Query 033346
Match_columns 121
No_of_seqs 125 out of 810
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 21:21:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pfy_A OTU domain-containing p 100.0 8E-32 2.7E-36 194.4 8.4 104 1-105 79-182 (185)
2 3by4_A OTU1, ubiquitin thioest 100.0 3.8E-29 1.3E-33 183.8 9.0 98 3-104 41-139 (212)
3 3phx_A RNA-directed RNA polyme 99.9 2.9E-27 9.9E-32 170.6 8.8 104 1-108 51-163 (185)
4 3phu_A RNA-directed RNA polyme 99.9 1.2E-26 4.2E-31 171.0 8.9 106 1-110 51-165 (219)
5 1tff_A Ubiquitin thiolesterase 99.9 1.5E-21 5.2E-26 145.2 9.9 95 9-106 133-232 (234)
6 2zfy_A Ubiquitin thioesterase 99.8 5.8E-21 2E-25 142.0 10.3 93 9-104 136-234 (234)
7 4dhi_B Ubiquitin thioesterase 99.8 5.3E-20 1.8E-24 139.8 9.9 100 9-110 171-279 (284)
8 4ddg_A Ubiquitin-conjugating e 99.7 3.9E-17 1.3E-21 129.4 7.9 95 7-104 299-399 (399)
9 3dkb_A Tumor necrosis factor, 97.1 0.0026 8.9E-08 49.7 8.9 109 2-111 133-289 (390)
10 3zrh_A Ubiquitin thioesterase 96.4 0.03 1E-06 44.5 9.8 108 1-109 209-353 (454)
11 3fz2_A Minor tail protein U; m 66.7 2.5 8.4E-05 28.4 1.6 21 3-23 1-21 (134)
12 2jn4_A Hypothetical protein FI 62.7 0.025 8.7E-07 35.3 -8.2 34 20-53 27-61 (87)
13 4a5u_A RNA replicase polyprote 59.4 14 0.00049 25.4 4.4 48 53-105 108-157 (160)
14 2vof_A BCL-2-related protein A 54.1 4.6 0.00016 27.4 1.2 55 6-60 37-104 (157)
15 2nl9_A Fusion protein consisti 48.7 5.1 0.00017 27.1 0.7 56 6-61 38-105 (157)
16 4hw4_A Induced myeloid leukemi 45.6 7.6 0.00026 26.4 1.2 56 6-61 38-105 (157)
17 3e98_A GAF domain of unknown f 42.2 5.3 0.00018 29.2 0.0 17 13-29 34-50 (252)
18 4b4s_A BCL-2-like protein 10; 41.3 17 0.00059 25.1 2.6 58 6-63 36-102 (175)
19 3pk1_A Induced myeloid leukemi 39.4 15 0.00052 25.7 2.0 57 6-62 71-139 (189)
20 2w3l_A BCL2-XL, apoptosis regu 34.3 22 0.00077 23.4 2.2 55 6-60 30-95 (144)
21 2pst_X Hypothetical protein PA 33.9 19 0.00066 21.5 1.6 17 12-28 46-62 (74)
22 2lpd_A Uncharacterized protein 31.1 29 0.00099 21.8 2.1 18 12-29 59-76 (95)
23 1o0l_A Apoptosis regulator BCL 30.6 32 0.0011 23.8 2.6 55 6-60 46-111 (188)
24 2khr_A Protein MBTH; sideropho 30.5 20 0.00068 21.5 1.2 18 12-29 48-65 (74)
25 1bgf_A STAT-4; transcription f 29.8 20 0.00068 23.5 1.3 22 1-23 22-43 (124)
26 2wh6_A Early antigen protein R 29.4 23 0.00079 24.6 1.6 55 7-61 59-126 (173)
27 2yvc_D Neprilysin; protein-pep 29.4 20 0.00069 16.7 0.9 17 103-120 7-24 (26)
28 1r2d_A Apoptosis regulator BCL 29.3 40 0.0014 24.2 2.9 55 6-60 85-150 (218)
29 4er8_A Tnparep for protein; pr 29.1 40 0.0014 22.7 2.8 38 13-51 110-154 (165)
30 3tac_B Liprin-alpha-2; transfe 28.9 28 0.00096 26.7 2.1 32 32-63 261-298 (334)
31 2xa0_A BCL-2, apoptosis regula 27.9 49 0.0017 23.5 3.1 55 6-60 92-157 (207)
32 1k3k_A Functional anti-apoptot 27.7 20 0.00067 24.4 1.0 51 10-60 35-97 (158)
33 1mdc_A Insect fatty acid bindi 27.1 1.3E+02 0.0044 19.4 6.7 33 32-70 14-46 (132)
34 2ebm_A RWD domain-containing p 25.2 1.3E+02 0.0044 18.7 5.3 31 50-80 16-46 (128)
35 1fdq_A Fatty acid-binding prot 23.5 1.2E+02 0.0039 19.5 4.2 33 32-70 14-46 (131)
36 1crb_A Cellular retinol bindin 23.1 1.1E+02 0.0038 19.7 4.0 33 32-70 14-46 (134)
37 2ims_A Apoptosis regulator BAK 22.9 24 0.00082 24.0 0.7 53 8-60 60-123 (171)
38 3qq6_A HTH-type transcriptiona 21.4 67 0.0023 18.1 2.4 30 37-66 39-69 (78)
39 3qwg_A ESX-1 secretion-associa 21.4 49 0.0017 21.1 1.9 33 36-68 44-77 (123)
40 3skq_A Mitochondrial distribut 21.3 93 0.0032 22.8 3.6 57 8-64 24-93 (249)
41 4dxy_A Cytochrome P450, CYP101 20.9 45 0.0015 25.4 1.9 60 4-63 105-171 (417)
42 1b56_A Fatty acid binding prot 20.7 1.3E+02 0.0046 19.3 4.1 33 32-70 17-49 (135)
43 1mvg_A Liver basic fatty acid 20.4 1.3E+02 0.0043 19.2 3.8 33 32-70 12-44 (125)
44 3tad_C Liprin-beta-1; protein 20.4 23 0.00078 26.2 0.1 32 32-63 190-227 (265)
No 1
>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Probab=99.97 E-value=8e-32 Score=194.43 Aligned_cols=104 Identities=21% Similarity=0.392 Sum_probs=73.5
Q ss_pred CCCChhhHHHHHHHHHHHHHhCccccCCCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEEecC
Q 033346 1 MYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMP 80 (121)
Q Consensus 1 lyg~q~~h~~lR~~vv~ym~~n~~~f~~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~ 80 (121)
|||+|+.|.+||+.||+||++|++.|++||+++|++||++|+++|+|||++||+|||++|+++|.|++.+... ...+.+
T Consensus 79 L~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~WGg~iEL~AlS~~~~v~I~V~~~~~~~-i~i~~g 157 (185)
T 3pfy_A 79 VYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTEP-INTFHG 157 (185)
T ss_dssp HHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------CCHHHHHHHHHHHTSCEEEESSCSSC-SEEECT
T ss_pred HhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCccchHHHHHHHHHhhCCcEEEEECCCCC-eEEecC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999976432 122222
Q ss_pred CCCCCCCeEEEEecCCCcccceecC
Q 033346 81 QHQAPKRELWLSFWSEVHYNSLYDI 105 (121)
Q Consensus 81 ~~~~~~~~i~L~y~~~~HYdsv~~~ 105 (121)
......++|+|+|++++|||||++-
T Consensus 158 ~~~~~~~~I~L~Y~~~~HYnSv~~p 182 (185)
T 3pfy_A 158 IHQNEDEPIRVSYHRNIHYNSVVNP 182 (185)
T ss_dssp TSCCTTSCEEEEEETTTEEEEEECC
T ss_pred ccCCCCCEEEEEECCCCCcccccCC
Confidence 2223568899999999999999753
No 2
>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A
Probab=99.96 E-value=3.8e-29 Score=183.82 Aligned_cols=98 Identities=16% Similarity=0.241 Sum_probs=86.2
Q ss_pred CChhhHHHHHHHHHHHHHhCccccC-CCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEEecCC
Q 033346 3 KSPEYHKHVRKEVVKQLKDCRSMYE-GYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 81 (121)
Q Consensus 3 g~q~~h~~lR~~vv~ym~~n~~~f~-~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~~ 81 (121)
|+|+.|.+||+.||+||++|++.|. .|++.+|++||++|+++++|||++||+|||++|+++|.|++.... +...+.+.
