Query 033347
Match_columns 121
No_of_seqs 76 out of 78
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09991 DUF2232: Predicted me 99.4 1.8E-11 3.9E-16 95.6 13.1 101 1-101 33-133 (290)
2 COG4241 Predicted membrane pro 99.1 3E-11 6.4E-16 100.2 1.4 113 1-113 136-265 (314)
3 TIGR02357 thia_yuaJ probable p 95.9 0.3 6.5E-06 37.7 12.0 97 1-98 44-164 (183)
4 PF09515 Thia_YuaJ: Thiamine t 92.4 1.2 2.6E-05 34.4 8.4 82 1-85 40-145 (177)
5 TIGR02359 thiW thiW protein. L 83.3 18 0.00039 27.6 11.6 77 4-82 46-123 (160)
6 COG4241 Predicted membrane pro 81.3 1.4 3E-05 37.3 2.8 96 2-98 48-144 (314)
7 PF07155 ECF-ribofla_trS: ECF- 80.4 20 0.00043 26.2 12.0 47 3-49 49-96 (169)
8 PRK03072 heat shock protein Ht 76.5 34 0.00074 27.9 9.5 76 26-109 8-90 (288)
9 PRK03982 heat shock protein Ht 74.2 29 0.00064 28.0 8.5 82 27-109 6-88 (288)
10 PRK03001 M48 family peptidase; 65.6 38 0.00083 27.3 7.4 83 26-109 4-87 (283)
11 PF07456 Hpre_diP_synt_I: Hept 57.5 81 0.0018 23.8 10.6 80 2-81 39-121 (148)
12 PRK14218 camphor resistance pr 57.0 51 0.0011 24.2 6.2 46 50-95 4-53 (133)
13 PF02535 Zip: ZIP Zinc transpo 50.5 90 0.002 24.5 7.1 64 12-78 216-287 (317)
14 PF12822 DUF3816: Protein of u 50.5 93 0.002 22.4 12.1 51 3-53 42-100 (172)
15 PF13301 DUF4079: Protein of u 48.9 24 0.00052 27.2 3.5 33 22-54 4-36 (175)
16 PF06738 DUF1212: Protein of u 47.6 1.1E+02 0.0025 22.6 9.7 85 27-114 102-186 (193)
17 COG1266 Predicted metal-depend 47.0 83 0.0018 22.9 6.0 55 9-63 156-211 (226)
18 PRK09272 hypothetical protein; 46.3 1.1E+02 0.0024 22.0 6.4 44 29-72 63-106 (109)
19 PF13858 DUF4199: Protein of u 46.0 1.1E+02 0.0024 21.9 13.7 45 50-95 61-106 (163)
20 PF13829 DUF4191: Domain of un 36.0 1.6E+02 0.0034 23.9 6.4 38 37-80 40-77 (224)
21 COG3859 Predicted membrane pro 33.9 2.4E+02 0.0052 22.4 8.7 45 2-49 50-101 (185)
22 PRK13661 hypothetical protein; 31.2 2.5E+02 0.0054 21.7 12.3 85 4-88 52-146 (182)
23 PF05957 DUF883: Bacterial pro 30.9 62 0.0013 21.8 2.9 25 22-49 70-94 (94)
24 PRK04897 heat shock protein Ht 30.1 3.1E+02 0.0066 22.4 8.7 70 37-109 26-100 (298)
25 PF04306 DUF456: Protein of un 29.8 2.3E+02 0.0049 20.8 9.7 48 4-57 60-108 (140)
26 COG4575 ElaB Uncharacterized c 29.7 56 0.0012 23.6 2.6 22 49-73 80-101 (104)
27 TIGR00751 menA 1,4-dihydroxy-2 29.6 3.1E+02 0.0067 22.3 8.5 45 15-59 93-138 (284)
28 smart00730 PSN Presenilin, sig 29.5 89 0.0019 25.1 4.0 38 10-47 212-249 (249)
29 PRK05457 heat shock protein Ht 26.2 3.6E+02 0.0078 21.9 9.1 57 52-109 33-97 (284)
30 PF00375 SDF: Sodium:dicarboxy 25.3 4.1E+02 0.0088 22.3 8.1 72 27-98 178-254 (390)
31 PF09991 DUF2232: Predicted me 24.5 3.3E+02 0.0071 20.9 11.1 93 2-94 38-130 (290)
32 PF05915 DUF872: Eukaryotic pr 22.4 2.1E+02 0.0044 20.7 4.4 28 53-80 41-68 (115)
33 PF04892 VanZ: VanZ like famil 22.2 2.7E+02 0.0058 19.1 5.6 46 27-72 53-98 (133)
34 KOG1629 Bax-mediated apoptosis 21.3 3.9E+02 0.0085 21.8 6.2 80 1-81 49-133 (235)
35 PF05684 DUF819: Protein of un 20.9 5.2E+02 0.011 22.1 7.2 56 31-86 59-118 (378)
36 TIGR03008 pepcterm_CAAX CAAX p 20.4 3.5E+02 0.0076 21.5 5.8 49 8-62 157-205 (222)
37 PF03729 DUF308: Short repeat 20.3 2.1E+02 0.0046 17.1 5.1 37 32-69 32-70 (72)
No 1
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=99.36 E-value=1.8e-11 Score=95.60 Aligned_cols=101 Identities=32% Similarity=0.529 Sum_probs=97.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033347 1 MRWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRE 80 (121)
Q Consensus 1 lR~G~raa~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~ge 80 (121)
+|||.|.+..+.++++++...+.||..+..+.+.+++.|+.+|++.||++|+..++..++.+..++....+.+.+...|+
T Consensus 33 ~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 112 (290)
T PF09991_consen 33 LRYGLKYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGI 112 (290)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHc
Q 033347 81 NILALITINIHASLTFIFSAA 101 (121)
Q Consensus 81 Nl~~~~~~~~~~~Ld~~~~~l 101 (121)
|+.++..+++++..|+.....
