vre~~r~~~~~~~iP~e~~~e~s~~~s~a~~aWreAr~knDf~~F~p~Lekiv~l~re~A~~~~~~~ 150 (497)
T COG2317 76 LSEIEAGVVRELKREYEKAKKIPEELVKEYSKLTSKAEHAWREAREKNDFSIFKPYLEKIVELKREFAEYRGYEE 150 (497)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhhcccHhhhhHHHHHHHHHHHHHHHhccccc
Confidence 4444444 55566655544433333333 355667766677888888888899999988886543
No 181
>PRK09039 hypothetical protein; Validated
Probab=25.35 E-value=2.9e+02 Score=22.72 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 91 FVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 91 f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
|..+...+.......+..+++.+..
T Consensus 228 F~~gsa~L~~~~~~~L~~ia~~l~~ 252 (343)
T PRK09039 228 FPTGSAELNPEGQAEIAKLAAALIE 252 (343)
T ss_pred eCCCCcccCHHHHHHHHHHHHHHHH
Confidence 4444444555555555555555544
No 182
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.34 E-value=5.4e+02 Score=23.70 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=0.0
Q ss_pred hHHHHHHHH-------HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 10 DRSSALLTM-------RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRA 82 (121)
Q Consensus 10 dR~~al~~~-------~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~ 82 (121)
+|+..++.- -+++|+.....+-..-..=.....+++.....++...+..+.+.+.+.+..+.|..++-++=..
T Consensus 500 ~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~ 579 (771)
T TIGR01069 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKK 579 (771)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 033343 83 DFLNMLKGF 91 (121)
Q Consensus 83 D~~~ml~~f 91 (121)
+..+++...
T Consensus 580 ~~~~~i~~l 588 (771)
T TIGR01069 580 EVESIIREL 588 (771)
T ss_pred HHHHHHHHH
No 183
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=24.62 E-value=4e+02 Score=21.97 Aligned_cols=88 Identities=20% Similarity=0.259 Sum_probs=61.3
Q ss_pred HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---H--HHHHHHHH
Q 033343 20 AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKEN---NRTELERLDKERRA---D--FLNMLKGF 91 (121)
Q Consensus 20 ~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~---~~~EieRF~~er~~---D--~~~ml~~f 91 (121)
|..||....||.---..|.=-++.|+..+......++..+.+|..++.. .++..+..++.|.. | .++.-++|
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~ 99 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNF 99 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 5666666666662223344457778888888888888888888777764 45566666666643 3 46788999
Q ss_pred HHHHHHHHHHHHHHHH
Q 033343 92 VVNQVGYAEKIANVWA 107 (121)
Q Consensus 92 ~~~Q~~~~~~~~~~W~ 107 (121)
..+|...+++.+..-+
T Consensus 100 lEgQl~s~Kkqie~Le 115 (307)
T PF10481_consen 100 LEGQLNSCKKQIEKLE 115 (307)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988765443
No 184
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=24.54 E-value=3.7e+02 Score=21.55 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=44.0
Q ss_pred HHHHHHhhhc-ccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 20 AEKLEAASSK-IFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 77 (121)
Q Consensus 20 ~~~le~~~sk-l~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~ 77 (121)
+++|+...+. ...++..+.++...++..|..+......-...++.+.+....|-..|=
T Consensus 33 i~~L~~~i~~~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf 91 (298)
T PF11262_consen 33 IERLEKEISQMSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWF 91 (298)
T ss_pred HHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4555554433 111234466788999999999999999999999999999999999887
No 185
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=24.31 E-value=2.2e+02 Score=18.93 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
+|+..++..+..+.......+.++..+...+
T Consensus 84 ~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l 114 (120)
T PF02996_consen 84 KRIKELEEQLEKLEKELAELQAQIEQLEQTL 114 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666665555544
No 186
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.24 E-value=1.9e+02 Score=21.66 Aligned_cols=21 Identities=48% Similarity=0.610 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033343 66 KENNRTELERLDKERRADFLNM 87 (121)
Q Consensus 66 ~~~~~~EieRF~~er~~D~~~m 87 (121)
+++.+.|++|+..|-+ ||+.=
T Consensus 26 KE~L~~~~QRLkDE~R-DLKqE 46 (166)
T PF04880_consen 26 KENLREEVQRLKDELR-DLKQE 46 (166)
T ss_dssp HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHHH-HHHHH
Confidence 5566666666665533 44443
No 187
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.08 E-value=2.8e+02 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKE 67 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~ 67 (121)
+++.|+.++..++......+.+|+.+..