T Consensus 41 ~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~Als~~~~~~I~V~~~~~~-~~~~~~~~ 119 (212)
T 3by4_A 41 FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAV-KIEKFNED 119 (212)
T ss_dssp HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHHHHHHHTCEEEEEETTTT-EEEEESTT
T ss_pred CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHHHHHHHCCCEEEEECCCC-CeEEeCCC
Confidence 5788999999999999999999997 455899999999999999999999999999999999999997633 34566543
Q ss_pred CCCCCCeEEEEecCCCcccceec
Q 033346 82 HQAPKRELWLSFWSEVHYNSLYD 104 (121)
Q Consensus 82 ~~~~~~~i~L~y~~~~HYdsv~~ 104 (121)
. ..++|+|+|+ |+|||||+.
T Consensus 120 ~--~~~~I~L~Y~-g~HYdsl~~ 139 (212)
T 3by4_A 120 K--FDNYILILFN-GIHYDSLTM 139 (212)
T ss_dssp T--CSEEEEEEEC-SSCEEEEEE
T ss_pred C--CCCeEEEEEc-CCcceEEec
Confidence 3 4678999997 899999998
No 3
>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A
Probab=99.94 E-value=2.9e-27 Score=170.65 Aligned_cols=104 Identities=14% Similarity=0.174 Sum_probs=86.3
Q ss_pred CCCC-hhh-----HHHHHHHHHHHHHhCccccCCCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCc-
Q 033346 1 MYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT- 73 (121)
Q Consensus 1 lyg~-q~~-----h~~lR~~vv~ym~~n~~~f~~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~- 73 (121)
|||+ +.. |.+||+.|++||++|++. .+++++|++||++|+++|+|||++||+|||++|+++|.|++.+.++
T Consensus 51 L~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~Als~~~~v~I~V~~~d~~~~ 128 (185)
T 3phx_A 51 TMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDE 128 (185)
T ss_dssp HSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHHHHHHHHCCCEEEEEC--CCB
T ss_pred HhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHHHHHHHHCCcEEEEEecCCCC
Confidence 4666 555 999999999999999999 3458999999999999999999999999999999999999876543
Q ss_pred --eeEEecCCCCCCCCeEEEEecCCCcccceecCCCC
Q 033346 74 --CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDA 108 (121)
Q Consensus 74 --~~~~~~~~~~~~~~~i~L~y~~~~HYdsv~~~~~~ 108 (121)
..+.+.+. ...++|+|+|++++|||||+++.+-
T Consensus 129 ~~~i~~f~~~--~~~~~I~L~Y~g~~HYdsl~~~~~~ 163 (185)
T 3phx_A 129 VEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQF 163 (185)
T ss_dssp CCEEEEESSC--CTTTSEEEEEETTTEEEEEEECGGG
T ss_pred ceEEEEcCCC--CCCCEEEEEECCCcCchhceECCCC
Confidence 23555543 2368899999888999999988543
No 4
>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}
Probab=99.94 E-value=1.2e-26 Score=171.05 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=88.5
Q ss_pred CCCC-hhh-----HHHHHHHHHHHHHhCccccCCCCcccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecCCC--
Q 033346 1 MYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD-- 72 (121)
Q Consensus 1 lyg~-q~~-----h~~lR~~vv~ym~~n~~~f~~fi~~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~-- 72 (121)
|||+ +.. |.+||+.|++||++|++. .+++++|++||++|+++|+|||++||+|||++|+++|+|++.+.+
T Consensus 51 L~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~AlS~~~~v~I~V~~~d~~g~ 128 (219)
T 3phu_A 51 TMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDE 128 (219)
T ss_dssp HCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHHHHHHHTTCCEEEEEESSSSB
T ss_pred HhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHHHHHHHhCCCEEEEEecCCCC
Confidence 3566 555 999999999999999999 346899999999999999999999999999999999999987654
Q ss_pred c-eeEEecCCCCCCCCeEEEEecCCCcccceecCCCCCC
Q 033346 73 T-CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV 110 (121)
Q Consensus 73 ~-~~~~~~~~~~~~~~~i~L~y~~~~HYdsv~~~~~~p~ 110 (121)
. ..+.+.+. ...++|+|+|++++|||||+++.+-.+
T Consensus 129 ~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~~~ 165 (219)
T 3phu_A 129 VEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFET 165 (219)
T ss_dssp EEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTTCC
T ss_pred ceeEEEecCC--CCCCeEEEEECCCcCchhheECCCCCC
Confidence 2 24555543 236889999988899999999876443
No 5
>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11
Probab=99.86 E-value=1.5e-21 Score=145.18 Aligned_cols=95 Identities=14% Similarity=0.292 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhCccccCCCCcc--cHHHHHH-hcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCceeEE--ecCCCC
Q 033346 9 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE--IMPQHQ 83 (121)
Q Consensus 9 ~~lR~~vv~ym~~n~~~f~~fi~~--~~~~Yl~-~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~~~~~--~~~~~~ 83 (121)
..||..++.||++|+++|+||+++ ++++||+ .|...++||||+||+|||++++++|.|++.+++...+. ..|.
T Consensus 133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~-- 210 (234)
T 1tff_A 133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE-- 210 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC--
T ss_pred HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC--
Confidence 468999999999999999999974 8999999 79999999999999999999999999999776531111 1232
Q ss_pred CCCCeEEEEecCCCcccceecCC
Q 033346 84 APKRELWLSFWSEVHYNSLYDIR 106 (121)
Q Consensus 84 ~~~~~i~L~y~~~~HYdsv~~~~ 106 (121)
...+.|+|+|. ++|||+|++..