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~ 133 (290)
T PF09991_consen 113 NIFEQLIEQIQESIEQVLKIY 133 (290)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887655
No 2
>COG4241 Predicted membrane protein [Function unknown]
Probab=99.08 E-value=3e-11 Score=100.18 Aligned_cols=113 Identities=13% Similarity=0.071 Sum_probs=106.4
Q ss_pred CcchhHHHHHHHHHHH---------HHHHH----HhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHH
Q 033347 1 MRWGVAAGRKTMVATA---------MLLLV----LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGA 67 (121)
Q Consensus 1 lR~G~raa~~~~vvt~---------lLL~v----L~GPlral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~ 67 (121)
+||+.+++++.+..+| +..++ .+||.|...+..+|+.++...|.+|-||.+|..+...+.....++.
T Consensus 136 ~Rqsl~~a~~~~i~~G~~~~~~l~iLees~~~~~~lgP~~ivi~~~i~a~~t~~vg~pilrR~~~~v~~~~p~~~~~f~~ 215 (314)
T COG4241 136 LRQSLNAAIKMAIAAGNNVDDALKILEESFTQQLYLGPGRIVIFGTIFALMTLLVGFPILRRLKIKVPIFLPFRNWTFPN 215 (314)
T ss_pred HHhhhHHHHHHHHHccCChHHHHHHHHHHHhhHHhhCCceeehhHHHHHHHHHHHhHHHHHhCCccCCCccceeeEeech
Confidence 4999999999999999 99999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHcC--CCCCC--CHHHHH
Q 033347 68 MGYILTSSFLIRENILALITINIHASLTFIFSAAG--VNIVP--SMNVIY 113 (121)
Q Consensus 68 ~~~v~l~s~L~geNl~~~~~~~~~~~Ld~~~~~lg--~~~~P--~~~~v~ 113 (121)
.++++..+++++||+|++...|+.++.+|-+...+ +..+| |.-..|
T Consensus 216 ~fl~~ylivv~~~~l~~~~~gqv~~~I~wnfl~vl~l~l~iqGlSvI~~y 265 (314)
T COG4241 216 SFLFWYLIVVCLELLWKYENGQVTYSIYWNFLMVLGLLLAIQGLSVIFFY 265 (314)
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHhccccceeeeh
Confidence 99999999999999999999999999999999888 77777 444333
No 3
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ. Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.
Probab=95.90 E-value=0.3 Score=37.73 Aligned_cols=97 Identities=19% Similarity=0.186 Sum_probs=60.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHH-----hhhhHHHH-HHHHHHHHHHHhHHHhhcCC---------chHHHHHHHHHHHHH
Q 033347 1 MRWGVAAGRKTMVATAMLLLVL-----SGPVKALA-YLLTHGVLGFSMGSLWRLGV---------DWGLSIFLCTIARSA 65 (121)
Q Consensus 1 lR~G~raa~~~~vvt~lLL~vL-----~GPlral~-~l~~~GllGl~LG~~w~~~~---------sw~~si~~gal~~~~ 65 (121)
.|||.|+|.....+.|++=.+. ..|++.+. |.++|+++|+ -|...|+.. +=...+..|++++++
T Consensus 44 ~~~Gp~~G~~~G~i~Gll~~~~g~~~~~~p~q~~ldy~~a~~~iGl-aGl~~~~~~k~~~~~~~~~~~~~i~~g~iv~~~ 122 (183)
T TIGR02357 44 FRRGLKAGLVAGLIWGLLKIILGTAYILHPVQVLLDYILAFMALGL-AGVFRIKKKLAFQSNTKKKAIVKIILGSLVASL 122 (183)
T ss_pred HHHccHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccchhhHHHHHHHHHHHHHH
Confidence 3899999999999888766554 22557666 8999999999 777776542 224555666666555
Q ss_pred HHHHHHHHHHHH-------hhccHHHHH--HHHHHHHHHHHH
Q 033347 66 GAMGYILTSSFL-------IRENILALI--TINIHASLTFIF 98 (121)
Q Consensus 66 g~~~~v~l~s~L-------~geNl~~~~--~~~~~~~Ld~~~ 98 (121)
.......++-.+ -|.|+|.|. .+..+...|.++
T Consensus 123 ~r~~~~~i~g~iffg~yAp~g~~~~~ysl~yn~~~~~~e~ii 164 (183)
T TIGR02357 123 LRYFWHFIAGVIFWGSYAPKGMSAWLYSLIYNGSSALVEALI 164 (183)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHH
Confidence 444443333332 367888543 334444444443
No 4
>PF09515 Thia_YuaJ: Thiamine transporter protein (Thia_YuaJ); InterPro: IPR012651 Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Streptococcus mutans and Streptococcus pyogenes), YuaJ is the only THI-regulated gene. The thiamine transporter YuaJ, also known as ThiT, is a member of the energy coupling factor (ECF) transporters, a new class of transport proteins that shares some resemblance with ABC transporters [, ]. ; PDB: 3RLB_B.
