Query 033343
Match_columns 121
No_of_seqs 95 out of 97
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 21:17:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033343.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033343hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dyt_A Sorting nexin-9; 3-heli 99.5 7.1E-14 2.4E-18 113.2 12.2 92 2-114 272-364 (366)
2 4akv_A Sorting nexin-33; trans 99.5 5.5E-13 1.9E-17 109.0 13.2 92 2-114 292-384 (386)
3 2fic_A Bridging integrator 1; 98.9 5.1E-08 1.8E-12 74.1 13.3 105 2-117 144-250 (251)
4 1uru_A Amphiphysin; endocytosi 98.8 8.7E-08 3E-12 72.0 11.1 107 2-120 129-240 (244)
5 4avm_A Bridging integrator 2; 97.6 0.0033 1.1E-07 47.8 14.5 106 2-118 125-232 (237)
6 4a3a_A Amphiphysin; structural 97.3 0.018 6.2E-07 44.0 15.1 105 2-117 130-236 (243)
7 1zww_A SH3-containing GRB2-lik 97.1 0.0033 1.1E-07 48.0 9.2 65 51-116 179-243 (256)
8 2z0v_A SH3-containing GRB2-lik 96.8 0.0095 3.3E-07 45.1 9.1 64 52-116 164-227 (240)
9 2q12_A DIP13 alpha, DCC-intera 96.0 0.035 1.2E-06 42.1 8.4 91 21-116 138-229 (265)
10 2q13_A DCC-interacting protein 95.9 0.065 2.2E-06 42.6 10.0 90 21-115 138-228 (385)
11 4h8s_A DCC-interacting protein 90.2 3.3 0.00011 32.8 10.6 58 50-107 185-242 (407)
12 2v0o_A FCHO2, FCH domain only 89.4 5.1 0.00018 29.5 12.5 74 39-112 170-243 (276)
13 2efl_A Formin-binding protein 88.2 6.5 0.00022 29.3 11.4 56 60-115 208-263 (305)
14 4ani_A Protein GRPE; chaperone 86.7 5.1 0.00018 30.1 8.9 51 38-88 65-115 (213)
15 2efk_A CDC42-interacting prote 84.6 11 0.00036 28.2 12.2 54 62-115 203-256 (301)
16 3aco_A Pacsin2, protein kinase 84.5 9.9 0.00034 29.4 10.0 51 44-94 211-261 (350)
17 2x3v_A Syndapin I, protein kin 83.0 9.5 0.00033 29.2 9.2 53 42-94 200-252 (337)
18 1i4d_A Arfaptin 2, partner of 81.4 15 0.00052 27.7 9.7 65 50-114 143-207 (224)
19 3i2w_A Syndapin, LD46328P; EFC 80.0 15 0.00052 27.4 9.3 57 38-94 183-239 (290)
20 3abh_A Pacsin2, protein kinase 78.2 20 0.00067 27.1 9.6 57 38-94 205-261 (312)
21 2dnx_A Syntaxin-12; snare, HAB 77.9 14 0.00047 25.2 8.7 64 39-102 51-118 (130)
22 3haj_A Human pacsin2 F-BAR; pa 77.5 10 0.00034 31.1 8.0 53 43-95 203-255 (486)
23 3m3w_A Pacsin3, protein kinase 76.1 24 0.00082 27.1 9.5 56 38-93 196-251 (320)
24 2z5i_A TM, general control pro 71.2 13 0.00045 21.7 5.8 33 39-71 12-44 (52)
25 1dkg_A Nucleotide exchange fac 71.2 15 0.00051 27.0 6.9 52 38-89 41-96 (197)
26 1x79_B RAB GTPase binding effe 70.4 22 0.00076 24.1 7.4 46 37-82 43-88 (112)
27 3qwe_A GMIP, GEM-interacting p 67.7 41 0.0014 26.1 12.1 78 39-116 184-261 (279)
28 3qf7_D MRE11; ABC-ATPase, ATPa 63.4 5.8 0.0002 22.9 2.5 34 82-115 7-40 (50)
29 3trt_A Vimentin; cytoskeleton, 62.7 23 0.0008 21.6 9.7 39 53-91 9-47 (77)
30 3mov_A Lamin-B1; LMNB1, B-type 61.7 30 0.001 22.5 7.6 56 36-91 9-67 (95)
31 3l32_A Phosphoprotein; antipar 61.1 5.3 0.00018 23.0 2.1 36 83-118 7-42 (45)
32 1jcd_A Major outer membrane li 60.7 23 0.00079 20.8 5.5 31 39-69 18-48 (52)
33 2jee_A YIIU; FTSZ, septum, coi 58.5 33 0.0011 22.0 7.2 43 39-81 20-65 (81)
34 3he5_B Synzip2; heterodimeric 55.5 27 0.00093 20.0 5.5 37 39-79 10-46 (52)
35 2efr_A General control protein 53.3 58 0.002 23.1 7.9 8 86-93 130-137 (155)
36 2b9c_A Striated-muscle alpha t 52.3 51 0.0017 23.0 6.5 41 37-77 50-93 (147)
37 2etd_A LEMA protein; bromodoma 43.6 29 0.00098 24.9 4.2 38 40-77 104-141 (171)
38 3g9w_C Integrin beta-1D; prote 43.4 11 0.00036 22.2 1.5 13 70-82 11-23 (52)
39 3mq7_A Bone marrow stromal ant 43.1 57 0.002 22.4 5.3 32 38-69 70-101 (121)
40 4etp_A Kinesin-like protein KA 43.1 1.2E+02 0.0041 24.3 8.2 36 37-72 8-43 (403)
41 1gmj_A ATPase inhibitor; coile 41.2 70 0.0024 20.6 8.2 54 6-66 20-78 (84)
42 2yy0_A C-MYC-binding protein; 38.5 58 0.002 18.9 4.7 32 38-69 18-49 (53)
43 2zqm_A Prefoldin beta subunit 37.9 78 0.0027 20.2 5.8 32 39-70 77-108 (117)
44 3a6m_A Protein GRPE, HSP-70 co 36.9 5.3 0.00018 29.0 -0.7 51 40-90 27-77 (177)
45 2knc_B Integrin beta-3; transm 36.1 22 0.00074 22.5 2.2 13 70-82 41-53 (79)
46 4dyl_A Tyrosine-protein kinase 34.8 1.7E+02 0.0057 23.1 11.7 58 39-96 164-236 (406)
47 3mq9_A Bone marrow stromal ant 34.2 1.1E+02 0.0039 24.1 6.7 27 39-65 443-469 (471)
48 3u1c_A Tropomyosin alpha-1 cha 34.1 95 0.0032 20.1 7.2 31 39-69 23-53 (101)
49 1hs7_A Syntaxin VAM3; UP-and-D 33.8 99 0.0034 20.2 6.1 50 39-102 40-91 (97)
50 1s4x_A Integrin beta-3; cell a 32.6 24 0.00081 21.8 1.9 12 70-81 29-40 (67)
51 2wq1_A General control protein 31.0 65 0.0022 17.2 3.9 20 39-58 7-26 (33)
