Query 033348
Match_columns 121
No_of_seqs 57 out of 59
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 12:48:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09775 Keratin_assoc: Kerati 100.0 6.2E-59 1.3E-63 348.7 12.2 113 1-113 1-118 (131)
2 KOG4615 Uncharacterized conser 100.0 6.9E-41 1.5E-45 245.0 9.3 121 1-121 1-122 (122)
3 PF10011 DUF2254: Predicted me 86.4 8 0.00017 32.8 9.4 45 6-50 62-110 (371)
4 PRK10447 HflBKC-binding inner 84.6 14 0.0003 29.8 9.6 82 6-108 104-185 (219)
5 COG2389 Uncharacterized metal- 51.8 36 0.00079 27.4 4.9 50 40-89 92-154 (179)
6 PRK04989 psbM photosystem II r 49.3 19 0.00042 22.1 2.3 17 38-54 5-21 (35)
7 cd06181 BI-1-like BAX inhibito 47.8 1.2E+02 0.0027 23.0 10.0 83 8-111 97-179 (212)
8 TIGR03038 PS_II_psbM photosyst 47.6 23 0.0005 21.4 2.5 17 38-54 5-21 (33)
9 PF13572 DUF4134: Domain of un 47.5 1E+02 0.0023 22.1 6.5 45 9-53 47-92 (98)
10 CHL00080 psbM photosystem II p 42.1 29 0.00063 21.2 2.3 15 40-54 7-21 (34)
11 COG3086 RseC Positive regulato 40.5 1.2E+02 0.0025 23.9 6.0 37 16-52 86-122 (150)
12 PF04971 Lysis_S: Lysis protei 39.6 34 0.00073 23.7 2.6 36 19-58 19-54 (68)
13 COG0577 SalY ABC-type antimicr 38.8 1.1E+02 0.0024 23.2 5.7 36 23-58 331-366 (419)
14 PRK10535 macrolide transporter 37.4 1E+02 0.0022 27.8 6.1 34 24-57 568-601 (648)
15 cd03381 PAP2_glucose_6_phospha 35.4 2.4E+02 0.0053 22.9 10.9 66 51-120 120-198 (235)
16 PF02932 Neur_chan_memb: Neuro 34.9 1.4E+02 0.0031 20.1 5.3 44 6-51 27-71 (237)
17 PRK10332 hypothetical protein; 33.8 38 0.00082 25.0 2.3 16 64-79 8-25 (107)
18 PF04286 DUF445: Protein of un 33.0 43 0.00093 26.6 2.7 18 34-51 348-365 (367)
19 PF05151 PsbM: Photosystem II 33.0 53 0.0012 19.6 2.4 16 39-54 6-21 (31)
20 COG4325 Predicted membrane pro 31.5 4.1E+02 0.0089 24.3 10.1 46 23-70 115-161 (464)
21 PRK14094 psbM photosystem II r 31.0 51 0.0011 21.6 2.3 15 40-54 7-21 (50)
22 PF01027 Bax1-I: Inhibitor of 30.8 2.2E+02 0.0048 21.0 10.7 21 89-109 155-175 (205)
23 PF06738 DUF1212: Protein of u 28.8 1.8E+02 0.0038 21.7 5.3 37 9-45 129-165 (193)
24 PF14362 DUF4407: Domain of un 27.6 3.3E+02 0.0071 22.0 8.2 16 67-82 84-99 (301)
25 PF02687 FtsX: FtsX-like perme 25.4 1.9E+02 0.0042 18.6 7.5 72 25-107 44-120 (121)
26 COG0670 Integral membrane prot 25.2 3.7E+02 0.0081 21.8 10.3 24 86-109 174-197 (233)
27 PF10225 DUF2215: Uncharacteri 24.8 3.8E+02 0.0083 21.8 7.9 91 4-98 40-161 (249)
28 PRK00708 sec-independent trans 24.1 62 0.0013 26.4 2.2 20 63-82 2-21 (209)
29 TIGR03053 PS_I_psaM photosyste 23.9 89 0.0019 18.2 2.2 19 68-86 4-22 (29)
30 PRK14857 tatA twin arginine tr 23.3 83 0.0018 22.5 2.5 20 63-82 4-23 (90)
31 COG4420 Predicted membrane pro 22.8 2.1E+02 0.0046 23.3 5.0 39 41-81 60-101 (191)
32 KOG2639 Sodium sulfate symport 21.9 5.2E+02 0.011 24.8 7.9 73 17-92 509-594 (685)
33 TIGR01410 tatB twin arginine-t 21.6 81 0.0018 21.7 2.1 19 63-81 1-19 (80)
34 PF04632 FUSC: Fusaric acid re 21.5 5.6E+02 0.012 22.5 8.2 66 34-109 394-461 (650)
35 PRK04098 sec-independent trans 21.2 80 0.0017 24.8 2.2 20 63-82 2-21 (158)
36 PF11028 DUF2723: Protein of u 21.0 4.1E+02 0.0088 20.7 6.2 30 31-60 76-105 (178)
37 PF06679 DUF1180: Protein of u 20.9 88 0.0019 24.5 2.4 37 83-121 93-129 (163)
38 PF11174 DUF2970: Protein of u 20.8 1.9E+02 0.0042 18.8 3.7 27 30-56 27-53 (56)
39 TIGR03434 ADOP Acidobacterial 20.6 6.2E+02 0.014 22.7 8.1 73 24-107 317-394 (803)
40 PF10779 XhlA: Haemolysin XhlA 20.3 1.2E+02 0.0026 19.9 2.6 16 34-49 54-69 (71)
No 1
>PF09775 Keratin_assoc: Keratinocyte-associated protein 2; InterPro: IPR018614 Members of this family comprise various keratinocyte-associated proteins. The function of these proteins is not known.