Probab=92.43 E-value=1.2 Score=34.44 Aligned_cols=82 Identities=27% Similarity=0.222 Sum_probs=43.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhh------hHHH-HHHHHHHHHHHHhHHHhhc-------C---CchHHHHHHHHHHH
Q 033347 1 MRWGVAAGRKTMVATAMLLLVLSGP------VKAL-AYLLTHGVLGFSMGSLWRL-------G---VDWGLSIFLCTIAR 63 (121)
Q Consensus 1 lR~G~raa~~~~vvt~lLL~vL~GP------lral-~~l~~~GllGl~LG~~w~~-------~---~sw~~si~~gal~~ 63 (121)
.|||.|+|..+..+.|++=. +.|| .+.+ =|.++|+.+|+ ...+++ + .+=...+..|++++
T Consensus 40 ~r~G~~~G~~~G~l~Gll~~-~~g~~~~~~p~q~llDY~laf~~lGl--aGlf~~~~~~~~~~~~~~~~~~~i~~g~~i~ 116 (177)
T PF09515_consen 40 FRRGWKAGILAGFLYGLLQF-LLGPAYIVHPVQVLLDYPLAFGALGL--AGLFAKPLQKTLKNNRYKKSYLNIILGTFIA 116 (177)
T ss_dssp HHH-HHHHHHHHHHHHHHHH-HTT-S--SSHHHHHHHHTHHHHHGGG--GGGG-----------SSS--HHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHHHH-HhCCceehhHHHHHHHHHHHHHHHHH--HHhcccccchhhhhcccchhHHHHHHHHHHH
Confidence 39999999999999998544 4665 3433 36788888887 445555 1 22333444555554
Q ss_pred HHHHHHHHH-------HHHHHhhccHHHH
Q 033347 64 SAGAMGYIL-------TSSFLIRENILAL 85 (121)
Q Consensus 64 ~~g~~~~v~-------l~s~L~geNl~~~ 85 (121)
....++.=. -++---|.|||.|
T Consensus 117 ~~~r~~~h~isGvif~~~yAp~g~~~~~Y 145 (177)
T PF09515_consen 117 VFLRYFCHFISGVIFFGSYAPEGMNPWLY 145 (177)
T ss_dssp HHHHHHHHHHHHHHH-GGG--TT--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcccHHHH
Confidence 333322222 2233357899865
No 5
>TIGR02359 thiW thiW protein. Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved,to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=83.34 E-value=18 Score=27.59 Aligned_cols=77 Identities=13% Similarity=0.039 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Q 033347 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRL-GVDWGLSIFLCTIARSAGAMGYILTSSFLIRENI 82 (121)
Q Consensus 4 G~raa~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~-~~sw~~si~~gal~~~~g~~~~v~l~s~L~geNl 82 (121)
|+.+|.....++.++-..+ | .-++.+...+-+.++.-|..+|| +..++..+....-++.+|.....-+.-+++|.+.
T Consensus 46 GP~~g~~~a~i~~ll~~l~-~-~g~~~afpg~~~~a~laGliyrk~~~~~~a~~ge~igt~iig~~~s~pi~~~~~g~~~ 123 (160)
T TIGR02359 46 GPWYALAVAFIIGLLRNTL-G-LGTVLAFPGGMPGALLAGLLYRFGRKHYWASLGEILGTGIIGSLLAYPVAAWLLGSSE 123 (160)
T ss_pred chHHHHHHHHHHHHHHHHh-C-CCchHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 7777777777777777664 3 22233344555678888888887 5677778888888999999999999999999643
No 6
>COG4241 Predicted membrane protein [Function unknown]
Probab=81.28 E-value=1.4 Score=37.30 Aligned_cols=96 Identities=16% Similarity=0.087 Sum_probs=74.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHH-HHHHHHHHHhhc
Q 033347 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAM-GYILTSSFLIRE 80 (121)
Q Consensus 2 R~G~raa~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~-~~v~l~s~L~ge 80 (121)
|||.|-+.+-..++ ..-.++.+|--....-+.++.=|+.+|...||..+...-+.-++.+.++-.. +++-++=.+.+.
T Consensus 48 k~g~k~~v~~~~v~-~~~~~~i~~~~l~~v~l~~~~p~vv~~~~~kr~e~~f~i~~~~s~~amiwi~~~yF~ls~~~~~i 126 (314)
T COG4241 48 KHGLKHGVEVLIVA-VGVVILIDSKALLLVALMFLIPGVVMGILLKRVEKAFAIMSGASTAAMIWIINFYFPLSIVIRII 126 (314)
T ss_pred HhccchhhheeeEe-eeeeEEecchHHHHHHHHHhCchhhhhHHHHhccchhhHHhhHHHHHHHHHHHHHHHhhhhhccc
Confidence 77887766644433 3344456677777777888889999999999988888877777888888888 777788888899
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 033347 81 NILALITINIHASLTFIF 98 (121)
Q Consensus 81 Nl~~~~~~~~~~~Ld~~~ 98 (121)
||..-...+..++++-.-
T Consensus 127 npv~~a~~~~Rqsl~~a~ 144 (314)
T COG4241 127 NPVDDAVVYLRQSLNAAI 144 (314)
T ss_pred CCcHHHHHHHHhhhHHHH
Confidence 999888888888776543
No 7
>PF07155 ECF-ribofla_trS: ECF-type riboflavin transporter, S component; InterPro: IPR009825 This family consists of several bacterial proteins of around 180 residues in length that appear to be multi-pass membrane proteins. The function of this family is unknown.; GO: 0016020 membrane
Probab=80.40 E-value=20 Score=26.16 Aligned_cols=47 Identities=26% Similarity=0.351 Sum_probs=34.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhHHHhhcC
Q 033347 3 WGVAAGRKTMVATAMLLLVLSGP-VKALAYLLTHGVLGFSMGSLWRLG 49 (121)
Q Consensus 3 ~G~raa~~~~vvt~lLL~vL~GP-lral~~l~~~GllGl~LG~~w~~~ 49 (121)
-|++.|-....++..+--.+.|- .-.+.+.+.+|+.|+..|..++|.
T Consensus 49 ~Gp~~G~ivg~ig~~l~dll~g~~~~~~~~~i~~~~~g~i~g~~~~~~ 96 (169)
T PF07155_consen 49 FGPKYGAIVGAIGDLLSDLLSGYGPWAPFTMISKGLMGFIAGLIFRKK 96 (169)
T ss_pred HChHHHHHHHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHHHHHHHh
Confidence 36777766666666666665543 344555899999999999999987
No 8
>PRK03072 heat shock protein HtpX; Provisional
Probab=76.47 E-value=34 Score=27.85 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHHHH
Q 033347 26 VKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRE-------NILALITINIHASLTFIF 98 (121)
Q Consensus 26 lral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~ge-------Nl~~~~~~~~~~~Ld~~~ 98 (121)
++....+..+..+-..+||.+ + ...+..+.+......++..+.+..+... +|- .-.+.++.++.+.