52 1ik9_A DNA repair protein XRCC 30.9 1.6E+02 0.0054 21.7 8.9 51 41-95 134-184 (213)
53 3plt_A Sphingolipid long chain 30.0 1.8E+02 0.0061 22.0 11.6 55 39-100 131-185 (234)
54 2kv9_B Integrin beta-3; platel 29.9 22 0.00076 22.5 1.4 13 70-82 37-49 (75)
55 1m8o_B Platele integrin BETA3 29.2 21 0.00073 20.3 1.2 13 70-82 9-21 (47)
56 2xdj_A Uncharacterized protein 29.0 1.1E+02 0.0038 19.3 5.7 33 38-70 26-58 (83)
57 2dfs_A Myosin-5A; myosin-V, in 28.1 2.3E+02 0.0078 25.8 8.2 31 39-69 984-1014(1080)
58 3nmd_A CGMP dependent protein 27.8 1.1E+02 0.0037 19.1 4.4 12 65-76 55-66 (72)
59 1gd2_E Transcription factor PA 27.7 1.1E+02 0.0037 18.8 4.9 25 37-61 27-51 (70)
60 1fxk_C Protein (prefoldin); ar 27.0 1.4E+02 0.0047 19.7 6.5 33 39-71 95-127 (133)
61 3swy_A Cyclic nucleotide-gated 27.0 93 0.0032 17.7 7.2 38 38-75 4-41 (46)
62 2yqr_A KIAA0907 protein; struc 26.7 1.3E+02 0.0043 20.2 5.0 29 53-81 84-112 (119)
63 3mtu_E Head morphogenesis prot 26.5 1.3E+02 0.0043 19.1 7.0 25 45-69 43-67 (77)
64 2zdi_C Prefoldin subunit alpha 26.4 1.4E+02 0.0048 20.2 5.3 35 39-73 105-139 (151)
65 2khk_A ATP synthase subunit B; 26.4 88 0.003 17.2 4.8 38 36-73 6-43 (53)
66 2rr7_A Dynein heavy chain 9; m 26.2 71 0.0024 22.0 3.7 34 44-77 2-35 (155)
67 3aqb_B Component B of hexapren 25.8 1.2E+02 0.0042 23.2 5.4 61 29-92 260-320 (325)
68 3i00_A HIP-I, huntingtin-inter 25.1 1.6E+02 0.0055 19.8 7.3 44 34-77 10-53 (120)
69 2k48_A Nucleoprotein; viral pr 24.7 1.6E+02 0.0055 19.7 10.3 62 32-93 28-103 (107)
70 1kd8_B GABH BLL, GCN4 acid bas 24.7 93 0.0032 16.9 3.9 20 39-58 8-27 (36)
71 1d7m_A Cortexillin I; coiled-c 24.3 1.6E+02 0.0053 19.4 4.9 34 20-53 27-60 (101)
72 3rrk_A V-type ATPase 116 kDa s 23.7 2.4E+02 0.0082 21.4 7.1 41 36-76 223-263 (357)
73 1fxk_A Prefoldin; archaeal pro 23.5 1.4E+02 0.0048 18.6 5.7 31 39-69 72-102 (107)
74 2k6i_A Uncharacterized protein 23.2 43 0.0015 20.0 1.7 39 37-75 14-52 (56)
75 3v86_A De novo design helix; c 22.2 86 0.0029 15.6 3.7 20 42-61 3-22 (27)
76 1dh3_A Transcription factor CR 22.0 1.2E+02 0.0043 17.4 4.8 21 41-61 24-44 (55)
77 3u59_A Tropomyosin beta chain; 21.8 1.6E+02 0.0056 18.7 7.2 31 39-69 23-53 (101)
No 1
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.53 E-value=7.1e-14 Score=113.22 Aligned_cols=92 Identities=16% Similarity=0.235 Sum_probs=77.6
Q ss_pred hhHHHHHHhHHHHHHHHH-HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTMR-AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER 80 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~-~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er 80 (121)
.|||.+|+.|..+|..+. ..++.. .+|.+. +.++.++++|+.|+..++.||+||+.+|
T Consensus 272 ~avKd~l~~r~~aL~k~~e~~kl~~---------~~K~~~------------~~~~~~~~r~e~is~~~~~El~rF~~~r 330 (366)
T 3dyt_A 272 GCFPDIIGTHKGAIEKVKESDKLVA---------TSKITL------------QDKQNMVKRVSIMSYALQAEMNHFHSNR 330 (366)
T ss_dssp TTHHHHHHHHHHHHHHHHTHHHHHH---------TTSSCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------ccCcch------------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998884 233332 222221 2457788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 81 RADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 81 ~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
..||+.+|++|+..|+.+++++++.|+++++++.
T Consensus 331 ~~Dfk~~l~~yl~~qi~~~k~~~~~w~~~l~~~~ 364 (366)
T 3dyt_A 331 IYDYNSVIRLYLEQQVQFYETIAEKLRQALSRFP 364 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999875
No 2
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.48 E-value=5.5e-13 Score=109.03 Aligned_cols=92 Identities=11% Similarity=0.235 Sum_probs=77.9
Q ss_pred hhHHHHHHhHHHHHHHHH-HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTMR-AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER 80 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~~-~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er 80 (121)
.|||.+|+.|..||..++ ..++.. .+|.++ ++++.++++|+.|+..++.||.||+.+|
T Consensus 292 ~s~Kdll~~R~~aL~k~~ea~kl~~---------~~K~~~------------~~~~e~~~r~e~IS~~~~~El~rF~~~R 350 (386)
T 4akv_A 292 SNFPDIIHLQKGAFAKVKESQRMSD---------EGRMVQ------------DEADGIRRRCRVVGFALQAEMNHFHQRR 350 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------TTSSCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------hCCccH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998884 333332 223221 2456789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 81 RADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 81 ~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
..||+.+|++|+..|+.+++++++.|++++|.+.