Probab=100.00 E-value=6.2e-59 Score=348.69 Aligned_cols=113 Identities=48% Similarity=0.750 Sum_probs=109.7
Q ss_pred CC-CchhHHHHHHHHHHHHHHHHHhchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhhhh---cccccCh-HHHHHHHH
Q 033348 1 MA-GSGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET---SGMKTGW-GAVIVAEL 75 (121)
Q Consensus 1 ~~-stg~S~~lS~lLsvlifa~mQm~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e~~---~gfq~~~-pEV~lcl~ 75 (121)
|| |+|+|+++|++|++++|++|||||+||++||++||+|||+|||+|+|+|||+||+|+. +|||+|| |||++|++
T Consensus 1 Mavst~~S~~lS~ll~vlifa~mq~~k~~l~sS~~~ti~GGflgS~lF~~~LTavgN~e~~~fg~~~q~k~fpeV~~~l~ 80 (131)
T PF09775_consen 1 MAVSTGTSLLLSSLLSVLIFAGMQMYKPWLASSQLLTILGGFLGSLLFIFLLTAVGNLEMLLFGKGFQAKLFPEVLLCLF 80 (131)
T ss_pred CCccccHHHHHHHHHHHHHHHHHHHhHHHhccchHHHHHHHHHHHHHHHHHHHHhcchHHhhcCccccccchHHHHHHHH
Confidence 44 7899999999999999999999999999999999999999999999999999999996 5999999 99999999
Q ss_pred HHHHHhhhccchhhhhHHHHHHHHHHHHhhhhhhhhhh
Q 033348 76 IALIAASTVHRVCITTCFLFSAGLLYEVNKLSGMMIAR 113 (121)
Q Consensus 76 ia~~as~~VHRVC~TTc~lFS~~~LYylNkiS~~~y~~ 113 (121)
+|++||++|||||+|||+|||+++|||+||||||+|++
T Consensus 81 ia~~as~~VHRVc~TTc~lFS~~~LYylnkiS~k~y~~ 118 (131)
T PF09775_consen 81 IALIASGTVHRVCITTCFLFSLVALYYLNKISQKTYSS 118 (131)
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999975
No 2
>KOG4615 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.9e-41 Score=245.02 Aligned_cols=121 Identities=79% Similarity=1.253 Sum_probs=118.2
Q ss_pred CCCc-hhHHHHHHHHHHHHHHHHHhchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhhhhcccccChHHHHHHHHHHHH
Q 033348 1 MAGS-GSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQETSGMKTGWGAVIVAELIALI 79 (121)
Q Consensus 1 ~~st-g~S~~lS~lLsvlifa~mQm~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e~~~gfq~~~pEV~lcl~ia~~ 79 (121)
||+. |+||+-|.+.+.++.+.+++|++.+++||+.||+|||-.|++|+|.||++||+|+..|.+.+|+.|++++.+|++
T Consensus 1 magavgtsmlgslivftvilslqeiyrgklasselftilggftssllflfsltfignfqessgiksgwgavilaeiiali 80 (122)
T KOG4615|consen 1 MAGAVGTSMLGSLIVFTVILSLQEIYRGKLASSELFTILGGFTSSLLFLFSLTFIGNFQESSGIKSGWGAVILAEIIALI 80 (122)
T ss_pred CCcchhHHHhhhHHHHHHHHhHHHHHhccchhhHHHHHHhhhHHHHHHHHHHHhhcccccccCcccchhHHHHHHHHHHH
Confidence 5554 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccchhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 033348 80 AASTVHRVCITTCFLFSAGLLYEVNKLSGMMIARSESKTKRH 121 (121)
Q Consensus 80 as~~VHRVC~TTc~lFS~~~LYylNkiS~~~y~~~~~~~~~~ 121 (121)
|+|+|||||+||||+||...||++||||..+.+++|+|+|||
T Consensus 81 aagtvhrvcittcflfsagllyevnkisgymlskteskskrh 122 (122)
T KOG4615|consen 81 AAGTVHRVCITTCFLFSAGLLYEVNKISGYMLSKTESKSKRH 122 (122)
T ss_pred hcCceeehhhHHHHHhcchHhhhhhhhhceeeeccchhhccC
Confidence 999999999999999999999999999999999999999998
No 3
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=86.38 E-value=8 Score=32.76 Aligned_cols=45 Identities=18% Similarity=0.398 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHh----chhhhhccchHHHHHHHHHHHHHHHH
Q 033348 6 SSMLYSFLMFIVILSLQQM----YRGKLASTELFTILGGFISSLIFLVS 50 (121)
Q Consensus 6 ~S~~lS~lLsvlifa~mQm----~~~~lasS~~~Ti~GGflgS~lFi~~ 50 (121)
+++.+|..+.++..+.-|+ .+.++.+......+|-|+|+.+|-++
T Consensus 62 ~~~~fSi~~val~~assq~sPR~l~~f~~d~~~q~vLg~Figtfvy~l~ 110 (371)
T PF10011_consen 62 TGFVFSITLVALQLASSQFSPRLLRNFMRDRVTQVVLGTFIGTFVYSLL 110 (371)
T ss_pred HHHHHHHHHHHHHHHhcccchHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 3455555565555555543 45566777778899999999766444
No 4
>PRK10447 HflBKC-binding inner membrane protein; Provisional
Probab=84.65 E-value=14 Score=29.82 Aligned_cols=82 Identities=13% Similarity=0.224 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHhchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhhhhcccccChHHHHHHHHHHHHHhhhcc
Q 033348 6 SSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQETSGMKTGWGAVIVAELIALIAASTVH 85 (121)
Q Consensus 6 ~S~~lS~lLsvlifa~mQm~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e~~~gfq~~~pEV~lcl~ia~~as~~VH 85 (121)
...+.+.....++|.++-.|. +...+-.+-.||++.+.+.++++.-+.|+= +|.+..+.+.+
T Consensus 104 ~iV~~A~~~Ta~iF~~ls~~a--~~tk~Dfs~lg~~L~~~l~~li~~~l~~~F----~~s~~~~~~~s------------ 165 (219)
