Query 033348
Match_columns 121
No_of_seqs 57 out of 59
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 21:24:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033348.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033348hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 44.9 7.7 0.00056 21.6 2.4 15 40-54 7-21 (36)
2 d1oedb_ f.36.1.1 (B:) Acetylch 14.6 56 0.004 22.0 2.9 46 6-53 33-79 (250)
3 d1oeda_ f.36.1.1 (A:) Acetylch 8.7 1.6E+02 0.012 19.4 3.7 45 6-52 33-78 (227)
4 d1oedc_ f.36.1.1 (C:) Acetylch 6.2 2.5E+02 0.019 18.3 3.7 44 6-51 33-77 (260)
5 d1xrda1 f.3.1.1 (A:1-52) Light 5.8 1.7E+02 0.012 16.9 2.1 23 70-92 13-36 (52)
6 d1r3jc_ f.14.1.1 (C:) Potassiu 5.8 2.4E+02 0.018 16.5 3.1 7 115-121 97-103 (103)
7 d2jmfa1 b.72.1.1 (A:521-553) U 5.5 19 0.0014 19.0 -2.3 11 100-110 17-27 (33)
8 d1rk8b_ d.232.1.1 (B:) Mago na 5.5 1.1E+02 0.0082 20.9 1.4 10 91-100 128-137 (141)
9 d1jb0j_ f.23.18.1 (J:) Subunit 4.8 2.4E+02 0.018 15.4 2.4 21 86-106 12-32 (41)
10 d1nekd_ f.21.2.2 (D:) Succinat 4.3 2.2E+02 0.016 17.3 2.2 32 85-116 17-48 (113)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=44.94 E-value=7.7 Score=21.62 Aligned_cols=15 Identities=20% Similarity=0.594 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHh
Q 033348 40 GFISSLIFLVSLTFI 54 (121)
Q Consensus 40 GflgS~lFi~~LTai 54 (121)
||+.+.||++..|..
T Consensus 7 g~iAt~LFilvPt~F 21 (36)
T d2axtm1 7 GLIATALFVLVPSVF 21 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999988865
No 2
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=14.61 E-value=56 Score=22.03 Aligned_cols=46 Identities=15% Similarity=0.278 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHhchhhhhc-cchHHHHHHHHHHHHHHHHHHH
Q 033348 6 SSMLYSFLMFIVILSLQQMYRGKLAS-TELFTILGGFISSLIFLVSLTF 53 (121)
Q Consensus 6 ~S~~lS~lLsvlifa~mQm~~~~las-S~~~Ti~GGflgS~lFi~~LTa 53 (121)
.++.++.+|++.+| +++.++.+-. |+...++|-|....+++..++.
T Consensus 33 ~~l~it~lL~~~~~--~~~v~~~~P~~s~~~p~i~~~~~~~~~~~~~~~ 79 (250)
T d1oedb_ 33 MSLSISALLAVTVF--LLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHH--HHHHHHhCCCCcCcchHHHHHHHHHHHHHHHHH
Confidence 46667777777766 4456666664 4556677777766655555443
No 3
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.68 E-value=1.6e+02 Score=19.35 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHhchhhhhc-cchHHHHHHHHHHHHHHHHHH
Q 033348 6 SSMLYSFLMFIVILSLQQMYRGKLAS-TELFTILGGFISSLIFLVSLT 52 (121)
Q Consensus 6 ~S~~lS~lLsvlifa~mQm~~~~las-S~~~Ti~GGflgS~lFi~~LT 52 (121)
.++.++.+|++.+| +++.++.+-. |+-..++|=|.+..+.+..++
T Consensus 33 i~l~it~lL~~~v~--~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~s 78 (227)
T d1oeda_ 33 MTLSISVLLSLTVF--LLVIVELIPSTSSAVPLIGKYMLFTMIFVISS 78 (227)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHH--HHHHHHhCCCcccCcCccchHHHHHHHHHHHH
Confidence 56777777777776 4667777753 344455666665554444433
No 4
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=6.17 E-value=2.5e+02 Score=18.32 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHhchhhhhc-cchHHHHHHHHHHHHHHHHH
Q 033348 6 SSMLYSFLMFIVILSLQQMYRGKLAS-TELFTILGGFISSLIFLVSL 51 (121)