T Consensus 351 v~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~ 384 (386)
T 4akv_A 351 ELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYD 384 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999875
No 3
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=98.87 E-value=5.1e-08 Score=74.14 Aligned_cols=105 Identities=14% Similarity=0.215 Sum_probs=80.9
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+.|+.++..|...++-+ ...+++....+- .| -...|..++...+.|+.+|+.+.+....||.+|...
T Consensus 144 ~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~--------~k---d~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~ 212 (251)
T 2fic_A 144 PDIKSRIAKRGRKLVDYDSARHHYESLQTAK--------KK---DEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNS 212 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--------cC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888889999988888 222232211110 00 123344556667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 117 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~ 117 (121)
+...|...|..|+..|..++.++.++|..+.+.+..++
T Consensus 213 ~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~~~~ 250 (251)
T 2fic_A 213 RVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLVGLE 250 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999987654
No 4
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=98.76 E-value=8.7e-08 Score=72.03 Aligned_cols=107 Identities=17% Similarity=0.229 Sum_probs=83.8
Q ss_pred hhHHHHHHhHHHHHHHH--H---HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--R---AEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~---~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
+.|+.++..|...++-| . ..++..++.|. .+ +.|+. .++...+.|+.+|+.+......||.+|
T Consensus 129 ~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k~--kd---~~kl~-------~ae~el~~ak~~ye~ln~~L~~eLp~l 196 (244)
T 1uru_A 129 PEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKR--KD---DVKLT-------KGREQLEEARRTYEILNTELHDELPAL 196 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBT--TB---CCTTT-------TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccC--cc---HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 56888999999999888 2 23333222111 11 23333 344556779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhccC
Q 033343 77 DKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYANEN 120 (121)
Q Consensus 77 ~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~~~~ 120 (121)
...|..+|...|..|+..|..++.++.++|+.+.|-+..+..+.
T Consensus 197 ~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~~l~~~~ 240 (244)
T 1uru_A 197 YDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATES 240 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999888776543
No 5
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=97.60 E-value=0.0033 Score=47.79 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=82.0
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+.|+.++..|...++-+ ...+++....|- +.| +.| +..++...+.|+..|+.+......|+-.|-.-
T Consensus 125 ~~i~k~I~KR~~kllDyd~~~~~~~kl~~k~-~kd---~~k-------l~kae~el~~a~~~ye~lN~~L~~eLP~l~~~ 193 (237)
T 4avm_A 125 SEIKERIAKRGRKLVDYDSARHHLEAVQNAK-KKD---EAK-------TAKAEEEFNKAQTVFEDLNQELLEELPILYNS 193 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS-SCC---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCc---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999998888 223333322221 112 234 44455667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 118 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~~ 118 (121)
|..=|...|.+|+..|..++..+.+.|..+-+-+.....
T Consensus 194 ~~~~~~~~~~~~i~~q~~f~~~~~~~~~~l~~~~~~~~~ 232 (237)
T 4avm_A 194 RIGCYVTIFQNISNLRDVFYREMSKLNHNLYEVMSKLER 232 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999998887665543
No 6
>4a3a_A Amphiphysin; structural genomics, invagination, knobs-IN-holes, curvature membrane, structural genomics consortium; 1.78A {Homo sapiens} PDB: 4atm_A 3sog_A
Probab=97.29 E-value=0.018 Score=43.96 Aligned_cols=105 Identities=21% Similarity=0.222 Sum_probs=79.3
Q ss_pred hhHHHHHHhHHHHHHHH--HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 2 LAVRSAFTDRSSALLTM--RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 2 ~aVk~a~~dR~~al~~~--~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
+.|+.++..|...++-+ ...+++....|-- .| + ..|..++...+.|+.+|+.+.....+|+-.|-.-
T Consensus 130 ~~i~k~I~KR~~KllDYD~~~~k~~kL~~K~~-kd---~-------~kl~kae~el~~Ak~~Ye~lN~~L~eELP~l~~~ 198 (243)
T 4a3a_A 130 PDIKNRIAKRSRKLVDYDSARHHLEALQSSKR-KD---E-------SRISKAEEEFQKAQKVFEEFNVDLQEELPSLWSR 198 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS-CC---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHhccc-cc---H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888 2233332222210 12 1 3344456667789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Q 033343 80 RRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYA 117 (121)
Q Consensus 80 r~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~ 117 (121)
|..=|...|.+|+..|..++..+.++-..+-+-+...+
T Consensus 199 r~~~~~~~~~s~i~~Q~~f~~e~~k~~~~l~~~~~~~~ 236 (243)
T 4a3a_A 199 RVGFYVNTFKNVSSLEAKFHKEIAVLCHKLYEVMTKLG 236 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999988888776665443
No 7
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=97.09 E-value=0.0033 Score=47.99 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 51 TEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 51 ~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
++..++.|+.+|+...+....+|..|-.- ..++..-|..|+..|..|++++.+.+..+.|.+...
T Consensus 179 ~eeEle~A~~~fe~~~e~~~~~m~~l~~~-e~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~ 243 (256)
T 1zww_A 179 PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEER 243 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678889999999999999999999844 588889999999999999999999999999998753
No 8
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=96.75 E-value=0.0095 Score=45.07 Aligned_cols=64 Identities=11% Similarity=0.211 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 52 EDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 52 e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
+..++.|+..|+...+....+|..|..- ..++..-|..|+..|..|++++.+++..+.|.+.+.