T PRK10447 104 DVIALALGGTALVFFCCSAYV--LTTRKDMSFLGGMLMAGIVVVLIGMVANIF----LQLPALHLAIS------------ 165 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH----HccHHHHHHHH------------
Confidence 456677778888888888888 444455778888888888888777777741 22222222222
Q ss_pred chhhhhHHHHHHHHHHHHhhhhh
Q 033348 86 RVCITTCFLFSAGLLYEVNKLSG 108 (121)
Q Consensus 86 RVC~TTc~lFS~~~LYylNkiS~ 108 (121)
.=-.++||...+|+.++|=+
T Consensus 166 ---~~g~llfsgyilyDTq~Ii~ 185 (219)
T PRK10447 166 ---AVFILISSGAILFETSNIIH 185 (219)
T ss_pred ---HHHHHHHHHHHHHHHHHHHc
Confidence 12246899999999999964
No 5
>COG2389 Uncharacterized metal-binding protein [General function prediction only]
Probab=51.84 E-value=36 Score=27.39 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHHHHHH---HHHHhhhhhhh----ccccc----Ch--HHHHHHHHHHHHHhhhccchhh
Q 033348 40 GFISSLIFLV---SLTFIGNFQET----SGMKT----GW--GAVIVAELIALIAASTVHRVCI 89 (121)
Q Consensus 40 GflgS~lFi~---~LTaigN~e~~----~gfq~----~~--pEV~lcl~ia~~as~~VHRVC~ 89 (121)
=|+||++|++ .++.+.-+... .+++. .. -|..+.++..+.++.+-|-|+=
T Consensus 92 ~YL~s~l~l~~~~I~~vv~~l~~~~l~~l~~~ip~~~~~~~~~~ll~l~~Gl~vs~~~H~vsD 154 (179)
T COG2389 92 LYLGSILFLLYFAILGVVSKLGKLPLTLLSFDIPRINLFLKSEELLFLFAGLEVSAMLHIVSD 154 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccccccccCccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999988 66666554443 23322 11 4899999999999999998753
No 6
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=49.32 E-value=19 Score=22.06 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033348 38 LGGFISSLIFLVSLTFI 54 (121)
Q Consensus 38 ~GGflgS~lFi~~LTai 54 (121)
.-||+.+.||++..|+.
T Consensus 5 ~lgfiAt~Lfi~iPt~F 21 (35)
T PRK04989 5 DLGFVASLLFVLVPTVF 21 (35)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35899999999999875
No 7
>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family. Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.
Probab=47.79 E-value=1.2e+02 Score=23.01 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHhchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhhhhcccccChHHHHHHHHHHHHHhhhccch
Q 033348 8 MLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQETSGMKTGWGAVIVAELIALIAASTVHRV 87 (121)
Q Consensus 8 ~~lS~lLsvlifa~mQm~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e~~~gfq~~~pEV~lcl~ia~~as~~VHRV 87 (121)
...+.+...++|.++-.+.-+-. +-.+-.||++.+.++.+.+..+-|+=- +.++.|.+.+..
T Consensus 97 i~~A~~~T~~if~~l~l~a~~tk--~d~~~~g~~l~~~~~~l~~~~l~~~f~----~~~~~~~~~~~~------------ 158 (212)
T cd06181 97 VLQAFGITAAVFGGLSLYALTTK--RDFSFLGGFLFMGLIVLIVASLVNIFL----QSPALQLAISAL------------ 158 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccHHhHHHHHHHHHHHHHHHHHHHHHH----hcHHHHHHHHHH------------
Confidence 45566666666766666554433 334556777766666555555555421 123344443332
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhh
Q 033348 88 CITTCFLFSAGLLYEVNKLSGMMI 111 (121)
Q Consensus 88 C~TTc~lFS~~~LYylNkiS~~~y 111 (121)
..++|+...+|+.+++=++..
T Consensus 159 ---g~~lf~~~l~~Dtq~i~~~~~ 179 (212)
T cd06181 159 ---GVLLFSGYILYDTQLIIGGYR 179 (212)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhh
Confidence 356899999999999976654
No 8
>TIGR03038 PS_II_psbM photosystem II reaction center protein PsbM. Members of this protein family are the photosystem II reaction center M protein, product of the psbM gene, in Cyanobacteria and their derived organelles in plants. This model resembles Pfam model pfam05151 but has cutoffs set to avoid false-positive matches to similar (not necessarily homologous) sequences in species that are not photosynthetic.
Probab=47.64 E-value=23 Score=21.44 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033348 38 LGGFISSLIFLVSLTFI 54 (121)
Q Consensus 38 ~GGflgS~lFi~~LTai 54 (121)
..||+.+.||++..|+.
T Consensus 5 ~l~fiAt~Lfi~iPt~F 21 (33)
T TIGR03038 5 ILGFIATLLFILVPTVF 21 (33)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46999999999999975
No 9
>PF13572 DUF4134: Domain of unknown function (DUF4134)
Probab=47.54 E-value=1e+02 Score=22.13 Aligned_cols=45 Identities=11% Similarity=0.213 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhchhhhhccc-hHHHHHHHHHHHHHHHHHHH
Q 033348 9 LYSFLMFIVILSLQQMYRGKLASTE-LFTILGGFISSLIFLVSLTF 53 (121)
Q Consensus 9 ~lS~lLsvlifa~mQm~~~~lasS~-~~Ti~GGflgS~lFi~~LTa 53 (121)
.++.---+-+.++.|.|.+|-+..| ...-.-+..||.+|+.....
