Query 033349
Match_columns 121
No_of_seqs 105 out of 1211
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 12:49:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.9E-28 4.1E-33 158.5 10.0 99 16-120 8-110 (205)
2 KOG0070 GTP-binding ADP-ribosy 99.9 9.8E-28 2.1E-32 154.0 7.9 114 1-121 1-114 (181)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.9 9.2E-27 2E-31 150.7 10.7 100 15-120 20-123 (221)
4 PLN00223 ADP-ribosylation fact 99.9 5.2E-26 1.1E-30 149.0 13.8 113 1-120 1-113 (181)
5 PTZ00133 ADP-ribosylation fact 99.9 7.9E-26 1.7E-30 148.2 13.6 113 1-120 1-113 (182)
6 KOG0092 GTPase Rab5/YPT51 and 99.9 1.4E-25 3.1E-30 144.8 9.1 99 15-119 3-105 (200)
7 KOG0071 GTP-binding ADP-ribosy 99.9 1.9E-24 4.2E-29 133.5 11.0 113 1-120 1-113 (180)
8 KOG0079 GTP-binding protein H- 99.9 2.3E-24 5E-29 134.4 9.8 97 18-120 9-109 (198)
9 smart00177 ARF ARF-like small 99.9 1E-23 2.3E-28 137.3 12.8 109 1-120 1-109 (175)
10 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 8.4E-24 1.8E-28 138.7 12.0 100 14-119 2-105 (182)
11 KOG0080 GTPase Rab18, small G 99.9 7.4E-24 1.6E-28 133.7 10.2 96 16-117 10-109 (209)
12 cd04120 Rab12 Rab12 subfamily. 99.9 2.2E-23 4.9E-28 138.7 12.6 95 18-118 1-99 (202)
13 PF00025 Arf: ADP-ribosylation 99.9 6.1E-24 1.3E-28 138.6 9.5 109 5-120 1-110 (175)
14 cd01875 RhoG RhoG subfamily. 99.9 2E-23 4.3E-28 137.7 11.9 97 16-118 2-102 (191)
15 KOG0078 GTP-binding protein SE 99.9 1.7E-23 3.8E-28 136.9 11.1 99 16-120 11-113 (207)
16 KOG0098 GTPase Rab2, small G p 99.9 2.2E-23 4.8E-28 134.1 11.2 99 16-120 5-107 (216)
17 cd04131 Rnd Rnd subfamily. Th 99.9 2.1E-23 4.5E-28 136.4 11.2 97 17-119 1-101 (178)
18 cd04128 Spg1 Spg1p. Spg1p (se 99.9 3.5E-23 7.6E-28 135.7 12.1 96 18-119 1-100 (182)
19 cd04133 Rop_like Rop subfamily 99.9 2.7E-23 5.8E-28 135.7 11.0 96 18-119 2-101 (176)
20 cd04121 Rab40 Rab40 subfamily. 99.9 5.6E-23 1.2E-27 135.5 12.7 98 16-119 5-106 (189)
21 cd04102 RabL3 RabL3 (Rab-like3 99.9 5.2E-23 1.1E-27 136.9 12.0 96 18-119 1-105 (202)
22 cd04150 Arf1_5_like Arf1-Arf5- 99.9 6.5E-23 1.4E-27 131.6 11.9 95 18-119 1-95 (159)
23 cd04149 Arf6 Arf6 subfamily. 99.9 9.3E-23 2E-27 132.1 12.5 99 15-120 7-105 (168)
24 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 8E-23 1.7E-27 138.5 12.3 98 16-119 12-113 (232)
25 KOG0087 GTPase Rab11/YPT3, sma 99.9 1.5E-23 3.2E-28 137.2 8.3 98 17-120 14-115 (222)
26 cd01874 Cdc42 Cdc42 subfamily. 99.9 8.4E-23 1.8E-27 133.1 11.5 95 18-118 2-100 (175)
27 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 2.1E-22 4.5E-27 131.0 13.2 109 5-120 3-111 (174)
28 cd04122 Rab14 Rab14 subfamily. 99.9 1.7E-22 3.7E-27 130.1 12.3 96 17-118 2-101 (166)
29 KOG0086 GTPase Rab4, small G p 99.9 6.3E-23 1.4E-27 128.7 9.8 96 17-118 9-108 (214)
30 cd04108 Rab36_Rab34 Rab34/Rab3 99.9 1.6E-22 3.4E-27 131.2 11.9 95 19-119 2-100 (170)
31 KOG0095 GTPase Rab30, small G 99.9 1.1E-22 2.3E-27 127.2 10.4 96 17-118 7-106 (213)
32 cd04107 Rab32_Rab38 Rab38/Rab3 99.9 1.9E-22 4.1E-27 133.9 12.4 95 18-118 1-100 (201)
33 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.3E-22 4.9E-27 129.8 11.8 95 19-119 1-95 (164)
34 KOG0073 GTP-binding ADP-ribosy 99.9 3.2E-22 6.9E-27 126.4 11.7 107 7-120 5-112 (185)
35 cd04161 Arl2l1_Arl13_like Arl2 99.9 3.6E-22 7.7E-27 129.1 12.2 95 19-120 1-95 (167)
36 PLN03071 GTP-binding nuclear p 99.9 2.1E-22 4.6E-27 135.5 11.5 99 15-119 11-113 (219)
37 cd04117 Rab15 Rab15 subfamily. 99.9 3.3E-22 7.1E-27 128.5 11.9 96 18-119 1-100 (161)
38 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 5.1E-22 1.1E-26 129.1 12.7 95 17-117 2-99 (172)
39 cd04136 Rap_like Rap-like subf 99.9 3.8E-22 8.2E-27 127.7 11.7 97 17-119 1-100 (163)
40 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.9 3.5E-22 7.7E-27 134.6 12.1 94 18-117 2-99 (222)
41 cd04119 RJL RJL (RabJ-Like) su 99.9 4.9E-22 1.1E-26 127.4 12.2 96 18-119 1-100 (168)
42 cd04127 Rab27A Rab27a subfamil 99.9 4.5E-22 9.8E-27 129.5 11.9 98 16-119 3-114 (180)
43 PTZ00369 Ras-like protein; Pro 99.9 5.2E-22 1.1E-26 130.6 12.3 99 15-119 3-104 (189)
44 cd04175 Rap1 Rap1 subgroup. T 99.9 6.1E-22 1.3E-26 127.2 12.1 97 17-119 1-100 (164)
45 cd04110 Rab35 Rab35 subfamily. 99.9 7.1E-22 1.5E-26 131.0 12.7 98 16-119 5-106 (199)
46 cd01867 Rab8_Rab10_Rab13_like 99.9 7.3E-22 1.6E-26 127.4 12.2 97 17-119 3-103 (167)
47 cd04158 ARD1 ARD1 subfamily. 99.9 6.7E-22 1.4E-26 128.0 12.0 95 19-120 1-95 (169)
48 cd04109 Rab28 Rab28 subfamily. 99.9 7.2E-22 1.6E-26 132.5 12.1 96 18-119 1-101 (215)
49 cd04176 Rap2 Rap2 subgroup. T 99.9 9.3E-22 2E-26 126.1 11.9 97 17-119 1-100 (163)
50 PF00071 Ras: Ras family; Int 99.9 1.1E-21 2.5E-26 125.5 12.3 95 19-119 1-99 (162)
51 KOG0076 GTP-binding ADP-ribosy 99.9 1.8E-22 3.9E-27 128.6 8.4 120 1-120 1-121 (197)
52 PLN00023 GTP-binding protein; 99.9 6.1E-22 1.3E-26 138.7 11.8 100 14-119 18-134 (334)
53 cd00877 Ran Ran (Ras-related n 99.9 4.4E-22 9.4E-27 128.6 10.3 96 18-119 1-100 (166)
54 smart00178 SAR Sar1p-like memb 99.9 2.2E-21 4.9E-26 127.2 13.6 109 4-119 3-112 (184)
55 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.9 1.7E-21 3.7E-26 125.3 12.6 96 17-118 2-101 (166)
56 cd01865 Rab3 Rab3 subfamily. 99.9 1.4E-21 2.9E-26 125.9 12.2 96 18-119 2-101 (165)
57 cd04116 Rab9 Rab9 subfamily. 99.9 1.6E-21 3.5E-26 125.9 12.1 99 15-119 3-105 (170)
58 cd01871 Rac1_like Rac1-like su 99.9 1.2E-21 2.5E-26 127.6 11.5 96 17-118 1-100 (174)
59 KOG0091 GTPase Rab39, small G 99.9 2.6E-22 5.6E-27 127.0 7.7 95 17-117 8-107 (213)
60 cd04154 Arl2 Arl2 subfamily. 99.9 2.5E-21 5.4E-26 125.6 12.7 99 14-119 11-109 (173)
61 cd04138 H_N_K_Ras_like H-Ras/N 99.9 2.6E-21 5.6E-26 123.4 12.5 97 17-119 1-100 (162)
62 cd04157 Arl6 Arl6 subfamily. 99.9 1.7E-21 3.6E-26 124.5 11.7 95 19-119 1-96 (162)
63 cd01864 Rab19 Rab19 subfamily. 99.9 2.4E-21 5.3E-26 124.6 12.2 98 16-119 2-103 (165)
64 cd04124 RabL2 RabL2 subfamily. 99.9 2.2E-21 4.7E-26 124.6 11.9 96 18-119 1-100 (161)
65 cd04115 Rab33B_Rab33A Rab33B/R 99.9 2.3E-21 5.1E-26 125.4 12.1 97 17-119 2-103 (170)
66 cd04126 Rab20 Rab20 subfamily. 99.9 1.7E-21 3.7E-26 131.2 11.7 95 18-119 1-95 (220)
67 cd01866 Rab2 Rab2 subfamily. 99.9 2.8E-21 6.1E-26 124.8 12.3 97 17-119 4-104 (168)
68 cd04111 Rab39 Rab39 subfamily. 99.9 2E-21 4.4E-26 130.1 11.9 97 17-119 2-103 (211)
69 cd04125 RabA_like RabA-like su 99.9 2.8E-21 6.2E-26 126.9 12.1 96 18-119 1-100 (188)
70 cd04106 Rab23_lke Rab23-like s 99.9 2.8E-21 6.1E-26 123.6 11.3 95 18-118 1-101 (162)
71 cd04144 Ras2 Ras2 subfamily. 99.9 2.7E-21 5.8E-26 127.4 11.3 94 19-118 1-97 (190)
72 cd00879 Sar1 Sar1 subfamily. 99.9 8.2E-21 1.8E-25 124.7 13.6 112 1-119 2-114 (190)
73 PLN03110 Rab GTPase; Provision 99.9 5.1E-21 1.1E-25 128.5 12.8 98 16-119 11-112 (216)
74 cd01868 Rab11_like Rab11-like. 99.9 4.9E-21 1.1E-25 123.0 12.1 97 17-119 3-103 (165)
75 cd04145 M_R_Ras_like M-Ras/R-R 99.9 7.9E-21 1.7E-25 121.7 12.8 97 17-119 2-101 (164)
76 KOG0093 GTPase Rab3, small G p 99.9 2.1E-21 4.6E-26 121.0 9.6 96 17-118 21-120 (193)
77 cd04160 Arfrp1 Arfrp1 subfamil 99.9 5.5E-21 1.2E-25 122.9 12.0 101 19-119 1-101 (167)
78 cd04134 Rho3 Rho3 subfamily. 99.9 2.2E-21 4.8E-26 127.7 10.3 96 18-119 1-100 (189)
79 cd01861 Rab6 Rab6 subfamily. 99.9 6.2E-21 1.3E-25 121.9 12.0 96 18-119 1-100 (161)
80 cd04143 Rhes_like Rhes_like su 99.9 4.5E-21 9.8E-26 131.1 11.9 96 18-119 1-99 (247)
81 KOG0394 Ras-related GTPase [Ge 99.9 3.6E-22 7.8E-27 128.3 6.0 100 14-119 6-109 (210)
82 cd04103 Centaurin_gamma Centau 99.9 6.8E-21 1.5E-25 122.3 11.8 91 18-119 1-93 (158)
83 cd04101 RabL4 RabL4 (Rab-like4 99.9 5.6E-21 1.2E-25 122.5 11.3 98 18-119 1-103 (164)
84 cd04113 Rab4 Rab4 subfamily. 99.9 9.3E-21 2E-25 121.2 12.2 95 18-118 1-99 (161)
85 cd04132 Rho4_like Rho4-like su 99.9 7.3E-21 1.6E-25 124.6 11.9 95 18-118 1-100 (187)
86 cd01860 Rab5_related Rab5-rela 99.9 1E-20 2.2E-25 121.1 12.2 97 17-119 1-101 (163)
87 smart00173 RAS Ras subfamily o 99.9 9.2E-21 2E-25 121.5 12.0 96 18-119 1-99 (164)
88 cd04140 ARHI_like ARHI subfami 99.9 1.3E-20 2.8E-25 121.3 12.3 95 18-118 2-99 (165)
89 cd01892 Miro2 Miro2 subfamily. 99.9 9.6E-21 2.1E-25 122.7 11.7 97 15-117 2-103 (169)
90 cd04118 Rab24 Rab24 subfamily. 99.9 1E-20 2.2E-25 124.6 12.0 96 18-119 1-101 (193)
91 cd04112 Rab26 Rab26 subfamily. 99.9 1.1E-20 2.3E-25 124.6 11.8 96 18-119 1-101 (191)
92 smart00175 RAB Rab subfamily o 99.9 1.5E-20 3.3E-25 120.2 11.9 96 18-119 1-100 (164)
93 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 2.1E-20 4.5E-25 122.5 12.1 97 16-119 2-103 (183)
94 cd00878 Arf_Arl Arf (ADP-ribos 99.9 2.2E-20 4.8E-25 119.2 11.8 94 19-119 1-94 (158)
95 cd04177 RSR1 RSR1 subgroup. R 99.8 2.9E-20 6.3E-25 120.0 11.8 96 17-118 1-99 (168)
96 PLN03108 Rab family protein; P 99.8 4.1E-20 8.8E-25 123.6 12.4 97 16-118 5-105 (210)
97 cd04156 ARLTS1 ARLTS1 subfamil 99.8 3.6E-20 7.7E-25 118.3 11.6 95 19-120 1-96 (160)
98 smart00176 RAN Ran (Ras-relate 99.8 1.4E-20 3.1E-25 125.1 9.9 91 23-119 1-95 (200)
99 cd01863 Rab18 Rab18 subfamily. 99.8 4.4E-20 9.6E-25 118.0 11.6 96 18-119 1-100 (161)
100 smart00174 RHO Rho (Ras homolo 99.8 2.3E-20 4.9E-25 120.8 10.3 94 20-119 1-98 (174)
101 cd04130 Wrch_1 Wrch-1 subfamil 99.8 2.6E-20 5.7E-25 120.8 10.4 95 18-118 1-99 (173)
102 cd01862 Rab7 Rab7 subfamily. 99.8 5.9E-20 1.3E-24 118.4 11.9 95 18-118 1-99 (172)
103 cd04159 Arl10_like Arl10-like 99.8 6.3E-20 1.4E-24 116.2 11.8 95 19-119 1-95 (159)
104 cd04151 Arl1 Arl1 subfamily. 99.8 5.6E-20 1.2E-24 117.5 11.5 94 19-119 1-94 (158)
105 KOG0075 GTP-binding ADP-ribosy 99.8 8.3E-21 1.8E-25 118.3 6.6 111 4-120 4-117 (186)
106 KOG0074 GTP-binding ADP-ribosy 99.8 1.2E-19 2.7E-24 112.5 11.2 101 13-120 13-114 (185)
107 cd04142 RRP22 RRP22 subfamily. 99.8 6.3E-20 1.4E-24 121.8 10.3 96 18-119 1-108 (198)
108 cd00154 Rab Rab family. Rab G 99.8 1.2E-19 2.6E-24 114.7 11.2 96 18-119 1-100 (159)
109 PTZ00132 GTP-binding nuclear p 99.8 1.9E-19 4.2E-24 120.6 12.1 98 15-118 7-108 (215)
110 cd04146 RERG_RasL11_like RERG/ 99.8 1.3E-19 2.7E-24 116.6 10.4 94 19-118 1-98 (165)
111 cd04123 Rab21 Rab21 subfamily. 99.8 3.1E-19 6.7E-24 113.7 12.1 95 18-118 1-99 (162)
112 cd01870 RhoA_like RhoA-like su 99.8 1.3E-19 2.8E-24 117.4 10.3 95 18-118 2-100 (175)
113 cd04147 Ras_dva Ras-dva subfam 99.8 2.4E-19 5.3E-24 118.8 11.4 95 19-119 1-98 (198)
114 cd04114 Rab30 Rab30 subfamily. 99.8 5.8E-19 1.3E-23 113.6 12.9 96 16-117 6-105 (169)
115 PLN03118 Rab family protein; P 99.8 4.8E-19 1E-23 118.4 12.7 94 15-115 12-110 (211)
116 cd04155 Arl3 Arl3 subfamily. 99.8 9E-19 2E-23 113.2 13.4 98 14-118 11-108 (173)
117 cd01893 Miro1 Miro1 subfamily. 99.8 5.4E-19 1.2E-23 113.9 12.0 95 18-118 1-98 (166)
118 cd04135 Tc10 TC10 subfamily. 99.8 2.6E-19 5.6E-24 115.8 10.3 95 18-118 1-99 (174)
119 PF08477 Miro: Miro-like prote 99.8 1.2E-19 2.6E-24 110.9 8.0 89 19-113 1-95 (119)
120 cd01873 RhoBTB RhoBTB subfamil 99.8 5.5E-19 1.2E-23 117.1 11.2 99 17-118 2-115 (195)
121 cd04148 RGK RGK subfamily. Th 99.8 7.1E-19 1.5E-23 118.5 11.9 94 18-119 1-100 (221)
122 cd04139 RalA_RalB RalA/RalB su 99.8 9.6E-19 2.1E-23 111.7 11.4 96 18-119 1-99 (164)
123 cd00876 Ras Ras family. The R 99.8 2.1E-18 4.5E-23 109.7 11.4 95 19-119 1-98 (160)
124 cd04137 RheB Rheb (Ras Homolog 99.8 2.3E-18 4.9E-23 112.1 11.7 96 18-119 2-100 (180)
125 KOG0072 GTP-binding ADP-ribosy 99.8 1.6E-19 3.4E-24 112.2 5.3 114 1-121 1-115 (182)
126 cd00157 Rho Rho (Ras homology) 99.8 2.2E-18 4.7E-23 111.0 10.8 95 18-118 1-99 (171)
127 KOG0395 Ras-related GTPase [Ge 99.8 9E-19 1.9E-23 116.0 9.2 98 16-119 2-102 (196)
128 KOG0393 Ras-related small GTPa 99.8 7.9E-20 1.7E-24 119.9 3.7 99 16-120 3-106 (198)
129 KOG0088 GTPase Rab21, small G 99.8 8E-20 1.7E-24 115.3 3.1 97 16-118 12-112 (218)
130 COG1100 GTPase SAR1 and relate 99.8 3.6E-18 7.8E-23 114.3 10.6 98 16-119 4-106 (219)
131 KOG0097 GTPase Rab14, small G 99.8 3.9E-18 8.4E-23 106.1 9.3 96 17-118 11-110 (215)
132 KOG0081 GTPase Rab27, small G 99.8 6.7E-20 1.5E-24 115.7 1.2 98 17-120 9-119 (219)
133 cd04129 Rho2 Rho2 subfamily. 99.8 1E-17 2.2E-22 110.0 10.7 96 18-119 2-101 (187)
134 cd04105 SR_beta Signal recogni 99.8 1.3E-17 2.9E-22 111.0 11.2 94 19-119 2-101 (203)
135 KOG0083 GTPase Rab26/Rab37, sm 99.7 1.4E-18 3.1E-23 107.0 2.8 92 21-118 1-97 (192)
136 KOG4252 GTP-binding protein [S 99.7 2.2E-18 4.7E-23 110.9 1.8 99 16-120 19-121 (246)
137 cd01898 Obg Obg subfamily. Th 99.7 1E-15 2.2E-20 98.4 11.3 96 19-118 2-106 (170)
138 TIGR00231 small_GTP small GTP- 99.7 1.5E-15 3.3E-20 95.5 11.6 95 17-117 1-101 (161)
139 cd04171 SelB SelB subfamily. 99.7 1E-15 2.2E-20 97.7 10.5 82 19-103 2-86 (164)
140 cd01890 LepA LepA subfamily. 99.6 5.4E-15 1.2E-19 96.0 11.1 96 19-114 2-113 (179)
141 cd01878 HflX HflX subfamily. 99.6 9.1E-15 2E-19 97.1 11.3 94 16-114 40-143 (204)
142 cd01897 NOG NOG1 is a nucleola 99.6 1.4E-14 3E-19 93.1 11.6 94 19-118 2-108 (168)
143 cd01891 TypA_BipA TypA (tyrosi 99.6 1.5E-14 3.2E-19 95.6 12.0 87 18-104 3-101 (194)
144 TIGR00450 mnmE_trmE_thdF tRNA 99.6 1.6E-14 3.6E-19 105.9 12.9 97 15-117 201-306 (442)
145 TIGR02528 EutP ethanolamine ut 99.6 2.4E-15 5.2E-20 94.4 7.0 78 19-114 2-84 (142)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.8E-14 3.8E-19 92.4 10.5 80 19-104 2-86 (168)
147 PRK12299 obgE GTPase CgtA; Rev 99.6 2.7E-14 5.8E-19 101.5 12.3 98 17-118 158-263 (335)
148 TIGR03156 GTP_HflX GTP-binding 99.6 3.2E-14 7E-19 101.7 12.3 90 17-113 189-290 (351)
149 KOG1673 Ras GTPases [General f 99.6 1.3E-15 2.9E-20 96.0 4.3 98 16-119 19-120 (205)
150 cd01881 Obg_like The Obg-like 99.6 1.5E-14 3.2E-19 93.4 9.1 93 22-118 1-107 (176)