T Consensus 8 ~~t~~l~~~~~~~~~~~g~~~--~---~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~v~~~--~~p~L~~~v~~la 80 (288)
T PRK03072 8 LKTALLLGGMSALIVFIGALF--G---RTGLGIAVLIAVGMNAYVYWNSDKLALRAMHAQPVSEV--QAPAMYRIVRELS 80 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCEECChh--hhHHHHHHHHHHH
Confidence 344445555555566667777 1 2334444455555555666655554331 222 2357889999999
Q ss_pred HHcCCCCCCCH
Q 033347 99 SAAGVNIVPSM 109 (121)
Q Consensus 99 ~~lg~~~~P~~ 109 (121)
.+.|++ .|++
T Consensus 81 ~~~g~p-~p~v 90 (288)
T PRK03072 81 TAARQP-MPRL 90 (288)
T ss_pred HHcCCC-CCCE
Confidence 999998 6764
No 9
>PRK03982 heat shock protein HtpX; Provisional
Probab=74.25 E-value=29 Score=28.00 Aligned_cols=82 Identities=12% Similarity=-0.003 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHcCCCC
Q 033347 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENIL-ALITINIHASLTFIFSAAGVNI 105 (121)
Q Consensus 27 ral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~geNl~-~~~~~~~~~~Ld~~~~~lg~~~ 105 (121)
|+...++.++.+-+..|+.+.....|+..+..+.....+..+..-.+.-...+--|. ...-.+.++.+|++..+.|++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~p~L~~~v~~la~~~g~~- 84 (288)
T PRK03982 6 KTGLLMALLTGLLYAIGYLLGGSIGPIIAILLALIPNLISYYYSDKIVLASYNARIVSEEEAPELYRIVERLAERANIP- 84 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCEECChhhhHHHHHHHHHHHHHcCCC-
Confidence 444444555555555555443333455444444333333222222222222232222 112346889999999999987
Q ss_pred CCCH
Q 033347 106 VPSM 109 (121)
Q Consensus 106 ~P~~ 109 (121)
.|++
T Consensus 85 ~p~v 88 (288)
T PRK03982 85 KPKV 88 (288)
T ss_pred CCeE
Confidence 4543
No 10
>PRK03001 M48 family peptidase; Provisional
Probab=65.64 E-value=38 Score=27.28 Aligned_cols=83 Identities=8% Similarity=-0.029 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHcCCC
Q 033347 26 VKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILA-LITINIHASLTFIFSAAGVN 104 (121)
Q Consensus 26 lral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~geNl~~-~~~~~~~~~Ld~~~~~lg~~ 104 (121)
+|+......++.+.+..|+.+.....|...+..+.....+..+..=.+.--..|.-+.. -.-.+.++.++.+..+.|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~p~L~~~v~~la~~~g~~ 83 (283)
T PRK03001 4 VKTAMLMAAITALFIVIGGMIGGSQGMLIALLFALGMNFFSYWFSDKMVLKMYNAQEVDENTAPQFYRMVRELAQRAGLP 83 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhHHHHHHHcCCEECCccccHHHHHHHHHHHHHcCCC
Confidence 34455555555556666666665555665555544443333333322222222211110 00126889999999999998
Q ss_pred CCCCH
Q 033347 105 IVPSM 109 (121)
Q Consensus 105 ~~P~~ 109 (121)
. |++
T Consensus 84 ~-p~v 87 (283)
T PRK03001 84 M-PKV 87 (283)
T ss_pred C-CeE
Confidence 4 653
No 11
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=57.52 E-value=81 Score=23.81 Aligned_cols=80 Identities=19% Similarity=0.196 Sum_probs=56.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHH--HHHHHHH-HhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033347 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLL--THGVLGF-SMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLI 78 (121)
Q Consensus 2 R~G~raa~~~~vvt~lLL~vL~GPlral~~l~--~~GllGl-~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~ 78 (121)
.+|.|.+..-.+.=.++-+.+.|..-++.+.+ .=|+.+. .|.-.+|....+.-.+..+...+..-.+.|+...++++
T Consensus 39 ~~g~~~a~~v~~lR~~l~~l~~G~~~s~~f~~Sl~Ggl~S~~vM~ll~~~~~~~~S~~giSi~Gai~HN~gQl~va~~i~ 118 (148)
T PF07456_consen 39 LLGFKEALLVALLRILLGSLLFGTLFSPSFLFSLAGGLLSLLVMALLKKLFKKKFSLIGISIAGAIAHNIGQLIVASLII 118 (148)
T ss_pred HcChhHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888888888999999995544444 4445554 44555555445666667777777788999999888887
Q ss_pred hcc
Q 033347 79 REN 81 (121)
Q Consensus 79 geN 81 (121)
+.+
T Consensus 119 ~~~ 121 (148)
T PF07456_consen 119 QSP 121 (148)
T ss_pred cCh
Confidence 643
No 12
>PRK14218 camphor resistance protein CrcB; Provisional
Probab=56.95 E-value=51 Score=24.22 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHH
Q 033347 50 VDWGLSIFLCTIARSAGAMGYILTSSFLIR----ENILALITINIHASLT 95 (121)
Q Consensus 50 ~sw~~si~~gal~~~~g~~~~v~l~s~L~g----eNl~~~~~~~~~~~Ld 95 (121)
.-||+.+..-++.+.+|.+.|..++..+.. ..||.-.+.|+.++.-
T Consensus 4 ~~~~~~~l~V~~GG~~Ga~lRy~l~~~~~~~~~~~fP~gTl~VNv~Gsfl 53 (133)
T PRK14218 4 VVWWQSLLLVMLGGAFGSGLRFVIGSCLLQRFGAGFPWGTLAVNLIGSFV 53 (133)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 347777777778888899999988877642 3688776666666543
No 13
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=50.46 E-value=90 Score=24.50 Aligned_cols=64 Identities=23% Similarity=0.209 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHhHHHh-----hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033347 12 MVATAMLLLVLSGPVKALAYLLTHG---VLGFSMGSLW-----RLGVDWGLSIFLCTIARSAGAMGYILTSSFLI 78 (121)
Q Consensus 12 ~vvt~lLL~vL~GPlral~~l~~~G---llGl~LG~~w-----~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~ 78 (121)
..++..+.-.-..+.++..+.+.|+ .+|...|+.. ....++...+..+..+ |.+.++.+.-++-
T Consensus 216 ~~~~~~l~~~~~~~~~~~~~~~~~sl~~piG~~ig~~~~~~~~~~~~~~~~~~~~a~aa---G~~lyv~~~ell~ 287 (317)
T PF02535_consen 216 FALGSILVKAGFSKRKALLLLLLFSLSTPIGALIGIAISNSGSSSSSDIVSGILLAFAA---GTFLYVAFVELLP 287 (317)
T ss_pred hhhhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 3334444444456667777878887 7899999999 4445555666665544 7777777655543
No 14
>PF12822 DUF3816: Protein of unknown function (DUF3816); InterPro: IPR024529 Energy-coupling factor (ECF) transporters consist of a substrate-specific component and an energy-coupling module []. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module. The energy coupling module is composed of an ATPase typical of the ATP binding cassette (ABC) superfamily and a characteristic transmembrane protein. Unlike the ABC transporters, an energy coupling module can be shared between multiple different substrate-binding components. This entry represents the substrate-specific component from a number of different ECF transporters.; PDB: 3P5N_A.