T Consensus 164 eeEl~~A~~~fe~~~e~~~~~m~~~~~~-~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~ 227 (240)
T 2z0v_A 164 DEEVRQAVEKFEESKELAERSMFNFLEN-DVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMR 227 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999999999999999854 588888999999999999999999999999998753
No 9
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=96.00 E-value=0.035 Score=42.10 Aligned_cols=91 Identities=12% Similarity=0.112 Sum_probs=69.4
Q ss_pred HHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 21 EKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 100 (121)
Q Consensus 21 ~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~ 100 (121)
.++++..+|..+.+..+.. +..+.+.+..+..+++.|....=.--.-|..++.-+..++...|.+|+..|..+++
T Consensus 138 ~~yd~al~k~~~~~k~k~~-----e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~ 212 (265)
T 2q12_A 138 NDHDAAINRYSRLSKKREN-----DKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFK 212 (265)
T ss_dssp HHHHHHHHHHHHHHTSCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCcc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445544555444333221 23346778888889999999998888888889999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhcch
Q 033343 101 KIANVWA-KVAEETSGY 116 (121)
Q Consensus 101 ~~~~~W~-~~~~e~~~~ 116 (121)
++.++|. .+.|-+...
T Consensus 213 ~g~e~~~~~~~p~~~~l 229 (265)
T 2q12_A 213 MGSENLNEQLEEFLANI 229 (265)
T ss_dssp HHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999994 777765543
No 10
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=95.91 E-value=0.065 Score=42.62 Aligned_cols=90 Identities=12% Similarity=0.116 Sum_probs=69.5
Q ss_pred HHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 21 EKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 100 (121)
Q Consensus 21 ~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~ 100 (121)
.++++..+|..+.+..+.. +....+++..+..+++.|...+-.-..-|..++..+..++...|.+|+..|..++.
T Consensus 138 ~~yd~al~k~~~~~k~k~~-----e~~~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~ 212 (385)
T 2q13_A 138 NDHDAAINRYSRLSKKREN-----DKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFK 212 (385)
T ss_dssp HHHHHHHHHHHTCCSSSCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556555676655543321 11234566778889999999998888889999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHhcc
Q 033343 101 KIANVWA-KVAEETSG 115 (121)
Q Consensus 101 ~~~~~W~-~~~~e~~~ 115 (121)
++.++|. .+.|-+..
T Consensus 213 ~g~~~~~~~~~~~~~~ 228 (385)
T 2q13_A 213 MGSENLNEQLEEFLAN 228 (385)
T ss_dssp HHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999994 77775543
No 11
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=90.24 E-value=3.3 Score=32.84 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 50 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWA 107 (121)
Q Consensus 50 ~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~ 107 (121)
+....+..+++.|....=....-|..++..+..||...|.+|+..|..+.+.+.+.|.
T Consensus 185 e~~~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~ 242 (407)
T 4h8s_A 185 EVGKEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFS 242 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677788888888877778889999999999999999999999999999999884
No 12
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=89.35 E-value=5.1 Score=29.53 Aligned_cols=74 Identities=8% Similarity=0.156 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEE 112 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e 112 (121)
.|+..++.++.......+..+.+|+.-...+...++.++.+|..-|+.+|..|+..--..+...-++=+.+...
T Consensus 170 ~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~ 243 (276)
T 2v0o_A 170 VKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEIHLQIGQVHEEFINN 243 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 56677778888888888888889988888888999999999999999999999976655554444444444333
No 13
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=88.23 E-value=6.5 Score=29.29 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 60 NEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 60 ~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
..|+.-...+...++.++.+|..-|+.+|..|+.........+.+.=..+...+..
T Consensus 208 ~~~~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 263 (305)
T 2efl_A 208 EYYHTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVKAAES 263 (305)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 33444555555678899999999999999999998766665555544454444443
No 14
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=86.73 E-value=5.1 Score=30.10 Aligned_cols=51 Identities=22% Similarity=0.306 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNML 88 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml 88 (121)
..+++.|+.++.++.+..-.+..+|+++.++...|.+...+-=..+|..-|
T Consensus 65 ~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~L 115 (213)
T 4ani_A 65 KAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDL 115 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999999999887766555444433
No 15
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=84.56 E-value=11 Score=28.16 Aligned_cols=54 Identities=11% Similarity=0.049 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 62 YERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 62 ye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
|..-...+...++.++.+|..-|+.+|..|+.........+...-..+...+..
T Consensus 203 ~~~~~p~~~~~lQ~lee~r~~~lk~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (301)
T 2efk_A 203 YFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPIIAKCLEGMKVAANA 256 (301)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444444455667788899999999999999997776666555555555554443
No 16
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=84.46 E-value=9.9 Score=29.40 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 44 LKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 44 l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
++.++...-...+..+..|++-...+..-++.++.+|-.-|+++|..|+..
T Consensus 211 a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~ 261 (350)
T 3aco_A 211 TKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH 261 (350)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555666778889999999999999999876
No 17
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=82.95 E-value=9.5 Score=29.18 Aligned_cols=53 Identities=9% Similarity=0.083 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 42 EELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 42 ~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
..++.++...-...+..+..|+.-...+...++.++.+|..-|+++|..|+..
T Consensus 200 ~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~~~~ 252 (337)
T 2x3v_A 200 QKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKRH 252 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555666666666677778889999999999999999874
No 18
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=81.38 E-value=15 Score=27.69 Aligned_cols=65 Identities=11% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 033343 50 VTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETS 114 (121)
Q Consensus 50 ~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~ 114 (121)
.....+..++..|+........=|+=++..|..+|...|.-|...-..|+..+.++-+.....|.
T Consensus 143 ~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l~~~~~~f~ 207 (224)
T 1i4d_A 143 SAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLEQTLQQFN 207 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 46777888999999999999999999999999999999999988887777777777665554443
No 19
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=80.05 E-value=15 Score=27.37 Aligned_cols=57 Identities=11% Similarity=0.029 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
..++..++.++...-......+.+|+.-...+...++.++.+|..-|+.+|..|+..
T Consensus 183 ~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~ 239 (290)
T 3i2w_A 183 KDQVQKCREKYEQAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSC 239 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888889999989999999999999999999999999999999999999999965
No 20
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=78.19 E-value=20 Score=27.06 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVN 94 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~ 94 (121)
..++..++.++...-...+..+..|++-...+..-++.++.+|-.-|+++|..|+..
T Consensus 205 ~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~~lk~~l~~~~~~ 261 (312)
T 3abh_A 205 KQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH 261 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888888888888778888889999999999999999999887
No 21
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.94 E-value=14 Score=25.18 Aligned_cols=64 Identities=22% Similarity=0.320 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIK---ENNRTELERLDKER-RADFLNMLKGFVVNQVGYAEKI 102 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~---~~~~~EieRF~~er-~~D~~~ml~~f~~~Q~~~~~~~ 102 (121)
+|+-.+...+..+-......-+++..+. ...-.--.+++.+| ..||..+|..|=..|-.++++.