151 PF09439 SRPRB: Signal recogni 99.6 4.1E-15 8.8E-20 97.1 6.3 94 18-119 4-104 (181)
152 KOG0077 Vesicle coat complex C 99.6 8.2E-15 1.8E-19 93.2 7.1 97 16-119 19-115 (193)
153 cd00882 Ras_like_GTPase Ras-li 99.6 1.8E-14 4E-19 89.5 8.4 85 22-113 1-90 (157)
154 PRK15494 era GTPase Era; Provi 99.6 4.9E-14 1.1E-18 100.4 11.4 92 15-111 50-149 (339)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.6 1.3E-13 2.8E-18 87.2 11.9 93 18-113 2-102 (157)
156 PRK05291 trmE tRNA modificatio 99.6 9.3E-14 2E-18 102.2 12.0 97 15-114 213-317 (449)
157 TIGR02729 Obg_CgtA Obg family 99.6 1.4E-13 3.1E-18 97.7 12.5 97 17-117 157-264 (329)
158 cd01896 DRG The developmentall 99.5 1.6E-13 3.5E-18 93.2 12.0 93 19-115 2-102 (233)
159 PRK03003 GTP-binding protein D 99.5 2.1E-13 4.6E-18 100.9 12.8 91 15-108 36-134 (472)
160 cd00881 GTP_translation_factor 99.5 2.5E-13 5.5E-18 88.4 11.5 90 19-108 1-102 (189)
161 PRK00093 GTP-binding protein D 99.5 3.2E-13 6.9E-18 99.0 13.0 96 18-116 2-107 (435)
162 PF01926 MMR_HSR1: 50S ribosom 99.5 8.7E-13 1.9E-17 80.4 12.5 83 19-104 1-92 (116)
163 cd01879 FeoB Ferrous iron tran 99.5 1.6E-13 3.4E-18 87.1 9.5 81 22-108 1-91 (158)
164 PF04670 Gtr1_RagA: Gtr1/RagA 99.5 1.3E-13 2.8E-18 93.4 9.4 84 19-105 1-90 (232)
165 TIGR00436 era GTP-binding prot 99.5 4.7E-13 1E-17 92.7 12.2 87 19-108 2-96 (270)
166 PRK04213 GTP-binding protein; 99.5 4.1E-14 8.8E-19 93.7 6.6 80 16-103 8-102 (201)
167 TIGR03598 GTPase_YsxC ribosome 99.5 3.3E-13 7.2E-18 88.0 10.8 91 13-110 14-119 (179)
168 COG2229 Predicted GTPase [Gene 99.5 3.2E-13 6.9E-18 87.2 10.1 98 14-112 7-111 (187)
169 cd01889 SelB_euk SelB subfamil 99.5 5.1E-13 1.1E-17 88.0 10.9 91 18-108 1-108 (192)
170 PRK03003 GTP-binding protein D 99.5 6.7E-13 1.4E-17 98.3 12.5 93 16-111 210-313 (472)
171 cd04168 TetM_like Tet(M)-like 99.5 8.9E-13 1.9E-17 89.8 12.0 88 19-106 1-102 (237)
172 PRK00454 engB GTP-binding prot 99.5 9.1E-13 2E-17 86.7 11.7 88 13-107 20-122 (196)
173 cd01894 EngA1 EngA1 subfamily. 99.5 5.3E-13 1.1E-17 84.4 9.6 83 21-107 1-92 (157)
174 PTZ00099 rab6; Provisional 99.5 2.6E-13 5.7E-18 88.6 8.3 74 46-119 3-80 (176)
175 cd01895 EngA2 EngA2 subfamily. 99.5 1.7E-12 3.8E-17 83.1 12.0 91 17-110 2-103 (174)
176 PRK12297 obgE GTPase CgtA; Rev 99.5 1.3E-12 2.9E-17 95.3 12.5 96 18-117 159-265 (424)
177 KOG3883 Ras family small GTPas 99.5 1.4E-12 2.9E-17 82.3 10.4 97 16-116 8-112 (198)
178 TIGR03594 GTPase_EngA ribosome 99.5 1.7E-12 3.7E-17 94.9 12.4 95 19-116 1-105 (429)
179 cd04163 Era Era subfamily. Er 99.5 1.4E-12 3.1E-17 82.8 10.5 86 16-104 2-95 (168)
180 cd04169 RF3 RF3 subfamily. Pe 99.5 3.1E-12 6.7E-17 88.6 12.7 88 18-105 3-108 (267)
181 PRK12296 obgE GTPase CgtA; Rev 99.5 2E-12 4.3E-17 95.8 12.0 84 16-103 158-248 (500)
182 TIGR01393 lepA GTP-binding pro 99.4 2.8E-12 6E-17 97.2 12.9 98 17-114 3-116 (595)
183 PRK11058 GTPase HflX; Provisio 99.4 2.2E-12 4.8E-17 94.3 12.0 96 18-117 198-305 (426)
184 cd04170 EF-G_bact Elongation f 99.4 2.8E-12 6.1E-17 88.7 11.9 90 19-108 1-104 (268)
185 PF02421 FeoB_N: Ferrous iron 99.4 1.3E-12 2.9E-17 83.5 9.5 84 18-105 1-92 (156)
186 cd04166 CysN_ATPS CysN_ATPS su 99.4 1.7E-12 3.8E-17 86.7 10.2 86 19-104 1-113 (208)
187 cd04167 Snu114p Snu114p subfam 99.4 4.2E-12 9.2E-17 85.1 11.8 90 19-108 2-111 (213)
188 PRK12298 obgE GTPase CgtA; Rev 99.4 4.9E-12 1.1E-16 91.7 12.1 97 18-118 160-267 (390)
189 TIGR03594 GTPase_EngA ribosome 99.4 4.1E-12 8.9E-17 92.9 11.5 91 17-110 172-273 (429)
190 cd01888 eIF2_gamma eIF2-gamma 99.4 3.8E-12 8.2E-17 84.8 9.8 85 18-104 1-119 (203)
191 PRK13351 elongation factor G; 99.4 6.3E-12 1.4E-16 96.8 12.4 99 15-113 6-118 (687)
192 PRK12317 elongation factor 1-a 99.4 2.6E-12 5.6E-17 94.1 9.7 90 14-103 3-119 (425)
193 TIGR00487 IF-2 translation ini 99.4 5.9E-12 1.3E-16 95.2 11.9 82 16-103 86-170 (587)
194 KOG0096 GTPase Ran/TC4/GSP1 (n 99.4 6.9E-13 1.5E-17 86.1 5.7 97 16-118 9-109 (216)
195 CHL00189 infB translation init 99.4 8.4E-12 1.8E-16 96.1 12.3 90 16-111 243-341 (742)
196 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 8.3E-12 1.8E-16 82.6 10.7 99 18-118 1-111 (196)
197 TIGR00491 aIF-2 translation in 99.4 5.1E-12 1.1E-16 95.5 10.8 91 19-111 6-115 (590)
198 KOG0090 Signal recognition par 99.4 1.4E-12 3.1E-17 86.2 6.7 96 17-119 38-137 (238)
199 PRK05306 infB translation init 99.4 8.2E-12 1.8E-16 96.8 11.9 83 15-103 288-372 (787)
200 PF00009 GTP_EFTU: Elongation 99.4 1.1E-11 2.4E-16 81.5 10.7 91 15-105 1-107 (188)
201 cd01886 EF-G Elongation factor 99.4 2E-11 4.4E-16 84.6 12.2 86 19-104 1-100 (270)
202 cd01885 EF2 EF2 (for archaea a 99.4 2.3E-11 5E-16 82.1 11.9 91 19-109 2-114 (222)
203 PRK09518 bifunctional cytidyla 99.4 1.4E-11 3.1E-16 95.2 12.1 91 17-111 450-552 (712)
204 PRK15467 ethanolamine utilizat 99.4 5.4E-12 1.2E-16 81.0 8.2 74 19-107 3-80 (158)
205 smart00275 G_alpha G protein a 99.4 1.6E-11 3.5E-16 87.6 11.3 70 52-121 168-247 (342)
206 PRK05433 GTP-binding protein L 99.4 2E-11 4.4E-16 92.7 12.3 98 17-114 7-120 (600)
207 TIGR00483 EF-1_alpha translati 99.4 5.9E-12 1.3E-16 92.3 9.0 93 14-106 4-123 (426)
208 PRK00089 era GTPase Era; Revie 99.3 1.8E-11 3.9E-16 85.5 11.0 84 16-103 4-96 (292)
209 PRK10218 GTP-binding protein; 99.3 2.3E-11 5E-16 92.3 12.3 89 16-104 4-104 (607)
210 TIGR00475 selB selenocysteine- 99.3 9E-12 2E-16 94.3 10.1 90 18-110 1-95 (581)
211 TIGR01394 TypA_BipA GTP-bindin 99.3 2.1E-11 4.6E-16 92.4 12.0 98 19-117 3-112 (594)
212 PF04548 AIG1: AIG1 family; I 99.3 3E-11 6.6E-16 81.0 11.4 100 18-119 1-112 (212)
213 cd00066 G-alpha G protein alph 99.3 2.2E-11 4.8E-16 86.2 11.1 68 53-120 146-223 (317)
214 KOG1707 Predicted Ras related/ 99.3 9E-12 1.9E-16 92.3 9.1 99 15-119 7-108 (625)
215 PRK04004 translation initiatio 99.3 2E-11 4.3E-16 92.4 10.2 94 16-111 5-117 (586)
216 PRK09518 bifunctional cytidyla 99.3 5.4E-11 1.2E-15 92.0 12.7 82 16-104 274-367 (712)
217 cd01899 Ygr210 Ygr210 subfamil 99.3 6.1E-11 1.3E-15 83.9 11.9 84 20-103 1-111 (318)
218 PRK00093 GTP-binding protein D 99.3 5E-11 1.1E-15 87.5 12.0 91 16-110 172-274 (435)
219 cd01884 EF_Tu EF-Tu subfamily. 99.3 5.2E-11 1.1E-15 79.0 10.9 88 17-104 2-101 (195)
220 COG1084 Predicted GTPase [Gene 99.3 5E-11 1.1E-15 83.4 11.1 100 16-119 167-277 (346)
221 PRK09602 translation-associate 99.3 4E-11 8.6E-16 87.1 11.0 86 17-102 1-113 (396)
222 cd00880 Era_like Era (E. coli 99.3 3.8E-11 8.3E-16 75.3 9.3 87 22-111 1-95 (163)
223 COG1163 DRG Predicted GTPase [ 99.3 1.8E-11 3.8E-16 85.6 7.8 96 17-116 63-166 (365)
224 COG1159 Era GTPase [General fu 99.3 2.8E-11 6E-16 83.7 8.7 86 16-104 5-98 (298)
225 cd01876 YihA_EngB The YihA (En 99.3 6.6E-11 1.4E-15 75.3 9.9 91 19-116 1-108 (170)
226 PRK09554 feoB ferrous iron tra 99.3 8.6E-11 1.9E-15 91.3 11.7 87 16-106 2-100 (772)
227 cd01853 Toc34_like Toc34-like 99.3 1.8E-10 4E-15 79.0 12.0 86 15-103 29-126 (249)
228 COG0486 ThdF Predicted GTPase 99.3 9.6E-11 2.1E-15 85.2 10.9 83 15-104 215-309 (454)
229 PRK00741 prfC peptide chain re 99.3 1.1E-10 2.4E-15 87.5 11.3 90 16-105 9-116 (526)
230 cd01883 EF1_alpha Eukaryotic e 99.3 1E-10 2.3E-15 78.7 10.0 86 19-104 1-113 (219)
231 KOG4423 GTP-binding protein-li 99.2 3.1E-14 6.6E-19 92.2 -7.0 96 17-118 25-125 (229)
232 TIGR00991 3a0901s02IAP34 GTP-b 99.2 5.8E-10 1.3E-14 78.3 13.4 84 16-102 37-129 (313)
233 TIGR03680 eif2g_arch translati 99.2 6.8E-11 1.5E-15 86.2 9.2 88 15-103 2-115 (406)
234 KOG1423 Ras-like GTPase ERA [C 99.2 7.5E-11 1.6E-15 82.0 8.9 87 15-104 70-168 (379)
235 TIGR00484 EF-G translation elo 99.2 2.3E-10 5.1E-15 88.3 12.4 93 16-108 9-115 (689)
236 PTZ00258 GTP-binding protein; 99.2 3.2E-10 6.9E-15 82.0 12.0 84 15-102 19-126 (390)
237 TIGR00503 prfC peptide chain r 99.2 3.1E-10 6.8E-15 85.1 12.3 89 16-104 10-116 (527)
238 COG1160 Predicted GTPases [Gen 99.2 1.6E-10 3.4E-15 83.9 10.1 83 18-103 4-95 (444)
239 cd04104 p47_IIGP_like p47 (47- 99.2 1.1E-10 2.5E-15 77.3 8.0 78 17-100 1-89 (197)
240 PRK12736 elongation factor Tu; 99.2 3.1E-10 6.8E-15 82.5 10.9 91 14-104 9-111 (394)
241 TIGR00485 EF-Tu translation el 99.2 2.8E-10 6E-15 82.8 10.4 90 14-103 9-110 (394)
242 KOG1489 Predicted GTP-binding 99.2 1.9E-10 4.2E-15 80.3 9.1 97 16-116 195-302 (366)
243 PRK04000 translation initiatio 99.2 1.1E-10 2.4E-15 85.3 8.3 91 13-104 5-121 (411)
244 COG3596 Predicted GTPase [Gene 99.2 8.4E-11 1.8E-15 80.7 7.1 88 14-105 36-131 (296)
245 PRK12735 elongation factor Tu; 99.2 3.1E-10 6.8E-15 82.6 10.6 91 14-104 9-111 (396)
246 cd01900 YchF YchF subfamily. 99.2 2.1E-10 4.5E-15 79.6 9.2 79 20-102 1-103 (274)
247 PF10662 PduV-EutP: Ethanolami 99.2 2E-10 4.4E-15 72.3 8.2 72 18-105 2-77 (143)
248 CHL00071 tufA elongation facto 99.2 6.1E-10 1.3E-14 81.4 11.9 91 14-104 9-111 (409)
249 PRK05124 cysN sulfate adenylyl 99.2 2.5E-10 5.4E-15 84.7 9.9 91 14-104 24-143 (474)
250 PRK09601 GTP-binding protein Y 99.2 4.6E-10 1E-14 80.5 10.5 81 18-102 3-107 (364)
251 TIGR02034 CysN sulfate adenyly 99.2 4.2E-10 9.1E-15 82.1 10.3 87 18-104 1-116 (406)
252 PLN03126 Elongation factor Tu; 99.2 6.7E-10 1.5E-14 82.4 11.3 91 14-104 78-180 (478)
253 PRK05506 bifunctional sulfate 99.1 6.6E-10 1.4E-14 85.1 11.2 97 8-104 15-140 (632)
254 PRK12739 elongation factor G; 99.1 1.1E-09 2.5E-14 84.5 12.4 92 15-106 6-111 (691)
255 cd01850 CDC_Septin CDC/Septin. 99.1 5E-10 1.1E-14 77.9 9.3 61 17-77 4-72 (276)
256 TIGR00490 aEF-2 translation el 99.1 5.4E-10 1.2E-14 86.6 9.8 89 16-104 18-122 (720)
257 PRK00049 elongation factor Tu; 99.1 1.1E-09 2.4E-14 79.7 10.8 92 13-104 8-111 (396)
258 PRK10512 selenocysteinyl-tRNA- 99.1 1.2E-09 2.5E-14 83.4 10.6 89 19-110 2-96 (614)
259 PLN03127 Elongation factor Tu; 99.1 3.4E-09 7.3E-14 78.3 12.1 91 14-104 58-160 (447)
260 TIGR00437 feoB ferrous iron tr 99.1 1.1E-09 2.3E-14 83.3 9.5 77 24-106 1-87 (591)
261 PTZ00141 elongation factor 1- 99.1 1.3E-09 2.8E-14 80.4 9.2 91 14-104 4-121 (446)
262 PRK12740 elongation factor G; 99.0 3.3E-09 7.1E-14 81.7 11.1 88 23-110 1-102 (668)
263 PRK00007 elongation factor G; 99.0 5.4E-09 1.2E-13 80.8 12.2 91 15-105 8-112 (693)
264 KOG1191 Mitochondrial GTPase [ 99.0 3.5E-09 7.5E-14 77.6 10.4 86 14-106 265-365 (531)
265 PLN00043 elongation factor 1-a 99.0 1.7E-09 3.7E-14 79.8 9.0 90 14-103 4-120 (447)
266 TIGR00993 3a0901s04IAP86 chlor 99.0 7.9E-09 1.7E-13 78.7 12.2 84 17-103 118-213 (763)
267 COG0218 Predicted GTPase [Gene 99.0 1E-08 2.2E-13 67.6 11.2 87 11-104 18-119 (200)
268 smart00010 small_GTPase Small 99.0 9.4E-10 2E-14 67.0 5.6 34 18-57 1-35 (124)
269 COG0012 Predicted GTPase, prob 99.0 4.5E-09 9.8E-14 75.0 9.3 84 17-104 2-110 (372)
270 cd04165 GTPBP1_like GTPBP1-lik 99.0 6.8E-09 1.5E-13 70.3 9.8 86 19-104 1-122 (224)
271 COG1160 Predicted GTPases [Gen 99.0 4.6E-09 1E-13 76.4 9.2 91 17-110 178-279 (444)
272 COG0536 Obg Predicted GTPase [ 99.0 8.3E-09 1.8E-13 72.8 9.7 84 18-105 160-251 (369)
273 PF05049 IIGP: Interferon-indu 99.0 5.2E-09 1.1E-13 75.3 8.6 84 15-100 33-123 (376)
274 TIGR00092 GTP-binding protein 98.9 1.6E-08 3.5E-13 72.7 10.2 83 18-103 3-109 (368)
275 COG0370 FeoB Fe2+ transport sy 98.9 2E-08 4.4E-13 76.1 10.9 87 16-106 2-96 (653)
276 PRK07560 elongation factor EF- 98.9 1.8E-08 4E-13 78.4 10.9 89 16-104 19-123 (731)
277 KOG0082 G-protein alpha subuni 98.9 3.1E-08 6.7E-13 70.6 10.4 70 52-121 179-258 (354)
278 PLN00116 translation elongatio 98.9 4E-08 8.7E-13 77.5 11.6 91 15-105 17-135 (843)
279 PF00350 Dynamin_N: Dynamin fa 98.9 6.2E-08 1.3E-12 62.2 10.2 47 69-115 102-152 (168)
280 PTZ00416 elongation factor 2; 98.8 5.1E-08 1.1E-12 76.9 11.0 89 16-104 18-128 (836)
281 KOG1491 Predicted GTP-binding 98.8 2.4E-08 5.1E-13 70.6 8.0 86 15-104 18-127 (391)
282 cd01882 BMS1 Bms1. Bms1 is an 98.8 1.2E-07 2.6E-12 64.2 11.3 81 15-105 37-117 (225)
283 PF05783 DLIC: Dynein light in 98.8 5.2E-08 1.1E-12 72.2 9.9 93 16-117 24-127 (472)
284 KOG3886 GTP-binding protein [S 98.8 8.4E-09 1.8E-13 69.5 4.6 101 17-120 4-113 (295)
285 COG2262 HflX GTPases [General 98.8 9.2E-08 2E-12 69.0 9.4 90 16-110 191-290 (411)
286 KOG1486 GTP-binding protein DR 98.7 2.7E-08 5.9E-13 68.0 6.0 93 17-115 62-164 (364)
287 COG5256 TEF1 Translation elong 98.7 4.9E-08 1.1E-12 70.5 7.5 91 14-104 4-121 (428)
288 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.8E-08 1.3E-12 61.1 6.7 53 18-78 84-138 (141)
289 cd01858 NGP_1 NGP-1. Autoanti 98.7 1.7E-07 3.8E-12 59.9 8.1 54 16-77 101-156 (157)
290 KOG3905 Dynein light intermedi 98.6 3.1E-07 6.8E-12 64.9 9.0 95 16-119 51-156 (473)
291 cd01859 MJ1464 MJ1464. This f 98.6 3.5E-07 7.5E-12 58.3 8.5 55 16-77 100-155 (156)
292 COG0480 FusA Translation elong 98.6 5.1E-07 1.1E-11 69.8 10.7 96 15-110 8-118 (697)
293 KOG0705 GTPase-activating prot 98.6 7.2E-08 1.6E-12 71.9 5.3 98 9-117 22-121 (749)
294 cd04178 Nucleostemin_like Nucl 98.6 2.3E-07 5E-12 60.4 7.1 54 16-77 116-171 (172)
295 cd01851 GBP Guanylate-binding 98.6 1.3E-06 2.8E-11 59.2 10.2 88 16-104 6-104 (224)
296 cd01856 YlqF YlqF. Proteins o 98.6 3E-07 6.6E-12 59.6 6.9 55 16-78 114-170 (171)
297 KOG1707 Predicted Ras related/ 98.6 3.9E-07 8.4E-12 68.3 8.0 94 15-116 423-520 (625)
298 cd01855 YqeH YqeH. YqeH is an 98.5 5E-07 1.1E-11 59.5 7.5 24 16-39 126-149 (190)
299 PF00735 Septin: Septin; Inte 98.5 2.9E-07 6.3E-12 64.3 6.3 61 17-77 4-72 (281)
300 PRK09563 rbgA GTPase YlqF; Rev 98.5 9E-07 1.9E-11 62.0 7.6 55 16-78 120-176 (287)
301 TIGR03596 GTPase_YlqF ribosome 98.4 9.9E-07 2.1E-11 61.5 6.8 57 16-78 117-173 (276)
302 TIGR00157 ribosome small subun 98.4 1.5E-06 3.3E-11 59.6 7.6 66 5-77 111-180 (245)
303 PTZ00327 eukaryotic translatio 98.4 2.9E-06 6.3E-11 63.0 8.8 93 12-104 29-153 (460)