T Consensus 211 ~~~~~I~LlY~-pgHYdily~~~ 232 (234)
T 1tff_A 211 AATPSVYLLYK-TSHYNILYAAD 232 (234)
T ss_dssp CSSCSEEEEEE-TTEEEEEEECC
T ss_pred CCCCeEEEEEC-CCCceecccCC
Confidence 24677999997 56999999864
No 6
>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A
Probab=99.85 E-value=5.8e-21 Score=142.02 Aligned_cols=93 Identities=18% Similarity=0.287 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhCccccCCCCcc--cHHHHHH-hcCCCCccCCHHHHHHHHHHhCCcEEEEecCCCc---eeEEecCCC
Q 033346 9 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT---CFIEIMPQH 82 (121)
Q Consensus 9 ~~lR~~vv~ym~~n~~~f~~fi~~--~~~~Yl~-~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~~---~~~~~~~~~ 82 (121)
..+|..++.||++|+++|+||+++ ++++||+ .+..+++||||+||+|||++++++|.|++.+++. ......|.+
T Consensus 136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~ 215 (234)
T 2zfy_A 136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG 215 (234)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT
T ss_pred HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC
Confidence 479999999999999999999974 8999997 6999999999999999999999999999976542 122223433
Q ss_pred CCCCCeEEEEecCCCcccceec
Q 033346 83 QAPKRELWLSFWSEVHYNSLYD 104 (121)
Q Consensus 83 ~~~~~~i~L~y~~~~HYdsv~~ 104 (121)
..+.|+|+|. ++|||+|++
T Consensus 216 --~~p~I~LlY~-pgHYdiLy~ 234 (234)
T 2zfy_A 216 --SEPKVYLLYR-PGHYDILYK 234 (234)
T ss_dssp --CCCSEEEEEE-TTEEEEEEC
T ss_pred --CCCeEEEEEC-CCCcccCCC
Confidence 3567999997 569999985
No 7
>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A
Probab=99.82 E-value=5.3e-20 Score=139.84 Aligned_cols=100 Identities=16% Similarity=0.247 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhCccccCCCCc--ccHHHHHH-hcCCCCccCCHHHHHHHHHHhCCcEEEEecCCC--c--eeEE-ecC
Q 033346 9 KHVRKEVVKQLKDCRSMYEGYVP--MKYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--T--CFIE-IMP 80 (121)
Q Consensus 9 ~~lR~~vv~ym~~n~~~f~~fi~--~~~~~Yl~-~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~--~--~~~~-~~~ 80 (121)
..||..++.||+.|+++|+||++ .++++||+ +|...++||||+||+|||++++++|.|+..+++ + .... + |
T Consensus 171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p 249 (284)
T 4dhi_B 171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P 249 (284)
T ss_dssp HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence 47999999999999999999996 48999999 799999999999999999999999999987642 1 1233 4 6
Q ss_pred CCCC-CCCeEEEEecCCCcccceecCCCCCC
Q 033346 81 QHQA-PKRELWLSFWSEVHYNSLYDIRDAPV 110 (121)
Q Consensus 81 ~~~~-~~~~i~L~y~~~~HYdsv~~~~~~p~ 110 (121)
.+.. ..+.|.|.| +++|||.|++....|.
T Consensus 250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~ 279 (284)
T 4dhi_B 250 SDDQQIAPEITLLY-RPGHYDVIYKKDSTEA 279 (284)
T ss_dssp CCCSCCCCSEEEEE-ETTEEEEEEECC----
T ss_pred CCCCCCCCEEEEee-cCCCccccccCCCCch
Confidence 5532 346799998 5799999999876554
No 8
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A
Probab=99.69 E-value=3.9e-17 Score=129.36 Aligned_cols=95 Identities=19% Similarity=0.288 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHhCccccCCCCcc--cHHHHHH-hcCCCCccCCHHHHHHHHHHhCCcEEEEecCCC---ceeEEecC
Q 033346 7 YHKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD---TCFIEIMP 80 (121)
Q Consensus 7 ~h~~lR~~vv~ym~~n~~~f~~fi~~--~~~~Yl~-~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~~~---~~~~~~~~ 80 (121)
-...||..++.||+.|+++|++|+++ ++++||+ +|...++||||++|+|||++++++|.|+..+++ .......|
T Consensus 299 iv~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~ 378 (399)
T 4ddg_A 299 LVVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFP 378 (399)
T ss_dssp HHHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETT
T ss_pred HHHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCC
Confidence 34589999999999999999999974 8999999 899999999999999999999999999976552 11122334
Q ss_pred CCCCCCCeEEEEecCCCcccceec
Q 033346 81 QHQAPKRELWLSFWSEVHYNSLYD 104 (121)
Q Consensus 81 ~~~~~~~~i~L~y~~~~HYdsv~~ 104 (121)
.+ ..+.|+|.| .++|||.|++
T Consensus 379 ~~--~~~~I~LLY-rPgHYDiLY~ 399 (399)
T 4ddg_A 379 EG--SEPKVYLLY-RPGHYDILYK 399 (399)
T ss_dssp TT--CCCCCEEEE-ETBEEEEEEC
T ss_pred CC--CCCEEEEEE-cCCccccCCC
Confidence 43 357899998 5789999985
No 9
>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A
Probab=97.14 E-value=0.0026 Score=49.67 Aligned_cols=109 Identities=13% Similarity=0.197 Sum_probs=71.3
Q ss_pred CCChhhHHHHHHHHHHHHHhCcc-c-----------cCCCC-----------cccHHHHHHhcCCCCc------c---CC
Q 033346 2 YKSPEYHKHVRKEVVKQLKDCRS-M-----------YEGYV-----------PMKYKRYYKNMAKVGE------W---GD 49 (121)
Q Consensus 2 yg~q~~h~~lR~~vv~ym~~n~~-~-----------f~~fi-----------~~~~~~Yl~~m~~~g~------W---Gg 49 (121)
+|-+++...||++..+-|++... . .+.|. ..+|+.=++.-+.+.. - =-
T Consensus 133 WGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~Iv~~Asp~~~~~~~~~~y~sLE 212 (390)
T 3dkb_A 133 WGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNLIKMASTDTPMARSGLQYNSLE 212 (390)
T ss_dssp HSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHHHHHTSSCCCSSSSSCSSCCCC
T ss_pred cCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHHHHHhCCCCCCCCCcchhhhHH
Confidence 67788889999999999998752 1 23343 1567666655444321 1 23
Q ss_pred HHHHHHHHHHhCCcEEEEecC--CC---ceeE-------EecC----CCCCCCCeEEEEecCCCcccceecCCCCCCC
Q 033346 50 HVTLQAAADKFAAKICLLTSF--RD---TCFI-------EIMP----QHQAPKRELWLSFWSEVHYNSLYDIRDAPVP 111 (121)
Q Consensus 50 ~ieL~Ala~~~~~~I~V~~~~--~~---~~~~-------~~~~----~~~~~~~~i~L~y~~~~HYdsv~~~~~~p~~ 111 (121)
++-+.+||.++++||+|+... ++ ...+ .|.| ...-...+|.|+|.+ +||.+|+.+++.+++
T Consensus 213 eiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~LgY~s-~HFsaLV~me~~~~~ 289 (390)
T 3dkb_A 213 EIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLGYDS-HHFVPLVTLKDSGPE 289 (390)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEEECS-SCEEEEEEBCSSSSC
T ss_pred HHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEEecc-CceeeeeecccCCCC
Confidence 778999999999999999632 11 1001 1222 122346789999975 899999999865443
No 10
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=96.39 E-value=0.03 Score=44.52 Aligned_cols=108 Identities=13% Similarity=0.162 Sum_probs=76.7
Q ss_pred CCCChhhHHHHHHHHHHHHHhCcccc----------------CCCC--c----ccHHHHHHhcCCCCccCCHHHHHHHHH
