Query 033347
Match_columns 121
No_of_seqs 76 out of 78
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:23:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rlb_A THIT; S-component, ECF 96.3 0.017 5.9E-07 44.0 8.0 84 2-86 60-157 (192)
2 3p5n_A RIBU, riboflavin uptake 93.1 0.75 2.6E-05 34.0 9.2 55 2-56 57-113 (189)
3 3eb7_A Insecticidal delta-endo 22.9 57 0.0019 27.8 3.1 18 79-96 44-61 (589)
4 2nwl_A GLTPH, glutamate sympor 22.8 2.9E+02 0.01 22.6 7.4 69 28-97 200-273 (422)
5 2kdc_A Diacylglycerol kinase; 17.0 2.7E+02 0.0091 19.2 5.4 64 31-96 12-81 (121)
6 2zy9_A Mg2+ transporter MGTE; 13.7 5.2E+02 0.018 21.0 7.1 21 58-78 450-470 (473)
7 4g1u_A Hemin transport system 8.7 7.6E+02 0.026 19.7 9.6 53 42-102 158-210 (357)
8 4err_A Autotransporter adhesin 7.6 2.8E+02 0.0096 18.5 2.5 31 73-104 54-84 (90)
9 2qkg_A Insecticidal delta-endo 6.1 8.1E+02 0.028 21.0 5.3 17 81-97 46-62 (589)
10 1wrg_A LH-1, light-harvesting 5.7 3.3E+02 0.011 16.5 1.9 22 27-48 25-46 (55)
No 1
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=96.31 E-value=0.017 Score=43.97 Aligned_cols=84 Identities=18% Similarity=0.172 Sum_probs=55.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh-----hhHH-HHHHHHHHHHHHHhHHHhhcCCch-HHHHHHHHHHHHHHHHHHHHHH
Q 033347 2 RWGVAAGRKTMVATAMLLLVLSG-----PVKA-LAYLLTHGVLGFSMGSLWRLGVDW-GLSIFLCTIARSAGAMGYILTS 74 (121)
Q Consensus 2 R~G~raa~~~~vvt~lLL~vL~G-----Plra-l~~l~~~GllGl~LG~~w~~~~sw-~~si~~gal~~~~g~~~~v~l~ 74 (121)
|+|+|+|.....+.+++=.+.-+ |++. +-|.++|+.+|+. |..++|+.+= .+....|+++++++..+.-.++
T Consensus 60 ~~Gp~~G~~~g~i~gll~~i~g~~~~~~p~q~lldy~laf~~~Gla-G~f~~~~~~~~~~~~~lg~~ig~~~r~~~~~is 138 (192)
T 3rlb_A 60 RRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIA-GLFRQKTAPLKLAPVLLGTFVAVLLKYFFHFIA 138 (192)
T ss_dssp HHCHHHHHHHHHHHHHHHHHTTCSCCSSHHHHHHHHTHHHHHGGGG-GGGCCCSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHChHHHHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHHHHHH-HhheeccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999998887544433 4554 4568899999998 8888875542 2445556666555544433344
Q ss_pred HH-Hh------hccHHHHH
Q 033347 75 SF-LI------RENILALI 86 (121)
Q Consensus 75 s~-L~------geNl~~~~ 86 (121)
.. +. |-|||.|-
T Consensus 139 gvvff~~yaP~g~~~~~yS 157 (192)
T 3rlb_A 139 GIIFWSQYAWKGWGAVAYS 157 (192)
T ss_dssp HHHHCGGGCCTTCCHHHHH
T ss_pred HHHHHHhhCcccCcHHHHH
Confidence 32 22 56898764
No 2
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=93.15 E-value=0.75 Score=34.00 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=44.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhHHHhhcCCchHHHH
Q 033347 2 RWGVAAGRKTMVATAMLLLVLSG--PVKALAYLLTHGVLGFSMGSLWRLGVDWGLSI 56 (121)
Q Consensus 2 R~G~raa~~~~vvt~lLL~vL~G--Plral~~l~~~GllGl~LG~~w~~~~sw~~si 56 (121)
..|+++|.....+..++-..+.| |.-.+.-.+..+..|+.-|+.+||+.+++..+
T Consensus 57 ~~Gp~~g~~~~~l~~ll~~l~~g~~~~g~~~~~l~~~~~g~~~~~~y~k~~~~~~~~ 113 (189)
T 3p5n_A 57 TFGPVAGIIVALVKNLLNYLFSMGDPVGPFANFLAGASFLLTAYAIYKNKRSTKSLI 113 (189)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHSSSCSHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 46899999999999888877754 66666667778899988899999998876543
No 3
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=22.86 E-value=57 Score=27.77 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=11.6
Q ss_pred hccHHHHHHHHHHHHHHH
Q 033347 79 RENILALITINIHASLTF 96 (121)
Q Consensus 79 geNl~~~~~~~~~~~Ld~ 96 (121)
++++|+.++.++++++|+
T Consensus 44 ~~~~w~~~~~~ve~lIdq 61 (589)
T 3eb7_A 44 GKSQWEIFMEQVEALINQ 61 (589)
T ss_dssp SSCHHHHHHHHHHHHHTC
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 556676666666666654
No 4
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=22.80 E-value=2.9e+02 Score=22.56 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhHHHhhcCCchHHHHH---HHHHHHHH--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q 033347 28 ALAYLLTHGVLGFSMGSLWRLGVDWGLSIF---LCTIARSA--GAMGYILTSSFLIRENILALITINIHASLTFI 97 (121)
Q Consensus 28 al~~l~~~GllGl~LG~~w~~~~sw~~si~---~gal~~~~--g~~~~v~l~s~L~geNl~~~~~~~~~~~Ld~~ 97 (121)
-+..+.|+|+.|+.-...=+.+.+=..+.. .......+ .++.+-.+.. ..|.||+.++-...++.+.-+
T Consensus 200 ~im~laPigvf~lia~~~~~~g~~~l~~l~~~i~~~~~~~~i~~~vv~~~~~~-~~~~np~~~~k~~~~a~~~Af 273 (422)
T 2nwl_A 200 GVMQYAPIGVFALIAYVMAEQGVHVVGELAKVTAAVYVGLTLQILLVYFVLLK-IYGIDPISFIKHAKDAMLTAF 273 (422)
T ss_dssp HHTTSHHHHHHHHHHHHHTTTGGGCCTHHHHHHHHHHHHHHHHHHHTHHHHHH-HTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHH
Confidence 345577999888877766655543222222 11222111 2223333444 789999988777776666554
No 5
>2kdc_A Diacylglycerol kinase; membrane protein, solution kinase, DAGK, cell inner membrane, cell membrane, membrane, phospholipid biosynthesis; NMR {Escherichia coli}
Probab=16.96 E-value=2.7e+02 Score=19.17 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHhHHHhhcCCchHHHHHHHHHHHHHHHHHHH------HHHHHHhhccHHHHHHHHHHHHHHH
Q 033347 31 YLLTHGVLGFSMGSLWRLGVDWGLSIFLCTIARSAGAMGYI------LTSSFLIRENILALITINIHASLTF 96 (121)
Q Consensus 31 ~l~~~GllGl~LG~~w~~~~sw~~si~~gal~~~~g~~~~v------~l~s~L~geNl~~~~~~~~~~~Ld~ 96 (121)
-=+.|..=|+ -++||++.|-..=+..+.++-.+++++.+ ++..-..-.=..+++++++++..|.