T Consensus 47 ~yaI~aVvglIGai~VY~k~~~Gd~dv~k~i~~w~GaciFli~~a~ 92 (98)
T PF13572_consen 47 MYAIGAVVGLIGAIRVYIKWNNGDQDVKKSIMSWFGACIFLIVAAT 92 (98)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3333334557799999999999886 67777888899999877654
No 10
>CHL00080 psbM photosystem II protein M
Probab=42.13 E-value=29 Score=21.18 Aligned_cols=15 Identities=27% Similarity=0.560 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHh
Q 033348 40 GFISSLIFLVSLTFI 54 (121)
Q Consensus 40 GflgS~lFi~~LTai 54 (121)
||+.+.||+...|+.
T Consensus 7 gfiAt~LFi~iPt~F 21 (34)
T CHL00080 7 AFIATALFILVPTAF 21 (34)
T ss_pred HHHHHHHHHHHHHHH
Confidence 799999999999875
No 11
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=40.52 E-value=1.2e+02 Score=23.93 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.4
Q ss_pred HHHHHHHHhchhhhhccchHHHHHHHHHHHHHHHHHH
Q 033348 16 IVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLT 52 (121)
Q Consensus 16 vlifa~mQm~~~~lasS~~~Ti~GGflgS~lFi~~LT 52 (121)
++.+..--+..+++-.+|...++|+|+|..+=++++-
T Consensus 86 L~~l~v~~~La~~L~~~e~~~~~~~~lg~~l~fl~~r 122 (150)
T COG3086 86 LVGLFLGAILAQYLFFSELIVIFGAFLGLALGFLLAR 122 (150)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555666889999999999999999886555543
No 12
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=39.60 E-value=34 Score=23.66 Aligned_cols=36 Identities=25% Similarity=0.462 Sum_probs=24.5
Q ss_pred HHHHHhchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhh
Q 033348 19 LSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQ 58 (121)
Q Consensus 19 fa~mQm~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e 58 (121)
+...|.+ +++..+||.-| |.+|++ ++=++|++-|+.
T Consensus 19 ~wl~~ll-d~~sp~qW~aI--Gvi~gi-~~~~lt~ltN~Y 54 (68)
T PF04971_consen 19 YWLLQLL-DQFSPSQWAAI--GVIGGI-FFGLLTYLTNLY 54 (68)
T ss_pred HHHHHHH-hccCcccchhH--HHHHHH-HHHHHHHHhHhh
Confidence 3344443 67888899866 667776 556689998864
No 13
>COG0577 SalY ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=38.83 E-value=1.1e+02 Score=23.21 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=27.2
Q ss_pred HhchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhh
Q 033348 23 QMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQ 58 (121)
Q Consensus 23 Qm~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e 58 (121)
++.+-.+..+-..+.+||++|..++++....+....
T Consensus 331 ~i~~~~~~e~~~~~~~g~~~g~~~~~~~~~~i~~~~ 366 (419)
T COG0577 331 EILLQFLLEALILGLIGGLLGILLGLGLSLLLALLL 366 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667778899999999998877777777663
No 14
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=37.35 E-value=1e+02 Score=27.85 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=26.0
Q ss_pred hchhhhhccchHHHHHHHHHHHHHHHHHHHhhhh
Q 033348 24 MYRGKLASTELFTILGGFISSLIFLVSLTFIGNF 57 (121)
Q Consensus 24 m~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~ 57 (121)
+..-+|..+-+.+++||.+|-++=+.....++++
T Consensus 568 I~~qFL~Es~~l~~~GGiiGi~lg~~~~~~~~~~ 601 (648)
T PRK10535 568 VLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLF 601 (648)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677888999999999998877766666654
No 15
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=35.41 E-value=2.4e+02 Score=22.89 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=35.2
Q ss_pred HHHhhhhhhhcccccCh-HHHHHHHHHHHHHhhhcc-----------chhhhhHHHHHHHHHHH-Hhhhhhhhhhhhhhh
Q 033348 51 LTFIGNFQETSGMKTGW-GAVIVAELIALIAASTVH-----------RVCITTCFLFSAGLLYE-VNKLSGMMIARSESK 117 (121)
Q Consensus 51 LTaigN~e~~~gfq~~~-pEV~lcl~ia~~as~~VH-----------RVC~TTc~lFS~~~LYy-lNkiS~~~y~~~~~~ 117 (121)
+.+++++--. .-| -+|+....+..+.+...+ |-..+++++++...-.| +-|.=.---.=+.+|
T Consensus 120 ~V~~SRvYLg----vHfpsDVlaG~~lGi~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~y~~~~~~gvd~~ws~~~ 195 (235)
T cd03381 120 AVCLSRIYLA----AHFPHQVIAGVISGIAVAETFSHIRYIYSASLKRYVLITFFLFGFALGFYLLLKWLGVDLLWSLEK 195 (235)
T ss_pred HHHHHHHhhc----CCCHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 3566665443 345 566666666655444333 33468999997665555 444322222334455
Q ss_pred hhc
Q 033348 118 TKR 120 (121)
Q Consensus 118 ~~~ 120 (121)
++|
T Consensus 196 a~k 198 (235)
T cd03381 196 AFK 198 (235)
T ss_pred HHh
Confidence 544
No 16
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=34.88 E-value=1.4e+02 Score=20.12 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHHHHhchhhhhc-cchHHHHHHHHHHHHHHHHH
Q 033348 6 SSMLYSFLMFIVILSLQQMYRGKLAS-TELFTILGGFISSLIFLVSL 51 (121)
Q Consensus 6 ~S~~lS~lLsvlifa~mQm~~~~las-S~~~Ti~GGflgS~lFi~~L 51 (121)
.++.++.+|++.+| +++.++.+-. |....+.|=|.+..+|++.+
T Consensus 27 v~l~it~lL~~~~~--~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~ 71 (237)
T PF02932_consen 27 VTLGITTLLAMTVF--LLMVAENLPPTSYAKPLDGWYFICTMFVFSA 71 (237)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHH--HhhhhhhhcccccccchhhhhccccchhhhH
Confidence 56777777777766 3456666665 66667777777777776543
No 17
>PRK10332 hypothetical protein; Provisional
Probab=33.80 E-value=38 Score=25.03 Aligned_cols=16 Identities=19% Similarity=0.553 Sum_probs=12.8
Q ss_pred ccCh--HHHHHHHHHHHH
Q 033348 64 KTGW--GAVIVAELIALI 79 (121)
Q Consensus 64 q~~~--pEV~lcl~ia~~ 79 (121)
|.|| ||+++++.+..+
T Consensus 8 q~GFsL~EvlvAm~i~~i 25 (107)
T PRK10332 8 QRGFSLPEVLLAMVLMVM 25 (107)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 4566 999999988766
No 18
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=33.02 E-value=43 Score=26.63 Aligned_cols=18 Identities=33% Similarity=0.506 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 033348 34 LFTILGGFISSLIFLVSL 51 (121)
Q Consensus 34 ~~Ti~GGflgS~lFi~~L 51 (121)
.++++||.+|.++|++..