Q Consensus 6 ~S~~lS~lLsvlifa~mQm~~~~las-S~~~Ti~GGflgS~lFi~~L 51 (121)
.++.++.+|++.+| +++.++.+-. |+-..++|=|....+.+..+
T Consensus 33 ~~l~it~lLs~~vf--~~~v~~~lP~tS~~vPli~~y~~~~~~~v~~ 77 (260)
T d1oedc_ 33 MSTAISVLLAQAVF--LLLTSQRLPETALAVPLIGKYLMFIMSLVTG 77 (260)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHSCCCTHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHH--HHHHHHhCCCCCCCcchHHHHHHHHHHHHHH
Confidence 45666677777666 3455666654 34444556565544444433
No 5
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=5.81 E-value=1.7e+02 Score=16.92 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=14.1
Q ss_pred HHHHHHHHHH-HhhhccchhhhhH
Q 033348 70 VIVAELIALI-AASTVHRVCITTC 92 (121)
Q Consensus 70 V~lcl~ia~~-as~~VHRVC~TTc 92 (121)
+++++.+-++ .|-+||=++.+|-
T Consensus 13 ~lva~~~fL~~LAl~IHfiLLSt~ 36 (52)
T d1xrda1 13 ALVGLATFLFVLALLIHFILLSTE 36 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 4455555444 5677887777664
No 6
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=5.75 E-value=2.4e+02 Score=16.54 Aligned_cols=7 Identities=29% Similarity=0.596 Sum_probs=3.6
Q ss_pred hhhhhcC
Q 033348 115 ESKTKRH 121 (121)
Q Consensus 115 ~~~~~~~ 121 (121)
++|.|+|
T Consensus 97 ~~~rr~h 103 (103)
T d1r3jc_ 97 EQERRGH 103 (103)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 4455655
No 7
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.49 E-value=19 Score=19.02 Aligned_cols=11 Identities=9% Similarity=0.015 Sum_probs=7.0
Q ss_pred HHHHhhhhhhh
Q 033348 100 LYEVNKLSGMM 110 (121)
Q Consensus 100 LYylNkiS~~~ 110 (121)
.||+|+..+.+
T Consensus 17 ~Yyinh~t~~T 27 (33)
T d2jmfa1 17 RFFVDHNTRRT 27 (33)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCcE
Confidence 37777776653
No 8
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.45 E-value=1.1e+02 Score=20.94 Aligned_cols=10 Identities=40% Similarity=0.617 Sum_probs=6.6
Q ss_pred hHHHHHHHHH
Q 033348 91 TCFLFSAGLL 100 (121)
Q Consensus 91 Tc~lFS~~~L 100 (121)
-|++||++.|
T Consensus 128 kclvfsLi~l 137 (141)
T d1rk8b_ 128 KCLVFSLIGL 137 (141)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4677777665
No 9
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=4.84 E-value=2.4e+02 Score=15.42 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=16.4
Q ss_pred chhhhhHHHHHHHHHHHHhhh
Q 033348 86 RVCITTCFLFSAGLLYEVNKL 106 (121)
Q Consensus 86 RVC~TTc~lFS~~~LYylNki 106 (121)
.|-.|..+-|-.+.+-++||.
T Consensus 12 PVla~~w~~~tAG~lIEiNRF 32 (41)
T d1jb0j_ 12 PVLAAIWMTITAGILIEFNRF 32 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455677788888889999984
No 10
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.29 E-value=2.2e+02 Score=17.29 Aligned_cols=32 Identities=6% Similarity=-0.125 Sum_probs=0.0
Q ss_pred cchhhhhHHHHHHHHHHHHhhhhhhhhhhhhh
Q 033348 85 HRVCITTCFLFSAGLLYEVNKLSGMMIARSES 116 (121)
Q Consensus 85 HRVC~TTc~lFS~~~LYylNkiS~~~y~~~~~ 116 (121)
|||+.--=+.+.+..+|++.+.....|..-.+
T Consensus 17 qRvSAv~l~~l~~~~~~~~~~~~~~~y~~~~~ 48 (113)
T d1nekd_ 17 VRATAIVLTLYIIYMVGFFATSGELTYEVWIG 48 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Done!