T Consensus 51 ~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 51 ENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888888888877777777652 11122356777777 8899999999999999988775
No 22
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=77.49 E-value=10 Score=31.05 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 43 ELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 95 (121)
Q Consensus 43 ~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q 95 (121)
.++.++...-......+.+|+.-...+..-++.++++|..-|+++|..|+...
T Consensus 203 ~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~l 255 (486)
T 3haj_A 203 KTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHL 255 (486)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444445555556666677778899999999999999999998654
No 23
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=76.14 E-value=24 Score=27.10 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVV 93 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~ 93 (121)
...+...+.++...-......+..|+.-...+-.-++.++++|..-|+++|..|+.
T Consensus 196 ~~~~~~a~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~ 251 (320)
T 3m3w_A 196 TKEAEKMKTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQ 251 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888889999999999888899999999999999999999999985
No 24
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=71.22 E-value=13 Score=21.74 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRT 71 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~ 71 (121)
+.+..|+.+|..+|+.+...+..|..|++.+..
T Consensus 12 RsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~ 44 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKLKYKAISEELDH 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567778888888888888888888888876644
No 25
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=71.17 E-value=15 Score=27.01 Aligned_cols=52 Identities=19% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTE----DAKSVAINEYERIKENNRTELERLDKERRADFLNMLK 89 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e----~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~ 89 (121)
..++..|+.++.++. +..-.+..+|+++.++...|.+...+.-...|..-|+
T Consensus 41 ~~~~~~l~~~l~e~~~~~~d~~lR~~Ae~eN~rkR~~ke~~~~~~~a~~~~~~~LL 96 (197)
T 1dkg_A 41 DEKVANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELL 96 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGHHHHSH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888876 4888899999999999999998887655444444333
No 26
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=70.41 E-value=22 Score=24.11 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRA 82 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~ 82 (121)
-..+|..|...+...|..+...++.|...+..+..+|.++-..|..
T Consensus 43 ~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~ 88 (112)
T 1x79_B 43 SSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQ 88 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999999999999999999998877754
No 27
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=67.72 E-value=41 Score=26.09 Aligned_cols=78 Identities=13% Similarity=0.085 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGY 116 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~ 116 (121)
.|++++..++..-.......+.+++..+.++...|.-.=.|=+.-++...++|..+|-.....+--....+.+...-|
T Consensus 184 ~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D~~lk~~t~~~fq~~~~~~~~~p~~~~~L~e~~~~y 261 (279)
T 3qwe_A 184 AKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGDEVLRRVTLSLFGLRGAQAERGPRAFAALAECCAPF 261 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHcCCC
Confidence 467777777777777777777777777777777777777788888888888888888776666666666666655444
No 28
>3qf7_D MRE11; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima}
Probab=63.37 E-value=5.8 Score=22.89 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 033343 82 ADFLNMLKGFVVNQVGYAEKIANVWAKVAEETSG 115 (121)
Q Consensus 82 ~D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~ 115 (121)
-||.+.|+.|+..-+.-.++++++...++++.+.
T Consensus 7 ld~felfkey~k~r~~~he~l~k~~~ell~evkk 40 (50)
T 3qf7_D 7 LDYFELFKEYLKKREENHEKLLKILDELLDEVKK 40 (50)
T ss_dssp CCHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999999999999988654
No 29
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=62.74 E-value=23 Score=21.56 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 53 DAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGF 91 (121)
Q Consensus 53 ~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f 91 (121)
..+...+.+||.|...++.|++-|=..|-.+|.......
T Consensus 9 ~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~ 47 (77)
T 3trt_A 9 AAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRN 47 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 455678889999999999999999888888776554443
No 30
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=61.67 E-value=30 Score=22.50 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 033343 36 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER---RADFLNMLKGF 91 (121)
Q Consensus 36 ~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er---~~D~~~ml~~f 91 (121)
+|..++..|+.....++..+...+..|..=.+....-|..++.+- +.|+-..+..|
T Consensus 9 ~~~~~~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EY 67 (95)
T 3mov_A 9 SRENLYFQGQKESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDY 67 (95)
T ss_dssp ---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555444444444444433332 23444444444
No 31
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=61.11 E-value=5.3 Score=23.00 Aligned_cols=36 Identities=22% Similarity=0.505 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhc
Q 033343 83 DFLNMLKGFVVNQVGYAEKIANVWAKVAEETSGYAN 118 (121)
Q Consensus 83 D~~~ml~~f~~~Q~~~~~~~~~~W~~~~~e~~~~~~ 118 (121)
++..-+=-+++.+.+.-+...++|..+.+++.+|..
T Consensus 7 s~LD~vG~qiVrkmKtGe~FfKiWS~~~e~I~sYV~ 42 (45)
T 3l32_A 7 SYLDNVGVQIVRQMRSGERFLKIWSQTVEEIVSYVT 42 (45)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHh
Confidence 455556667888889999999999999999998853
No 32
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=60.65 E-value=23 Score=20.81 Aligned_cols=31 Identities=10% Similarity=0.175 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
.|+.+|..+|..+...+..|+.|-.+..+++
T Consensus 18 ~kVdqLssdV~al~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 18 AKADQASNDANAARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777777777777777777777766665554
No 33
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=58.54 E-value=33 Score=21.97 Aligned_cols=43 Identities=14% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKEN---NRTELERLDKERR 81 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~---~~~EieRF~~er~ 81 (121)
+.|.-|+.+|.+++..-.....+.+.+... ...|.++++.|+.
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 445555556666665555555555554432 4457777766654
No 34
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.54 E-value=27 Score=20.03 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKE 79 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~e 79 (121)
.|+..|+.+ ..+++.-.+.++.|..+.+.||.|++.+
T Consensus 10 kkiarlkkd----nlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 10 KKIARLKKD----NLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhh----hhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 345554433 3455667788999999999999999865
No 35
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=53.27 E-value=58 Score=23.13 Aligned_cols=8 Identities=0% Similarity=-0.147 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 033343 86 NMLKGFVV 93 (121)
Q Consensus 86 ~ml~~f~~ 93 (121)
.+|..+..