Q 033346 1 MYKSPEYHKHVRKEVVKQLKDCRSMY----------------EGYV--P----MKYKRYYKNMAKVGEWGDHVTLQAAAD 58 (121)
Q Consensus 1 lyg~q~~h~~lR~~vv~ym~~n~~~f----------------~~fi--~----~~~~~Yl~~m~~~g~WGg~ieL~Ala~ 58 (121)
++|-++....||++..+-|.+....| -.|. + .+|+.=+..-+.+|+==-++-+.+||+
T Consensus 209 mWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv~~As~Pg~sLEeiHIFvLAh 288 (454)
T 3zrh_A 209 TWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFILSLASQPGASLEQTHIFVLAH 288 (454)
T ss_dssp TTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHTTSTTCCCCHHHHHHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 57889999999999999998754322 1343 2 577777887888887777888999999
Q ss_pred HhCCcEEEEecCCCcee-------E----EecCC----CCCCCCeEEEEecCCCcccceecCCCCC
Q 033346 59 KFAAKICLLTSFRDTCF-------I----EIMPQ----HQAPKRELWLSFWSEVHYNSLYDIRDAP 109 (121)
Q Consensus 59 ~~~~~I~V~~~~~~~~~-------~----~~~~~----~~~~~~~i~L~y~~~~HYdsv~~~~~~p 109 (121)
++++||+|+...--..+ + .|.|- ..-...+|.|+|.+ .||.+|+.+++.+
T Consensus 289 VLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~~-gHFsaLV~~~~~~ 353 (454)
T 3zrh_A 289 ILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYTR-GHFSALVAMENDG 353 (454)
T ss_dssp HTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEET-TEEEEEEEBCCC-
T ss_pred HhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEecc-cceeeeeeccccc
Confidence 99999999985311000 1 12221 11246789999975 7999999998653
No 11
>3fz2_A Minor tail protein U; mixed alpha-beta fold, viral protein; 2.70A {Enterobacteria phage lambda} SCOP: d.323.1.1 PDB: 3fzb_A 1z1z_A
Probab=66.66 E-value=2.5 Score=28.41 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=17.3
Q ss_pred CChhhHHHHHHHHHHHHHhCc
Q 033346 3 KSPEYHKHVRKEVVKQLKDCR 23 (121)
Q Consensus 3 g~q~~h~~lR~~vv~ym~~n~ 23 (121)
|+...|.+||++|++-|+++-
T Consensus 1 ~~~~iHt~IR~aVld~L~~~~ 21 (134)
T 3fz2_A 1 GSHMKHTELRAAVLDALEKHD 21 (134)
T ss_dssp --CCHHHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHHHHHhcC
Confidence 566789999999999999984
No 12
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast ST genomics consortium, NESG; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=62.71 E-value=0.025 Score=35.34 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=23.9
Q ss_pred HhCccccCCCCc-ccHHHHHHhcCCCCccCCHHHH
Q 033346 20 KDCRSMYEGYVP-MKYKRYYKNMAKVGEWGDHVTL 53 (121)
Q Consensus 20 ~~n~~~f~~fi~-~~~~~Yl~~m~~~g~WGg~ieL 53 (121)
|++.+-+..||+ .|+|+=+-.|.+++.|||.+.|
T Consensus 27 R~~~~GLs~YVpKKDLEE~VVs~E~~~~WGG~vtL 61 (87)
T 2jn4_A 27 RKTATGHSAYVAKKDLEELIVEMENPALWGGKVTL 61 (87)
T ss_dssp EECSSCEEEEETTTTEEEEEEEESSSSSCSSEEEE
T ss_pred EeCCCceEEEEeCCcchhheeeeecccccCcEEEE
Confidence 455555666775 5666667778899999997654
No 13
>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}
Probab=59.44 E-value=14 Score=25.37 Aligned_cols=48 Identities=13% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHHHHHHhCCcEEEEecCCCceeEEecCCCCCCCCeEEEEecCC--CcccceecC
Q 033346 53 LQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSE--VHYNSLYDI 105 (121)
Q Consensus 53 L~Ala~~~~~~I~V~~~~~~~~~~~~~~~~~~~~~~i~L~y~~~--~HYdsv~~~ 105 (121)
|.|||..|+....+.+.... +.++..+ +...+.|.|..| .||.....+
T Consensus 108 ltaLa~~~~~~c~~hs~~~~---~~~Gi~~--as~~~~I~ht~G~P~HFs~~~~l 157 (160)
T 4a5u_A 108 LTALAHLYNFQATVYSDRGP---ILFGPSD--TIKRIDITHTTGPPSHFSPGKRL 157 (160)
T ss_dssp HHHHHHHHTEEEEEEETTEE---EEESCSS--CSEEEEEEEECSSSCEEEESCCC
T ss_pred HHHHHHHHheEEEEEcCCce---EEeecCC--CceEEEEEeCCCCCCCccCCccc
Confidence 78999999999999986543 6676433 456788888766 799866443
No 14
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=54.06 E-value=4.6 Score=27.37 Aligned_cols=55 Identities=15% Similarity=0.306 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc-----------ccHHHHHHhcCCCC--ccCCHHHHHHHHHHh
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP-----------MKYKRYYKNMAKVG--EWGDHVTLQAAADKF 60 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~-----------~~~~~Yl~~m~~~g--~WGg~ieL~Ala~~~ 60 (121)
..+..||..+.+..++|++.|+.++. ..|..=.++|=.+| +||-=+.|.|+|-.+
T Consensus 37 ~~~~~Lr~~~~ele~~~~~~f~~~~~~l~i~~~~~a~~~f~~Va~elF~dg~inWGRIVal~~F~g~l 104 (157)
T 2vof_A 37 QACRVLQRVAFSVQKEVEKNLKSYLDDFHVESIDTARIIFNQVMEKEFEDGIINWGRIVTIFAFGGVL 104 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTTCCCCSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999998876652 12555566777888 899999999987665
No 15
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=48.66 E-value=5.1 Score=27.07 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCCCC--ccCCHHHHHHHHHHhC
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAKVG--EWGDHVTLQAAADKFA 61 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~~g--~WGg~ieL~Ala~~~~ 61 (121)
.-+..||+.+-+..++|+..|+.++. ..|..=+++|=.+| .||==+.|.|+|-.+-
T Consensus 38 ~~~~~Lr~i~dele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGi~nWGRIValf~F~~~la 105 (157)
T 2nl9_A 38 RALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVA 105 (157)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHCCCSTTCCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHH
Confidence 34678999999999999999987662 23566667777788 5999999999987653
No 16
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=45.61 E-value=7.6 Score=26.39 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCCCC--ccCCHHHHHHHHHHhC
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAKVG--EWGDHVTLQAAADKFA 61 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~~g--~WGg~ieL~Ala~~~~ 61 (121)
+-+..||..+-+..++++..|++.+. ..|..=+++|=++| .||-=+.|.|++-.+-
T Consensus 38 ~~~~~Lr~vgdele~~~~~~f~~m~~~L~it~~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~la 105 (157)
T 4hw4_A 38 KALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVA 105 (157)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCSHHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 45678999999999999999987763 24555566666777 8999999998876554
No 17
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=42.22 E-value=5.3 Score=29.19 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHhCccccCCC
Q 033346 13 KEVVKQLKDCRSMYEGY 29 (121)
Q Consensus 13 ~~vv~ym~~n~~~f~~f 29 (121)
..|++||++|||+|...