304 cd01849 YlqF_related_GTPase Yl 98.4 2.1E-06 4.5E-11 54.8 6.6 57 15-77 98-154 (155)
305 COG0532 InfB Translation initi 98.4 2.9E-06 6.2E-11 63.1 8.1 89 19-112 7-102 (509)
306 KOG0410 Predicted GTP binding 98.3 3.4E-06 7.3E-11 59.7 7.8 84 18-106 179-272 (410)
307 PRK12288 GTPase RsgA; Reviewed 98.3 3.2E-06 6.8E-11 60.8 7.3 32 5-39 196-227 (347)
308 PRK12289 GTPase RsgA; Reviewed 98.3 2.8E-06 6.1E-11 61.1 6.8 31 6-39 164-194 (352)
309 COG1161 Predicted GTPases [Gen 98.3 3.2E-06 6.9E-11 60.2 7.0 55 15-77 130-186 (322)
310 PF03193 DUF258: Protein of un 98.3 1E-06 2.2E-11 56.7 4.0 22 18-39 36-57 (161)
311 COG4917 EutP Ethanolamine util 98.3 2.2E-06 4.7E-11 52.8 5.0 73 18-105 2-78 (148)
312 smart00053 DYNc Dynamin, GTPas 98.3 2E-05 4.4E-10 53.9 10.1 24 16-39 25-48 (240)
313 PF03029 ATP_bind_1: Conserved 98.3 1.6E-06 3.5E-11 59.2 4.8 19 22-40 1-19 (238)
314 TIGR02836 spore_IV_A stage IV 98.3 1.7E-05 3.6E-10 58.2 10.0 70 8-77 6-100 (492)
315 COG1217 TypA Predicted membran 98.2 3.4E-06 7.4E-11 62.2 6.3 82 18-103 6-103 (603)
316 KOG0468 U5 snRNP-specific prot 98.2 1.6E-05 3.5E-10 61.0 9.5 96 16-111 127-240 (971)
317 COG5019 CDC3 Septin family pro 98.2 6.6E-06 1.4E-10 58.9 7.1 63 15-77 21-91 (373)
318 KOG2655 Septin family protein 98.2 6.8E-06 1.5E-10 59.0 7.0 60 16-77 20-88 (366)
319 COG1618 Predicted nucleotide k 98.2 1.1E-05 2.4E-10 51.8 7.3 25 15-39 3-27 (179)
320 KOG1547 Septin CDC10 and relat 98.2 1.5E-05 3.2E-10 54.5 7.5 61 17-77 46-113 (336)
321 COG1116 TauB ABC-type nitrate/ 98.2 7.2E-06 1.6E-10 56.0 6.0 21 19-39 31-51 (248)
322 COG4108 PrfC Peptide chain rel 98.1 6E-06 1.3E-10 60.5 5.8 88 17-104 12-117 (528)
323 KOG0462 Elongation factor-type 98.1 1.2E-05 2.7E-10 60.2 7.5 88 17-104 60-161 (650)
324 KOG1487 GTP-binding protein DR 98.1 3.5E-06 7.6E-11 58.1 4.1 87 18-110 60-155 (358)
325 cd03222 ABC_RNaseL_inhibitor T 98.1 4E-05 8.7E-10 50.2 8.7 24 16-39 24-47 (177)
326 TIGR03597 GTPase_YqeH ribosome 98.1 1.1E-05 2.4E-10 58.3 6.4 23 17-39 154-176 (360)
327 cd01854 YjeQ_engC YjeQ/EngC. 98.1 1.7E-05 3.7E-10 55.6 7.0 22 18-39 162-183 (287)
328 KOG1145 Mitochondrial translat 98.1 2.4E-05 5.3E-10 58.8 7.7 90 19-112 155-248 (683)
329 PRK13768 GTPase; Provisional 98.1 3.9E-05 8.5E-10 52.9 8.2 22 18-39 3-24 (253)
330 PRK00098 GTPase RsgA; Reviewed 98.0 2.6E-05 5.7E-10 55.0 7.2 23 17-39 164-186 (298)
331 KOG3887 Predicted small GTPase 98.0 6.4E-06 1.4E-10 56.3 3.7 84 18-104 28-114 (347)
332 KOG0461 Selenocysteine-specifi 98.0 4.3E-05 9.3E-10 54.8 7.8 89 14-104 4-106 (522)
333 PRK13796 GTPase YqeH; Provisio 98.0 3.3E-05 7.2E-10 56.0 7.2 23 17-39 160-182 (365)
334 COG1162 Predicted GTPases [Gen 98.0 1.4E-05 3.1E-10 56.0 5.1 21 19-39 166-186 (301)
335 KOG1954 Endocytosis/signaling 97.9 0.00022 4.8E-09 51.7 10.2 95 17-117 58-207 (532)
336 COG1126 GlnQ ABC-type polar am 97.9 2.3E-05 5E-10 52.7 5.0 23 17-39 28-50 (240)
337 PRK14845 translation initiatio 97.9 6E-05 1.3E-09 60.9 8.2 42 70-111 528-572 (1049)
338 KOG0458 Elongation factor 1 al 97.9 4.9E-05 1.1E-09 57.3 7.1 92 12-103 172-290 (603)
339 PRK08118 topology modulation p 97.9 1.5E-05 3.3E-10 51.6 3.3 23 18-40 2-24 (167)
340 PF13207 AAA_17: AAA domain; P 97.9 1.6E-05 3.5E-10 48.3 3.2 21 19-39 1-21 (121)
341 COG0563 Adk Adenylate kinase a 97.8 1.7E-05 3.7E-10 52.0 3.2 22 18-39 1-22 (178)
342 COG0050 TufB GTPases - transla 97.8 0.00019 4.1E-09 50.5 8.1 89 14-103 9-110 (394)
343 PRK07261 topology modulation p 97.8 2.3E-05 4.9E-10 51.0 3.3 22 18-39 1-22 (171)
344 COG0481 LepA Membrane GTPase L 97.8 6.2E-05 1.3E-09 55.9 5.8 97 18-114 10-122 (603)
345 COG5192 BMS1 GTP-binding prote 97.8 0.00016 3.5E-09 55.0 7.9 77 16-102 68-144 (1077)
346 COG4619 ABC-type uncharacteriz 97.8 7.8E-05 1.7E-09 48.6 5.5 53 18-88 30-82 (223)
347 COG1136 SalX ABC-type antimicr 97.8 6.1E-05 1.3E-09 51.1 5.0 22 18-39 32-53 (226)
348 PRK09435 membrane ATPase/prote 97.8 0.00071 1.5E-08 48.5 10.6 25 15-39 54-78 (332)
349 PF00448 SRP54: SRP54-type pro 97.7 0.00039 8.3E-09 46.3 8.6 22 18-39 2-23 (196)
350 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00044 9.5E-09 48.1 9.0 89 17-112 80-169 (264)
351 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.7 0.00043 9.4E-09 43.7 8.3 23 17-39 26-48 (144)
352 cd03216 ABC_Carb_Monos_I This 97.7 0.00021 4.5E-09 46.0 6.7 23 17-39 26-48 (163)
353 PRK06217 hypothetical protein; 97.7 4.1E-05 8.8E-10 50.2 3.4 22 18-39 2-23 (183)
354 COG1125 OpuBA ABC-type proline 97.7 6E-05 1.3E-09 52.0 4.3 21 19-39 29-49 (309)
355 KOG1144 Translation initiation 97.7 0.00018 3.9E-09 56.0 7.1 87 20-111 478-586 (1064)
356 KOG0099 G protein subunit Galp 97.7 0.0002 4.4E-09 49.6 6.7 49 55-103 189-237 (379)
357 COG3839 MalK ABC-type sugar tr 97.7 6.5E-05 1.4E-09 53.8 4.5 20 20-39 32-51 (338)
358 KOG1490 GTP-binding protein CR 97.7 8.6E-05 1.9E-09 55.4 5.2 98 16-117 167-275 (620)
359 cd02042 ParA ParA and ParB of 97.7 0.00081 1.8E-08 39.8 8.5 81 20-115 2-84 (104)
360 TIGR01425 SRP54_euk signal rec 97.7 0.0011 2.4E-08 49.0 10.7 23 17-39 100-122 (429)
361 PF13671 AAA_33: AAA domain; P 97.7 4.3E-05 9.4E-10 47.7 3.0 20 20-39 2-21 (143)
362 TIGR02868 CydC thiol reductant 97.7 8.8E-05 1.9E-09 56.0 5.1 24 16-39 360-383 (529)
363 COG3842 PotA ABC-type spermidi 97.7 9.5E-05 2.1E-09 53.2 4.9 20 20-39 34-53 (352)
364 COG2895 CysN GTPases - Sulfate 97.6 0.00012 2.6E-09 52.6 5.2 89 14-102 3-120 (431)
365 PRK06547 hypothetical protein; 97.6 0.00012 2.7E-09 47.6 4.8 35 6-40 4-38 (172)
366 PF13521 AAA_28: AAA domain; P 97.6 3.8E-05 8.3E-10 49.3 2.4 22 19-40 1-22 (163)
367 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.6 0.00013 2.8E-09 48.9 5.0 23 17-39 30-52 (218)
368 TIGR00960 3a0501s02 Type II (G 97.6 0.00013 2.8E-09 48.9 5.0 23 17-39 29-51 (216)
369 COG2274 SunT ABC-type bacterio 97.6 7E-05 1.5E-09 58.4 3.9 31 16-57 498-528 (709)
370 COG3638 ABC-type phosphate/pho 97.6 8.1E-05 1.8E-09 50.7 3.7 22 18-39 31-52 (258)
371 TIGR03797 NHPM_micro_ABC2 NHPM 97.6 0.0001 2.3E-09 57.3 4.7 24 16-39 478-501 (686)
372 cd02019 NK Nucleoside/nucleoti 97.6 8.9E-05 1.9E-09 41.0 3.1 20 20-39 2-21 (69)
373 KOG2485 Conserved ATP/GTP bind 97.6 0.00022 4.8E-09 50.3 5.7 61 15-77 141-205 (335)
374 cd03292 ABC_FtsE_transporter F 97.6 0.00018 3.9E-09 48.0 5.2 23 17-39 27-49 (214)
375 cd03225 ABC_cobalt_CbiO_domain 97.6 0.00019 4.2E-09 47.8 5.3 23 17-39 27-49 (211)
376 TIGR00235 udk uridine kinase. 97.6 0.0001 2.2E-09 49.3 3.9 27 14-40 3-29 (207)
377 TIGR01166 cbiO cobalt transpor 97.6 0.00017 3.6E-09 47.4 4.9 23 17-39 18-40 (190)
378 cd03261 ABC_Org_Solvent_Resist 97.6 0.00018 4E-09 48.8 5.2 23 17-39 26-48 (235)
379 cd03226 ABC_cobalt_CbiO_domain 97.6 0.00019 4E-09 47.8 5.1 23 17-39 26-48 (205)
380 PRK11176 lipid transporter ATP 97.6 0.00012 2.6E-09 55.9 4.6 24 16-39 368-391 (582)
381 cd03258 ABC_MetN_methionine_tr 97.6 0.0002 4.4E-09 48.4 5.3 24 16-39 30-53 (233)
382 PRK11629 lolD lipoprotein tran 97.6 0.00019 4.2E-09 48.6 5.2 23 17-39 35-57 (233)
383 cd03224 ABC_TM1139_LivF_branch 97.6 0.0002 4.2E-09 48.1 5.1 24 16-39 25-48 (222)
384 cd03263 ABC_subfamily_A The AB 97.6 0.00018 4E-09 48.2 5.0 23 17-39 28-50 (220)
385 PF00004 AAA: ATPase family as 97.6 8.8E-05 1.9E-09 45.4 3.2 20 20-39 1-20 (132)
386 PRK03839 putative kinase; Prov 97.6 8.6E-05 1.9E-09 48.4 3.3 22 19-40 2-23 (180)
387 TIGR00064 ftsY signal recognit 97.6 0.0018 3.9E-08 45.2 10.0 25 16-40 71-95 (272)
388 cd03259 ABC_Carb_Solutes_like 97.5 0.00021 4.5E-09 47.8 5.2 23 17-39 26-48 (213)
389 COG1135 AbcC ABC-type metal io 97.5 6.7E-05 1.5E-09 52.9 2.8 38 19-71 34-71 (339)
390 TIGR02211 LolD_lipo_ex lipopro 97.5 0.00023 4.9E-09 47.8 5.2 23 17-39 31-53 (221)
391 COG1120 FepC ABC-type cobalami 97.5 0.00016 3.5E-09 50.0 4.5 23 18-40 29-51 (258)
392 COG4175 ProV ABC-type proline/ 97.5 0.00015 3.3E-09 51.5 4.4 34 20-68 57-90 (386)
393 cd03266 ABC_NatA_sodium_export 97.5 0.00023 5E-09 47.7 5.3 23 17-39 31-53 (218)
394 PF00503 G-alpha: G-protein al 97.5 0.0003 6.4E-09 51.4 6.2 69 52-120 219-298 (389)
395 cd03218 ABC_YhbG The ABC trans 97.5 0.00023 5.1E-09 48.1 5.3 23 17-39 26-48 (232)
396 TIGR02315 ABC_phnC phosphonate 97.5 0.00021 4.6E-09 48.6 5.1 23 17-39 28-50 (243)
397 TIGR02673 FtsE cell division A 97.5 0.00024 5.1E-09 47.5 5.2 23 17-39 28-50 (214)
398 PRK10078 ribose 1,5-bisphospho 97.5 8.3E-05 1.8E-09 48.8 3.0 21 19-39 4-24 (186)
399 cd03262 ABC_HisP_GlnQ_permease 97.5 0.00023 4.9E-09 47.5 5.1 23 17-39 26-48 (213)
400 cd03257 ABC_NikE_OppD_transpor 97.5 0.00023 5E-09 47.9 5.2 23 17-39 31-53 (228)
401 cd00071 GMPK Guanosine monopho 97.5 9.6E-05 2.1E-09 46.4 3.1 21 20-40 2-22 (137)
402 cd03229 ABC_Class3 This class 97.5 0.00027 5.8E-09 46.1 5.3 23 17-39 26-48 (178)
403 cd03215 ABC_Carb_Monos_II This 97.5 0.00024 5.3E-09 46.4 5.1 23 17-39 26-48 (182)
404 smart00382 AAA ATPases associa 97.5 0.00011 2.4E-09 44.7 3.3 22 18-39 3-24 (148)
405 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00063 1.4E-08 42.6 6.6 24 17-40 22-45 (133)
406 COG1134 TagH ABC-type polysacc 97.5 0.00018 3.9E-09 49.1 4.5 31 17-58 53-83 (249)
407 PRK10908 cell division protein 97.5 0.00026 5.7E-09 47.6 5.3 24 16-39 27-50 (222)
408 TIGR02322 phosphon_PhnN phosph 97.5 9.8E-05 2.1E-09 48.0 3.1 22 19-40 3-24 (179)
409 COG1124 DppF ABC-type dipeptid 97.5 0.00077 1.7E-08 46.1 7.4 23 17-39 33-55 (252)
410 PRK14530 adenylate kinase; Pro 97.5 0.0001 2.3E-09 49.4 3.3 23 18-40 4-26 (215)
411 PF00005 ABC_tran: ABC transpo 97.5 9.1E-05 2E-09 45.9 2.8 23 17-39 11-33 (137)
412 COG4559 ABC-type hemin transpo 97.5 0.00013 2.9E-09 49.2 3.7 22 18-39 28-49 (259)
413 TIGR03796 NHPM_micro_ABC1 NHPM 97.5 0.00011 2.3E-09 57.4 3.7 24 16-39 504-527 (710)
414 PRK13851 type IV secretion sys 97.5 0.001 2.2E-08 48.0 8.4 25 16-40 161-185 (344)
415 PRK13541 cytochrome c biogenes 97.5 0.00024 5.2E-09 46.9 4.9 23 17-39 26-48 (195)
416 TIGR03864 PQQ_ABC_ATP ABC tran 97.5 0.00027 5.9E-09 48.0 5.3 23 17-39 27-49 (236)
417 PRK13540 cytochrome c biogenes 97.5 0.00024 5.1E-09 47.1 4.9 24 16-39 26-49 (200)
418 PRK10790 putative multidrug tr 97.5 0.00015 3.3E-09 55.5 4.4 24 16-39 366-389 (592)
419 PRK11174 cysteine/glutathione 97.5 0.00017 3.7E-09 55.1 4.7 24 16-39 375-398 (588)
420 TIGR01189 ccmA heme ABC export 97.5 0.0003 6.6E-09 46.5 5.4 24 16-39 25-48 (198)
421 PRK05480 uridine/cytidine kina 97.5 0.00014 3.1E-09 48.5 3.8 26 15-40 4-29 (209)
422 TIGR01193 bacteriocin_ABC ABC- 97.5 0.00011 2.5E-09 57.3 3.8 24 16-39 499-522 (708)
423 PRK02496 adk adenylate kinase; 97.5 0.00012 2.7E-09 47.8 3.4 22 18-39 2-23 (184)
424 cd03214 ABC_Iron-Siderophores_ 97.5 0.0003 6.6E-09 45.9 5.3 24 16-39 24-47 (180)
425 cd03293 ABC_NrtD_SsuB_transpor 97.5 0.00027 6E-09 47.4 5.2 23 17-39 30-52 (220)
426 KOG4273 Uncharacterized conser 97.5 0.00037 8E-09 48.2 5.7 91 20-116 7-103 (418)
427 PRK11248 tauB taurine transpor 97.5 0.00027 5.9E-09 48.7 5.2 23 17-39 27-49 (255)
428 cd00009 AAA The AAA+ (ATPases 97.5 0.00026 5.7E-09 43.4 4.7 34 7-40 9-42 (151)
429 PRK13543 cytochrome c biogenes 97.5 0.00027 5.9E-09 47.4 5.1 23 17-39 37-59 (214)
430 COG4525 TauB ABC-type taurine 97.5 0.00024 5.2E-09 47.5 4.6 22 18-39 32-53 (259)
431 PF13238 AAA_18: AAA domain; P 97.5 0.00011 2.5E-09 44.7 3.0 21 20-40 1-21 (129)
432 cd03256 ABC_PhnC_transporter A 97.5 0.00025 5.4E-09 48.2 4.9 23 17-39 27-49 (241)
433 cd03219 ABC_Mj1267_LivG_branch 97.5 0.00025 5.5E-09 48.0 5.0 23 17-39 26-48 (236)
434 cd03115 SRP The signal recogni 97.5 0.0029 6.3E-08 40.8 9.7 21 20-40 3-23 (173)
435 PRK14738 gmk guanylate kinase; 97.5 8E-05 1.7E-09 49.8 2.4 26 14-39 10-35 (206)
436 PRK13833 conjugal transfer pro 97.5 0.00074 1.6E-08 48.3 7.4 24 17-40 144-167 (323)
437 cd03269 ABC_putative_ATPase Th 97.5 0.00026 5.7E-09 47.2 4.9 23 17-39 26-48 (210)
438 PF04665 Pox_A32: Poxvirus A32 97.5 0.00013 2.8E-09 50.0 3.4 24 16-39 12-35 (241)
439 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.00093 2E-08 42.5 7.2 23 17-39 25-47 (157)
440 cd03301 ABC_MalK_N The N-termi 97.5 0.00031 6.7E-09 46.9 5.2 23 17-39 26-48 (213)
441 PRK14722 flhF flagellar biosyn 97.5 0.0011 2.3E-08 48.3 8.2 23 17-39 137-159 (374)
442 COG1117 PstB ABC-type phosphat 97.5 0.00032 7E-09 47.3 5.1 20 20-39 36-55 (253)
443 cd03296 ABC_CysA_sulfate_impor 97.5 0.00027 5.8E-09 48.1 4.9 22 18-39 29-50 (239)
444 cd03265 ABC_DrrA DrrA is the A 97.5 0.00031 6.7E-09 47.2 5.1 23 17-39 26-48 (220)
445 PRK13538 cytochrome c biogenes 97.5 0.00035 7.7E-09 46.4 5.4 23 17-39 27-49 (204)
446 PTZ00088 adenylate kinase 1; P 97.5 0.00014 3.1E-09 49.5 3.5 25 16-40 5-29 (229)
447 PF13555 AAA_29: P-loop contai 97.5 0.00016 3.6E-09 39.2 3.0 21 19-39 25-45 (62)
448 TIGR00101 ureG urease accessor 97.5 0.00015 3.2E-09 48.4 3.4 24 17-40 1-24 (199)
449 COG4987 CydC ABC-type transpor 97.5 0.00016 3.4E-09 54.4 3.9 24 16-39 363-386 (573)
450 TIGR03263 guanyl_kin guanylate 97.5 0.00012 2.6E-09 47.6 3.0 21 19-39 3-23 (180)
451 PRK14532 adenylate kinase; Pro 97.5 0.00014 3E-09 47.7 3.3 22 19-40 2-23 (188)
452 cd03246 ABCC_Protease_Secretio 97.5 0.00041 8.9E-09 45.0 5.5 22 18-39 29-50 (173)
453 PRK10895 lipopolysaccharide AB 97.5 0.00032 7E-09 47.7 5.2 24 16-39 28-51 (241)
454 cd00820 PEPCK_HprK Phosphoenol 97.5 0.00013 2.7E-09 44.0 2.8 21 18-38 16-36 (107)
455 TIGR03410 urea_trans_UrtE urea 97.5 0.0003 6.6E-09 47.5 5.0 24 16-39 25-48 (230)
456 cd03298 ABC_ThiQ_thiamine_tran 97.4 0.00035 7.6E-09 46.6 5.2 24 16-39 23-46 (211)
457 PRK14250 phosphate ABC transpo 97.4 0.00034 7.4E-09 47.7 5.3 22 18-39 30-51 (241)
458 COG2884 FtsE Predicted ATPase 97.4 0.00032 6.9E-09 46.5 4.7 21 19-39 30-50 (223)