T Consensus 130 ~tl~el~~ 137 (155)
T 2efr_A 130 QLEDKVEE 137 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 33333333
No 36
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=52.27 E-value=51 Score=23.05 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKE---NNRTELERLD 77 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~---~~~~EieRF~ 77 (121)
-+.|+..|+..+.++....+.|.+.|+++.. ..-.+++|-.
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLerae 93 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAE 93 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4479999999999999999999999999876 4456666543
No 37
>2etd_A LEMA protein; bromodomain-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.28A {Thermotoga maritima} SCOP: a.29.9.1
Probab=43.63 E-value=29 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 77 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~ 77 (121)
-..+|..++..+|..+..|++.|...+..-+..|..|=
T Consensus 104 ~f~~Lq~eL~~~EnrIa~ARr~YN~aV~~yN~~i~~FP 141 (171)
T 2etd_A 104 NFRQLMDELAGTENRIAVARRDYNEAVXXYNTAIXXFP 141 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 45578999999999999999999999988888777663
No 38
>3g9w_C Integrin beta-1D; protein-protein complex, PH domain superfold, PTB domain, HE bundle, intrinsically unstructured, cell adhesion; 2.17A {Homo sapiens} PDB: 1kup_B 1kuz_B
Probab=43.37 E-value=11 Score=22.24 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHH
Q 033343 70 RTELERLDKERRA 82 (121)
Q Consensus 70 ~~EieRF~~er~~ 82 (121)
+.|+.+|++||..
T Consensus 11 rREyakFe~Er~~ 23 (52)
T 3g9w_C 11 RREFAKFEKEKMN 23 (52)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH
Confidence 6799999999863
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=43.13 E-value=57 Score=22.38 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
..++.+|+.+|..+...+..+..+.++....+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45789999999999988888888877766555
No 40
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.09 E-value=1.2e+02 Score=24.25 Aligned_cols=36 Identities=22% Similarity=0.124 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTE 72 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~E 72 (121)
-..++..|+.++.+++..++.++.+++++.+....|
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 43 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKE 43 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777777777777777777777776665544
No 41
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.16 E-value=70 Score=20.59 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHhHHHHHHHH-----HHHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 6 SAFTDRSSALLTM-----RAEKLEAASSKIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIK 66 (121)
Q Consensus 6 ~a~~dR~~al~~~-----~~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~ 66 (121)
.+|..|..|.-.. ..++|.....++ .+.+..-+.+|..++.+++..+....+++
T Consensus 20 gaFgKrEaA~Ee~YfrqkekEqL~~LKkkl-------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 20 GAFGKREQAEEERYFRARAKEQLAALKKHK-------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788888885555 344444322222 24455556666666666666555555544
No 42
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.55 E-value=58 Score=18.91 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
..=++.|+.++.++...++....+.++.+...
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888888888877776643
No 43
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.92 E-value=78 Score=20.20 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNR 70 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~ 70 (121)
.+++.++.+|..++...+..+.+++.+...+.
T Consensus 77 ~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~ 108 (117)
T 2zqm_A 77 EKIETLEVRLNALERQEKKLNEKLKELTAQIQ 108 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666555543
No 44
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=36.86 E-value=5.3 Score=29.03 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 40 KIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKG 90 (121)
Q Consensus 40 Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~ 90 (121)
+++.++.++.++.+..-.+..+|+++.++...|.+...+.-...|..-|..
T Consensus 27 ~~~~l~~e~~e~~d~~lR~~Ae~eN~rkR~~rE~e~~~~~a~e~~~~~LLp 77 (177)
T 3a6m_A 27 RLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAREREGVLKALRALLP 77 (177)
T ss_dssp STTGGGGTSSSHHHHHHTTTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888888888999999999999999999988877666655555544
No 45
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=36.11 E-value=22 Score=22.46 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHH
Q 033343 70 RTELERLDKERRA 82 (121)
Q Consensus 70 ~~EieRF~~er~~ 82 (121)
+.|..||++||..
T Consensus 41 rrE~~kFEkE~~~ 53 (79)
T 2knc_B 41 RKEFAKFEEERAR 53 (79)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7899999999875
No 46
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=34.79 E-value=1.7e+02 Score=23.11 Aligned_cols=58 Identities=12% Similarity=0.032 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKEN---------------NRTELERLDKERRADFLNMLKGFVVNQV 96 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~---------------~~~EieRF~~er~~D~~~ml~~f~~~Q~ 96 (121)
..++.++..+......+..++.+|..-... +..-++.++.+|..-|+++|..|+..--
T Consensus 164 ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~~~d~lQ~lEe~Ri~~lk~~L~~~~~~~~ 236 (406)
T 4dyl_A 164 KDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGLLRSLQDLHEEMACILKEILQEYLEISS 236 (406)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666667777777533322 2344667888999999999999987543
No 47
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=34.18 E-value=1.1e+02 Score=24.09 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERI 65 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i 65 (121)
.||.+|+.+|..++..++.+..+.++.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999888888776654
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=34.08 E-value=95 Score=20.06 Aligned_cols=31 Identities=6% Similarity=0.168 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
+++++++..+..++.....+..+...+..++
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~ 53 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 49
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=33.77 E-value=99 Score=20.18 Aligned_cols=50 Identities=26% Similarity=0.291 Sum_probs=36.0
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIE-ELKETIRVTEDAKSVAINEYERIKENNRTELERLDKER-RADFLNMLKGFVVNQVGYAEKI 102 (121)
Q Consensus 39 ~Ki~-~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er-~~D~~~ml~~f~~~Q~~~~~~~ 102 (121)
++++ ++...+..+.+..+ ++..+. +++| ..||..++.+|-..|..|+++-
T Consensus 40 ~~l~~~l~~~~~~L~k~~~----~l~~l~----------qkeRL~~dF~~l~~~fQ~~qr~y~ek~ 91 (97)
T 1hs7_A 40 YKIETELIPNCTSVRDKIE----SNILIH----------QNGKLSADFKNLKTKYQSLQQSYNQRK 91 (97)
T ss_dssp HHHHHTHHHHHHHHHHHHH----HSTHHH----------HCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----Hhcccc----------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677 77777777766666 444442 2333 5699999999999999999764
No 50
>1s4x_A Integrin beta-3; cell adhesion; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2ljd_A* 2lje_A* 2ljf_A*
Probab=32.60 E-value=24 Score=21.81 Aligned_cols=12 Identities=33% Similarity=0.742 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHH
Q 033343 70 RTELERLDKERR 81 (121)
Q Consensus 70 ~~EieRF~~er~ 81 (121)
+.|+.||++||.