T Consensus 34 ~~V~~yL~~~PdFf~~~ 50 (252)
T 3e98_A 34 EQVAAYLSQHPEFFVEH 50 (252)
T ss_dssp -----------------
T ss_pred HHHHHHHHhCCHHHhhC
Confidence 36999999999999765
No 18
>4b4s_A BCL-2-like protein 10; apoptosis; HET: PG4; 1.90A {Homo sapiens}
Probab=41.32 E-value=17 Score=25.12 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc------ccHHHHHHhcCCCC---ccCCHHHHHHHHHHhCCc
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP------MKYKRYYKNMAKVG---EWGDHVTLQAAADKFAAK 63 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~------~~~~~Yl~~m~~~g---~WGg~ieL~Ala~~~~~~ 63 (121)
..+..||..+.+..++|+..|+++.. ..|..=+++|=.+| .||-=+.|.|++-.+-+.
T Consensus 36 ~~aa~LR~va~ele~~~~~~f~~~~~~~~~a~~~f~~Va~~lF~dg~~inWGRIV~l~~F~g~la~~ 102 (175)
T 4b4s_A 36 PEAAVLRSAAARLRQIHRSFFSAYLGYPGNRFELVALMADSVLSDSPGPTWGRVVTLVTFAGTLLER 102 (175)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHTTTTCCSCHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999998874 35555566665565 799999999998776554
No 19
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=39.42 E-value=15 Score=25.75 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=45.0
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCCCC--ccCCHHHHHHHHHHhCC
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAKVG--EWGDHVTLQAAADKFAA 62 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~~g--~WGg~ieL~Ala~~~~~ 62 (121)
+-+..||..+-+..++++..|++.+. ..|..=+++|=++| .||-=+.|.|++-.+-+
T Consensus 71 ~~~~~Lr~vgdEle~~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGi~NWGRIVaLfaFgg~La~ 139 (189)
T 3pk1_A 71 KALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAK 139 (189)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTCCSTTCCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 45678999999999999999987662 35666677787888 79999999988765543
No 20
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=34.27 E-value=22 Score=23.37 Aligned_cols=55 Identities=13% Similarity=0.190 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCC-CCccCCHHHHHHHHHHh
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAK-VGEWGDHVTLQAAADKF 60 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~-~g~WGg~ieL~Ala~~~ 60 (121)
+-+..||..+-+..++|+..|+..+. ..|..=.++|=. .=+||-=+.|.|+|-.+
T Consensus 30 ~~~~~Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~~f~~Va~elF~dGinWGRIValf~F~g~l 95 (144)
T 2w3l_A 30 VVHKTLREAGDDFSRRYRRDFAEMSSGLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVM 95 (144)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTCCCCTTTHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 45678999999999999998865441 234444444333 34899999999887765
No 21
>2pst_X Hypothetical protein PA2412; pyoverdine synthesis, non-ribosomal peptide synthesis cluste like family, COG3251, unknown function; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: d.100.2.1 PDB: 2gpf_A
Probab=33.85 E-value=19 Score=21.53 Aligned_cols=17 Identities=6% Similarity=0.208 Sum_probs=14.7
Q ss_pred HHHHHHHHHhCccccCC
Q 033346 12 RKEVVKQLKDCRSMYEG 28 (121)
Q Consensus 12 R~~vv~ym~~n~~~f~~ 28 (121)
|+.|.+||++|..+..|
T Consensus 46 r~~CL~yIe~~WtDmRP 62 (74)
T 2pst_X 46 KKDCLAYIEEVWTDMRP 62 (74)
T ss_dssp HHHHHHHHHHHCCCCSC
T ss_pred HHHHHHHHHHHcccCCc
Confidence 89999999999887654
No 22
>2lpd_A Uncharacterized protein; infectious disease, melioidosis, seattle structural genomics for infectious disease, ssgcid, drug target; NMR {Burkholderia pseudomallei}
Probab=31.06 E-value=29 Score=21.76 Aligned_cols=18 Identities=0% Similarity=0.097 Sum_probs=15.5
Q ss_pred HHHHHHHHHhCccccCCC
Q 033346 12 RKEVVKQLKDCRSMYEGY 29 (121)
Q Consensus 12 R~~vv~ym~~n~~~f~~f 29 (121)
|+.|.+||+++..+..|-
T Consensus 59 r~~CL~yIe~~WTDMRP~ 76 (95)
T 2lpd_A 59 KQQCLQRIEQLWTDMVPA 76 (95)
T ss_dssp HHHHHHHHHTTTTTCCCT
T ss_pred HHHHHHHHHHHccCCCch
Confidence 899999999999877653
No 23
>1o0l_A Apoptosis regulator BCL-W; helical bundle, binding groove, BH3; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=30.64 E-value=32 Score=23.76 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcC-CCCccCCHHHHHHHHHHh
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMA-KVGEWGDHVTLQAAADKF 60 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~-~~g~WGg~ieL~Ala~~~ 60 (121)
+-+..||+.+-+..++|++.|...+. ..|..=.++|= +.=+||-=+.|.|++-.+
T Consensus 46 ~v~~~Lr~~gdele~~~~~~f~~~~~~l~i~~~~~~~~F~~Va~elF~dGinWGRIValfaF~g~L 111 (188)
T 1o0l_A 46 PLHQAMRAAGDEFETRFRRTFSDLAAQLHVTPGSAQQRFTQVSDELFQGGPNWGRLVAFFVFGAAL 111 (188)
T ss_dssp TTHHHHHHHHHHHHHHCSCSHHHHHHHTTTCSSTTHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999876652 23445455544 334799988888887655
No 24
>2khr_A Protein MBTH; siderophores, mycobactin, MTBH-like, 2-hydroxyphenyloxazolin tuberculosis, biosynthetic protein, structural genomics; NMR {Mycobacterium tuberculosis}
Probab=30.52 E-value=20 Score=21.48 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=15.1
Q ss_pred HHHHHHHHHhCccccCCC
Q 033346 12 RKEVVKQLKDCRSMYEGY 29 (121)
Q Consensus 12 R~~vv~ym~~n~~~f~~f 29 (121)
|+.|.+||++|..+..|-
T Consensus 48 r~~CL~yIe~~WtDmRP~ 65 (74)
T 2khr_A 48 RAACLDYVEKNWTDLRPK 65 (74)
T ss_dssp HHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHhhhcCCCch
Confidence 899999999998776653
No 25
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=29.84 E-value=20 Score=23.47 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=19.2
Q ss_pred CCCChhhHHHHHHHHHHHHHhCc
Q 033346 1 MYKSPEYHKHVRKEVVKQLKDCR 23 (121)
Q Consensus 1 lyg~q~~h~~lR~~vv~ym~~n~ 23 (121)
|||+. ...+||...+++|++.+
T Consensus 22 LY~~~-FPiEvRhyLA~WIE~q~ 43 (124)
T 1bgf_A 22 FYDDN-FPMEIRHLLAQWIETQD 43 (124)
T ss_dssp GCBTT-BCHHHHHHTHHHHHHSC
T ss_pred Hhccc-CCHHHHHHHHHHHHhcc
Confidence 58754 89999999999999986
No 26
>2wh6_A Early antigen protein R; mitochondrion, early protein, transmembrane, viral protein,; 1.50A {Human herpesvirus 4} PDB: 2v6q_A 2xpx_A 1q59_A
Probab=29.42 E-value=23 Score=24.61 Aligned_cols=55 Identities=5% Similarity=0.059 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCCCC--ccCCHHHHHHH-HHHhC
Q 033346 7 YHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAKVG--EWGDHVTLQAA-ADKFA 61 (121)
Q Consensus 7 ~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~~g--~WGg~ieL~Al-a~~~~ 61 (121)
.+..|++..-+-+.+|.+.|...+. ..|..=.++|=++| +||-=+.|-|+ +-.+.