459 TIGR03608 L_ocin_972_ABC putat 97.4 0.00019 4.1E-09 47.7 3.8 23 17-39 24-46 (206)
460 cd03230 ABC_DR_subfamily_A Thi 97.4 0.00041 8.8E-09 45.0 5.3 23 17-39 26-48 (173)
461 PRK13657 cyclic beta-1,2-gluca 97.4 0.0002 4.4E-09 54.7 4.4 24 16-39 360-383 (588)
462 PRK13638 cbiO cobalt transport 97.4 0.00032 6.9E-09 48.7 5.0 23 17-39 27-49 (271)
463 PF03205 MobB: Molybdopterin g 97.4 0.00014 3E-09 45.9 3.0 22 19-40 2-23 (140)
464 PRK11160 cysteine/glutathione 97.4 0.00022 4.8E-09 54.5 4.6 24 16-39 365-388 (574)
465 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00014 3E-09 47.4 3.1 21 19-39 5-25 (188)
466 TIGR01186 proV glycine betaine 97.4 0.00027 5.8E-09 51.3 4.7 23 17-39 19-41 (363)
467 cd03264 ABC_drug_resistance_li 97.4 0.00018 3.9E-09 48.0 3.7 23 16-39 25-47 (211)
468 PRK13646 cbiO cobalt transport 97.4 0.00034 7.3E-09 49.0 5.2 24 16-39 32-55 (286)
469 PRK10584 putative ABC transpor 97.4 0.00034 7.3E-09 47.2 5.0 23 17-39 36-58 (228)
470 cd02023 UMPK Uridine monophosp 97.4 0.00014 3.1E-09 48.0 3.1 21 20-40 2-22 (198)
471 cd03297 ABC_ModC_molybdenum_tr 97.4 0.00036 7.8E-09 46.7 5.1 22 18-39 24-45 (214)
472 TIGR02204 MsbA_rel ABC transpo 97.4 0.00021 4.5E-09 54.5 4.4 24 16-39 365-388 (576)
473 TIGR02769 nickel_nikE nickel i 97.4 0.00038 8.1E-09 48.2 5.2 23 17-39 37-59 (265)
474 TIGR00958 3a01208 Conjugate Tr 97.4 0.00019 4.1E-09 56.2 4.1 24 16-39 506-529 (711)
475 PRK11124 artP arginine transpo 97.4 0.0004 8.6E-09 47.3 5.3 23 17-39 28-50 (242)
476 cd03260 ABC_PstB_phosphate_tra 97.4 0.00036 7.9E-09 47.0 5.0 23 17-39 26-48 (227)
477 KOG0464 Elongation factor G [T 97.4 9.1E-05 2E-09 54.4 2.2 87 18-104 38-138 (753)
478 COG4615 PvdE ABC-type sideroph 97.4 0.0004 8.7E-09 50.9 5.4 80 20-117 352-431 (546)
479 PRK11264 putative amino-acid A 97.4 0.00041 8.9E-09 47.5 5.3 23 17-39 29-51 (250)
480 cd03251 ABCC_MsbA MsbA is an e 97.4 0.00038 8.3E-09 47.1 5.1 23 17-39 28-50 (234)
481 PRK00300 gmk guanylate kinase; 97.4 0.00015 3.3E-09 48.1 3.1 25 16-40 4-28 (205)
482 cd03295 ABC_OpuCA_Osmoprotecti 97.4 0.0004 8.6E-09 47.4 5.2 22 18-39 28-49 (242)
483 PRK15056 manganese/iron transp 97.4 0.00036 7.7E-09 48.5 5.0 23 17-39 33-55 (272)
484 COG4988 CydD ABC-type transpor 97.4 0.00029 6.4E-09 53.2 4.8 24 16-39 346-369 (559)
485 PRK11300 livG leucine/isoleuci 97.4 0.00037 7.9E-09 47.8 5.0 23 17-39 31-53 (255)
486 PRK13894 conjugal transfer ATP 97.4 0.0011 2.5E-08 47.2 7.5 24 16-39 147-170 (319)
487 cd03268 ABC_BcrA_bacitracin_re 97.4 0.00034 7.4E-09 46.6 4.7 23 17-39 26-48 (208)
488 TIGR01188 drrA daunorubicin re 97.4 0.00035 7.7E-09 49.3 5.0 23 17-39 19-41 (302)
489 TIGR03375 type_I_sec_LssB type 97.4 0.00024 5.1E-09 55.4 4.4 24 16-39 490-513 (694)
490 PF03266 NTPase_1: NTPase; In 97.4 0.00019 4.1E-09 46.6 3.3 22 19-40 1-22 (168)
491 KOG0066 eIF2-interacting prote 97.4 0.0019 4.2E-08 48.2 8.8 24 17-40 613-636 (807)
492 TIGR01184 ntrCD nitrate transp 97.4 0.00041 8.9E-09 47.0 5.1 23 17-39 11-33 (230)
493 PRK13949 shikimate kinase; Pro 97.4 0.00019 4.2E-09 46.6 3.3 23 18-40 2-24 (169)
494 PRK08233 hypothetical protein; 97.4 0.00022 4.8E-09 46.2 3.7 24 17-40 3-26 (182)
495 PRK14531 adenylate kinase; Pro 97.4 0.00019 4.2E-09 47.0 3.3 23 18-40 3-25 (183)
496 PRK15112 antimicrobial peptide 97.4 0.00043 9.3E-09 48.0 5.2 23 17-39 39-61 (267)
497 TIGR02857 CydD thiol reductant 97.4 0.00026 5.7E-09 53.4 4.4 24 16-39 347-370 (529)
498 KOG0058 Peptide exporter, ABC 97.4 0.00023 5E-09 55.0 4.1 30 17-57 494-523 (716)
499 PRK11831 putative ABC transpor 97.4 0.00044 9.4E-09 48.0 5.2 22 18-39 34-55 (269)
500 PRK13649 cbiO cobalt transport 97.4 0.00042 9.2E-09 48.3 5.1 22 18-39 34-55 (280)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.9e-28 Score=158.54 Aligned_cols=99 Identities=28% Similarity=0.528 Sum_probs=91.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+|+|++|+|||.|+.+|.. +.|.+.+.+|+|+.. ..+.+++ +.+++|||+||++++.+...++++
T Consensus 8 ylFKiiliGds~VGKtCL~~Rf~~------~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ 81 (205)
T KOG0084|consen 8 YLFKIILIGDSGVGKTCLLLRFKD------DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRG 81 (205)
T ss_pred eEEEEEEECCCCcChhhhhhhhcc------CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccC
Confidence 379999999999999999999999 999999999999885 4666776 789999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+||||+|||+++++||+.++.|+.++..+
T Consensus 82 ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~ 110 (205)
T KOG0084|consen 82 AHGIIFVYDITKQESFNNVKRWIQEIDRY 110 (205)
T ss_pred CCeEEEEEEcccHHHhhhHHHHHHHhhhh
Confidence 99999999999999999999999998653
No 2
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.8e-28 Score=153.95 Aligned_cols=114 Identities=37% Similarity=0.698 Sum_probs=107.7
Q ss_pred ChhhHHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
||.+++++|..++.+.+.+|+++|..++||||+++++.. ++.... .||+|++.+.+.+++.++++||.+||++
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~------~E~vtt-vPTiGfnVE~v~ykn~~f~vWDvGGq~k 73 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKL------GEIVTT-VPTIGFNVETVEYKNISFTVWDVGGQEK 73 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeecc------CCcccC-CCccccceeEEEEcceEEEEEecCCCcc
Confidence 999999999999999999999999999999999999977 555544 8999999999999999999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccCC
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSSE 121 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~~ 121 (121)
++..|+.++++.+++|||+|.+|++++.++++.+.++++++
T Consensus 74 ~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~ 114 (181)
T KOG0070|consen 74 LRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEP 114 (181)
T ss_pred cccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999998874
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.2e-27 Score=150.67 Aligned_cols=100 Identities=21% Similarity=0.420 Sum_probs=92.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
-+.+|++++|+.++|||||+.+|+. ..|.+.|.+|+|... ..+.+.+ +.+++|||+|||+++.+++.|++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~y------d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~R 93 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMY------DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR 93 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHH------hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhcc
Confidence 3569999999999999999999999 899999999999875 4555666 78999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
++.++|+|||++|..||++..+|+..++++
T Consensus 94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e 123 (221)
T KOG0094|consen 94 DSSVAVIVYDITDRNSFENTSKWIEDVRRE 123 (221)
T ss_pred CCeEEEEEEeccccchHHHHHHHHHHHHhc
Confidence 999999999999999999999999998765
No 4
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=5.2e-26 Score=148.98 Aligned_cols=113 Identities=34% Similarity=0.670 Sum_probs=100.6
Q ss_pred ChhhHHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
||.++++++.....+..+||+++|+++||||||++++.. +.+. .+.||+|.+...+...+..+++||++|+++
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~ 73 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDK 73 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCc-cccCCcceeEEEEEECCEEEEEEECCCCHH
Confidence 898888887766677789999999999999999999986 5555 467999988877878889999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
++..+..+++++|++++|||+++++++.++..++.+++++
T Consensus 74 ~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~ 113 (181)
T PLN00223 74 IRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE 113 (181)
T ss_pred HHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998887653
No 5
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=7.9e-26 Score=148.21 Aligned_cols=113 Identities=37% Similarity=0.691 Sum_probs=101.2
Q ss_pred ChhhHHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
||+++..+++....+..+||+++|+++||||||++++.. +.+.. +.||++.+...+...+..+.+||++|+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~------~~~~~-~~~T~~~~~~~~~~~~~~~~l~D~~G~~~ 73 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKL------GEVVT-TIPTIGFNVETVEYKNLKFTMWDVGGQDK 73 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhc------CCccc-cCCccccceEEEEECCEEEEEEECCCCHh
Confidence 898898999888888889999999999999999999976 55554 67899988777777889999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+...+..+++.+|++++|||++++++|+++..++.+++.+
T Consensus 74 ~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~ 113 (182)
T PTZ00133 74 LRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSE 113 (182)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999888887653
No 6
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-25 Score=144.76 Aligned_cols=99 Identities=28% Similarity=0.464 Sum_probs=89.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+|++++|++++|||||+.||.. +.|.....||+|... ..+.+.+ +.+.+|||+|+++|..+.+.+++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk------~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyR 76 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVK------DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYR 76 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhh------CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceec
Confidence 4689999999999999999999998 899988899999764 4556666 78899999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++++|+|||+++.+||..++.|+.++-+
T Consensus 77 gA~AAivvYDit~~~SF~~aK~WvkeL~~ 105 (200)
T KOG0092|consen 77 GANAAIVVYDITDEESFEKAKNWVKELQR 105 (200)
T ss_pred CCcEEEEEEecccHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998644
No 7
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.9e-24 Score=133.50 Aligned_cols=113 Identities=37% Similarity=0.682 Sum_probs=106.3
Q ss_pred ChhhHHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
||+-|+.++.+++...+++|+.+|..++||||+++.+.. ++. ....||+|++++.+++.+..+.+||++|+++
T Consensus 1 Mgn~~sk~~~k~f~~KE~~ilmlGLd~aGKTtiLyKLkl------~~~-~~~ipTvGFnvetVtykN~kfNvwdvGGqd~ 73 (180)
T KOG0071|consen 1 MGNYMSKLLSKIFGNKEMRILMLGLDAAGKTTILYKLKL------GQS-VTTIPTVGFNVETVTYKNVKFNVWDVGGQDK 73 (180)
T ss_pred CcchHHHHHHHHhCcccceEEEEecccCCceehhhHHhc------CCC-cccccccceeEEEEEeeeeEEeeeeccCchh
Confidence 899999999999999999999999999999999999986 333 3667999999999999999999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+++.|..++....++|||+|..+++.+++++..++.|+++
T Consensus 74 iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~ 113 (180)
T KOG0071|consen 74 IRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIIND 113 (180)
T ss_pred hhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999876
No 8
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.92 E-value=2.3e-24 Score=134.35 Aligned_cols=97 Identities=28% Similarity=0.534 Sum_probs=88.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
++++++|++|+|||+|+.+|.. ..|...|..|+|... ..+.++| +.++|||++|+++++.+...+++..+
T Consensus 9 fkllIigDsgVGKssLl~rF~d------dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgth 82 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFAD------DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTH 82 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhh------cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCc
Confidence 4558999999999999999998 788899999999874 5666776 78999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
++++|||+++.+||.+.++||++|.++
T Consensus 83 gv~vVYDVTn~ESF~Nv~rWLeei~~n 109 (198)
T KOG0079|consen 83 GVIVVYDVTNGESFNNVKRWLEEIRNN 109 (198)
T ss_pred eEEEEEECcchhhhHhHHHHHHHHHhc
Confidence 999999999999999999999999765
No 9
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.91 E-value=1e-23 Score=137.27 Aligned_cols=109 Identities=34% Similarity=0.700 Sum_probs=92.7
Q ss_pred ChhhHHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
||......+ +++.+||+++|++|+|||||++++.. +.+. .+.||++.+...+...+..+.+||++|+++
T Consensus 1 ~~~~~~~~~----~~~~~ki~l~G~~~~GKTsL~~~~~~------~~~~-~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~ 69 (175)
T smart00177 1 MGKLFSKLF----GNKEMRILMVGLDAAGKTTILYKLKL------GESV-TTIPTIGFNVETVTYKNISFTVWDVGGQDK 69 (175)
T ss_pred Cchhhhhhc----CCCccEEEEEcCCCCCHHHHHHHHhc------CCCC-CcCCccccceEEEEECCEEEEEEECCCChh
Confidence 565544443 34579999999999999999999976 5554 467899988777777888999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+...+..+++++|++++|||++++++++++..|+.+++++
T Consensus 70 ~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~ 109 (175)
T smart00177 70 IRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNE 109 (175)
T ss_pred hHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999887653
No 10
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.91 E-value=8.4e-24 Score=138.73 Aligned_cols=100 Identities=25% Similarity=0.443 Sum_probs=88.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
++..+||+++|++++|||||+.+|.. +.+...+.||++..+ ..+.+++ ..+.+|||+|++++..+...+++
T Consensus 2 ~~~~~KivvvGd~~vGKTsli~~~~~------~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~ 75 (182)
T cd04172 2 QNVKCKIVVVGDSQCGKTALLHVFAK------DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP 75 (182)
T ss_pred CcceEEEEEECCCCCCHHHHHHHHHh------CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcC
Confidence 45689999999999999999999998 888888999998665 3455665 67999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHH-HHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDS-KTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~-~~~l~~i~~ 119 (121)
++|++++|||+++++||+++ ..|+.++..