T Consensus 29 rrEyakFE~Er~ 40 (67)
T 1s4x_A 29 RKEFAKFEEERA 40 (67)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 689999999986
No 51
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=30.96 E-value=65 Score=17.20 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVA 58 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a 58 (121)
+|+++|-....+++..+...
T Consensus 7 dKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 7 DKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 56666666666665555443
No 52
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=30.89 E-value=1.6e+02 Score=21.66 Aligned_cols=51 Identities=12% Similarity=0.203 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 41 IEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQ 95 (121)
Q Consensus 41 i~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q 95 (121)
+..++..+..+....+..+.++..+ ...+++|-..|...=..++..|+.+.
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l----~~qlE~~v~~K~~~E~~L~~KF~~lL 184 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDV----QGRFEKAVSAKEALETDLYKRFILVL 184 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666544 47888888888888888888888765
No 53
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=30.00 E-value=1.8e+02 Score=21.99 Aligned_cols=55 Identities=16% Similarity=0.071 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFVVNQVGYAE 100 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~~~Q~~~~~ 100 (121)
.|+..|++++..+|...-.++.++.+|+.....|=-..+- ..|+.+++.|+-.+.
T Consensus 131 ~kl~~LeqELvraEae~lvaEAqL~n~kR~~lKEa~~~~f-------~Al~E~aEK~~ila~ 185 (234)
T 3plt_A 131 TKIPVLEQELVRAEAESLVAEAQLSNITREKLKAAYSYMF-------DSLRELSEKFALIAG 185 (234)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999877666544432 234555555554443
No 54
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion; NMR {Homo sapiens}
Probab=29.90 E-value=22 Score=22.49 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHH
Q 033343 70 RTELERLDKERRA 82 (121)
Q Consensus 70 ~~EieRF~~er~~ 82 (121)
+.|+.||++||..
T Consensus 37 rREyaKFEkEr~~ 49 (75)
T 2kv9_B 37 RKEFAKFEEERAR 49 (75)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5799999999874
No 55
>1m8o_B Platele integrin BETA3 subunit: cytoplasmic domain; ALFA helix, platelet, membrane protein; NMR {Homo sapiens} SCOP: j.60.1.1 PDB: 2l1c_B* 2h7d_B* 2h7e_B*
Probab=29.24 E-value=21 Score=20.26 Aligned_cols=13 Identities=31% Similarity=0.670 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH
Q 033343 70 RTELERLDKERRA 82 (121)
Q Consensus 70 ~~EieRF~~er~~ 82 (121)
+.|+.||++|+..
T Consensus 9 rrEyakFe~e~~~ 21 (47)
T 1m8o_B 9 RKEFAKFEEERAR 21 (47)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 5699999999863
No 56
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=29.02 E-value=1.1e+02 Score=19.30 Aligned_cols=33 Identities=6% Similarity=0.129 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNR 70 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~ 70 (121)
..++++|+.+|..+...++...-+.+.+.++-+
T Consensus 26 q~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 26 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 368889999999999999988888888777554
No 57
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=28.12 E-value=2.3e+02 Score=25.80 Aligned_cols=31 Identities=19% Similarity=0.181 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
.++..|+.++.++++..+.+.++++.+.+.+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555554443
No 58
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=27.75 E-value=1.1e+02 Score=19.09 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 033343 65 IKENNRTELERL 76 (121)
Q Consensus 65 i~~~~~~EieRF 76 (121)
.....++|+..|
T Consensus 55 eI~~LqseLDKf 66 (72)
T 3nmd_A 55 LIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 333444444444
No 59
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=27.71 E-value=1.1e+02 Score=18.77 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINE 61 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~e 61 (121)
+...+.+|+..|..++.....+..+
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~e 51 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLE 51 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666655544443
No 60
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=27.01 E-value=1.4e+02 Score=19.66 Aligned_cols=33 Identities=9% Similarity=0.151 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRT 71 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~ 71 (121)
+|++.++..+..++......+.++..+.+.+++
T Consensus 95 ~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 95 SQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666655544
No 61
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=26.95 E-value=93 Score=17.71 Aligned_cols=38 Identities=16% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 38 IRKIEELKETIRVTEDAKSVAINEYERIKENNRTELER 75 (121)
Q Consensus 38 ~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieR 75 (121)
++|++.|+..++.++-.....-.+|+.....+..=|..
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~ 41 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777666666666666655544443
No 62
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.73 E-value=1.3e+02 Score=20.16 Aligned_cols=29 Identities=14% Similarity=0.162 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 53 DAKSVAINEYERIKENNRTELERLDKERR 81 (121)
Q Consensus 53 ~~~e~a~~eye~i~~~~~~EieRF~~er~ 81 (121)
++++.|..-.+.|.....++...|+.++.
T Consensus 84 e~i~~A~~~Ie~Ll~~v~~~~~~~~~q~~ 112 (119)
T 2yqr_A 84 EGLAAAKKLCENLLQTVHAEYSRFVNQIN 112 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHhhC
Confidence 45566777777788888888888887753
No 63
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=26.47 E-value=1.3e+02 Score=19.07 Aligned_cols=25 Identities=12% Similarity=-0.029 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 45 KETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 45 ~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
+.+|..+|+.+...+.+|..+.+.+
T Consensus 43 EKTIDDLEDkL~~eKEK~k~i~eeL 67 (77)
T 3mtu_E 43 VSEYNDLEEKVAHAKEENLNMHQML 67 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567777777777777777666553
No 64
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=26.43 E-value=1.4e+02 Score=20.23 Aligned_cols=35 Identities=14% Similarity=0.232 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENNRTEL 73 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~Ei 73 (121)
+|++.++..+..++..+...+..+..+...+..-.