T Consensus 59 ~~~rL~~~leeI~~~~~~~F~~ml~rl~~s~~ta~~~F~~VA~ELF~dG~INWGRIVALfaF~~~al~ 126 (173)
T 2wh6_A 59 VVLRYHVLLEEIIERNSETFTETWNRFITHTEHVDLDFNSVFLEIFHRGDPSLGRALAWMAWCMHACR 126 (173)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHhCCCCCcceehhhhhhccccee
Confidence 3445666666666777887776552 57777788888998 89999999988 55443
No 27
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=29.38 E-value=20 Score=16.73 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=9.8
Q ss_pred ecCCCCCCCCCccc-cccc
Q 033346 103 YDIRDAPVPKKPRK-KHWL 120 (121)
Q Consensus 103 ~~~~~~p~~~~~~~-~~~~ 120 (121)
..+-++..+ +||| ..|+
T Consensus 7 mditdinap-kpkkk~rws 24 (26)
T 2yvc_D 7 MDITDINAP-KPKKKQRXX 24 (26)
T ss_pred cccccccCC-Ccchhhccc
Confidence 345566666 5555 5676
No 28
>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 3pl7_A 3qkd_A* 1g5j_A 2lp8_A* 2lpc_A
Probab=29.26 E-value=40 Score=24.16 Aligned_cols=55 Identities=9% Similarity=0.191 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCCC-CccCCHHHHHHHHHHh
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAKV-GEWGDHVTLQAAADKF 60 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~~-g~WGg~ieL~Ala~~~ 60 (121)
.-+..||..+-+..++++..|..+.. ..|..=.++|=++ =+||-=+.|.|++-.+
T Consensus 85 ~v~~~Lr~lgdElE~~~~~~f~~m~~qL~it~~~a~~~F~~Va~elF~DGINWGRIVaLfaF~g~L 150 (218)
T 1r2d_A 85 AVKQALREAGDEFELRYRRAFSDLTSQLHITPGTAYQSFEQVVNELFRDGVNWGRIVAFFSFGGAL 150 (218)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTHHHHHHHCCCTTCCHHHHHHHHGGGGTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 45678999999999999999988762 2344444443333 4899999999987655
No 29
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=29.12 E-value=40 Score=22.67 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=27.6
Q ss_pred HHHHHHHHhCccccCCCCc-------ccHHHHHHhcCCCCccCCHH
Q 033346 13 KEVVKQLKDCRSMYEGYVP-------MKYKRYYKNMAKVGEWGDHV 51 (121)
Q Consensus 13 ~~vv~ym~~n~~~f~~fi~-------~~~~~Yl~~m~~~g~WGg~i 51 (121)
..+++||..||-.= ..+. .++-.|+.+=.-|..|||+.
T Consensus 110 ~~~~~YI~~NPVra-glV~~~~dw~~SS~~~~v~~g~~p~dW~~~~ 154 (165)
T 4er8_A 110 RHHVDYIYINPVKH-GWVKQVSDWPFSTFHRDVARGLYPIDWAGDV 154 (165)
T ss_dssp HHHHHHHHHHHHHT-TSCSSGGGCCSBSHHHHHHTTSSCTTCCCCC
T ss_pred HHHHHHHHhCHHhh-cccCChhhCCcccHHHHHhCCCCCCCCCCCC
Confidence 56889999999642 2221 67888988766788899863
No 30
>3tac_B Liprin-alpha-2; transferase-protein binding complex; 2.20A {Homo sapiens} PDB: 3tad_A
Probab=28.92 E-value=28 Score=26.68 Aligned_cols=32 Identities=19% Similarity=0.312 Sum_probs=28.8
Q ss_pred ccHHHHHHhcCCCCccCCHHHH------HHHHHHhCCc
Q 033346 32 MKYKRYYKNMAKVGEWGDHVTL------QAAADKFAAK 63 (121)
Q Consensus 32 ~~~~~Yl~~m~~~g~WGg~ieL------~Ala~~~~~~ 63 (121)
-++.+|..++..+|..|+=+.| .+||.++++|
T Consensus 261 IdL~EYA~NL~~SGVHGal~~Le~~F~~~~lA~~L~IP 298 (334)
T 3tac_B 261 IGLREYANNILESGVHGSLIALDENFDYSSLALLLQIP 298 (334)
T ss_dssp TTCHHHHGGGTTSCCCHHHHHHCTTCCHHHHHHHTTCC
T ss_pred cChHHhhhhhhhcCccceeeeccCCCCHHHHHHHhCCC
Confidence 5889999999999999999887 7889999876
No 31
>2xa0_A BCL-2, apoptosis regulator BCL-2; cell death; 2.70A {Homo sapiens} PDB: 1gjh_A 1ysw_A* 2o21_A* 2o22_A* 1g5m_A
Probab=27.89 E-value=49 Score=23.45 Aligned_cols=55 Identities=11% Similarity=0.157 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhc-CCCCccCCHHHHHHHHHHh
Q 033346 6 EYHKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNM-AKVGEWGDHVTLQAAADKF 60 (121)
Q Consensus 6 ~~h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m-~~~g~WGg~ieL~Ala~~~ 60 (121)
+-+..||...-+..++++..|+..+. ..|..=.++| ++.=+||-=+.|.|++-.+
T Consensus 92 ~v~~~Lr~lgdEle~~~~~~F~~m~~qL~it~~~a~~~F~~Va~elF~DGiNWGRIVaLfaF~g~L 157 (207)
T 2xa0_A 92 VVHLTLRQAGDDFSRRYRRDFAEMSSQLHLTPFTARGRFATVVEELFRDGVNWGRIVAFFEFGGVM 157 (207)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSCCGGGTCCCCTTTHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCcchHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 55678999999999999999998873 2333333442 2334899999999987666
No 32
>1k3k_A Functional anti-apoptotic factor VBCL-2 homolog; solution structure, apoptosis; NMR {Human herpesvirus 8} SCOP: f.1.4.1
Probab=27.69 E-value=20 Score=24.39 Aligned_cols=51 Identities=12% Similarity=0.273 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCCCC--ccCCHHHHHHHHHHh
Q 033346 10 HVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAKVG--EWGDHVTLQAAADKF 60 (121)
Q Consensus 10 ~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~~g--~WGg~ieL~Ala~~~ 60 (121)
.+++++-+-+++++..|+.++. ..|..=.++|=.+| .||-=+.|.|+|-.+
T Consensus 35 ~~k~~~~el~~~~~~~F~~m~~~l~i~~~~~~~~F~~Va~elF~DG~iNWGRIVaLfaF~g~l 97 (158)
T 1k3k_A 35 PIKLYITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDGNMNWGRALAILTFGSFV 97 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHTHHHHHCSSCSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 4667777888888888888773 23444456677888 999999999987665