T Consensus 76 ~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~ 105 (182)
T cd04172 76 DSDAVLICFDISRPETLDSVLKKWKGEIQE 105 (182)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 789887753
No 11
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.91 E-value=7.4e-24 Score=133.66 Aligned_cols=96 Identities=28% Similarity=0.491 Sum_probs=87.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||++||++|+|||||+.+|.. ..|.+..+.|+|+.. ....+++ ..+.+|||+||++++.+.+.+++.
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~------~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRg 83 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVS------NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRG 83 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHh------cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhcc
Confidence 469999999999999999999998 788888888899774 5667776 679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
+.|+|+|||++.+++|..+..|+.++
T Consensus 84 aqGiIlVYDVT~Rdtf~kLd~W~~El 109 (209)
T KOG0080|consen 84 AQGIILVYDVTSRDTFVKLDIWLKEL 109 (209)
T ss_pred CceeEEEEEccchhhHHhHHHHHHHH
Confidence 99999999999999999999999875
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.91 E-value=2.2e-23 Score=138.70 Aligned_cols=95 Identities=25% Similarity=0.465 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
++|+++|++|||||||+++|.. +.|...+.+|++... ..+.+++ +.+.+||++|+++++.++..+++++|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~------~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad 74 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTD------DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAK 74 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHh------CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCC
Confidence 4789999999999999999998 888888889988654 4567776 77999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++++|||+++++||+++..|+..+.
T Consensus 75 ~iIlVfDvtd~~Sf~~l~~w~~~i~ 99 (202)
T cd04120 75 GIILVYDITKKETFDDLPKWMKMID 99 (202)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653
No 13
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.91 E-value=6.1e-24 Score=138.56 Aligned_cols=109 Identities=38% Similarity=0.757 Sum_probs=98.4
Q ss_pred HHHHHhhhcc-CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHH
Q 033349 5 FYGLWKYIFT-KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (121)
Q Consensus 5 ~~~~~~~~~~-~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 83 (121)
|+++++++.. ++.+||+++|+++|||||+++++.. +... .+.||.|++...+.+++..+.+||.+|+..++.
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~------~~~~-~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~ 73 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKN------GEIS-ETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRP 73 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHS------SSEE-EEEEESSEEEEEEEETTEEEEEEEESSSGGGGG
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhh------cccc-ccCcccccccceeeeCcEEEEEEeccccccccc
Confidence 4677777775 7899999999999999999999986 3332 478999999999999999999999999999999
Q ss_pred HHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
.|+.+++++|++|||+|.+|++.+.+++..+.+++++
T Consensus 74 ~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~ 110 (175)
T PF00025_consen 74 LWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLND 110 (175)
T ss_dssp GGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTS
T ss_pred cceeeccccceeEEEEecccceeecccccchhhhcch
Confidence 9999999999999999999999999999999998875
No 14
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.91 E-value=2e-23 Score=137.75 Aligned_cols=97 Identities=23% Similarity=0.355 Sum_probs=85.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
..+||+++|++++|||||+++|.. +.|...+.||++..+. .+.+++ +.+++||++|+++++.++..+++++
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a 75 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTT------NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQT 75 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHh------CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCC
Confidence 358999999999999999999998 8888889999987653 345555 6799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
|++++|||+++++||+++. .|+..+.
T Consensus 76 ~~~ilvydit~~~Sf~~~~~~w~~~i~ 102 (191)
T cd01875 76 NVFIICFSIASPSSYENVRHKWHPEVC 102 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 5887654
No 15
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.7e-23 Score=136.93 Aligned_cols=99 Identities=27% Similarity=0.480 Sum_probs=91.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+|++++|+++||||+++.+|.. ..|...+..|+|+.. ..+.+++ +.+++|||+||++++.+...+++.
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d------~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg 84 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSD------DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG 84 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhh------ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence 579999999999999999999999 889999999999875 5677777 679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
|+++++|||+++..||+++..|+..|-+|
T Consensus 85 A~gi~LvyDitne~Sfeni~~W~~~I~e~ 113 (207)
T KOG0078|consen 85 AMGILLVYDITNEKSFENIRNWIKNIDEH 113 (207)
T ss_pred cCeeEEEEEccchHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999987554
No 16
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.2e-23 Score=134.14 Aligned_cols=99 Identities=24% Similarity=0.373 Sum_probs=91.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+|.+++|+.|||||.|+.+|+. ..|...+..|+|++. ..+++++ +++++|||+|++.++++...+++.
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~------krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~ 78 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTD------KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRG 78 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhc------cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhcc
Confidence 468999999999999999999999 888889999999985 5677777 789999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+.|+++|||+++++||+.+..||.++..+
T Consensus 79 a~GalLVydit~r~sF~hL~~wL~D~rq~ 107 (216)
T KOG0098|consen 79 AAGALLVYDITRRESFNHLTSWLEDARQH 107 (216)
T ss_pred CcceEEEEEccchhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999998765
No 17
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.91 E-value=2.1e-23 Score=136.37 Aligned_cols=97 Identities=26% Similarity=0.450 Sum_probs=85.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.+||+++|++|+|||||+++|.. +.+...+.||++... ..+.+++ ..+.+||++|++.+....+.+++++|
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~ 74 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAK------DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSD 74 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCC
Confidence 37999999999999999999998 788888999998665 3455665 67999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHH-HHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDS-KTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~-~~~l~~i~~ 119 (121)
++++|||+++++||+++ ..|+..+..
T Consensus 75 ~~ilvfdit~~~Sf~~~~~~w~~~i~~ 101 (178)
T cd04131 75 AVLICFDISRPETLDSVLKKWRGEIQE 101 (178)
T ss_pred EEEEEEECCChhhHHHHHHHHHHHHHH
Confidence 99999999999999996 789887653
No 18
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.91 E-value=3.5e-23 Score=135.74 Aligned_cols=96 Identities=25% Similarity=0.416 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+|++++|++++|||||+++|.. +.+...+.||+|.+. ..+.+++ ..+.+||++|++++...+..+++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~------~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~ 74 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVE------GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAV 74 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCC
Confidence 5899999999999999999998 788888999999765 4566666 67999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++..|+.++..
T Consensus 75 ~iilv~D~t~~~s~~~i~~~~~~~~~ 100 (182)
T cd04128 75 AILFMFDLTRKSTLNSIKEWYRQARG 100 (182)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998754
No 19
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.90 E-value=2.7e-23 Score=135.70 Aligned_cols=96 Identities=23% Similarity=0.327 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+|++++|++++|||+|+.+|.. +.|..++.||++.... .+.+++ +.+.+||++|++++..+...+++++|+
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~------~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTS------NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADV 75 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhc------CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcE
Confidence 6899999999999999999998 8898889999986653 455555 779999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHH-HHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDS-KTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~-~~~l~~i~~ 119 (121)
+++|||+++++||+++ ..|+.++..
T Consensus 76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~ 101 (176)
T cd04133 76 FVLAFSLISRASYENVLKKWVPELRH 101 (176)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998 689988753
No 20
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.90 E-value=5.6e-23 Score=135.55 Aligned_cols=98 Identities=21% Similarity=0.374 Sum_probs=86.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|+.|+|||||+++|.. +.+...+.+|.+... ..+.+++ ..+++||++|++++..++..+++.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ 78 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD------GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRG 78 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcC
Confidence 469999999999999999999998 777777778887654 3455666 679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||+++++||+++..|+.++..
T Consensus 79 ad~illVfD~t~~~Sf~~~~~w~~~i~~ 106 (189)
T cd04121 79 AQGIILVYDITNRWSFDGIDRWIKEIDE 106 (189)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999854
No 21
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.90 E-value=5.2e-23 Score=136.87 Aligned_cols=96 Identities=19% Similarity=0.290 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEEC-------CeEEEEEECCCCcchHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-------NSKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-------~~~~~i~d~~g~~~~~~~~~~~ 88 (121)
+||+++|++++|||||++++.. +.+...+.+|+|... ..+.++ .+.+++||++|++++......+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~------~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~ 74 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK------NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVF 74 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHH
Confidence 5899999999999999999998 788888889999654 334442 2679999999999999999999
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|++++|||+++++||+++..|+.++..
T Consensus 75 yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~ 105 (202)
T cd04102 75 YNQVNGIILVHDLTNRKSSQNLQRWSLEALN 105 (202)
T ss_pred hCcCCEEEEEEECcChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999864
No 22
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.90 E-value=6.5e-23 Score=131.62 Aligned_cols=95 Identities=34% Similarity=0.726 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 97 (121)
+||+++|+++||||||++++.. +.+. .+.||+|.+...+...+..+.+||++|++++...+..+++++|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~------~~~~-~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~ 73 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKL------GEIV-TTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 73 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999976 5665 46789998877777778999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHhhcc
Q 033349 98 VIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|||++++++|+++..|+.+++.
T Consensus 74 v~D~~~~~s~~~~~~~~~~~~~ 95 (159)
T cd04150 74 VVDSNDRERIGEAREELQRMLN 95 (159)
T ss_pred EEeCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999998888764
No 23
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.90 E-value=9.3e-23 Score=132.05 Aligned_cols=99 Identities=37% Similarity=0.744 Sum_probs=87.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
++.+||+++|++++|||||++++.. +.+. .+.||++.....+...+..+++||++|++++...+..+++.+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~------~~~~-~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ 79 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKL------GQSV-TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG 79 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHcc------CCCc-cccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence 4679999999999999999999976 4554 45789998877777777999999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+++|||++++.+|+++..|+.+++++
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~ 105 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIIND 105 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcC
Confidence 99999999999999999998887653
No 24
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.90 E-value=8e-23 Score=138.47 Aligned_cols=98 Identities=24% Similarity=0.409 Sum_probs=86.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
..+||+++|+++||||+|+.+|.. +.|...+.||++..+. .+.+++ +.+.+|||+|++.+..+...+++++
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~------~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~a 85 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAK------DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS 85 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhc------CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCC
Confidence 468999999999999999999998 8888899999987653 455555 7799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHH-HHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDS-KTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~-~~~l~~i~~ 119 (121)
|++++|||+++++||+++ ..|+.++..
T Consensus 86 d~vIlVyDit~~~Sf~~~~~~w~~~i~~ 113 (232)
T cd04174 86 DAVLLCFDISRPETVDSALKKWKAEIMD 113 (232)
T ss_pred cEEEEEEECCChHHHHHHHHHHHHHHHH
Confidence 999999999999999985 789988753
No 25
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.5e-23 Score=137.18 Aligned_cols=98 Identities=24% Similarity=0.416 Sum_probs=90.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+|++++|++++|||-|+.+|.. .+|.-+..+|+|++.. .+.+++ +..+||||+||++|+.+...+++.+
T Consensus 14 lFKiVliGDS~VGKsnLlsRftr------nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 14 LFKIVLIGDSAVGKSNLLSRFTR------NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred EEEEEEeCCCccchhHHHHHhcc------cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 68999999999999999999999 8888899999998864 456666 7899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
.|+++|||++.+.+|+++..||.++++|
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdh 115 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDH 115 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999876
No 26
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.90 E-value=8.4e-23 Score=133.09 Aligned_cols=95 Identities=23% Similarity=0.334 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+||+++|++|+|||||+++|.. +.+...+.||++.... .+.+++ ..+.+||++|++++...+..+++++|+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~------~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~ 75 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTT------NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDV 75 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCE
Confidence 6899999999999999999998 8888889999987664 566666 678999999999999998999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 95 VVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+++|||++++++|+++. .|+..+.
T Consensus 76 ~ilv~d~~~~~s~~~~~~~w~~~i~ 100 (175)
T cd01874 76 FLVCFSVVSPSSFENVKEKWVPEIT 100 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999997 5887764
No 27
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.90 E-value=2.1e-22 Score=130.97 Aligned_cols=109 Identities=39% Similarity=0.707 Sum_probs=94.8
Q ss_pred HHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHH
Q 033349 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (121)
Q Consensus 5 ~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 84 (121)
+.++++....+..+||+++|++++|||||++++.. +.+.. +.||++.+...+.+++..+.+||+||++++...
T Consensus 3 ~~~~~~~~~~~~~~kv~~~G~~~~GKTsl~~~l~~------~~~~~-~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~ 75 (174)
T cd04153 3 FSSLWSLFFPRKEYKVIIVGLDNAGKTTILYQFLL------GEVVH-TSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75 (174)
T ss_pred hhHHHHHhcCCCccEEEEECCCCCCHHHHHHHHcc------CCCCC-cCCccccceEEEEECCeEEEEEECCCCHHHHHH
Confidence 45677766666789999999999999999999987 55554 578888888788888899999999999999999
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+..+++.+|++++|+|+++++++..+..++.+++++
T Consensus 76 ~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~ 111 (174)
T cd04153 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAH 111 (174)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999998888887653
No 28
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.90 E-value=1.7e-22 Score=130.13 Aligned_cols=96 Identities=28% Similarity=0.430 Sum_probs=84.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+||+++|++|+|||||++++.. +.+...+.+|++.... .+.+++ ..+.+||++|++++...+..+++++
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 75 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGA 75 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCC
Confidence 47999999999999999999998 7777788888887653 345555 5789999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
|++++|||++++++|+.+..|+..+.
T Consensus 76 ~~~ilv~d~~~~~s~~~~~~~~~~~~ 101 (166)
T cd04122 76 AGALMVYDITRRSTYNHLSSWLTDAR 101 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
No 29
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=6.3e-23 Score=128.66 Aligned_cols=96 Identities=28% Similarity=0.471 Sum_probs=87.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
-+|++++|+.|+|||.|+++|.. .++.+....|+|++.. -+.+.+ +++++|||+||++++.+...+++.+
T Consensus 9 LfKfl~iG~aGtGKSCLLh~Fie------~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 9 LFKFLVIGSAGTGKSCLLHQFIE------NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred hheeEEeccCCCChhHHHHHHHH------hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 58999999999999999999999 8899999999998863 344444 7899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.++++|||++++++|+.+..|+..++
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR 108 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDAR 108 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHH
Confidence 99999999999999999999998865
No 30
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.89 E-value=1.6e-22 Score=131.23 Aligned_cols=95 Identities=25% Similarity=0.447 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
||+++|++|+|||||++++.. +.+..++.||++... ..+.+++ ..+++||++|++++...+..+++.+|+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ 75 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCK------DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQA 75 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCE
Confidence 799999999999999999998 888889999998765 3455565 679999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++|||++++++++.+..|+..+++
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~~~~ 100 (170)
T cd04108 76 IIIVFDLTDVASLEHTRQWLEDALK 100 (170)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998754
No 31
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.1e-22 Score=127.22 Aligned_cols=96 Identities=34% Similarity=0.606 Sum_probs=89.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
-+||+++|..|+|||.|+++|.+ +-|+.-...|+|+. +..+.+++ +++++|||+|+++++++.+.+++.+
T Consensus 7 lfkivlvgnagvgktclvrrftq------glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsa 80 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSA 80 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhhc------cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhc
Confidence 58999999999999999999999 98988888999977 46777877 7899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++++|||++-..+|+-+.+|+.+|-
T Consensus 81 halilvydiscqpsfdclpewlreie 106 (213)
T KOG0095|consen 81 HALILVYDISCQPSFDCLPEWLREIE 106 (213)
T ss_pred ceEEEEEecccCcchhhhHHHHHHHH
Confidence 99999999999999999999998873
No 32
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.89 E-value=1.9e-22 Score=133.87 Aligned_cols=95 Identities=27% Similarity=0.483 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEEC-C--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+||+++|++|+|||||+++|.. +.+...+.+|++.+. ..+.++ + ..+.+||++|++.+...+..+++++
T Consensus 1 ~KivivG~~~vGKTsli~~l~~------~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a 74 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVH------GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGA 74 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCC
Confidence 5899999999999999999998 777778889998664 345555 3 6799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++++|||++++++|+++..|+..+.
T Consensus 75 ~~~ilv~D~t~~~s~~~~~~~~~~i~ 100 (201)
T cd04107 75 VGAIIVFDVTRPSTFEAVLKWKADLD 100 (201)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999987663
No 33
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.89 E-value=2.3e-22 Score=129.75 Aligned_cols=95 Identities=32% Similarity=0.599 Sum_probs=85.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
.|+++|++|+|||||+++|.+ +.+...+.||++.....+...+..+.+||++|+++++..+..+++.+|++++|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~------~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V 74 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSS------ERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFV 74 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhc------CCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 479999999999999999998 66667788999987666666778999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHhhcc
Q 033349 99 IDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~i~~ 119 (121)
||.+++.+|..++.|+.+++.
T Consensus 75 ~D~t~~~s~~~~~~~l~~~~~ 95 (164)
T cd04162 75 VDSADSERLPLARQELHQLLQ 95 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 34
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.89 E-value=3.2e-22 Score=126.37 Aligned_cols=107 Identities=34% Similarity=0.630 Sum_probs=94.9
Q ss_pred HHHhhhc-cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHH
Q 033349 7 GLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIW 85 (121)
Q Consensus 7 ~~~~~~~-~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~ 85 (121)
++.+.-. +.++++|.++|..|+||||++++|.+ ...+...||.|+++....+++.++.+||.+||..+++.|
T Consensus 5 silrk~k~kerE~riLiLGLdNsGKTti~~kl~~-------~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W 77 (185)
T KOG0073|consen 5 SILRKQKLKEREVRILILGLDNSGKTTIVKKLLG-------EDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYW 77 (185)
T ss_pred HHHHHHHhhhheeEEEEEecCCCCchhHHHHhcC-------CCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHH
Confidence 4444433 34699999999999999999999986 346688899999999999999999999999999999999
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+.|+..+|++|+|+|.+|+.++++....+.+.+.+
T Consensus 78 ~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~e 112 (185)
T KOG0073|consen 78 KNYFESTDGLIWVVDSSDRMRMQECKQELTELLVE 112 (185)
T ss_pred HHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998888877653
No 35
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.89 E-value=3.6e-22 Score=129.13 Aligned_cols=95 Identities=36% Similarity=0.698 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
+|+++|+++||||||++++.+ . +...+.||+|.....+...+..+.+||++|+++++..+..+++++|++++|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~------~-~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V 73 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQG------E-IPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFV 73 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhC------C-CCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEE
Confidence 479999999999999999986 3 556788999988778888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHhhccC
Q 033349 99 IDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
||++++.++++++.|+..++++
T Consensus 74 ~D~s~~~s~~~~~~~l~~l~~~ 95 (167)
T cd04161 74 VDSSDDDRVQEVKEILRELLQH 95 (167)
T ss_pred EECCchhHHHHHHHHHHHHHcC
Confidence 9999999999999999988754
No 36
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.89 E-value=2.1e-22 Score=135.50 Aligned_cols=99 Identities=19% Similarity=0.408 Sum_probs=87.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEE--ECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE--VSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++|||||||++++.. +.+...+.+|+|....... .++ ..+.+||++|++++...+..+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 84 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLT------GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI 84 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhh------CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcc
Confidence 4679999999999999999999988 7888889999997765433 333 78999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++|+.+..|+.++..