Probab=50.46 E-value=93 Score=22.38 Aligned_cols=51 Identities=16% Similarity=0.191 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhh---HH---HHHHHHHHHHHHHhHHHhh--cCCchH
Q 033347 3 WGVAAGRKTMVATAMLLLVLSGPV---KA---LAYLLTHGVLGFSMGSLWR--LGVDWG 53 (121)
Q Consensus 3 ~G~raa~~~~vvt~lLL~vL~GPl---ra---l~~l~~~GllGl~LG~~w~--~~~sw~ 53 (121)
-|+++|.....++.++-..+.+|. -. +.+.++-.+.|+.-|.+++ |+.++.
T Consensus 42 ~Gp~~G~~~g~i~~il~~l~~~~~~~~~~~~~~~~~l~~~l~gl~~g~~~~~~~~~~~~ 100 (172)
T PF12822_consen 42 LGPVWGALVGFISDILSFLIFGGGGPFIFPGFPGFTLPAALFGLIAGLLYKKLKKKSKK 100 (172)
T ss_dssp S-HHHHHHHHHHHHHHHHHH-TTT-SSHH---HHHHHHHHHHHHHHHHHHT--SS-SHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 388889888888888888775443 32 7888888999999999984 445553
No 15
>PF13301 DUF4079: Protein of unknown function (DUF4079)
Probab=48.94 E-value=24 Score=27.24 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=28.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHH
Q 033347 22 LSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGL 54 (121)
Q Consensus 22 L~GPlral~~l~~~GllGl~LG~~w~~~~sw~~ 54 (121)
+..|.-...+++|++.....+||-||++-.=..
T Consensus 4 liHP~lm~~~vf~~~~~~~~lG~q~R~rR~~~~ 36 (175)
T PF13301_consen 4 LIHPVLMGLLVFPVGGYAIYLGWQWRQRRLQEN 36 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Confidence 567899999999999999999999998754433
No 16
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=47.64 E-value=1.1e+02 Score=22.61 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHcCCCCC
Q 033347 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAGVNIV 106 (121)
Q Consensus 27 ral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~geNl~~~~~~~~~~~Ld~~~~~lg~~~~ 106 (121)
+-....+.+|+.+...... -+-+ |.-+..+.+++.++.+.+.++.-.=......+.+...+..++-..+.++|....
T Consensus 102 ~~~~~~l~~~l~~~~fa~l--fgg~-~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~~~~~~~~~~ 178 (193)
T PF06738_consen 102 PPWLVILAAGLASAAFALL--FGGS-WIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAALLARLGPPFS 178 (193)
T ss_pred CHHHHHHHHHHHHHHHHHH--HCCC-HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 3345566667666655555 3444 344555556666666666665555555555566666666777777777888877
Q ss_pred CCHHHHHH
Q 033347 107 PSMNVIYV 114 (121)
Q Consensus 107 P~~~~v~~ 114 (121)
|+...+-.
T Consensus 179 ~~~vii~~ 186 (193)
T PF06738_consen 179 PSAVIIGA 186 (193)
T ss_pred HHHHHHHH
Confidence 77654433
No 17
>COG1266 Predicted metal-dependent membrane protease [General function prediction only]
Probab=46.96 E-value=83 Score=22.87 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHH
Q 033347 9 RKTMVATAMLLLVLSGPVKA-LAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIAR 63 (121)
Q Consensus 9 ~~~~vvt~lLL~vL~GPlra-l~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~ 63 (121)
+-+.++++++-+..-.|-.. ..+...+-..|+..|+.++|..|-+.++..=...-
T Consensus 156 ~~a~iissllFal~H~~~~~~~~~~~~~~~~gli~~~~~~~t~~l~~~i~~H~~~N 211 (226)
T COG1266 156 LLAIIISSLLFALLHLPNGLLLLYFLLYFIAGLILGLLYLRTGSLWVPILLHALIN 211 (226)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 45666777766666656555 67777788999999999999889888877666554
No 18
>PRK09272 hypothetical protein; Provisional
Probab=46.26 E-value=1.1e+02 Score=22.03 Aligned_cols=44 Identities=11% Similarity=-0.070 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 033347 29 LAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYIL 72 (121)
Q Consensus 29 l~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~ 72 (121)
.-++.|-.++-+..-++.||+.+.|.|+..|..+-...+....+
T Consensus 63 fw~v~pTl~~fl~~~~ll~~~~~f~~sl~~~~~~~~~~~~~~~~ 106 (109)
T PRK09272 63 FWGVPPTLPMFLIVPLLLKRGFGFWLSLLAGIGVTAVLFLLQAL 106 (109)
T ss_pred HHHhhhHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 34555566777888899999999999999998887776665544
No 19
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=45.97 E-value=1.1e+02 Score=21.95 Aligned_cols=45 Identities=7% Similarity=0.044 Sum_probs=33.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHH
Q 033347 50 VDWGLSIFLCTIARSAGAMGYILTSSFLIRE-NILALITINIHASLT 95 (121)
Q Consensus 50 ~sw~~si~~gal~~~~g~~~~v~l~s~L~ge-Nl~~~~~~~~~~~Ld 95 (121)
.|+++.+..|..+...+.+.....-.+..+. ||- +..+..+...|
T Consensus 61 isf~~a~~~g~~~~~ia~li~~v~~~i~~~~IdP~-~~~~~~~~~~~ 106 (163)
T PF13858_consen 61 ISFGQAFKVGFLISLIAGLISAVFQYIYFNYIDPD-FFENYIEAQIE 106 (163)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-HHHHHHHHHHH
Confidence 5999999999999999999888888887777 774 33344444444
No 20
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=35.99 E-value=1.6e+02 Score=23.92 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=24.7
Q ss_pred HHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033347 37 VLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRE 80 (121)
Q Consensus 37 llGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~ge 80 (121)
.+++.+|..+. +||..+..|.+. |.++...++|--...