T Consensus 12 ~s~~yA~~Gl--~~a~~~E~~fr~~~~~~~~~i~~~~~l~~s~~e~~~li~~i~lVl~~EllNTAIE~vvD~ 81 (121)
T 2kdc_A 12 KAAGYSWKGL--RAAWINEAAFRQEGVAVLLAVVIACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDR 81 (121)
T ss_dssp HHHHTHHHHH--HHHTTTTTHHHHHHHHHHHHHHHHHHCCCCCSHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred HHHHHHHHHH--HHHHhCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355556665 57889999988888888888888877522 1111111222335566666666663
No 6
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=13.72 E-value=5.2e+02 Score=20.98 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033347 58 LCTIARSAGAMGYILTSSFLI 78 (121)
Q Consensus 58 ~gal~~~~g~~~~v~l~s~L~ 78 (121)
+.++....|++.++.+.++++
T Consensus 450 itt~~D~~g~~~~~~~a~~~l 470 (473)
T 2zy9_A 450 VATLSDVTGLLIYLSVARLLL 470 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444544444444443
No 7
>4g1u_A Hemin transport system permease protein HMUU; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=8.69 E-value=7.6e+02 Score=19.73 Aligned_cols=53 Identities=4% Similarity=-0.120 Sum_probs=31.0
Q ss_pred hHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHcC
Q 033347 42 MGSLWRLGVDWGLSIFLCTIARSAGAMGYILTSSFLIRENILALITINIHASLTFIFSAAG 102 (121)
Q Consensus 42 LG~~w~~~~sw~~si~~gal~~~~g~~~~v~l~s~L~geNl~~~~~~~~~~~Ld~~~~~lg 102 (121)
..-.++++.++.+-+..|..+ +.++.-..+.+..-.|+ ++.++...|.+..+.
T Consensus 158 ~~l~~~~~~~~~~liL~Giav---s~~~~a~~~~l~~~~~~-----~~~~~l~~Wl~GSl~ 210 (357)
T 4g1u_A 158 FTLSRWGHGNLARLLLAGIAI---NALCGAAVGVLTYISDD-----QQLRQFSLWSMGSLG 210 (357)
T ss_dssp HHHHHHSCCCHHHHHHHHHHH---HHHHHHHHHHHHHHCCS-----HHHHHHHHHTTTCCT
T ss_pred HHHHhccCCChHHHHHHHHHH---HHHHHHHHHHHHHHcCH-----HHHHHHHHHHhhhhc
Confidence 334466777888878888777 44444444333322232 345667777776654
No 8
>4err_A Autotransporter adhesin; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.55A {Vibrio vulnificus}
Probab=7.56 E-value=2.8e+02 Score=18.55 Aligned_cols=31 Identities=10% Similarity=0.080 Sum_probs=21.2
Q ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHcCCC
Q 033347 73 TSSFLIRENILALITINIHASLTFIFSAAGVN 104 (121)
Q Consensus 73 l~s~L~geNl~~~~~~~~~~~Ld~~~~~lg~~ 104 (121)
+..++.+ .|+.-=+.++++++||+-.++|+.
T Consensus 54 ie~Yl~~-hPdS~Rv~al~qlldQv~sr~~~~ 84 (90)
T 4err_A 54 INDYIAE-HPTSGRNQALTQLKEQVTSALGLE 84 (90)
T ss_dssp HHHHHHH-CCSCHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHhc-CCchhhHHHHHHHHHHHHHHhhhh
Confidence 3334433 455555688899999999999974
No 9
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=6.07 E-value=8.1e+02 Score=20.99 Aligned_cols=17 Identities=6% Similarity=0.040 Sum_probs=15.1
Q ss_pred cHHHHHHHHHHHHHHHH
Q 033347 81 NILALITINIHASLTFI 97 (121)
Q Consensus 81 Nl~~~~~~~~~~~Ld~~ 97 (121)
|+|+.+..++++++||=
T Consensus 46 ~~We~~~~~VE~LIdqk 62 (589)
T 2qkg_A 46 SQWEIFMEQVEALINQK 62 (589)
T ss_dssp CHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 89999999999998863
No 10
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=5.68 E-value=3.3e+02 Score=16.54 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhHHHhhc
Q 033347 27 KALAYLLTHGVLGFSMGSLWRL 48 (121)
Q Consensus 27 ral~~l~~~GllGl~LG~~w~~ 48 (121)
.+...++...+++..+.|.||-
T Consensus 25 ~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 25 SSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666677888889998873
Done!