T Consensus 85 ~~~~~ilvfD~~~~~s~~~i~~w~~~i~~ 113 (219)
T PLN03071 85 HGQCAIIMFDVTARLTYKNVPTWHRDLCR 113 (219)
T ss_pred cccEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988753
No 37
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.89 E-value=3.3e-22 Score=128.50 Aligned_cols=96 Identities=24% Similarity=0.473 Sum_probs=85.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++|+|||||++++.. +.+...+.+|++.+. ..+.+++ ..+.+||++|++++...+..+++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 74 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTD------NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQ 74 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCc
Confidence 5899999999999999999998 778878889999764 3566666 57899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||+++++||+++..|+.++..
T Consensus 75 ~~i~v~d~~~~~sf~~~~~~~~~~~~ 100 (161)
T cd04117 75 GIFLVYDISSERSYQHIMKWVSDVDE 100 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 38
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.89 E-value=5.1e-22 Score=129.06 Aligned_cols=95 Identities=18% Similarity=0.293 Sum_probs=84.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.+||+++|++|+|||||++++.. +.+...+.||++... ..+.+++ ..+.+||++|++++..++..+++.+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d 75 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFIS------HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGE 75 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh------CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCC
Confidence 47999999999999999999998 788878889998655 3566666 67999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhh
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
++++|||+++++||+.+..|...+
T Consensus 76 ~~ilv~d~~~~~Sf~~~~~~~~~i 99 (172)
T cd04141 76 GFIICYSVTDRHSFQEASEFKKLI 99 (172)
T ss_pred EEEEEEECCchhHHHHHHHHHHHH
Confidence 999999999999999999876554
No 39
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.89 E-value=3.8e-22 Score=127.68 Aligned_cols=97 Identities=23% Similarity=0.364 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
++||+++|++|+|||||++++.. +.+...+.||.+... ..+.+++ ..+.+||++|++++...+..+++.+|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 74 (163)
T cd04136 1 EYKVVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQ 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCC
Confidence 37999999999999999999998 677777788877433 4455666 56889999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++..|+..+..
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~ 100 (163)
T cd04136 75 GFVLVYSITSQSSFNDLQDLREQILR 100 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887753
No 40
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.89 E-value=3.5e-22 Score=134.60 Aligned_cols=94 Identities=24% Similarity=0.414 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+||+++|++|+|||+|+.+|.. +.|...+.||++..+. .+.+++ +.+.+||++|++.+..+++.+++.+|+
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~------~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ 75 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK------DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDA 75 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc------CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCE
Confidence 7999999999999999999998 8888889999987653 455665 679999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHhh
Q 033349 95 VVFVIDAACPSRFEDSK-TALGKK 117 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~l~~i 117 (121)
+++|||++++++|+++. .|...+
T Consensus 76 illvfdis~~~Sf~~i~~~w~~~~ 99 (222)
T cd04173 76 VLICFDISRPETLDSVLKKWQGET 99 (222)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999995 676654
No 41
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.89 E-value=4.9e-22 Score=127.41 Aligned_cols=96 Identities=23% Similarity=0.504 Sum_probs=84.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++|+|||||++++++ +.+...+.+|++... ..+.+++ ..+.+||++|++.+...+..+++.+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCE------GRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQ 74 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCC
Confidence 5899999999999999999998 777778889998764 3455555 67999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+.+..|+.++..
T Consensus 75 ~~ilv~D~~~~~s~~~~~~~~~~~~~ 100 (168)
T cd04119 75 GVLLVYDVTDRQSFEALDSWLKEMKQ 100 (168)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHH
Confidence 99999999999999999999987753
No 42
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.89 E-value=4.5e-22 Score=129.51 Aligned_cols=98 Identities=21% Similarity=0.405 Sum_probs=85.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEEC------------CeEEEEEECCCCcch
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS------------NSKLVFWDLGGQPGL 81 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~------------~~~~~i~d~~g~~~~ 81 (121)
..+||+++|++|+|||||++++.. +.+...+.+|++.... .+.+. ...+.+||++|++++
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~ 76 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTD------NKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERF 76 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhc------CCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHH
Confidence 368999999999999999999998 7788888899986643 33332 267999999999999
Q ss_pred HHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
...+..+++++|++++|||+++++||.++..|+..+..
T Consensus 77 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~ 114 (180)
T cd04127 77 RSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQT 114 (180)
T ss_pred HHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988753
No 43
>PTZ00369 Ras-like protein; Provisional
Probab=99.89 E-value=5.2e-22 Score=130.65 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=86.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
.+.+||+++|++|+|||||++++.. +.+...+.||.+.... .+.+++ ..+.+||++|++++...+..+++.
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~ 76 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQ------NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRT 76 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhc
Confidence 3579999999999999999999998 7777788888886653 445555 568899999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+++..|+..+.+
T Consensus 77 ~d~iilv~D~s~~~s~~~~~~~~~~i~~ 104 (189)
T PTZ00369 77 GQGFLCVYSITSRSSFEEIASFREQILR 104 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887753
No 44
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.89 E-value=6.1e-22 Score=127.17 Aligned_cols=97 Identities=21% Similarity=0.359 Sum_probs=84.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
++||+++|++|+|||||+++++. +.+...+.+|++... ..+.+++ ..+.+||++|++++...+..+++.+|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQ------GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQ 74 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCC
Confidence 47999999999999999999998 777777888888554 3555665 56789999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++.+|+..+.+
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~~~~i~~ 100 (164)
T cd04175 75 GFVLVYSITAQSTFNDLQDLREQILR 100 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
No 45
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.88 E-value=7.1e-22 Score=131.05 Aligned_cols=98 Identities=29% Similarity=0.507 Sum_probs=86.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. +.+...+.+|++... ..+.+++ ..+.+||+||++.+...+..++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ 78 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFAD------NTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRG 78 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCC
Confidence 478999999999999999999998 777778889998664 3444555 578999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++++|||++++++|+.+..|+..+..
T Consensus 79 a~~iilv~D~~~~~s~~~~~~~~~~i~~ 106 (199)
T cd04110 79 THGVIVVYDVTNGESFVNVKRWLQEIEQ 106 (199)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988754
No 46
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.88 E-value=7.3e-22 Score=127.38 Aligned_cols=97 Identities=27% Similarity=0.487 Sum_probs=85.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||++|++.+...+..+++++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~a 76 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE------DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGA 76 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh------CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCC
Confidence 58999999999999999999998 778888889988754 3455666 5789999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|||++++++|+++.+|+..+..
T Consensus 77 d~~i~v~d~~~~~s~~~~~~~~~~i~~ 103 (167)
T cd01867 77 MGIILVYDITDEKSFENIRNWMRNIEE 103 (167)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence 999999999999999999999987753
No 47
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.88 E-value=6.7e-22 Score=127.97 Aligned_cols=95 Identities=40% Similarity=0.721 Sum_probs=85.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
|++++|+++||||||++++.. +.+. .+.||++.....+...+..+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~------~~~~-~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V 73 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQ------DEFM-QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFV 73 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhc------CCCC-CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEE
Confidence 689999999999999999987 5554 477899988877788889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHhhccC
Q 033349 99 IDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+|+++++++.++..|+.+++++
T Consensus 74 ~D~s~~~s~~~~~~~~~~~~~~ 95 (169)
T cd04158 74 VDSSHRDRVSEAHSELAKLLTE 95 (169)
T ss_pred EeCCcHHHHHHHHHHHHHHhcC
Confidence 9999999999999999988753
No 48
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.88 E-value=7.2e-22 Score=132.46 Aligned_cols=96 Identities=28% Similarity=0.445 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC---eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+||+++|++|+|||||+++|.+ +.+...+.+|++.+. ..+.+++ ..+.+||++|++.+...+..+++++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~------~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~a 74 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAK------EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGA 74 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcC
Confidence 5899999999999999999998 778888899998764 3455543 6799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|||++++++|+++..|+..+.+
T Consensus 75 d~iilV~D~t~~~s~~~~~~w~~~l~~ 101 (215)
T cd04109 75 HAVFLVYDVTNSQSFENLEDWYSMVRK 101 (215)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887653
No 49
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.88 E-value=9.3e-22 Score=126.12 Aligned_cols=97 Identities=25% Similarity=0.336 Sum_probs=83.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE-EEEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
++||+++|++|+|||||++++.. +.+...+.+|.+.. ...+.+++ ..+.+||++|++++...+..+++++|
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVS------GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQ 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCC
Confidence 47999999999999999999998 77777777877622 34555666 46889999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++..|+..+.+
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~ 100 (163)
T cd04176 75 GFIVVYSLVNQQTFQDIKPMRDQIVR 100 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877653
No 50
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.88 E-value=1.1e-21 Score=125.49 Aligned_cols=95 Identities=26% Similarity=0.552 Sum_probs=85.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
||+++|++++|||||+++|.+ +.+...+.+|.|.+.. .+..++ ..+.+||++|++.+......+++++|+
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 74 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLIN------GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDA 74 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHH------SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESE
T ss_pred CEEEECCCCCCHHHHHHHHHh------hcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 799999999999999999998 7888899999987653 455555 679999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++|||+++++||+.+..|+..+..
T Consensus 75 ~ii~fd~~~~~S~~~~~~~~~~i~~ 99 (162)
T PF00071_consen 75 IIIVFDVTDEESFENLKKWLEEIQK 99 (162)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999998753
No 51
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.8e-22 Score=128.60 Aligned_cols=120 Identities=58% Similarity=1.000 Sum_probs=106.3
Q ss_pred ChhhHHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc
Q 033349 1 MFSLFYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 79 (121)
|+.+++++|.+.+++..+.++++|+.++|||||+.+....+... .+-.+.+..||+|.+...+.+.+..+.+||.+||+
T Consensus 1 m~tl~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe 80 (197)
T KOG0076|consen 1 MFTLMSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQE 80 (197)
T ss_pred ChhHHHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChH
Confidence 99999999999999999999999999999999999976643322 12233466799999999999999999999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
..+++|..++..|+++++++|.+|++.|++.+..+..++.+
T Consensus 81 ~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~ 121 (197)
T KOG0076|consen 81 SLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVEN 121 (197)
T ss_pred HHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888877654
No 52
>PLN00023 GTP-binding protein; Provisional
Probab=99.88 E-value=6.1e-22 Score=138.75 Aligned_cols=100 Identities=19% Similarity=0.331 Sum_probs=88.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEEC---------------CeEEEEEECC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS---------------NSKLVFWDLG 76 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~---------------~~~~~i~d~~ 76 (121)
+...+||+++|+.|||||||+++|.. +.+...+.+|+|... ..+.++ .+.++|||++
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~------g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTA 91 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVK------GSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVS 91 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhc------CCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECC
Confidence 44679999999999999999999998 778888899999764 344443 2569999999
Q ss_pred CCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 77 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|+++++.++..++++++++|+|||++++++|+++..|+.++..
T Consensus 92 GqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~ 134 (334)
T PLN00023 92 GHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAA 134 (334)
T ss_pred CChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998864
No 53
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.88 E-value=4.4e-22 Score=128.60 Aligned_cols=96 Identities=18% Similarity=0.405 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE--CC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++|||||||++++.. +.+...+.+|.+.......+ ++ ..+.+||++|++.+...+..+++.+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQ 74 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCC
Confidence 5899999999999999999998 77777888999877654433 22 67999999999988888888999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+.+..|+.++..
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (166)
T cd00877 75 CAIIMFDVTSRVTYKNVPNWHRDLVR 100 (166)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 54
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.88 E-value=2.2e-21 Score=127.24 Aligned_cols=109 Identities=33% Similarity=0.565 Sum_probs=93.4
Q ss_pred hHHHHHhhh-ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchH
Q 033349 4 LFYGLWKYI-FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR 82 (121)
Q Consensus 4 ~~~~~~~~~-~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~ 82 (121)
-|.++++.+ ..++.++|+++|++|+|||||++++.. +.+. .+.||.++....+.+.+..+.+||++|++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~ 75 (184)
T smart00178 3 WFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKN------DRLA-QHQPTQHPTSEELAIGNIKFTTFDLGGHQQAR 75 (184)
T ss_pred HHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhc------CCCc-ccCCccccceEEEEECCEEEEEEECCCCHHHH
Confidence 466777754 237889999999999999999999987 4443 45678887777777888999999999999999
Q ss_pred HHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
..+..++.++|++++|+|+++++++.++..++.++++
T Consensus 76 ~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~ 112 (184)
T smart00178 76 RLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLS 112 (184)
T ss_pred HHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999888764
No 55
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.88 E-value=1.7e-21 Score=125.32 Aligned_cols=96 Identities=29% Similarity=0.533 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+.+ ..+.+||+||++++...+..+++.+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 75 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFAD------DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGA 75 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcC
Confidence 47999999999999999999998 667667778888654 3455555 5789999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
|++++|||++++++|.++..|+..+.
T Consensus 76 ~~ii~v~d~~~~~s~~~l~~~~~~~~ 101 (166)
T cd01869 76 HGIIIVYDVTDQESFNNVKQWLQEID 101 (166)
T ss_pred CEEEEEEECcCHHHHHhHHHHHHHHH
Confidence 99999999999999999999998764
No 56
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.88 E-value=1.4e-21 Score=125.89 Aligned_cols=96 Identities=26% Similarity=0.431 Sum_probs=84.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++|+|||||++++.. +.+...+.||.+.... .+..++ ..+.+||++|++++...+..+++.+|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~ 75 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAM 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCc
Confidence 7999999999999999999998 7777788889886543 344444 67999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++..|+..+..
T Consensus 76 ~~l~v~d~~~~~s~~~~~~~~~~i~~ 101 (165)
T cd01865 76 GFILMYDITNEESFNAVQDWSTQIKT 101 (165)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988743
No 57
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.88 E-value=1.6e-21 Score=125.87 Aligned_cols=99 Identities=19% Similarity=0.370 Sum_probs=85.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+||+++|++++|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++++...+..+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 76 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVT------NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYR 76 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHc------CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhc
Confidence 3569999999999999999999998 677777778888764 3455555 67899999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|||++++++|+.+..|+.+++.
T Consensus 77 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 105 (170)
T cd04116 77 GSDCCLLTFAVDDSQSFQNLSNWKKEFIY 105 (170)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence 99999999999999999999999887653
No 58
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.88 E-value=1.2e-21 Score=127.61 Aligned_cols=96 Identities=22% Similarity=0.365 Sum_probs=82.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.+||+++|++|+|||||+.++.. +.+...+.||++... ..+.+++ ..+.+||++|++.+...++.+++++|
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 74 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTT------NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTD 74 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhc------CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCC
Confidence 36999999999999999999998 788888889887543 2445555 67899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 94 AVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
++++|||+++++||+++. .|+..+.
T Consensus 75 ~~ilv~d~~~~~sf~~~~~~~~~~~~ 100 (174)
T cd01871 75 VFLICFSLVSPASFENVRAKWYPEVR 100 (174)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999996 5877654
No 59
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.88 E-value=2.6e-22 Score=127.02 Aligned_cols=95 Identities=31% Similarity=0.534 Sum_probs=86.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC---eEEEEEECCCCcchHHHHHHHhhc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
.+++.+||++-+|||+|++.|+. +.+.....||+|+.. ..++++. +++++|||+||++++++.+.++++
T Consensus 8 qfrlivigdstvgkssll~~ft~------gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrn 81 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTE------GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRN 81 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhc------CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhc
Confidence 68999999999999999999999 999989999999874 2334433 789999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
+-|+++|||++|++||+.++.|+.+.
T Consensus 82 svgvllvyditnr~sfehv~~w~~ea 107 (213)
T KOG0091|consen 82 SVGVLLVYDITNRESFEHVENWVKEA 107 (213)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHH
Confidence 99999999999999999999999863
No 60
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.88 E-value=2.5e-21 Score=125.57 Aligned_cols=99 Identities=40% Similarity=0.711 Sum_probs=86.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+...+||+++|++|+|||||++++.. ..+ ..+.+|++.....+.+++..+.+||+||++.++..+..+++.+|
T Consensus 11 ~~~~~kv~ivG~~~~GKTsL~~~l~~------~~~-~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~d 83 (173)
T cd04154 11 KEREMRILILGLDNAGKTTILKKLLG------EDI-DTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFESTD 83 (173)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHcc------CCC-CCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCC
Confidence 44679999999999999999999987 322 35678888777777788889999999999999889999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++..|+.+++.
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~ 109 (173)
T cd04154 84 ALIWVVDSSDRLRLDDCKRELKELLQ 109 (173)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888764
No 61
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.87 E-value=2.6e-21 Score=123.35 Aligned_cols=97 Identities=20% Similarity=0.297 Sum_probs=83.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++++...+..+++.+|
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~ 74 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQ------NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE 74 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCC
Confidence 37899999999999999999998 667777788887543 3455555 45889999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++..|+.++..
T Consensus 75 ~~i~v~~~~~~~s~~~~~~~~~~i~~ 100 (162)
T cd04138 75 GFLCVFAINSRKSFEDIHTYREQIKR 100 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887753
No 62
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.87 E-value=1.7e-21 Score=124.54 Aligned_cols=95 Identities=35% Similarity=0.627 Sum_probs=83.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCC-CCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL-PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 97 (121)
+|+++|++++|||||++++.. .. +...+.||++.....+...+..+.+||+||++++...+..+++.+|++++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~------~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 74 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKP------ENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIF 74 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcc------cCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEE
Confidence 589999999999999999987 43 34567899998776676777899999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHhhcc
Q 033349 98 VIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|+|++++.++..+..|+..++.
T Consensus 75 v~D~~~~~~~~~~~~~~~~~~~ 96 (162)
T cd04157 75 VIDSSDRLRLVVVKDELELLLN 96 (162)
T ss_pred EEeCCcHHHHHHHHHHHHHHHc
Confidence 9999999999999888887754
No 63
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=2.4e-21 Score=124.57 Aligned_cols=98 Identities=28% Similarity=0.513 Sum_probs=85.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++.+......+++.
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ 75 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKS------GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRS 75 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhh------CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhcc
Confidence 368999999999999999999987 677777778877543 4566666 578999999999999989999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+.+..|+..+..