T Consensus 40 ~v~v~ig~l~~---~~~~~~i~gi~~---g~l~am~vl~rra~r 77 (224)
T PF13829_consen 40 AVFVLIGLLFG---SWWYWLIIGILL---GLLAAMIVLSRRAQR 77 (224)
T ss_pred HHHHHHHHHHc---cHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 44666676666 888888888887 555555555544433
No 21
>COG3859 Predicted membrane protein [Function unknown]
Probab=33.90 E-value=2.4e+02 Score=22.35 Aligned_cols=45 Identities=31% Similarity=0.532 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh------hhHHHH-HHHHHHHHHHHhHHHhhcC
Q 033347 2 RWGVAAGRKTMVATAMLLLVLSG------PVKALA-YLLTHGVLGFSMGSLWRLG 49 (121)
Q Consensus 2 R~G~raa~~~~vvt~lLL~vL~G------Plral~-~l~~~GllGl~LG~~w~~~ 49 (121)
|||.|+|..|-+..|++= ...| |.+.+. |.++|-.+|+ ..+++++
T Consensus 50 RrG~kaG~~tGLl~Gll~-~i~G~~Y~lhpsQ~~ldYilaf~~iG~--aG~F~~~ 101 (185)
T COG3859 50 RRGLKAGLLTGLLWGLLH-LILGKAYILHPSQVLLDYILAFMAIGF--AGLFASS 101 (185)
T ss_pred HhhhHHHHHHHHHHHHHH-HHhCchhhccHHHHHHHhhHHHHHHHH--HHHHHHH
Confidence 899998888887777643 3344 666654 5666666665 4566644
No 22
>PRK13661 hypothetical protein; Provisional
Probab=31.21 E-value=2.5e+02 Score=21.73 Aligned_cols=85 Identities=11% Similarity=0.083 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhcC------CchHHHHHHHHHHHHHHHHH----HHHH
Q 033347 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLG------VDWGLSIFLCTIARSAGAMG----YILT 73 (121)
Q Consensus 4 G~raa~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~~------~sw~~si~~gal~~~~g~~~----~v~l 73 (121)
|++.|......+..+--.+.|=-.=..+.+..|+.|+..|...+|. .++..-+......-..+++. .=..
T Consensus 52 Gp~~G~lvg~ig~~L~dll~G~~~w~~~ti~~gl~G~i~Gl~~~~~~~~~g~~~~k~~~~f~i~~~i~n~i~~g~i~~~~ 131 (182)
T PRK13661 52 GPVVGFLVGFIGHALKDFIAYGGPWWTWVLASGIIGLIIGLFKKRLRLENGVFSKKDIVYFNIVQIIANVIAWGLIAPIG 131 (182)
T ss_pred ChHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555554444441112234678999999999877642 33433333332222223322 2224
Q ss_pred HHHHhhccHHHHHHH
Q 033347 74 SSFLIRENILALITI 88 (121)
Q Consensus 74 ~s~L~geNl~~~~~~ 88 (121)
..++++|..-+...+
T Consensus 132 di~~y~~p~~~v~~q 146 (182)
T PRK13661 132 DIIIYSEPANKVFAQ 146 (182)
T ss_pred HHHHhCchHHHHHHh
Confidence 455666655544433
No 23
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=30.93 E-value=62 Score=21.76 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=15.4
Q ss_pred HhhhhHHHHHHHHHHHHHHHhHHHhhcC
Q 033347 22 LSGPVKALAYLLTHGVLGFSMGSLWRLG 49 (121)
Q Consensus 22 L~GPlral~~l~~~GllGl~LG~~w~~~ 49 (121)
==-|.+|+-.-+. +|+.+|++++|+
T Consensus 70 ~e~P~~svgiAag---vG~llG~Ll~RR 94 (94)
T PF05957_consen 70 RENPWQSVGIAAG---VGFLLGLLLRRR 94 (94)
T ss_pred HHChHHHHHHHHH---HHHHHHHHHhCC
Confidence 3457777443332 677777777764
No 24
>PRK04897 heat shock protein HtpX; Provisional
Probab=30.06 E-value=3.1e+02 Score=22.39 Aligned_cols=70 Identities=13% Similarity=0.112 Sum_probs=36.3
Q ss_pred HHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHh----hccHH-HHHHHHHHHHHHHHHHHcCCCCCCCH
Q 033347 37 VLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLI----RENIL-ALITINIHASLTFIFSAAGVNIVPSM 109 (121)
Q Consensus 37 llGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~----geNl~-~~~~~~~~~~Ld~~~~~lg~~~~P~~ 109 (121)
.+|..+|+.|.. +-...+..+.+++....+...+.+..+. +-.+. .-.-.+.++.+|.+..+.|++ .|.+
T Consensus 26 ~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~p~L~~~v~~la~~~gip-~p~v 100 (298)
T PRK04897 26 LVGAAVGYLFLN--SGLGGLIIALIIGVIYALIMIFQSTNVVMSMNHAREVTEEEAPELWHIVEDMAMVAQIP-MPRV 100 (298)
T ss_pred HHHHHHhhcccc--cchhHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCEECChhhhHHHHHHHHHHHHHcCCC-CCcE
Confidence 345555544432 1122333444444445555555443332 21111 112346889999999999998 5654
No 25
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=29.84 E-value=2.3e+02 Score=20.84 Aligned_cols=48 Identities=19% Similarity=0.227 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHhHHHhhcCCchHHHHH
Q 033347 4 GVAAGRKTMVATAMLLLVLSGPVKALAYLLTHG-VLGFSMGSLWRLGVDWGLSIF 57 (121)
Q Consensus 4 G~raa~~~~vvt~lLL~vL~GPlral~~l~~~G-llGl~LG~~w~~~~sw~~si~ 57 (121)
++|++..+..+.++.-..+..|+-. ..| ++|..++.. .++.++..++-
T Consensus 60 ~s~~~~~ga~iG~IvG~f~~~p~G~-----iiG~~~Ga~l~El-~~~~~~~~A~~ 108 (140)
T PF04306_consen 60 ASRWGIWGAIIGGIVGFFVLPPLGL-----IIGPFLGAFLGEL-LRGKDFRRALR 108 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHH-HhCCCHHHHHH
Confidence 5788888888888888888888732 334 778888888 55556666654
No 26
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=29.71 E-value=56 Score=23.64 Aligned_cols=22 Identities=9% Similarity=-0.081 Sum_probs=16.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHH
Q 033347 49 GVDWGLSIFLCTIARSAGAMGYILT 73 (121)