T Consensus 348 nGallG~liG~~~~~i~~ 365 (367)
T PF04286_consen 348 NGALLGGLIGLLQYLILQ 365 (367)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 488999999999887653
No 19
>PF05151 PsbM: Photosystem II reaction centre M protein (PsbM); InterPro: IPR007826 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbM found in PSII. PsbM is one of the most hydrophobic proteins in the thylakoid membrane. The function of this protein is unknown.; GO: 0015979 photosynthesis, 0019684 photosynthesis, light reaction, 0009523 photosystem II, 0016021 integral to membrane; PDB: 3A0H_m 3ARC_m 3A0B_M 3PRR_M 3PRQ_M 1S5L_M 4FBY_e 3BZ2_M 3BZ1_M 2AXT_M ....
Probab=33.00 E-value=53 Score=19.60 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 033348 39 GGFISSLIFLVSLTFI 54 (121)
Q Consensus 39 GGflgS~lFi~~LTai 54 (121)
.||+.+.||++..|+.
T Consensus 6 l~fiAtaLfi~iPt~F 21 (31)
T PF05151_consen 6 LAFIATALFILIPTAF 21 (31)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH
Confidence 5899999999998875
No 20
>COG4325 Predicted membrane protein [Function unknown]
Probab=31.49 E-value=4.1e+02 Score=24.34 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=32.3
Q ss_pred HhchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhhhhcccccCh-HHH
Q 033348 23 QMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQETSGMKTGW-GAV 70 (121)
Q Consensus 23 Qm~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e~~~gfq~~~-pEV 70 (121)
+|.+..+..+...+.++-|+|. |++.++.+--+-++..-|.+| |-+
T Consensus 115 Rll~~fmrd~~nqvvLa~Flct--Fvysl~vlrtvg~e~d~~g~FIp~~ 161 (464)
T COG4325 115 RLLRTFLRDVPNQVVLAIFLCT--FVYSLGVLRTVGEERDGQGAFIPKV 161 (464)
T ss_pred HHHHHHhhcCchHHHHHHHHHH--HHHHHHHHHHhhhccCccccceehH
Confidence 4667778889999999999997 566666666665654334555 443
No 21
>PRK14094 psbM photosystem II reaction center protein M; Provisional
Probab=30.98 E-value=51 Score=21.63 Aligned_cols=15 Identities=40% Similarity=0.744 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHh
Q 033348 40 GFISSLIFLVSLTFI 54 (121)
Q Consensus 40 GflgS~lFi~~LTai 54 (121)
||+.+.||++..|+.
T Consensus 7 gfiAtaLFi~iPT~F 21 (50)
T PRK14094 7 GFVASLLFVGVPTIF 21 (50)
T ss_pred HHHHHHHHHHHHHHH
Confidence 799999999999986
No 22
>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []. Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].
Probab=30.79 E-value=2.2e+02 Score=20.99 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhh
Q 033348 89 ITTCFLFSAGLLYEVNKLSGM 109 (121)
Q Consensus 89 ~TTc~lFS~~~LYylNkiS~~ 109 (121)
.--.++|+...+|+.|++.++
T Consensus 155 ~~~~~lf~~~l~~Dt~~i~~~ 175 (205)
T PF01027_consen 155 YIGILLFSLYLVYDTQRIIRR 175 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444578999999999999753
No 23
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=28.83 E-value=1.8e+02 Score=21.69 Aligned_cols=37 Identities=16% Similarity=0.371 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhchhhhhccchHHHHHHHHHHH
Q 033348 9 LYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSL 45 (121)
Q Consensus 9 ~lS~lLsvlifa~mQm~~~~lasS~~~Ti~GGflgS~ 45 (121)
+.++++..++....+..+++-...-...++++|+.++
T Consensus 129 ~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~ 165 (193)
T PF06738_consen 129 IVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASL 165 (193)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 3333444443333333333333333344444444443
No 24
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=27.62 E-value=3.3e+02 Score=21.96 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHhh
Q 033348 67 WGAVIVAELIALIAAS 82 (121)
Q Consensus 67 ~pEV~lcl~ia~~as~ 82 (121)
+|-++++++++.++|-
T Consensus 84 ~~R~~lAvliaivIs~ 99 (301)
T PF14362_consen 84 LPRLLLAVLIAIVISE 99 (301)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3888888888877664
No 25
>PF02687 FtsX: FtsX-like permease family; InterPro: IPR003838 This domain is found in predicted permeases and hypothetical transmembrane proteins. P57382 from SWISSPROT has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both P57382 and O54500 from SWISSPROT have been shown to require ATP. This domain contains three transmembrane helices.; GO: 0016020 membrane
Probab=25.43 E-value=1.9e+02 Score=18.57 Aligned_cols=72 Identities=14% Similarity=0.160 Sum_probs=35.8
Q ss_pred chhhhhccchHHHHHHHHHHHHHHHHHHHhhhhhhh-c----ccccChHHHHHHHHHHHHHhhhccchhhhhHHHHHHHH
Q 033348 25 YRGKLASTELFTILGGFISSLIFLVSLTFIGNFQET-S----GMKTGWGAVIVAELIALIAASTVHRVCITTCFLFSAGL 99 (121)
Q Consensus 25 ~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e~~-~----gfq~~~pEV~lcl~ia~~as~~VHRVC~TTc~lFS~~~ 99 (121)
.+..+...-+....|..+|-.+.....-...|.-.. . .....+++++.... ++...+++.+...