T Consensus 76 ~d~~llv~d~~~~~s~~~~~~~~~~i~~ 103 (165)
T cd01864 76 ANGAIIAYDITRRSSFESVPHWIEEVEK 103 (165)
T ss_pred CCEEEEEEECcCHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999988754
No 64
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.87 E-value=2.2e-21 Score=124.60 Aligned_cols=96 Identities=21% Similarity=0.388 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++|+|||||++++.. +.+...+.+|.+.... ...+++ ..+.+||++|++++...+..+++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 74 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLM------DGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAH 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCC
Confidence 5899999999999999999998 6666666677665532 333444 57899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++.+++++..|+..+.+
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (161)
T cd04124 75 ACILVFDVTRKITYKNLSKWYEELRE 100 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987753
No 65
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.87 E-value=2.3e-21 Score=125.39 Aligned_cols=97 Identities=30% Similarity=0.562 Sum_probs=83.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchH-HHHHHHhhc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLR-SIWEKYYEE 91 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~-~~~~~~~~~ 91 (121)
.+||+++|++|+|||||++++.. +.+...+.+|++... ..+.+++ ..+.+||++|+++++ ..+..++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 75 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCA------GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRN 75 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHh------CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcC
Confidence 58999999999999999999998 777777888888654 3455566 679999999999887 467888899
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+.+..|+..+..
T Consensus 76 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (170)
T cd04115 76 VHAVVFVYDVTNMASFHSLPSWIEECEQ 103 (170)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHH
Confidence 9999999999999999999999987653
No 66
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.87 E-value=1.7e-21 Score=131.15 Aligned_cols=95 Identities=23% Similarity=0.307 Sum_probs=83.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 97 (121)
+||+++|++++|||||+++|.. +.+.. +.+|++.......+....+.+||++|++.+...+..+++.+|++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~------~~f~~-~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~Il 73 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYME------RRFKD-TVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVIL 73 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhc------CCCCC-CCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEE
Confidence 5899999999999999999998 66764 5789987766555666889999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHhhcc
Q 033349 98 VIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|||++++++|+++..|+..+..
T Consensus 74 V~Dvt~~~Sf~~l~~~~~~l~~ 95 (220)
T cd04126 74 TYDVSNVQSLEELEDRFLGLTD 95 (220)
T ss_pred EEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999988876653
No 67
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.87 E-value=2.8e-21 Score=124.82 Aligned_cols=97 Identities=27% Similarity=0.390 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+||+++|++++|||||++++.+ +.+...+.+|.+.+. ..+..++ ..+.+||++|++++......+++.+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 77 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGA 77 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccC
Confidence 48999999999999999999998 666666677877654 3444555 6799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|||++++++++.+..|+.++..
T Consensus 78 d~il~v~d~~~~~s~~~~~~~~~~~~~ 104 (168)
T cd01866 78 AGALLVYDITRRETFNHLTSWLEDARQ 104 (168)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987754
No 68
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=2e-21 Score=130.05 Aligned_cols=97 Identities=32% Similarity=0.551 Sum_probs=84.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEEC-C--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
.+||+++|++|+|||||++++.+ +.+...+.+|++.+.. .+.+. + ..+.+||++|++.+...+..++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~------~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 75 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTE------GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRN 75 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHc------CCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcC
Confidence 58999999999999999999998 6666677788886643 34443 3 679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++++++|+++.+|+.++..
T Consensus 76 ~d~iilv~D~~~~~Sf~~l~~~~~~i~~ 103 (211)
T cd04111 76 SVGVLLVFDITNRESFEHVHDWLEEARS 103 (211)
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 69
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=2.8e-21 Score=126.89 Aligned_cols=96 Identities=29% Similarity=0.506 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++|+|||||++++.. +.+...+.+|++... ..+.+++ ..+.+||++|++++...+..+++.+|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d 74 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTE------DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAH 74 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCC
Confidence 5899999999999999999998 777777888988654 4455555 57899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++..|+.++..
T Consensus 75 ~iilv~d~~~~~s~~~i~~~~~~i~~ 100 (188)
T cd04125 75 GYLLVYDVTDQESFENLKFWINEINR 100 (188)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 70
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.87 E-value=2.8e-21 Score=123.60 Aligned_cols=95 Identities=23% Similarity=0.486 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEEC----CeEEEEEECCCCcchHHHHHHHhhc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
+||+++|++++|||||++++.. +.+...+.+|++.+. ..+.++ ...+.+||+||++++...+..+++.
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 74 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVK------GIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRG 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcC
Confidence 5899999999999999999998 677777888988765 334444 3679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+|++++|||++++++|+.+..|+..+.
T Consensus 75 ~~~~v~v~d~~~~~s~~~l~~~~~~~~ 101 (162)
T cd04106 75 AQACILVFSTTDRESFEAIESWKEKVE 101 (162)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764
No 71
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.87 E-value=2.7e-21 Score=127.37 Aligned_cols=94 Identities=20% Similarity=0.261 Sum_probs=81.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
||+++|++|+|||||+++|.. +.+...+.+|++... ..+.+++ ..+.+||++|++++...+..+++.+|++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCL------NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGF 74 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEE
Confidence 589999999999999999998 777777888887543 3445555 4689999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHhhc
Q 033349 96 VFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 96 i~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++|||++++++|+.+..|+..+.
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~ 97 (190)
T cd04144 75 ILVYSITSRSTFERVERFREQIQ 97 (190)
T ss_pred EEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 72
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.87 E-value=8.2e-21 Score=124.68 Aligned_cols=112 Identities=38% Similarity=0.635 Sum_probs=93.3
Q ss_pred ChhhHHHHHhhhc-cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc
Q 033349 1 MFSLFYGLWKYIF-TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 1 m~~~~~~~~~~~~-~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 79 (121)
|+..+.++++.+. .++..|++++|++|||||||++++.+ +.+ ..+.||.++....+.+.+..+.+||+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~------~~~-~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~ 74 (190)
T cd00879 2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD------DRL-AQHVPTLHPTSEELTIGNIKFKTFDLGGHE 74 (190)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc------CCC-cccCCccCcceEEEEECCEEEEEEECCCCH
Confidence 3444455555433 45689999999999999999999987 444 356788888877888888999999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+...+..+++.+|++++|+|+++++++..+..|+.+++.
T Consensus 75 ~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~ 114 (190)
T cd00879 75 QARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLS 114 (190)
T ss_pred HHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHc
Confidence 9888889999999999999999999999999888888764
No 73
>PLN03110 Rab GTPase; Provisional
Probab=99.87 E-value=5.1e-21 Score=128.48 Aligned_cols=98 Identities=22% Similarity=0.384 Sum_probs=86.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||+++|.+ +.+...+.+|++.+. ..+.+++ +.+.+||++|++++...+..+++.
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~------~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 84 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTR------NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRG 84 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCC
Confidence 468999999999999999999998 667667789998775 3455555 689999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++++|||++++++|+.+..|+..+..
T Consensus 85 ~~~~ilv~d~~~~~s~~~~~~~~~~~~~ 112 (216)
T PLN03110 85 AVGALLVYDITKRQTFDNVQRWLRELRD 112 (216)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987653
No 74
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.87 E-value=4.9e-21 Score=122.98 Aligned_cols=97 Identities=25% Similarity=0.408 Sum_probs=84.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+||+++|++++|||||++++.+ +.+...+.||.+... ..+..++ ..+.+||++|++++...+..+++.+
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~ 76 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTR------NEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGA 76 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCC
Confidence 47999999999999999999998 666667778888654 3455555 5689999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++++|||++++++|+++.+|+..+..
T Consensus 77 ~~~i~v~d~~~~~s~~~~~~~~~~~~~ 103 (165)
T cd01868 77 VGALLVYDITKKQTFENVERWLKELRD 103 (165)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988754
No 75
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.87 E-value=7.9e-21 Score=121.65 Aligned_cols=97 Identities=16% Similarity=0.255 Sum_probs=83.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||+||++++...+..+++.+|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 75 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQ------SYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGE 75 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHh------CCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCC
Confidence 58999999999999999999998 566667777777443 3445665 56899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+.+..|+..+..
T Consensus 76 ~~ilv~d~~~~~s~~~~~~~~~~~~~ 101 (164)
T cd04145 76 GFLLVFSVTDRGSFEEVDKFHTQILR 101 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999887753
No 76
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=2.1e-21 Score=121.01 Aligned_cols=96 Identities=26% Similarity=0.418 Sum_probs=85.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEE-EC---CeEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIE-VS---NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~-~~---~~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
++|+.++|++++|||||+.+++. ..|...+.+|+|+....=+ ++ .+.+++|||.|+++|+.+...+++.+
T Consensus 21 mfKlliiGnssvGKTSfl~ry~d------dSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRga 94 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYAD------DSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGA 94 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhc------cccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhcc
Confidence 68999999999999999999998 7777788899998753212 22 27899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++|++||++|.+||+.+..|..+|-
T Consensus 95 mgfiLmyDitNeeSf~svqdw~tqIk 120 (193)
T KOG0093|consen 95 MGFILMYDITNEESFNSVQDWITQIK 120 (193)
T ss_pred ceEEEEEecCCHHHHHHHHHHHHHhe
Confidence 99999999999999999999998874
No 77
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.87 E-value=5.5e-21 Score=122.88 Aligned_cols=101 Identities=61% Similarity=1.074 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
+|+++|++|+|||||++++........+.+.+.+.+|++.+...+.+++..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 58999999999999999998743332234456778899988888888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHhhcc
Q 033349 99 IDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|.+++++++.+..|+.+++.
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~ 101 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLR 101 (167)
T ss_pred EECchHHHHHHHHHHHHHHHh
Confidence 999999999999999887764
No 78
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.87 E-value=2.2e-21 Score=127.72 Aligned_cols=96 Identities=27% Similarity=0.425 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
.||+++|++|+|||||+++|.. +.+...+.||++..+. .+..++ ..+.+||++|++.+..++..+++.+|+
T Consensus 1 ~kivivG~~~vGKTsli~~~~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~ 74 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTR------GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDV 74 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCE
Confidence 3899999999999999999998 7888888899887653 344555 679999999999998888889999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSK-TALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~l~~i~~ 119 (121)
+++|||++++++|+.+. .|+..+..
T Consensus 75 ~ilv~dv~~~~sf~~~~~~~~~~i~~ 100 (189)
T cd04134 75 IMLCFSVDSPDSLENVESKWLGEIRE 100 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999986 68887754
No 79
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.86 E-value=6.2e-21 Score=121.89 Aligned_cols=96 Identities=20% Similarity=0.429 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++++|||||++++.+ ..+...+.++.+.+. ..+.+++ ..+.+||+||++++...+..+++.+|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~ 74 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMY------DTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSS 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCC
Confidence 4899999999999999999998 666666777777654 3455555 56899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++|+++..|+..+..
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~ 100 (161)
T cd01861 75 VAVVVYDITNRQSFDNTDKWIDDVRD 100 (161)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998753
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.86 E-value=4.5e-21 Score=131.12 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=83.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCce-EEEEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL-NIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+||+++|++|+|||||+++|.. +.+...+.+|++. ....+.+++ ..+.+||++|++.+......++..+|+
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~------~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~ 74 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLG------GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDV 74 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHc------CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCE
Confidence 5899999999999999999998 7787788888873 334566666 678999999999998888888899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++|||+++++||+++..|+.+++.
T Consensus 75 iIlVfdv~~~~Sf~~i~~~~~~I~~ 99 (247)
T cd04143 75 FILVFSLDNRESFEEVCRLREQILE 99 (247)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888853
No 81
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.86 E-value=3.6e-22 Score=128.33 Aligned_cols=100 Identities=26% Similarity=0.414 Sum_probs=91.1
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
+...+|++++|++|+|||||.+++.. ..|...+..|+|... ..+.+++ +.+++|||+||+++.++.-.++
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~------~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFY 79 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVN------KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFY 79 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHH------HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhccccee
Confidence 35679999999999999999999999 888889999999764 5677777 7899999999999999999999
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+.+|..++|||+.+++||+.+..|-.+++.
T Consensus 80 RgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~ 109 (210)
T KOG0394|consen 80 RGADCCVLVYDVNNPKSFENLENWRKEFLI 109 (210)
T ss_pred cCCceEEEEeecCChhhhccHHHHHHHHHH
Confidence 999999999999999999999999988764
No 82
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.86 E-value=6.8e-21 Score=122.32 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC--eEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
+||+++|++|+|||||++++.. +.+...+.|+.+.....+.+++ ..+.+||++|++. ..+++++|++
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~------~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ 69 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLT------GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAV 69 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHh------CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEE
Confidence 5899999999999999999988 6666666666554445677777 6699999999975 2456889999
Q ss_pred EEEEeCCCcccHHHHHHHHHhhcc
Q 033349 96 VFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 96 i~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++|||++|++||+++..|+.++..
T Consensus 70 ilv~d~~~~~sf~~~~~~~~~i~~ 93 (158)
T cd04103 70 IFVFSLENEASFQTVYNLYHQLSS 93 (158)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999998864
No 83
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.86 E-value=5.6e-21 Score=122.53 Aligned_cols=98 Identities=20% Similarity=0.364 Sum_probs=82.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEEC---CeEEEEEECCCCcchHHHHHHHhhcc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVS---NSKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+||+++|++|||||||++++.. ....+...+.+|.|.... .+.+. ...+.+||++|++.+...+..+++.+
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 76 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHS----NGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESP 76 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc----CCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCC
Confidence 5899999999999999999986 113566788889887642 33333 27899999999999999899999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|||++++++|+++..|+.++..
T Consensus 77 d~ii~v~d~~~~~s~~~~~~~~~~~~~ 103 (164)
T cd04101 77 SVFILVYDVSNKASFENCSRWVNKVRT 103 (164)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987653
No 84
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.86 E-value=9.3e-21 Score=121.24 Aligned_cols=95 Identities=31% Similarity=0.502 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++++|||||++++.+ +.+...+.++.+.... .+.+++ ..+.+||++|++.+...+..+++.+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~ 74 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVE------NKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAA 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCC
Confidence 5899999999999999999998 6666677777775543 344555 57899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++++|||++++++|+.+..|+.++.
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~ 99 (161)
T cd04113 75 GALLVYDITNRTSFEALPTWLSDAR 99 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998763
No 85
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.86 E-value=7.3e-21 Score=124.65 Aligned_cols=95 Identities=22% Similarity=0.363 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEEC-C--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++|+|||||++++.. +.+...+.+|++..+ ..+... + ..+.+||++|++++...+..+++.+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~------~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad 74 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQ------GKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVD 74 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHh------CcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCC
Confidence 5899999999999999999998 777778888887664 344444 3 67999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 94 AVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
++++|||++++++|+++. .|+..+.
T Consensus 75 ~ii~v~d~~~~~s~~~~~~~~~~~~~ 100 (187)
T cd04132 75 VLLICYAVDNPTSLDNVEDKWFPEVN 100 (187)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999996 5876653
No 86
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.86 E-value=1e-20 Score=121.08 Aligned_cols=97 Identities=25% Similarity=0.446 Sum_probs=83.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
++||+++|++++|||||++++.+ +.+...+.+|.+... ..+.+++ ..+.+||++|++++...+..+++.+
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 74 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVK------NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGA 74 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHc------CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccC
Confidence 47999999999999999999998 666666778887543 3455555 6789999999999998899999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|+|++++++|+.+..|+..+..
T Consensus 75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~ 101 (163)
T cd01860 75 AAAIVVYDITSEESFEKAKSWVKELQR 101 (163)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887654
No 87
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.86 E-value=9.2e-21 Score=121.51 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+||+++|++|+|||||++++.. +.+...+.+|.+... ....+++ ..+.+||+||++++...+..+++.+|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~ 74 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQ------GHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCE
Confidence 5899999999999999999998 666666677776432 3444555 678999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++|||++++++|+++..|...+.+
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~i~~ 99 (164)
T smart00173 75 FLLVYSITDRQSFEEIKKFREQILR 99 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877643
No 88
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.86 E-value=1.3e-20 Score=121.29 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+||+++|++|+|||||++++.. +.+...+.||.+.... .+.... ..+.+||++|++++......+++.+|+
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 75 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVK------GTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHA 75 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCE
Confidence 7899999999999999999998 7777777888875542 233333 679999999999999988889999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++|||++++++|+++..|+..+.
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~ 99 (165)
T cd04140 76 FILVYSVTSKQSLEELKPIYELIC 99 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999998876553
No 89
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.86 E-value=9.6e-21 Score=122.68 Aligned_cols=97 Identities=19% Similarity=0.279 Sum_probs=85.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
+..+|++++|++|+|||||+++|.. +.+. ..+.||++... ..+.+++ ..+.+||++|++.+...+..++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~------~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~ 75 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLG------RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAEL 75 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhC------CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhh
Confidence 4579999999999999999999998 7777 78899998654 3456666 5789999999999888888889
Q ss_pred hccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
+++|++++|||++++++|+.+..|+..+
T Consensus 76 ~~~d~~llv~d~~~~~s~~~~~~~~~~~ 103 (169)
T cd01892 76 AACDVACLVYDSSDPKSFSYCAEVYKKY 103 (169)
T ss_pred hcCCEEEEEEeCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999998865
No 90
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.86 E-value=1e-20 Score=124.58 Aligned_cols=96 Identities=26% Similarity=0.369 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-cccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+||+++|++|+|||||+++|.. +.+.. .+.+|++..+ ..+.+++ ..+.+||++|++++...+..+++.+
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 74 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVH------HRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGA 74 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCC
Confidence 5899999999999999999998 66653 6778888654 3566666 5678999999999988888999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|||++++++|+++..|+..+..
T Consensus 75 d~iilv~d~~~~~s~~~~~~~~~~i~~ 101 (193)
T cd04118 75 KAAIVCYDLTDSSSFERAKFWVKELQN 101 (193)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988754
No 91
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.86 E-value=1.1e-20 Score=124.59 Aligned_cols=96 Identities=32% Similarity=0.578 Sum_probs=81.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+||+++|++|+|||||++++.. +.+. ..+.+|.+.... .+.+++ ..+.+||+||++++...+..+++.+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a 74 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD------GAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDA 74 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCC
Confidence 5899999999999999999987 5554 356778776543 355665 6799999999999998888999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++|||++++++|+++..|+..+..
T Consensus 75 d~~i~v~D~~~~~s~~~~~~~~~~i~~ 101 (191)
T cd04112 75 HALLLLYDITNKASFDNIRAWLTEIKE 101 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987753
No 92
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.86 E-value=1.5e-20 Score=120.20 Aligned_cols=96 Identities=31% Similarity=0.544 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++++|||||++++.+ ..+...+.++.+... ..+..++ ..+.+||+||++++...+..+++.+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d 74 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTD------GKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAV 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCC
Confidence 5899999999999999999987 555666677777654 3455655 67899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||++++++++.+..|+..+..
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~l~~~~~ 100 (164)
T smart00175 75 GALLVYDITNRESFENLKNWLKELRE 100 (164)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987653
No 93
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.85 E-value=2.1e-20 Score=122.52 Aligned_cols=97 Identities=40% Similarity=0.705 Sum_probs=80.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE-----CCeEEEEEECCCCcchHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-----SNSKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
..+||+++|++|||||||++++.. +.+... .||.+.......+ .+..+.+||++|++++...+..+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~------~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 74 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKF------NEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTR 74 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhc------CCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhc
Confidence 368999999999999999999987 555433 5777766544433 2478999999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
.+|++++|+|++++++++.+..|+.++..
T Consensus 75 ~~d~ii~v~D~~~~~~~~~~~~~~~~i~~ 103 (183)
T cd04152 75 CTDGIVFVVDSVDVERMEEAKTELHKITR 103 (183)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999888877653
No 94
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.85 E-value=2.2e-20 Score=119.18 Aligned_cols=94 Identities=41% Similarity=0.784 Sum_probs=84.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
||+++|++|+|||||++++++ +. ...+.+|.+.....+.+.+..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ki~iiG~~~~GKssli~~~~~------~~-~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 73 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKL------GE-VVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFV 73 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhc------CC-CCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEE
Confidence 689999999999999999997 33 33667888988888888889999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHhhcc
Q 033349 99 IDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~i~~ 119 (121)
||+++++++..+..|+..++.