No 33
>1mdc_A Insect fatty acid binding protein; HET: PLM; 1.75A {Manduca sexta} SCOP: b.60.1.2
Probab=27.07 E-value=1.3e+02 Score=19.37 Aligned_cols=33 Identities=9% Similarity=-0.071 Sum_probs=25.4
Q ss_pred ccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecC
Q 033346 32 MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF 70 (121)
Q Consensus 32 ~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~ 70 (121)
++|++|+..| |=...+..+|...+-.+.|-+.+
T Consensus 14 eNfdeylkal------Gv~~~~rk~a~~~kp~~ei~~~G 46 (132)
T 1mdc_A 14 ENFDGFLKSA------GLSDDKIQALVSDKPTQKMEANG 46 (132)
T ss_dssp ESHHHHHHTT------TCCHHHHHHHHHCCCEEEEEEET
T ss_pred cCHHHHHHHh------CCCHHHHhhhccCCceEEEEEeC
Confidence 6899999998 34478888898888666666644
No 34
>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.16 E-value=1.3e+02 Score=18.72 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCcEEEEecCCCceeEEecC
Q 033346 50 HVTLQAAADKFAAKICLLTSFRDTCFIEIMP 80 (121)
Q Consensus 50 ~ieL~Ala~~~~~~I~V~~~~~~~~~~~~~~ 80 (121)
.-||.||..+|.-.+.++......+.+.+.+
T Consensus 16 ~~EleaL~sIy~d~~~~~~~~~~~~~i~i~~ 46 (128)
T 2ebm_A 16 RNELEALESIYPDSFTVLSENPPSFTITVTS 46 (128)
T ss_dssp HHHHHHHHHHCSSSEEECCSSSCEEEECCBC
T ss_pred HHHHHHHHHHccCceEEccCCCCEEEEEEec
Confidence 4589999999998888876433333344433
No 35
>1fdq_A Fatty acid-binding protein, brain; omega-3, long chain poly unsaturated fatty acid, lipid binding protein; HET: HXA; 2.10A {Homo sapiens} SCOP: b.60.1.2 PDB: 1fe3_A* 1jjx_A
Probab=23.47 E-value=1.2e+02 Score=19.53 Aligned_cols=33 Identities=9% Similarity=0.191 Sum_probs=25.8
Q ss_pred ccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecC
Q 033346 32 MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF 70 (121)
Q Consensus 32 ~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~ 70 (121)
++|++|+..| |=...+..+|...+-.+.|-+.+
T Consensus 14 eNfdeylkal------Gv~~~~rk~a~~~kp~~ei~~~G 46 (131)
T 1fdq_A 14 QNFDEYMKAL------GVGFATRQVGNVTKPTVIISQEG 46 (131)
T ss_dssp ESHHHHHHHT------TCCHHHHHHHHHCCCEEEEEEET
T ss_pred cCHHHHHHHc------CCCHHHHHHHhcCCCeEEEEEcC
Confidence 7899999998 34478888888888777766644
No 36
>1crb_A Cellular retinol binding protein; cellular lipophilic transport protein; HET: RTL; 2.10A {Rattus rattus} SCOP: b.60.1.2 PDB: 1mx7_A 1mx8_A* 1jbh_A 1kgl_A*
Probab=23.13 E-value=1.1e+02 Score=19.71 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=25.9
Q ss_pred ccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecC
Q 033346 32 MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF 70 (121)
Q Consensus 32 ~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~ 70 (121)
++|++|+..| |=...+..+|...+-.+.|-+.+
T Consensus 14 eNfdeylkal------Gv~~~~rk~a~~~kp~~ei~~~G 46 (134)
T 1crb_A 14 ENFEEYLRAL------DVNVALRKIANLLKPDKEIVQDG 46 (134)
T ss_dssp ESHHHHHHTT------TCCHHHHHHHHHCCCEEEEEEET
T ss_pred cCHHHHHHHc------CCCHHHHHHhhcCCceEEEEEcC
Confidence 7999999998 34478888888888777776654
No 37
>2ims_A Apoptosis regulator BAK; dimer; 1.48A {Homo sapiens} PDB: 2imt_A 2jcn_A 2yv6_A 3qbr_B* 2xpx_B 2jby_B 2voh_B*
Probab=22.93 E-value=24 Score=24.01 Aligned_cols=53 Identities=9% Similarity=0.139 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCccccCCCCc----------ccHHHHHHhcCCC-CccCCHHHHHHHHHHh
Q 033346 8 HKHVRKEVVKQLKDCRSMYEGYVP----------MKYKRYYKNMAKV-GEWGDHVTLQAAADKF 60 (121)
Q Consensus 8 h~~lR~~vv~ym~~n~~~f~~fi~----------~~~~~Yl~~m~~~-g~WGg~ieL~Ala~~~ 60 (121)
+..||..+-+..++|+..|+..+. ..|..=.++|=++ =+||-=+.|.|++-.+
T Consensus 60 ~~~Lr~~gdele~~~~~~f~~m~~~l~~~~~~~~~~f~~Va~elF~dGinWGRIVal~~F~g~l 123 (171)
T 2ims_A 60 GRQLAIIGDDINRRYDSEFQTMLQHLQPTAENAYEYFTKIATSLFESGINWGRVVALLGFGYRL 123 (171)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHcCCCcccHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 457899999999999999987752 2343444454443 4799999999887665
No 38
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=21.45 E-value=67 Score=18.13 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=20.1
Q ss_pred HHHhcCCC-CccCCHHHHHHHHHHhCCcEEE
Q 033346 37 YYKNMAKV-GEWGDHVTLQAAADKFAAKICL 66 (121)
Q Consensus 37 Yl~~m~~~-g~WGg~ieL~Ala~~~~~~I~V 66 (121)
++.++.+. ..--.--.|..+|++|++++.-
T Consensus 39 ~is~~E~G~~~~p~~~~l~~ia~~l~v~~~~ 69 (78)
T 3qq6_A 39 YLSSIERNLQTNPSIQFLEKVSAVLDVSVHT 69 (78)
T ss_dssp HHHHHHTTSCCCCBHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHCcCHHH
Confidence 45555543 3445666789999999987643
No 39
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=21.39 E-value=49 Score=21.11 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=23.2
Q ss_pred HHHHhcCCCCc-cCCHHHHHHHHHHhCCcEEEEe
Q 033346 36 RYYKNMAKVGE-WGDHVTLQAAADKFAAKICLLT 68 (121)
Q Consensus 36 ~Yl~~m~~~g~-WGg~ieL~Ala~~~~~~I~V~~ 68 (121)
.|+..+.+... --.--.|.++|+.|+|++--+.