T Consensus 119 ~~e~Le~e~~~L~~~~~~~~eDY~~L~~ 146 (161)
T TIGR02894 119 RNEELEKELEKLRQRLSTIEEDYQTLID 146 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555666655444
No 188
>PRK14163 heat shock protein GrpE; Provisional
Probab=23.22 E-value=3.7e+02 Score=21.00 Aligned_cols=62 Identities=8% Similarity=0.138 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 41 IEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKI 102 (121)
Q Consensus 41 i~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~ 102 (121)
.+.|+.+|..++..+...+..|-+....+-.=-.|.++++..-....+.+|+...+-....+
T Consensus 42 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnL 103 (214)
T PRK14163 42 TAGLTAQLDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDV 103 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHH
Confidence 57788888888888888887776666655555566677777777777777777776544444
No 189
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=23.21 E-value=1.7e+02 Score=18.28 Aligned_cols=20 Identities=25% Similarity=0.204 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVA 58 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a 58 (121)
.+|..|+.||..++......
T Consensus 28 ~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 28 ERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777777777766665543
No 190
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=23.20 E-value=4.3e+02 Score=23.92 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=31.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 35 KSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 35 ~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
..+.+.+.+++.+|.+++...+..+.+...+.+....++..+
T Consensus 225 ~~p~e~~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~l~~~ 266 (759)
T PF01496_consen 225 GTPEEAIKELEEEIEELEKELEELEEELKKLLEKYAEELEAW 266 (759)
T ss_dssp GG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888999999988888888888887777766665543
No 191
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=23.19 E-value=2.4e+02 Score=18.91 Aligned_cols=36 Identities=25% Similarity=0.276 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTE 72 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~E 72 (121)
|.+++...-.+........+....+|+......+.|
T Consensus 31 R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~e 66 (132)
T PF00430_consen 31 RKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREE 66 (132)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433333333333333333333333333333
No 192
>PF12107 VEK-30: Plasminogen (Pg) ligand in fibrinolytic pathway; InterPro: IPR021965 Pg is an important mediator of angiostatin production in the fibrinolytic pathway. Pg is made up of five subunit kringle molecules (Pg-K1 to Pg-K5), of which the first three make the protein angiostatin. VEK-30 is a domain of the group A streptococcal protein PAM. It binds to Pg-K2 of angiostatin and activates the molecule to mediate its anti-angiogenic effects. VEK-30 binds to angiostatin via a C-terminal lysine with argininyl and glutamyl side chain residues known as a 'through space isostere' [].; PDB: 2KJ4_B 2DOI_B 2DOH_C 1I5K_D.
Probab=22.40 E-value=81 Score=15.05 Aligned_cols=12 Identities=58% Similarity=0.844 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHH
Q 033343 71 TELERLDKERRA 82 (121)
Q Consensus 71 ~EieRF~~er~~ 82 (121)
-|++|++.||..
T Consensus 3 aeLerLknerH~ 14 (17)
T PF12107_consen 3 AELERLKNERHD 14 (17)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 478888888753
No 193
>PRK14162 heat shock protein GrpE; Provisional
Probab=22.23 E-value=3.6e+02 Score=20.61 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYA 99 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~ 99 (121)
-...+..|+.+|..++..++..+..|-+.....-.=-.|..+++..-......+|+...+-..
T Consensus 37 ~~~e~~~l~~~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpV~ 99 (194)
T PRK14162 37 KQNPVEDLEKEIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKYESQSLAKDVLPAM 99 (194)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 456778888888888888888777775554444443344455555444445555555444333
No 194
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=21.91 E-value=4.7e+02 Score=26.26 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=19.2
Q ss_pred HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 20 AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEY 62 (121)
Q Consensus 20 ~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~ey 62 (121)
+++|....++|+++--.+.+.+..|+.+....+.+++.-..+.
T Consensus 1691 Ae~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL 1733 (1758)
T KOG0994|consen 1691 AEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAEL 1733 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 3444444445554444444444455444444444444433333
No 195
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=21.86 E-value=2.7e+02 Score=18.93 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKE 67 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~ 67 (121)
-++-++-++..+..++...+.....+..+.+
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~ 114 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELAS 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433
No 196
>PRK00106 hypothetical protein; Provisional
Probab=21.66 E-value=5.7e+02 Score=22.67 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 36 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 36 ~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
.+..++...+.++...+..++.-+.+++.+.+....++++.-.==..+-+.+|..=+..