T Consensus 44 ~~~~~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~i~~~~~ 112 (121)
T PF02687_consen 44 RKMFLYEALLIALIGILIGILLGILLIIFLINFLSKFFGDSFPFTISPWSFLIVFI-----------IILLISIIASLIP 112 (121)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeCHHHHHHHHH-----------HHHHHHHHHHHHH
Confidence 334444444555666666666666555555555332 1 11222333333332 3344556666666
Q ss_pred HHHHhhhh
Q 033348 100 LYEVNKLS 107 (121)
Q Consensus 100 LYylNkiS 107 (121)
.+.+.|++
T Consensus 113 ~~~~~k~~ 120 (121)
T PF02687_consen 113 IRRILKIN 120 (121)
T ss_pred HHHHHCCC
Confidence 66666653
No 26
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=25.19 E-value=3.7e+02 Score=21.77 Aligned_cols=24 Identities=17% Similarity=0.462 Sum_probs=21.2
Q ss_pred chhhhhHHHHHHHHHHHHhhhhhh
Q 033348 86 RVCITTCFLFSAGLLYEVNKLSGM 109 (121)
Q Consensus 86 RVC~TTc~lFS~~~LYylNkiS~~ 109 (121)
-+|+..-++||...+|+.|||-+.
T Consensus 174 ~IS~lgvlifsgli~yDtq~I~~~ 197 (233)
T COG0670 174 AISVLGVLIFSGLIAYDTQNIKRM 197 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888899999999999999875
No 27
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=24.83 E-value=3.8e+02 Score=21.79 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=48.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhhhhc-cc------------------c
Q 033348 4 SGSSMLYSFLMFIVILSLQQMYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQETS-GM------------------K 64 (121)
Q Consensus 4 tg~S~~lS~lLsvlifa~mQm~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e~~~-gf------------------q 64 (121)
+|.++-+-..+-+++|-++++.- =.+.-..++.||. +.-+.++-..-.|++... .+ .
T Consensus 40 sg~~lGv~~s~li~~~~~~k~lP--rk~~~~~~l~gg~--~~~~y~l~~~~~nl~~il~~~~~~v~~yv~~~G~vsf~vc 115 (249)
T PF10225_consen 40 SGISLGVLASLLILLFQLSKLLP--RKSMFYAVLYGGW--SFGLYFLQQLWENLQSILEEYRIYVLGYVLVVGLVSFAVC 115 (249)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcc--CcchhHHHHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444455566666655 2223356677777 334555566677777662 10 0
Q ss_pred cC---h--H-------HHHHHHHHHHHHhhhccchhhhhHHHHHHH
Q 033348 65 TG---W--G-------AVIVAELIALIAASTVHRVCITTCFLFSAG 98 (121)
Q Consensus 65 ~~---~--p-------EV~lcl~ia~~as~~VHRVC~TTc~lFS~~ 98 (121)
.+ + | =.+=.+..++|-.++-|+-....|++..+.
