Query 033348
Match_columns 121
No_of_seqs 57 out of 59
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 21:24:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033348.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033348hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_M Photosystem II reaction 46.2 15 0.00052 21.7 2.4 16 39-54 6-21 (36)
2 2ls2_A High affinity copper up 29.0 17 0.00059 19.7 0.0 17 38-54 4-20 (26)
3 2l16_A SEC-independent protein 18.7 87 0.003 20.6 2.7 19 64-82 4-22 (78)
4 1jb0_M Photosystem 1 reaction 18.1 91 0.0031 17.7 2.3 19 68-86 6-24 (31)
5 1jfi_A Transcription regulator 15.2 1.1E+02 0.0037 20.5 2.6 39 81-119 24-62 (98)
6 2wdq_D Succinate dehydrogenase 9.5 1.6E+02 0.0056 19.8 2.1 32 83-114 17-48 (115)
7 2l2t_A Receptor tyrosine-prote 8.7 3.6E+02 0.012 16.0 3.2 21 31-51 6-26 (44)
8 2knc_A Integrin alpha-IIB; tra 8.1 4.3E+02 0.015 16.3 3.4 23 32-54 10-32 (54)
9 3plx_A Aspartate 1-decarboxyla 8.0 60 0.002 17.9 -0.6 11 82-92 11-21 (27)
10 4b4a_A TATC, SEC-independent p 7.4 5.2E+02 0.018 19.8 4.4 44 65-111 186-230 (249)
No 1
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=46.20 E-value=15 Score=21.73 Aligned_cols=16 Identities=19% Similarity=0.465 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 033348 39 GGFISSLIFLVSLTFI 54 (121)
Q Consensus 39 GGflgS~lFi~~LTai 54 (121)
.||+.+.||++..|+.
T Consensus 6 l~fiAt~Lfi~iPt~F 21 (36)
T 3arc_M 6 LGLIATALFVLVPSVF 21 (36)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999999999986
No 2
>2ls2_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=29.00 E-value=17 Score=19.71 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 033348 38 LGGFISSLIFLVSLTFI 54 (121)
Q Consensus 38 ~GGflgS~lFi~~LTai 54 (121)
.+|+++|.+-++++++.
T Consensus 4 ~~~~v~Sci~ifll~~~ 20 (26)
T 2ls2_A 4 AGEMAGAFVAVFLLAMF 20 (26)
Confidence 57899999888887753
No 3
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=18.70 E-value=87 Score=20.63 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=14.8
Q ss_pred ccChHHHHHHHHHHHHHhh
Q 033348 64 KTGWGAVIVAELIALIAAS 82 (121)
Q Consensus 64 q~~~pEV~lcl~ia~~as~ 82 (121)
..+|||.++-++++++.=|
T Consensus 4 ~ig~~ElliIlvVaLlvfG 22 (78)
T 2l16_A 4 NIGIPGLILIFVIALIIFG 22 (78)
T ss_dssp SSCHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhheeC
Confidence 4578999999999887543
No 4
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=18.05 E-value=91 Score=17.66 Aligned_cols=19 Identities=42% Similarity=0.431 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhccc
Q 033348 68 GAVIVAELIALIAASTVHR 86 (121)
Q Consensus 68 pEV~lcl~ia~~as~~VHR 86 (121)
.+|++++++|++.+-.--|
T Consensus 6 ~Qi~iAL~~Al~~~iLA~r 24 (31)
T 1jb0_M 6 TQVYVALVIALLPAVLAFR 24 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5789999999987755444
No 5
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=15.25 E-value=1.1e+02 Score=20.47 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=31.5
Q ss_pred hhhccchhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Q 033348 81 ASTVHRVCITTCFLFSAGLLYEVNKLSGMMIARSESKTK 119 (121)
Q Consensus 81 s~~VHRVC~TTc~lFS~~~LYylNkiS~~~y~~~~~~~~ 119 (121)
..-++||+..+-++++.+.=|++..+...-|+....+.|
T Consensus 24 ~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~kr 62 (98)
T 1jfi_A 24 DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNA 62 (98)
T ss_dssp STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345789999999999999999999999998876655444
No 6
>2wdq_D Succinate dehydrogenase hydrophobic membrane ANCH subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_D* 2acz_D* 1nek_D* 2wdr_D* 2wdv_D* 2wp9_D* 2wu2_D* 2ws3_D* 2wu5_D*
Probab=9.53 E-value=1.6e+02 Score=19.81 Aligned_cols=32 Identities=6% Similarity=-0.089 Sum_probs=25.2
Q ss_pred hccchhhhhHHHHHHHHHHHHhhhhhhhhhhh
Q 033348 83 TVHRVCITTCFLFSAGLLYEVNKLSGMMIARS 114 (121)
Q Consensus 83 ~VHRVC~TTc~lFS~~~LYylNkiS~~~y~~~ 114 (121)
..||++.-.=+++....++.+...+...|+..