T Consensus 122 krE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~a~lt~~eak~~l~~~~~~ 180 (535)
T PRK00106 122 SKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALSQAEAREIILAETEN 180 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 35556666666677777777777777777777777777665433333333444433333
No 197
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=21.65 E-value=2.8e+02 Score=19.07 Aligned_cols=13 Identities=31% Similarity=0.312 Sum_probs=6.6
Q ss_pred HHHHhHHHHHHHH
Q 033343 6 SAFTDRSSALLTM 18 (121)
Q Consensus 6 ~a~~dR~~al~~~ 18 (121)
.+|..|..|.-.+
T Consensus 52 ~~f~krE~A~E~~ 64 (100)
T PF04568_consen 52 GAFGKREAAQEEQ 64 (100)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CccchHHHhhHHH
Confidence 4555555554443
No 198
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=21.55 E-value=4.5e+02 Score=21.45 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEK 101 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~ 101 (121)
+-..|+.+|+.+|...+..+.|...--.-...+|.+ |.+-|+.-|.+=....+..+++
T Consensus 12 rk~~Lq~eIe~LerR~~ri~~EmrtsFaG~Sq~lA~----RVqGFkdYLvGsLQDLa~saEq 69 (283)
T PF11285_consen 12 RKQALQIEIEQLERRRERIEKEMRTSFAGQSQDLAI----RVQGFKDYLVGSLQDLAQSAEQ 69 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHH----HHhhhHHHHHHHHHHHHHHHHh
Confidence 444566666666666665555543333333334433 4555555555555555544443
No 199
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=21.53 E-value=3.1e+02 Score=19.59 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 77 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~ 77 (121)
-+..|+.+|...+...+.-......+.+++...-..+.
T Consensus 42 ~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 42 QLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666555554444433
No 200
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=21.44 E-value=4.1e+02 Score=25.76 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 35 KSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERR 81 (121)
Q Consensus 35 ~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~ 81 (121)
.......++++.++..++.........|+.....+.+|+++++....
T Consensus 751 e~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~ 797 (1074)
T KOG0250|consen 751 EEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKE 797 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
No 201
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=21.39 E-value=3e+02 Score=19.32 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=31.1
Q ss_pred HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 20 AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEY 62 (121)
Q Consensus 20 ~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~ey 62 (121)
.+.|+.....|.++-.++..++.+|+..|.++...++.-+.-+
T Consensus 39 kd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak 81 (107)
T PF09304_consen 39 KDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777778888888888888888777777644433
No 202
>smart00338 BRLZ basic region leucin zipper.
Probab=21.08 E-value=2.1e+02 Score=17.34 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERI 65 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i 65 (121)
++..|+.+...+...+.....++..+
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333
No 203
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.02 E-value=3.4e+02 Score=20.55 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 42 EELKETIRVTEDAKSVAINEYERIKENNRTELERLDK 78 (121)
Q Consensus 42 ~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~ 78 (121)
.+|..+...+..+++..+.+.+.=.+.+..||++.+.
T Consensus 105 qeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~ 141 (171)
T PF04799_consen 105 QELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEE 141 (171)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777777776666666667666653
No 204
>PRK09343 prefoldin subunit beta; Provisional
Probab=20.92 E-value=3e+02 Score=19.12 Aligned_cols=33 Identities=12% Similarity=0.120 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRT 71 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~ 71 (121)
.|++-++..|..++...+..+..+.+.-..+++
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666555543
No 205
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.87 E-value=2.8e+02 Score=18.86 Aligned_cols=35 Identities=6% Similarity=0.122 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDK 78 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~ 78 (121)
...+++.++.+++...+..+.+- +....||++++.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n----~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARN----DQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhC
Confidence 44455555555555555444443 233455556554
No 206
>KOG2856 consensus Adaptor protein PACSIN [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=20.86 E-value=5.3e+02 Score=22.37 Aligned_cols=52 Identities=13% Similarity=0.293 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTEL-------ERLDKERRADFLNMLKG 90 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~Ei-------eRF~~er~~D~~~ml~~ 90 (121)
+|++.++.++..+...-+....+...-+-.-++.| +-|++.|-.=|+.||..
T Consensus 184 drveK~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~ 242 (472)
T KOG2856|consen 184 DRVEKCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLK 242 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555444444445555 35777888878888765
No 207
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=20.84 E-value=3e+02 Score=19.13 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNR 70 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~ 70 (121)
+|++.|...+..++..+...+++++.+...+.
T Consensus 101 ~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 101 KRKEELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544443
No 208
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=20.82 E-value=2.3e+02 Score=17.80 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 45 KETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 45 ~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+..|..++..+.=.+++........-.||+|+++.
T Consensus 2 ~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~ 36 (60)
T PF14916_consen 2 EQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKR 36 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777788888888888889999998764
No 209
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=20.72 E-value=3.5e+02 Score=19.82 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 55 KSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 93 (121)
Q Consensus 55 ~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~ 93 (121)
...++.+-+.+.+..+.+|+.-..+=..+++..+.+.+.