T Consensus 116 y~~gp~~~~rs~~~v~W~Lqligl~lI~~ss~~~~~a~~~i~~~l~ 161 (249)
T PF10225_consen 116 YRYGPPVDPRSRNFVKWALQLIGLVLIYFSSQDPEFAFAAIILLLL 161 (249)
T ss_pred cccCCCccHhHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 00 0 0 011123456666777788788777766655
No 28
>PRK00708 sec-independent translocase; Provisional
Probab=24.09 E-value=62 Score=26.41 Aligned_cols=20 Identities=15% Similarity=0.685 Sum_probs=16.7
Q ss_pred cccChHHHHHHHHHHHHHhh
Q 033348 63 MKTGWGAVIVAELIALIAAS 82 (121)
Q Consensus 63 fq~~~pEV~lcl~ia~~as~ 82 (121)
|..+|+|+++.+++++++=|
T Consensus 2 FdIG~~ELlvI~vVaLvV~G 21 (209)
T PRK00708 2 FDIGWSELLVIAIVLIVVVG 21 (209)
T ss_pred CCccHHHHHHHHHHHHhhcC
Confidence 45789999999999998755
No 29
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=23.88 E-value=89 Score=18.21 Aligned_cols=19 Identities=37% Similarity=0.455 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 033348 68 GAVIVAELIALIAASTVHR 86 (121)
Q Consensus 68 pEV~lcl~ia~~as~~VHR 86 (121)
.+|++|+++|++++-.--|
T Consensus 4 ~Qi~iaL~~Al~~~iLA~r 22 (29)
T TIGR03053 4 SQIFIALVIALIAGILALR 22 (29)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4788999999987654433
No 30
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=23.34 E-value=83 Score=22.46 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=16.0
Q ss_pred cccChHHHHHHHHHHHHHhh
Q 033348 63 MKTGWGAVIVAELIALIAAS 82 (121)
Q Consensus 63 fq~~~pEV~lcl~ia~~as~ 82 (121)
|..+|||+++-+++++++=|
T Consensus 4 F~iG~~ElliIlvVaLlvfG 23 (90)
T PRK14857 4 FGIGLPEMAVILVIALLVFG 23 (90)
T ss_pred ccccHHHHHHHHHHHHHHcC
Confidence 45789999999999887543
No 31
>COG4420 Predicted membrane protein [Function unknown]
Probab=22.84 E-value=2.1e+02 Score=23.25 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccccCh---HHHHHHHHHHHHHh
Q 033348 41 FISSLIFLVSLTFIGNFQETSGMKTGW---GAVIVAELIALIAA 81 (121)
Q Consensus 41 flgS~lFi~~LTaigN~e~~~gfq~~~---pEV~lcl~ia~~as 81 (121)
|+++-..+|++-.+.|+.-..| ..| |=+++-+++++.|+
T Consensus 60 fil~~~~~ll~Wi~lNl~~~~~--~~wDpyPFi~LnLllS~~Aa 101 (191)
T COG4420 60 FILTFTLLLLLWIVLNLFLVPG--LAWDPYPFILLNLLLSTLAA 101 (191)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC--CcCCCccHHHHHHHHHHHHH
Confidence 5555555566667789887644 334 88999998887765
No 32
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism]
Probab=21.86 E-value=5.2e+02 Score=24.82 Aligned_cols=73 Identities=19% Similarity=0.392 Sum_probs=52.5
Q ss_pred HHHHHHHhchhhhhccchHHHHHHHHHHHHHHH--------HHHHhhhhhhh--cccccCh---HHHHHHHHHHHHHhhh
Q 033348 17 VILSLQQMYRGKLASTELFTILGGFISSLIFLV--------SLTFIGNFQET--SGMKTGW---GAVIVAELIALIAAST 83 (121)
Q Consensus 17 lifa~mQm~~~~lasS~~~Ti~GGflgS~lFi~--------~LTaigN~e~~--~gfq~~~---pEV~lcl~ia~~as~~ 83 (121)
++.+=+.=..+-+..-||.|.+ |++++ |++ +.+++|++-+. ++-|.+. -.|++-+-.++.+|+-
T Consensus 509 LIl~d~~D~e~il~rVews~LL--Ffaal-FI~~e~v~~lGli~~l~dlte~vil~v~e~~~~~vAi~iilw~SAlasaf 585 (685)
T KOG2639|consen 509 LILADIKDIEAILHRVEWSTLL--FFAAL-FILMEAVDKLGLIEWLGDLTEPVILSVGESYRLMVAIVIILWVSALASAF 585 (685)
T ss_pred HHHhchhhHHHHHHHhhHHHHH--HHHHH-HHHHHHHHhhCHHHHHHHhhhHHhhhcchhhhhHHHHHHHHHHHHHHHHH
Confidence 3445555566777888887765 44444 766 46788887776 3445543 7788888999999999
Q ss_pred ccchhhhhH
Q 033348 84 VHRVCITTC 92 (121)
Q Consensus 84 VHRVC~TTc 92 (121)
||.|-+|+-
T Consensus 586 idNipvt~~ 594 (685)
T KOG2639|consen 586 IDNIPVTAI 594 (685)
T ss_pred hccCcchHH
Confidence 999998875
No 33
>TIGR01410 tatB twin arginine-targeting protein translocase TatB. This model represents the TatB protein of a Sec-independent system for transporting folded proteins, often with a bound redox cofactor, across the bacterial inner membrane. TatC is the multiple membrane spanning component. TatB, like the related TatA/E proteins, appears to span the membrane one time. The tat system recognizes proteins with an elongated signal sequence containing a conserved R-R in a motif approximated by RRxFLK N-terminal to the transmembrane helix. TIGRFAMs model TIGR01409 describes this twin-Arg signal sequence. A similar system, termed Delta-pH-dependent transport, operates on chloroplast-encoded proteins.
Probab=21.63 E-value=81 Score=21.66 Aligned_cols=19 Identities=16% Similarity=0.545 Sum_probs=14.7
Q ss_pred cccChHHHHHHHHHHHHHh
Q 033348 63 MKTGWGAVIVAELIALIAA 81 (121)
Q Consensus 63 fq~~~pEV~lcl~ia~~as 81 (121)
|..+|||.++-+++|++.=
T Consensus 1 f~ig~~EllvI~vvallv~ 19 (80)
T TIGR01410 1 FDIGFSELLLIAVVALVVL 19 (80)
T ss_pred CCCcHHHHHHHHHHHHheE
Confidence 4467899999998888753
No 34
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=21.46 E-value=5.6e+02 Score=22.45 Aligned_cols=66 Identities=12% Similarity=0.096 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhcccccChHHHHHHHHHHHHH--hhhccchhhhhHHHHHHHHHHHHhhhhhh
Q 033348 34 LFTILGGFISSLIFLVSLTFIGNFQETSGMKTGWGAVIVAELIALIA--ASTVHRVCITTCFLFSAGLLYEVNKLSGM 109 (121)
Q Consensus 34 ~~Ti~GGflgS~lFi~~LTaigN~e~~~gfq~~~pEV~lcl~ia~~a--s~~VHRVC~TTc~lFS~~~LYylNkiS~~ 109 (121)
.++++|..+|.+..++++-.+.+++ +..+++.+.++. ..+-|+--....+.|.+..+.-+|--.+.