T Consensus 17 i~~RiSgv~L~~l~~~~l~~~~~~~~~~y~~~ 48 (115)
T 2wdq_D 17 ILVRATAIVLTLYIIYMVGFFATSGELTYEVW 48 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccCHHHH
Confidence 46888888888888888888888777777543
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=8.67 E-value=3.6e+02 Score=16.01 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=15.3
Q ss_pred ccchHHHHHHHHHHHHHHHHH
Q 033348 31 STELFTILGGFISSLIFLVSL 51 (121)
Q Consensus 31 sS~~~Ti~GGflgS~lFi~~L 51 (121)
+++...|.+|-+|.++-++.+
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii 26 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIV 26 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEeehHHHHHHHHH
Confidence 567788999999877654443
No 8
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=8.06 E-value=4.3e+02 Score=16.34 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=17.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh
Q 033348 32 TELFTILGGFISSLIFLVSLTFI 54 (121)
Q Consensus 32 S~~~Ti~GGflgS~lFi~~LTai 54 (121)
..+..|+++.+|.++.+.+++++
T Consensus 10 vp~wiIi~svl~GLllL~li~~~ 32 (54)
T 2knc_A 10 IPIWWVLVGVLGGLLLLTILVLA 32 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888777777665
No 9
>3plx_A Aspartate 1-decarboxylase; structural genomics, center for structural genomics of infec diseases, csgid, double-PSI beta-barrel; 1.75A {Campylobacter jejuni subsp}
Probab=8.05 E-value=60 Score=17.93 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=7.8
Q ss_pred hhccchhhhhH
Q 033348 82 STVHRVCITTC 92 (121)
Q Consensus 82 ~~VHRVC~TTc 92 (121)
+=+||+.+|-+
T Consensus 11 sKiHratVT~a 21 (27)
T 3plx_A 11 SKIHRASVTEA 21 (27)
T ss_dssp EEEEEEECCEE
T ss_pred HhhhceEEecc
Confidence 34799888854
No 10
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=7.43 E-value=5.2e+02 Score=19.81 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=24.5
Q ss_pred cCh-HHHHHHHHHHHHHhhhccchhhhhHHHHHHHHHHHHhhhhhhhh
Q 033348 65 TGW-GAVIVAELIALIAASTVHRVCITTCFLFSAGLLYEVNKLSGMMI 111 (121)
Q Consensus 65 ~~~-pEV~lcl~ia~~as~~VHRVC~TTc~lFS~~~LYylNkiS~~~y 111 (121)
.+| -.++.+.++|++..= .+=--.-+...+..|||+.=.-.+..
T Consensus 186 ~~Rr~~iv~~~v~aAiiTP---D~~sq~llaiPl~lLYEisi~i~~~~ 230 (249)
T 4b4a_A 186 SFRKYFIVIAFVIGAIIAP---DVSTQVLMAIPLLLLYEISIFLGKLA 230 (249)
T ss_dssp HHHHHHHHHHHHHHHHHCS---SHHHHHHHHHHHHHHHHHHHHTCCC-
T ss_pred HHhHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345 445556666665554 33222334567889999875444444
Done!