T Consensus 114 ~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~ 152 (184)
T PRK13455 114 KADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAV 152 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555555555555544444443
No 210
>PRK14139 heat shock protein GrpE; Provisional
Probab=20.62 E-value=3.9e+02 Score=20.30 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKI 102 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~ 102 (121)
..-+..++.+|..++..+...+..|-+....+-.=-.|.++|+..=......+|+...+-....+
T Consensus 31 ~~e~~~l~~~l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~a~~~~~~~LLpv~DnL 95 (185)
T PRK14139 31 EDAAPALEAELAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKFAIESFAESLLPVKDSL 95 (185)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 35567777888888888877777776555555555555566666655566666666655444444
No 211
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=20.54 E-value=4.2e+02 Score=20.72 Aligned_cols=79 Identities=11% Similarity=0.135 Sum_probs=39.1
Q ss_pred HHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 4 VRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVT-EDAKSVAINEYERIKENNRTELERLDKER 80 (121)
Q Consensus 4 Vk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~-e~~~e~a~~eye~i~~~~~~EieRF~~er 80 (121)
|..+|.+|.+....- .+++......++. .....++..++.+..+. +.+...|..+.+++.+..+.|.++...+.
T Consensus 30 i~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~---~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a 106 (250)
T PRK14474 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEA---ERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEW 106 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777764444 1111111111111 22334455554444432 34455566666666666666666666655
Q ss_pred HHHHH
Q 033343 81 RADFL 85 (121)
Q Consensus 81 ~~D~~ 85 (121)
..++.
T Consensus 107 ~~~ie 111 (250)
T PRK14474 107 LEQLE 111 (250)
T ss_pred HHHHH
Confidence 54443
No 212
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.51 E-value=97 Score=27.21 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 35 KSRIRKIEELKETIRVTEDAKSVAINE 61 (121)
Q Consensus 35 ~~r~~Ki~~l~~eI~~~e~~~e~a~~e 61 (121)
....+||++|+.+|.+++++++...+.
T Consensus 27 ~~~~qkie~L~kql~~Lk~q~~~l~~~ 53 (489)
T PF11853_consen 27 IDLLQKIEALKKQLEELKAQQDDLNDR 53 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 334558888888888888887744443
No 213
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.29 E-value=2.3e+02 Score=17.54 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
.++..++..|...+...+......+.|.+++
T Consensus 7 n~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 7 NELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666666666666666666665
No 214
>PF08725 Integrin_b_cyt: Integrin beta cytoplasmic domain; InterPro: IPR014836 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. This entry represents the cytoplasmic domain of integrin beta subunits. ; GO: 0004872 receptor activity, 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion, 0007229 integrin-mediated signaling pathway, 0008305 integrin complex; PDB: 3G9W_C 2JF1_T 2BRQ_D 1MK9_E 1KUZ_B 2LJF_A 1MK7_C 2RN0_A 1M8O_B 2LJE_A ....
Probab=20.28 E-value=48 Score=19.70 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHH
Q 033343 70 RTELERLDKERRA 82 (121)
Q Consensus 70 ~~EieRF~~er~~ 82 (121)
+.|+.+|++|+..
T Consensus 9 rrEy~kFe~E~~~ 21 (47)
T PF08725_consen 9 RREYAKFEKERKK 21 (47)
T ss_dssp HCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5688999998864
No 215
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=20.22 E-value=2.8e+02 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 46 ETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 46 ~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
.+|+++..++..+..+-++--...++.+.|++.+
T Consensus 84 edId~l~~~i~~~~~~~~~~~~~~r~~~~~l~~~ 117 (122)
T TIGR03166 84 TELEELEEAVRQEFLTLDEQERSARSAMARLESD 117 (122)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666666777777777654
No 216
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=20.19 E-value=4.1e+02 Score=21.03 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELE 74 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~Eie 74 (121)
.|..+||.+++.....+...+.+.+.+...|.+=+|
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYE 128 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSLRREVESLRADNVKLYE 128 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999888865433
No 217
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=20.14 E-value=3.8e+02 Score=21.22 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELE 74 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~Eie 74 (121)
+++...-.+|+.+|..++.|+..|..+.......|.
T Consensus 14 e~LN~atd~IN~lE~~L~~ar~~fr~~l~e~~~kL~ 49 (239)
T PF05276_consen 14 EKLNQATDEINRLENELDEARATFRRLLSESTKKLN 49 (239)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888889999999999999998777665554443
Done!