T Consensus 394 ~G~l~~~~~a~~~~~~vlP~~~~f~----------~L~l~l~~~l~~~~~~~~~p~~~~~g~~~~v~f~~~~~~~n~~ 461 (650)
T PF04632_consen 394 IGALLGAVLAFLYLFFVLPHLDGFP----------LLALVLAPFLFLGGLLMARPRTAYIGLGFAVFFLLLLGPGNPY 461 (650)
T ss_pred HHHHHHHHHHHHHHHHhhhccCcHH----------HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhcCCCCC
Confidence 4667777777777777777777644 444555544443 33445555555555555544444433333
No 35
>PRK04098 sec-independent translocase; Provisional
Probab=21.17 E-value=80 Score=24.79 Aligned_cols=20 Identities=20% Similarity=0.361 Sum_probs=15.9
Q ss_pred cccChHHHHHHHHHHHHHhh
Q 033348 63 MKTGWGAVIVAELIALIAAS 82 (121)
Q Consensus 63 fq~~~pEV~lcl~ia~~as~ 82 (121)
|..+|||+++-+++|+++=|
T Consensus 2 fgiG~~EllvI~vVaLlvfG 21 (158)
T PRK04098 2 FGMGFFEILVILVVAIIFLG 21 (158)
T ss_pred CCCcHHHHHHHHHHHHhhcC
Confidence 34689999999999988644
No 36
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=21.05 E-value=4.1e+02 Score=20.70 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 033348 31 STELFTILGGFISSLIFLVSLTFIGNFQET 60 (121)
Q Consensus 31 sS~~~Ti~GGflgS~lFi~~LTaigN~e~~ 60 (121)
..+.....+|.+|++.|-|+-|+-.|--+.
T Consensus 76 ~~~~~~~~a~lv~al~fafS~sfW~~Av~a 105 (178)
T PF11028_consen 76 AQTIAILGAGLVGALAFAFSDSFWFQAVEA 105 (178)
T ss_pred hhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 344677888999999999998887665443
No 37
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.91 E-value=88 Score=24.48 Aligned_cols=37 Identities=22% Similarity=0.224 Sum_probs=24.3
Q ss_pred hccchhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhcC
Q 033348 83 TVHRVCITTCFLFSAGLLYEVNKLSGMMIARSESKTKRH 121 (121)
Q Consensus 83 ~VHRVC~TTc~lFS~~~LYylNkiS~~~y~~~~~~~~~~ 121 (121)
+++|.=.--|.+.+++++|.+=|+-.. .+...|+|||
T Consensus 93 ~l~R~~~Vl~g~s~l~i~yfvir~~R~--r~~~rktRkY 129 (163)
T PF06679_consen 93 MLKRALYVLVGLSALAILYFVIRTFRL--RRRNRKTRKY 129 (163)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhh--ccccccceee
Confidence 356666666778888889988775322 2345677777
No 38
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=20.77 E-value=1.9e+02 Score=18.80 Aligned_cols=27 Identities=22% Similarity=0.433 Sum_probs=22.4
Q ss_pred hccchHHHHHHHHHHHHHHHHHHHhhh
Q 033348 30 ASTELFTILGGFISSLIFLVSLTFIGN 56 (121)
Q Consensus 30 asS~~~Ti~GGflgS~lFi~~LTaigN 56 (121)
..+.+.-|+.|.+...+|+..|-.+=|
T Consensus 27 ~~~p~~~Ii~gii~~~~fV~~Lv~lV~ 53 (56)
T PF11174_consen 27 QGSPVHFIIVGIILAALFVAGLVLLVN 53 (56)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 456678999999999999998877655
No 39
>TIGR03434 ADOP Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.
Probab=20.64 E-value=6.2e+02 Score=22.71 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=37.2
Q ss_pred hchhhhhccchHHHHHHHHHHHHHHHHHHHhhhhhh-hccc--ccCh-HHH-HHHHHHHHHHhhhccchhhhhHHHHHHH
Q 033348 24 MYRGKLASTELFTILGGFISSLIFLVSLTFIGNFQE-TSGM--KTGW-GAV-IVAELIALIAASTVHRVCITTCFLFSAG 98 (121)
Q Consensus 24 m~~~~lasS~~~Ti~GGflgS~lFi~~LTaigN~e~-~~gf--q~~~-pEV-~lcl~ia~~as~~VHRVC~TTc~lFS~~ 98 (121)
+.+..+..+-+..++|+.+|-++-.+..-.++++-. ...+ ...+ |.. +....++ +-+++++++.
T Consensus 317 i~~~~l~E~~~l~~~~~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~ 385 (803)
T TIGR03434 317 LVRQLLTESLLLALAGGALGLLLAYWGLRLLLALLPASLPRLAEISLDGRVLLFALALS-----------LLTGLLFGLA 385 (803)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccceecccCHHHHHHHHHHH-----------HHHHHHHHHH
Confidence 334455556667778888887655554444444311 1111 1122 332 2222222 2245677777
Q ss_pred HHHHHhhhh
Q 033348 99 LLYEVNKLS 107 (121)
Q Consensus 99 ~LYylNkiS 107 (121)
-.+.+.|++
T Consensus 386 p~~~~~~~~ 394 (803)
T TIGR03434 386 PALQATRSD 394 (803)
T ss_pred HHHHHhCcC
Confidence 777777765
No 40
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=20.32 E-value=1.2e+02 Score=19.94 Aligned_cols=16 Identities=38% Similarity=0.814 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 033348 34 LFTILGGFISSLIFLV 49 (121)
Q Consensus 34 ~~Ti~GGflgS~lFi~ 49 (121)
++|+.|+.++.++.++
T Consensus 54 ~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 54 WRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4788888888765543
Done!