Q Consensus 49 ~~sw~~si~~gal~~~~g~~~~v~l 73 (121)
+-+||.++++++.+ |++.-+++
T Consensus 80 ~e~PWq~VGvaAaV---GlllGlLl 101 (104)
T COG4575 80 RENPWQGVGVAAAV---GLLLGLLL 101 (104)
T ss_pred HcCCchHHHHHHHH---HHHHHHHH
Confidence 46899999998887 55554444
No 27
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=29.60 E-value=3.1e+02 Score=22.31 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=29.2
Q ss_pred HHHHHHHHhhh-hHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHH
Q 033347 15 TAMLLLVLSGP-VKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLC 59 (121)
Q Consensus 15 t~lLL~vL~GP-lral~~l~~~GllGl~LG~~w~~~~sw~~si~~g 59 (121)
.|+.+....|| .+.+..++..|+.|+..|+....+--+....+.|
T Consensus 93 ~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gLG 138 (284)
T TIGR00751 93 SGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGLG 138 (284)
T ss_pred HHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCchH
Confidence 44555566676 3445567789999999999998654444444433
No 28
>smart00730 PSN Presenilin, signal peptide peptidase, family. Presenilin 1 and presenilin 2 are polytopic membrane proteins, whose genes are mutated in some individuals with Alzheimer's disease. Distant homologues, present in eukaryotes and archaea, also contain conserved aspartic acid residues which are predicted to contribute to catalysis. At least one member of this family has been shown to possess signal peptide peptidase activity.
Probab=29.49 E-value=89 Score=25.15 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhh
Q 033347 10 KTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWR 47 (121)
Q Consensus 10 ~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~ 47 (121)
-|++.|-.++...-.|..|+.|+.|.++.+......+|
T Consensus 212 ~GL~~t~~~l~~~~~aqPALlylvp~~l~~~~~~~~~r 249 (249)
T smart00730 212 IGLILTLVLLALFKKAQPALPYLVPFTLVFYLLTALLR 249 (249)
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHHHhC
Confidence 45566667777777899999999999999998877654
No 29
>PRK05457 heat shock protein HtpX; Provisional
Probab=26.21 E-value=3.6e+02 Score=21.94 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cHHHHHHHHHHHHHHHHHHHcCCCCCCCH
Q 033347 52 WGLSIFLCTIARSAGAMGYILTSSFLIRE--------NILALITINIHASLTFIFSAAGVNIVPSM 109 (121)
Q Consensus 52 w~~si~~gal~~~~g~~~~v~l~s~L~ge--------Nl~~~~~~~~~~~Ld~~~~~lg~~~~P~~ 109 (121)
.+-.+..+.+.+..+.+++.+.+..+... +|-.--....++.+|++..+.|++ .|++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~a~~i~~~~~~~~~~L~~~v~~la~~~g~p-~p~v 97 (284)
T PRK05457 33 LGGLLVFAAVFGFGGSFISLLMSKWMAKRSTGAEVIEQPRNETERWLVETVARQARQAGIG-MPEV 97 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeECCCCCCchHHHHHHHHHHHHHhCCCC-CCCE
Confidence 44455566677777777777777776652 121111224789999999999998 7764
No 30
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=25.29 E-value=4.1e+02 Score=22.25 Aligned_cols=72 Identities=18% Similarity=0.098 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHH-----HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
Q 033347 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAG-----AMGYILTSSFLIRENILALITINIHASLTFIF 98 (121)
Q Consensus 27 ral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g-----~~~~v~l~s~L~geNl~~~~~~~~~~~Ld~~~ 98 (121)
+-+..+.|+|+.++.-...-+.+.+-.....-=.+....+ ++.+-.+..+..|.||.+++....+..+.-+.
T Consensus 178 ~~i~~~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~~~~l~Af~ 254 (390)
T PF00375_consen 178 NWIMKLAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAMLPALLTAFS 254 (390)
T ss_dssp HHHTTTHHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHHHHHHHHhh
Confidence 4455678999999999999988866555444222222222 23333355668999999998777777665554
No 31
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=24.52 E-value=3.3e+02 Score=20.92 Aligned_cols=93 Identities=17% Similarity=0.071 Sum_probs=64.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 033347 2 RWGVAAGRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIREN 81 (121)
Q Consensus 2 R~G~raa~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~geN 81 (121)
|+|.-+..-+.++.........+-.-...+.++==.+|..+-.-++...++..+.....+.....+......+..=.-|+
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 117 (290)
T PF09991_consen 38 KYGLIALLAAAVLLALFGGPVSALFYLLFFGLPGLVLGYLLRKKRSWSRSILAGTLASLLGVLVFFLLLAYLSGINIFEQ 117 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Confidence 56667777777777777777888777777777777999999999999999888887777766666666555554443344
Q ss_pred HHHHHHHHHHHHH
Q 033347 82 ILALITINIHASL 94 (121)
Q Consensus 82 l~~~~~~~~~~~L 94 (121)
..+.+.+..++..