T Consensus 44 s~is~iE~G~r~~Ps~~~l~~iA~~f~V~~~yl~ 77 (123)
T 3qwg_A 44 PYLSQLRSGNRTNPSGATMAALANFFRIKAAYFT 77 (123)
T ss_dssp HHHHHHHHTSSCCCCHHHHHHHHHHTTSCTHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHhCCCHHHHc
Confidence 57777755332 3455679999999999976554
No 40
>3skq_A Mitochondrial distribution and morphology protein; 14-3-3-like membrane protein, mitochondrial ribosome, respir chain biogenesis; 2.10A {Saccharomyces cerevisiae}
Probab=21.25 E-value=93 Score=22.79 Aligned_cols=57 Identities=16% Similarity=0.205 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhCccccCCC----Cc-----ccHHHHHHhcCCCCc----cCCHHHHHHHHHHhCCcE
Q 033346 8 HKHVRKEVVKQLKDCRSMYEGY----VP-----MKYKRYYKNMAKVGE----WGDHVTLQAAADKFAAKI 64 (121)
Q Consensus 8 h~~lR~~vv~ym~~n~~~f~~f----i~-----~~~~~Yl~~m~~~g~----WGg~ieL~Ala~~~~~~I 64 (121)
-..+|..++++|.+.-+.-.-. +. ..|.+++.+++..|+ +=..-||.++|.+|+-+.
T Consensus 24 ll~~r~e~a~FLq~tl~e~~~~~~~~~~~~~~~~~f~~f~~Kvr~~~e~~~~~ps~eeIl~vaklF~de~ 93 (249)
T 3skq_A 24 LIEIRKKTSEFLHETLEESNLITYNTIENAEKKQKFLNFFRKLYSAKEGKIMTFQHDEISAIAQMFKNDS 93 (249)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCGGGCSSHHHHHHHHHHHHHHHTCBTTBCEEEEHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHhcCCCc
Confidence 3678999999999864432211 11 569999999976542 336788999999998776
No 41
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent, mono-oxygenases, oxidoreductase; HET: HEM; 2.00A {Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Probab=20.91 E-value=45 Score=25.36 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=40.2
Q ss_pred ChhhHHHHHHHHHHHHHhCc-cccCCCCcccHHHHHHhcCCCCc------cCCHHHHHHHHHHhCCc
Q 033346 4 SPEYHKHVRKEVVKQLKDCR-SMYEGYVPMKYKRYYKNMAKVGE------WGDHVTLQAAADKFAAK 63 (121)
Q Consensus 4 ~q~~h~~lR~~vv~ym~~n~-~~f~~fi~~~~~~Yl~~m~~~g~------WGg~ieL~Ala~~~~~~ 63 (121)
|...|..+|+.+........ ..+++.|..-.++.++++...|+ ++..+.+.+++.+++++
T Consensus 105 D~p~H~r~Rrll~~~Fs~~~l~~~~~~i~~~~~~lld~l~~~g~~D~v~~~a~~l~~~vi~~llg~~ 171 (417)
T 4dxy_A 105 DPPEHTPYRKALDKGLNLAKIRKVEDKVREVASSLIDSFAARGECDFAAEYAELFPVHVFMALADLP 171 (417)
T ss_dssp CTTTHHHHHHHHHHHHCHHHHHTTHHHHHHHHHHHHHHHHTTSEEEHHHHTTTTHHHHHHHHHTTCC
T ss_pred CcHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeHHHHHhhhHHHHHHHHcCCC
Confidence 66789999999887664332 34566666666677777766553 34455667777777765
No 42
>1b56_A Fatty acid binding protein; lipid-binding, fatty acid transport, beta barrel, lipid binding protein; HET: PLM; 2.05A {Homo sapiens} SCOP: b.60.1.2 PDB: 1jjj_A
Probab=20.66 E-value=1.3e+02 Score=19.32 Aligned_cols=33 Identities=12% Similarity=0.198 Sum_probs=25.8
Q ss_pred ccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecC
Q 033346 32 MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF 70 (121)
Q Consensus 32 ~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~ 70 (121)
++|++|+..+ |=...+..+|...+-.+.|-+.+
T Consensus 17 eNfdeylkal------Gv~~~~rk~a~~~kp~~ei~~~G 49 (135)
T 1b56_A 17 KGFDEYMKEL------GVGIALRKMGAMAKPDCIITCDG 49 (135)
T ss_dssp CSHHHHHHHH------TCCHHHHHHHHHCCCEEEEEEET
T ss_pred cCHHHHHHHc------CCCHHHHHHhhcCCcEEEEEEcC
Confidence 7999999998 34567888888888777776644
No 43
>1mvg_A Liver basic fatty acid binding protein; beta-barrel, calycin, ten antiparallel beta strands, helix- turn-helix motif, transport protein; NMR {Gallus gallus} SCOP: b.60.1.2 PDB: 1tvq_A 1tw4_A* 1zry_A 2jn3_A* 2k62_A*
Probab=20.43 E-value=1.3e+02 Score=19.23 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=25.0
Q ss_pred ccHHHHHHhcCCCCccCCHHHHHHHHHHhCCcEEEEecC
Q 033346 32 MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF 70 (121)
Q Consensus 32 ~~~~~Yl~~m~~~g~WGg~ieL~Ala~~~~~~I~V~~~~ 70 (121)
++|++|+..|. =...+..+|...+-.+.|-+.+
T Consensus 12 eNfdeylkalG------v~~~~rk~a~~~kp~~ei~~~G 44 (125)
T 1mvg_A 12 ENYEEFLKALA------LPEDLIKMARDIKPIVEIQQKG 44 (125)
T ss_dssp ESHHHHHHHSS------SCHHHHHHHHTCCCEEEEEEET
T ss_pred cCHHHHHHHcC------CCHHHHHhhccCCcEEEEEEeC
Confidence 68999999983 3467888888888666666544
No 44
>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}
Probab=20.38 E-value=23 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=27.6
Q ss_pred ccHHHHHHhcCCCCccCCHHHH------HHHHHHhCCc
Q 033346 32 MKYKRYYKNMAKVGEWGDHVTL------QAAADKFAAK 63 (121)
Q Consensus 32 ~~~~~Yl~~m~~~g~WGg~ieL------~Ala~~~~~~ 63 (121)
-++.+|..+++.+|..|+=+.| .+||.+++.|
T Consensus 190 i~L~eya~NL~~sGvhGal~~le~~F~~~~lA~~L~iP 227 (265)
T 3tad_C 190 VDLAEYAPNLRGSGVHGGLMVLEPRFNVETMAQLLNIP 227 (265)
T ss_dssp TTCTTTGGGGTTSCCCHHHHHHCTTCCHHHHHHHTTCC
T ss_pred CCHHHHHhHhhhcCccchhhhccCCCCHHHHHHHhCCC
Confidence 4778899999999999998875 7888888876
Done!