T Consensus 105 ~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~ 139 (151)
T 2zdi_C 105 KRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQ 139 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777777777777666665443
No 65
>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}
Probab=26.36 E-value=88 Score=17.22 Aligned_cols=38 Identities=11% Similarity=0.077 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 36 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTEL 73 (121)
Q Consensus 36 ~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~Ei 73 (121)
.|..+|..--.+........+.+..+|+......+.|-
T Consensus 6 ~R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar~ea 43 (53)
T 2khk_A 6 KRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEA 43 (53)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777667777777777888888888887777653
No 66
>2rr7_A Dynein heavy chain 9; microtubule-binding, stalk head, MTBD, antiparallel coil, motor protein, DSH; NMR {Chlamydomonas reinhardtii}
Probab=26.16 E-value=71 Score=22.05 Aligned_cols=34 Identities=12% Similarity=0.185 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 44 LKETIRVTEDAKSVAINEYERIKENNRTELERLD 77 (121)
Q Consensus 44 l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~ 77 (121)
.+.++.+++=++++|+.-.+.|+.....||..|.
T Consensus 2 ae~dL~~A~PaL~~A~~al~~l~k~di~Eiks~~ 35 (155)
T 2rr7_A 2 SQADLAEALPLLEAALKALDTLKPADITEVKGMK 35 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccC
Confidence 4678888899999999999999999999998873
No 67
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=25.77 E-value=1.2e+02 Score=23.25 Aligned_cols=61 Identities=10% Similarity=0.094 Sum_probs=42.2
Q ss_pred cccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 29 KIFGGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLDKERRADFLNMLKGFV 92 (121)
Q Consensus 29 kl~G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~~er~~D~~~ml~~f~ 92 (121)
+++|.+.. ++.+..+..-|.+. .++.++...+...+.+...|+.|...-.++...-|.+|+
T Consensus 260 ~~~~~~~~-~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~A~~~L~~lp~~~~~~~L~~l~~~~ 320 (325)
T 3aqb_B 260 KHLTSTSD-DEVYQYIVSQVKQY--GIEPAELLSRKYGDKAKYHLSQLQDSNIKDYLEEIHEKM 320 (325)
T ss_dssp HTCCTTCC-HHHHHHHHHHHHHH--THHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCC-HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444322 56777777778777 788889999999999999999986544444444444444
No 68
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=25.14 E-value=1.6e+02 Score=19.82 Aligned_cols=44 Identities=16% Similarity=0.137 Sum_probs=32.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 34 DKSRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERLD 77 (121)
Q Consensus 34 ~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF~ 77 (121)
+..|+.=|+.|+.+|..+...++....+.-.++..++.=|...+
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le 53 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELE 53 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888887777777777666444433
No 69
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.74 E-value=1.6e+02 Score=19.70 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=41.1
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 32 GGDKSRIRKIEELKETIRVTEDAKSVAINEYERIKENN--------------RTELERLDKERRADFLNMLKGFVV 93 (121)
Q Consensus 32 G~~~~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~--------------~~EieRF~~er~~D~~~ml~~f~~ 93 (121)
|-|..-..-+++|+.+|...|.++..|++....-.+.. |+.+---=+.|-.+|+.+|.+-+.
T Consensus 28 ~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 28 GIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33677788999999999999999998888775544332 222222334566666666655444
No 70
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=24.66 E-value=93 Score=16.90 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVA 58 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a 58 (121)
+|+++|-..-.+++..+...
T Consensus 8 ~KVEeLl~~~~~Le~eV~RL 27 (36)
T 1kd8_B 8 AKVEELKSKLWHLKNKVARL 27 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 55565555555555555443
No 71
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=24.26 E-value=1.6e+02 Score=19.36 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=24.3
Q ss_pred HHHHHHhhhcccCCchhhHHHHHHHHHHHHHHHH
Q 033343 20 AEKLEAASSKIFGGDKSRIRKIEELKETIRVTED 53 (121)
Q Consensus 20 ~~~le~~~skl~G~~~~r~~Ki~~l~~eI~~~e~ 53 (121)
...|+...+.+.|....|+.++.+++..|.+.-.
T Consensus 27 k~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk 60 (101)
T 1d7m_A 27 KDQLNSLLASLESEGAEREKRLRELEAKLDETLK 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666678888878888888777777665433
No 72
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=23.73 E-value=2.4e+02 Score=21.37 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 36 SRIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELERL 76 (121)
Q Consensus 36 ~r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieRF 76 (121)
...+-+.+++..|.+++..++....+...+.+.....+..+
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~ 263 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRESGEALIAL 263 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788899999999999999988888888887766655544
No 73
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=23.51 E-value=1.4e+02 Score=18.61 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
.+++.++.+|..++...+..+.+++.+...+
T Consensus 72 ~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 72 EKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555555443
No 74
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=23.16 E-value=43 Score=20.04 Aligned_cols=39 Identities=23% Similarity=0.196 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 37 RIRKIEELKETIRVTEDAKSVAINEYERIKENNRTELER 75 (121)
Q Consensus 37 r~~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~~~EieR 75 (121)
+++=+.+++..=..+...++.|..+-+.|....+.|-..
T Consensus 14 ~~EvL~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke 52 (56)
T 2k6i_A 14 VMEAIKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK 52 (56)
T ss_dssp CTTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555678888999999999999999888653
No 75
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=22.16 E-value=86 Score=15.63 Aligned_cols=20 Identities=15% Similarity=0.164 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033343 42 EELKETIRVTEDAKSVAINE 61 (121)
Q Consensus 42 ~~l~~eI~~~e~~~e~a~~e 61 (121)
.+|+.++-++...+...+.+
T Consensus 3 yqlkdevgelkgevralkde 22 (27)
T 3v86_A 3 YQLKDEVGELKGEVRALKDE 22 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHhHHHHHHHH
Confidence 34444444444444443333
No 76
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=21.97 E-value=1.2e+02 Score=17.41 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033343 41 IEELKETIRVTEDAKSVAINE 61 (121)
Q Consensus 41 i~~l~~eI~~~e~~~e~a~~e 61 (121)
+++|+..+..++..-.....+
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544443333333
No 77
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=21.83 E-value=1.6e+02 Score=18.73 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033343 39 RKIEELKETIRVTEDAKSVAINEYERIKENN 69 (121)
Q Consensus 39 ~Ki~~l~~eI~~~e~~~e~a~~eye~i~~~~ 69 (121)
+++++++..+..++.....+..+...++..+
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKi 53 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKL 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444444444444444444444444444433
Done!