T Consensus 118 ~~~~~~~~~~~~~ 130 (290)
T PF09991_consen 118 LIEQIQESIEQVL 130 (290)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 32
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=22.40 E-value=2.1e+02 Score=20.66 Aligned_cols=28 Identities=18% Similarity=0.066 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 033347 53 GLSIFLCTIARSAGAMGYILTSSFLIRE 80 (121)
Q Consensus 53 ~~si~~gal~~~~g~~~~v~l~s~L~ge 80 (121)
||++..+...-.+|.++.+.-..+..+.
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~ 68 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGH 68 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988777655555543
No 33
>PF04892 VanZ: VanZ like family ; InterPro: IPR006976 This entry represents a conserved sequence region found in the VanZ protein and also several phosphotransbutyrylases. VanZ confers low-level resistance to the glycopeptide antibiotic teicoplanin (Te). Analysis of cytoplasmic peptidoglycan precursors, accumulated in the presence of ramoplanin, showed that VanZ-mediated Te resistance does not involve incorporation of a substituent of D-alanine into the peptidoglycan precursors [].
Probab=22.23 E-value=2.7e+02 Score=19.05 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Q 033347 27 KALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYIL 72 (121)
Q Consensus 27 ral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~ 72 (121)
+-..-.+.|-.+|..+...+++..+++..+..|.+.+..-=+.+.+
T Consensus 53 ~~~~hi~~f~plG~l~~~~~~~~~~~~~~~~~~~~~sl~iE~~Q~~ 98 (133)
T PF04892_consen 53 DKIGHILLFFPLGFLLPLLFRRLRSWLLAILIGFLFSLFIELIQLF 98 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhcc
Confidence 4445566777888999999998778898888888776544444443
No 34
>KOG1629 consensus Bax-mediated apoptosis inhibitor TEGT/BI-1 [Defense mechanisms]
Probab=21.31 E-value=3.9e+02 Score=21.83 Aligned_cols=80 Identities=23% Similarity=0.312 Sum_probs=57.5
Q ss_pred CcchhHHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHH-HHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 033347 1 MRWGVAAGRKTMVATAMLLLVLSGPVK----ALAYLLTHG-VLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSS 75 (121)
Q Consensus 1 lR~G~raa~~~~vvt~lLL~vL~GPlr----al~~l~~~G-llGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s 75 (121)
|||. -.|..+.+-+..++--++-|.. -+-.++.|| +=|..+|=+-+.-.+--.|+...+..+++-.|..+.++.
T Consensus 49 M~~n-igG~lsalg~l~~miwl~~~py~hk~rl~lL~~fa~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSasA 127 (235)
T KOG1629|consen 49 MVWN-IGGLLSALGSLGLMIWLMFTPYEHKTRLGLLFLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASA 127 (235)
T ss_pred hhhh-ccchHHHHHHHHHHHHHhCCCCccchhHHHHHHHHHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHHHH
Confidence 3555 5567777777777777777662 344555566 446677777777777778999999999999999999888
Q ss_pred HHhhcc
Q 033347 76 FLIREN 81 (121)
Q Consensus 76 ~L~geN 81 (121)
.+-+.-
T Consensus 128 mlArrr 133 (235)
T KOG1629|consen 128 MLARRR 133 (235)
T ss_pred HHHhhh
Confidence 776544
No 35
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=20.86 E-value=5.2e+02 Score=22.08 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=46.0
Q ss_pred HHHHHH----HHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q 033347 31 YLLTHG----VLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALI 86 (121)
Q Consensus 31 ~l~~~G----llGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~geNl~~~~ 86 (121)
|++|.. ++..-+...+|.+..--.++..|++.-.+|.+..+++..-..++|-|+..
T Consensus 59 ~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~a 118 (378)
T PF05684_consen 59 YLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIA 118 (378)
T ss_pred HHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence 455555 56667788899998888999999999999999998888887889988655
No 36
>TIGR03008 pepcterm_CAAX CAAX prenyl protease-related protein. The CAAX prenyl protease, in eukaryotes, catalyzes three covalent modifications, including cleavage and acylation, at the C-terminus of certain proteins in a process connected to protein sorting. This family describes a bacterial protein family homologous to one domain of the CAAX-processing enzyme. Members of this protein family are found in genomes that carry a predicted protein sorting system, PEP-CTERM/exosortase, usually in the vicinity of the EpsH homolog that is the hallmark of the system. The function of this protein is unknown, but it may relate to protein motification.
Probab=20.38 E-value=3.5e+02 Score=21.52 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHhhcCCchHHHHHHHHHH
Q 033347 8 GRKTMVATAMLLLVLSGPVKALAYLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIA 62 (121)
Q Consensus 8 a~~~~vvt~lLL~vL~GPlral~~l~~~GllGl~LG~~w~~~~sw~~si~~gal~ 62 (121)
.+.+.++++++- |..+. .....++.|+..|+.++|..|-+.++..=++.
T Consensus 157 ~~~a~lisSllF----al~H~--~~~~~~l~Gli~~~l~~~tgsL~~~I~~H~~~ 205 (222)
T TIGR03008 157 HWPSFLAVTLLF----GLEHH--LIVAGLIAGLAYNLLLLRTGSIMACILAHAVT 205 (222)
T ss_pred cHHHHHHHHHHH----HHHHH--HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 455666666643 33333 23345677999999999988887777654443
No 37
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=20.28 E-value=2.1e+02 Score=17.13 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhHHHhhcCC--chHHHHHHHHHHHHHHHHH
Q 033347 32 LLTHGVLGFSMGSLWRLGV--DWGLSIFLCTIARSAGAMG 69 (121)
Q Consensus 32 l~~~GllGl~LG~~w~~~~--sw~~si~~gal~~~~g~~~ 69 (121)
++..|..-+..+.- +|+. +|+..+..|.+.-.+|.+.
T Consensus 32 ~i~~Gi~~l~~~~~-~~~~~~~~~~~l~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 32 LIISGIFQLISAFR-RRKGSKGWWWSLLSGILSIVLGIIL 70 (72)
T ss_pred HHHHHHHHHHHHHh-ccccchhhHHHHHHHHHHHHHHHHH
Confidence 44556666665555 4433 7888888888877777654
Done!