T Consensus 74 ~D~~~~~~~~~~~~~~~~~~~ 94 (158)
T cd00878 74 VDSSDRERIEEAKEELHKLLN 94 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHh
Confidence 999999999999999887765
No 95
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.85 E-value=2.9e-20 Score=120.00 Aligned_cols=96 Identities=15% Similarity=0.294 Sum_probs=83.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
++||+++|++|+|||||++++.+ +.+...+.+|.+... ..+.+++ ..+++||+||++++...+..+++.++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 74 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQ------NVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQ 74 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCC
Confidence 47899999999999999999998 777777888887553 3445555 67899999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++++|||++++++++.+..|...+.
T Consensus 75 ~~vlv~~~~~~~s~~~~~~~~~~i~ 99 (168)
T cd04177 75 GFLLVYSVTSEASLNELGELREQVL 99 (168)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999998888765
No 96
>PLN03108 Rab family protein; Provisional
Probab=99.85 E-value=4.1e-20 Score=123.63 Aligned_cols=97 Identities=28% Similarity=0.392 Sum_probs=84.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++++|||||+++++. ..+...+.+|++.+. ..+.+++ ..+.+||++|++.+...+..+++.
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~------~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ 78 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTD------KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRG 78 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcc
Confidence 358999999999999999999998 666667778888664 3456666 568899999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+|++++|||++++++|+.+..|+..+.
T Consensus 79 ad~~vlv~D~~~~~s~~~l~~~~~~~~ 105 (210)
T PLN03108 79 AAGALLVYDITRRETFNHLASWLEDAR 105 (210)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHH
Confidence 999999999999999999999988764
No 97
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.84 E-value=3.6e-20 Score=118.35 Aligned_cols=95 Identities=37% Similarity=0.708 Sum_probs=81.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcchHHHHHHHhhccCEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 97 (121)
+|+++|++|+|||||++++.. +.+. .+.||.+.....+...+ ..+.+||++|++.+...+..+++.+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~------~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~ 73 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKH------AELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVY 73 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhc------CCcc-cccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 589999999999999999987 5554 34688887766665543 789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHhhccC
Q 033349 98 VIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 98 v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
|+|++++.++.++..|+.+++.+
T Consensus 74 v~D~~~~~~~~~~~~~~~~~~~~ 96 (160)
T cd04156 74 VVDSSDEARLDESQKELKHILKN 96 (160)
T ss_pred EEECCcHHHHHHHHHHHHHHHhc
Confidence 99999999999999999887653
No 98
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.84 E-value=1.4e-20 Score=125.10 Aligned_cols=91 Identities=18% Similarity=0.371 Sum_probs=80.6
Q ss_pred EcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEE--EEECC--eEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 23 LGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 23 vG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
+|+++||||||++++.. +.+...+.+|+|..... +.+++ ..+.+||++|++++..++..+++.+|++++|
T Consensus 1 vG~~~vGKTsLi~r~~~------~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV 74 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM 74 (200)
T ss_pred CCCCCCCHHHHHHHHhc------CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEE
Confidence 69999999999999998 77877889999877643 34444 7899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHhhcc
Q 033349 99 IDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~i~~ 119 (121)
||+++++||+.+..|+.++..
T Consensus 75 ~D~t~~~S~~~i~~w~~~i~~ 95 (200)
T smart00176 75 FDVTARVTYKNVPNWHRDLVR 95 (200)
T ss_pred EECCChHHHHHHHHHHHHHHH
Confidence 999999999999999998764
No 99
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.84 E-value=4.4e-20 Score=118.02 Aligned_cols=96 Identities=26% Similarity=0.507 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+|++++|++++|||||++++.+ ..+...+.+|.+... ..+.+.+ ..+.+||+||++++...+..+++.+|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 74 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTD------DTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQ 74 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHc------CCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCC
Confidence 5899999999999999999998 666556778887654 3344444 67999999999999888899999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|||.+++++|+.+..|+..+..
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~~ 100 (161)
T cd01863 75 GVILVYDVTRRDTFTNLETWLNELET 100 (161)
T ss_pred EEEEEEECCCHHHHHhHHHHHHHHHH
Confidence 99999999999999999999887643
No 100
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.84 E-value=2.3e-20 Score=120.80 Aligned_cols=94 Identities=26% Similarity=0.412 Sum_probs=80.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCEEE
Q 033349 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 96 (121)
|+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++++...+..+++.+|+++
T Consensus 1 i~i~G~~~vGKTsli~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 74 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTT------NAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFL 74 (174)
T ss_pred CEEECCCCCCHHHHHHHHHh------CCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEE
Confidence 58999999999999999998 777777778876554 3455555 56999999999999989999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHhhcc
Q 033349 97 FVIDAACPSRFEDSK-TALGKKGS 119 (121)
Q Consensus 97 ~v~d~~~~~s~~~~~-~~l~~i~~ 119 (121)
+|||++++++|+++. .|+..+..
T Consensus 75 lv~d~~~~~s~~~~~~~~~~~i~~ 98 (174)
T smart00174 75 ICFSVDSPASFENVKEKWYPEVKH 98 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh
Confidence 999999999999996 58887653
No 101
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.84 E-value=2.6e-20 Score=120.79 Aligned_cols=95 Identities=20% Similarity=0.307 Sum_probs=80.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+|++++|++|+|||||+.++.. +.+..++.+|..... ..+.+++ ..+.+||++|++++...+..+++++|+
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~ 74 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTT------NGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDV 74 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcE
Confidence 5899999999999999999988 677778888864332 3455555 578999999999998888889999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 95 VVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+++|||++++++|+++. .|+..+.
T Consensus 75 ~i~v~d~~~~~sf~~~~~~~~~~~~ 99 (173)
T cd04130 75 FLLCFSVVNPSSFQNISEKWIPEIR 99 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999985 6887664
No 102
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.84 E-value=5.9e-20 Score=118.41 Aligned_cols=95 Identities=26% Similarity=0.434 Sum_probs=80.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++++|||||++++.+ ..+...+.+|.+... ..+.+.+ ..+.+||+||++.+...+..+++.+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 74 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN------KKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGAD 74 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc------CCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCC
Confidence 5899999999999999999988 556666677777653 3455555 56789999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++++||++++++++++..|...++
T Consensus 75 ~~i~v~d~~~~~~~~~~~~~~~~~~ 99 (172)
T cd01862 75 CCVLVYDVTNPKSFESLDSWRDEFL 99 (172)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988877654
No 103
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.84 E-value=6.3e-20 Score=116.17 Aligned_cols=95 Identities=37% Similarity=0.717 Sum_probs=85.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
.|+++|++|+|||||++++.+ ..+...+.||.+.+...+...+..+.+||+||+..+...+..+++.+|++++|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v 74 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAG------GQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYV 74 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHcc------CCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 379999999999999999998 67777888999988777777778999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHhhcc
Q 033349 99 IDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++.++..+..|+.+++.
T Consensus 75 ~d~~~~~~~~~~~~~~~~~~~ 95 (159)
T cd04159 75 VDAADRTALEAAKNELHDLLE 95 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHc
Confidence 999999999988888877653
No 104
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.84 E-value=5.6e-20 Score=117.53 Aligned_cols=94 Identities=37% Similarity=0.714 Sum_probs=80.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFV 98 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v 98 (121)
||+++|++++|||||++++.. +.+. .+.||++.+...+...+..+++||+||++.+...+..+++.+|++++|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~------~~~~-~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v 73 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQL------GEVV-TTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYV 73 (158)
T ss_pred CEEEECCCCCCHHHHHHHHcc------CCCc-CcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 689999999999999999976 4443 346888877777777788999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHhhcc
Q 033349 99 IDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 99 ~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++.++..+..++..+++
T Consensus 74 ~d~~~~~~~~~~~~~~~~~~~ 94 (158)
T cd04151 74 VDSTDRDRLGTAKEELHAMLE 94 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHh
Confidence 999999888887777766543
No 105
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.84 E-value=8.3e-21 Score=118.26 Aligned_cols=111 Identities=35% Similarity=0.683 Sum_probs=98.5
Q ss_pred hHHHHHhhh---ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 4 LFYGLWKYI---FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 4 ~~~~~~~~~---~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
.+.+.+.++ +=+.++++.++|..++|||||++.+.. +.+.....||+|++..+++-.+..+.+||.+|+.+
T Consensus 4 ~~~k~L~wi~~~f~k~emel~lvGLq~sGKtt~Vn~ia~------g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~r 77 (186)
T KOG0075|consen 4 KLRKKLVWICNSFWKEEMELSLVGLQNSGKTTLVNVIAR------GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPR 77 (186)
T ss_pred HHHHHHHHHHHHHHHheeeEEEEeeccCCcceEEEEEee------ccchhhhcccccceeEEeccCceEEEEEecCCCcc
Confidence 344444443 235799999999999999999999988 88988999999999999988899999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
++..|..+++.++++++|+|.+|++.+..++..+..++..
T Consensus 78 frsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k 117 (186)
T KOG0075|consen 78 FRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDK 117 (186)
T ss_pred HHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcc
Confidence 9999999999999999999999999999998888887764
No 106
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=112.47 Aligned_cols=101 Identities=40% Similarity=0.742 Sum_probs=90.7
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcchHHHHHHHhhc
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
++.+++||+++|..++||||++.++.. +-+....||.|++...+.+.+ ..+.+||.+|+..++..|..++.+
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~s-------ED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyen 85 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKS-------EDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYEN 85 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHcc-------CChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhc
Confidence 346899999999999999999999875 334467799999999999988 899999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
.|++|+|.|.+|+..|++...-+-+++++
T Consensus 86 vd~lIyVIDS~D~krfeE~~~el~ELlee 114 (185)
T KOG0074|consen 86 VDGLIYVIDSTDEKRFEEISEELVELLEE 114 (185)
T ss_pred cceEEEEEeCCchHhHHHHHHHHHHHhhh
Confidence 99999999999999999998888777664
No 107
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.83 E-value=6.3e-20 Score=121.81 Aligned_cols=96 Identities=19% Similarity=0.235 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchH--------HHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLR--------SIW 85 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~--------~~~ 85 (121)
+||+++|++|||||||++++.. +.+...+.||.+... ..+.+++ ..+++||++|.+.+. ...
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~------~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLA------QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHc------CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHH
Confidence 5899999999999999999998 777777888887543 3455667 678899999965321 123
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
...++.+|++++|||+++++||+.++.|+..+++
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~ 108 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILE 108 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999887754
No 108
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.83 E-value=1.2e-19 Score=114.72 Aligned_cols=96 Identities=30% Similarity=0.516 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEE--EECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI--EVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++++|||||++++.+ ..+...+.+|.+.+.... ..++ ..+.+||+||+..+...+..+++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d 74 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVD------GKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAH 74 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHh------CcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCC
Confidence 5899999999999999999998 666666778888765433 3323 67999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++++|+|.+++++++.+..|+..+..
T Consensus 75 ~ii~v~d~~~~~~~~~~~~~~~~~~~ 100 (159)
T cd00154 75 GAILVYDITNRESFENLDKWLKELKE 100 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987754
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.83 E-value=1.9e-19 Score=120.55 Aligned_cols=98 Identities=18% Similarity=0.403 Sum_probs=85.4
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE--CC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
...+|++++|++|+|||||+++++. +.+...+.+|++.......+ ++ +.+.+||++|++++...+..++.
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~ 80 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLT------GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI 80 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHh------CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence 3579999999999999999998887 77777889999987655443 33 78999999999999888888999
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.++++++|||++++.+|..+..|+..+.
T Consensus 81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~ 108 (215)
T PTZ00132 81 KGQCAIIMFDVTSRITYKNVPNWHRDIV 108 (215)
T ss_pred cCCEEEEEEECcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
No 110
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.82 E-value=1.3e-19 Score=116.55 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcc-hHHHHHHHhhccCE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPG-LRSIWEKYYEEAHA 94 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~-~~~~~~~~~~~~~~ 94 (121)
||+++|++|+|||||+++++. +.+...+.+|.+... ..+.+++ ..+++||+||++. .......+++.+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~ 74 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT------KRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADG 74 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh------CccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCE
Confidence 589999999999999999987 666667777765333 3445555 5689999999885 33456677899999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++|||++++++|+.+..|+..+.
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~ 98 (165)
T cd04146 75 FVLVYSITDRSSFDEISQLKQLIR 98 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHH
Confidence 999999999999999998886654
No 111
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.82 E-value=3.1e-19 Score=113.74 Aligned_cols=95 Identities=22% Similarity=0.406 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
+||+++|++|+|||||++++.. +.+...+.++..... ..+.+.+ ..+.+||++|++.+...+..+++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~ 74 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVE------NKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDAD 74 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCC
Confidence 5899999999999999999998 555445555554432 3344444 57999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++++|||++++++++.+..|+.++.
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~i~ 99 (162)
T cd04123 75 GAILVYDITDADSFQKVKKWIKELK 99 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987764
No 112
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.82 E-value=1.3e-19 Score=117.39 Aligned_cols=95 Identities=25% Similarity=0.375 Sum_probs=80.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
.||+++|++|+|||||++++.+ +.+...+.||.+... ..+.+++ ..+.+||++|++.+.......+..+|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 75 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSK------DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 75 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhc------CCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCE
Confidence 5899999999999999999998 777777888887654 4555655 578999999999988888788899999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 95 VVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+++|||++++++|+.+. .|+..+.
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~~~~ 100 (175)
T cd01870 76 ILMCFSIDSPDSLENIPEKWTPEVK 100 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999985 5776553
No 113
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.82 E-value=2.4e-19 Score=118.77 Aligned_cols=95 Identities=18% Similarity=0.236 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc-eEEEEEEECC--eEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG-LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~-~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
||+++|++|+|||||+++++. +.+...+.+|.+ .....+.+.+ ..+.+||++|+..+...+..++..+|++
T Consensus 1 kv~vvG~~~vGKTsll~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~v 74 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLY------DTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAF 74 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEE
Confidence 689999999999999999998 666666667764 2334566666 6789999999999988888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHhhcc
Q 033349 96 VFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 96 i~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++|||++++++++++..|+..+++
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~i~~ 98 (198)
T cd04147 75 ALVYAVDDPESFEEVERLREEILE 98 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999887654
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=5.8e-19 Score=113.63 Aligned_cols=96 Identities=30% Similarity=0.551 Sum_probs=81.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..++++++|++|+|||||++++.. +.+...+.+|++... ..+.+.+ ..+.+||++|++.+...+..+++.
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 79 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQ------GLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRS 79 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcC
Confidence 468999999999999999999987 555556667776443 3456666 568999999999999988999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
+|++++|||++++++++.+..|+..+
T Consensus 80 ~d~~i~v~d~~~~~s~~~~~~~~~~l 105 (169)
T cd04114 80 ANALILTYDITCEESFRCLPEWLREI 105 (169)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHH
Confidence 99999999999999999999998765
No 115
>PLN03118 Rab family protein; Provisional
Probab=99.82 E-value=4.8e-19 Score=118.38 Aligned_cols=94 Identities=27% Similarity=0.529 Sum_probs=78.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
+..+||+++|++|+|||||++++.. +.+ ..+.+|.+... ..+.+++ ..+.+||+||++++...+..+++
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~------~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 84 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFIS------SSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYR 84 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHh------CCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh
Confidence 3579999999999999999999987 444 35677887654 4455555 57899999999999999999999
Q ss_pred ccCEEEEEEeCCCcccHHHHHH-HHH
Q 033349 91 EAHAVVFVIDAACPSRFEDSKT-ALG 115 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~-~l~ 115 (121)
.+|++++|||++++++|+++.. |..
T Consensus 85 ~~d~~vlv~D~~~~~sf~~~~~~~~~ 110 (211)
T PLN03118 85 NAQGIILVYDVTRRETFTNLSDVWGK 110 (211)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHH
Confidence 9999999999999999999976 543
No 116
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.82 E-value=9e-19 Score=113.21 Aligned_cols=98 Identities=39% Similarity=0.688 Sum_probs=84.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
..+.++++++|++|+|||||++++.+ ..+. .+.+|.|.+...+...+..+.+||++|+..+...+..+++.+|
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~------~~~~-~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~ 83 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLAS------EDIS-HITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTD 83 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhc------CCCc-ccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCC
Confidence 34689999999999999999999987 3332 4678888887788888899999999999988888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 94 AVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++++|+|++++.++.....|+..++
T Consensus 84 ~ii~v~D~~~~~~~~~~~~~~~~~~ 108 (173)
T cd04155 84 CLIYVIDSADKKRLEEAGAELVELL 108 (173)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998888877654
No 117
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=5.4e-19 Score=113.91 Aligned_cols=95 Identities=18% Similarity=0.209 Sum_probs=74.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE--CCeEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV--SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
+|++++|++|+|||||++++.. +.+...+.++.........+ .+..+.+||++|++.+...+..+++.+|++
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ 74 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVS------EEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVI 74 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEE
Confidence 4899999999999999999998 66655544433322222233 337899999999988888778888999999
Q ss_pred EEEEeCCCcccHHHHH-HHHHhhc
Q 033349 96 VFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 96 i~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
++|||++++++|+.+. .|+..+.
T Consensus 75 ilv~d~~~~~s~~~~~~~~~~~i~ 98 (166)
T cd01893 75 CLVYSVDRPSTLERIRTKWLPLIR 98 (166)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999985 5766553
No 118
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.81 E-value=2.6e-19 Score=115.84 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=79.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+||+++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+...+..+++.+|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 74 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYAN------DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 74 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCE
Confidence 5899999999999999999998 677767778776443 3455565 458899999999998888888999999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 95 VVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+++|||++++++|+++. .|+..+.
T Consensus 75 ~ilv~~~~~~~s~~~~~~~~~~~l~ 99 (174)
T cd04135 75 FLICFSVVNPASFQNVKEEWVPELK 99 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999999986 5766553
No 119
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.81 E-value=1.2e-19 Score=110.91 Aligned_cols=89 Identities=29% Similarity=0.487 Sum_probs=65.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCC--CcccC--CCceEEEEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPP--DRIVP--TVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~--~~~~~--t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
||+|+|++|+|||||+++|++ ..+. ....+ ............. ..+.+||++|++.+...+...+..+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 74 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCG------GEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKA 74 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHH------SS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHS
T ss_pred CEEEECcCCCCHHHHHHHHhc------CCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcC
Confidence 799999999999999999998 3333 11111 1122222333333 4589999999998887777779999
Q ss_pred CEEEEEEeCCCcccHHHHHHH
Q 033349 93 HAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~ 113 (121)
|++++|||+++++||+++.++
T Consensus 75 d~~ilv~D~s~~~s~~~~~~~ 95 (119)
T PF08477_consen 75 DAVILVYDLSDPESLEYLSQL 95 (119)
T ss_dssp CEEEEEEECCGHHHHHHHHHH
T ss_pred cEEEEEEcCCChHHHHHHHHH
Confidence 999999999999999998544
No 120
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.81 E-value=5.5e-19 Score=117.06 Aligned_cols=99 Identities=19% Similarity=0.196 Sum_probs=73.8
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhhccCCCCCCCCcccCCCce-E-EE-E--------EEECC--eEEEEEECCCCcchH
Q 033349 17 EFHVLILGIDKAGKTTLLE-KLKSVYSNVEGLPPDRIVPTVGL-N-IG-R--------IEVSN--SKLVFWDLGGQPGLR 82 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~-~~~~~~~~~~~~~~~~~~~t~~~-~-~~-~--------~~~~~--~~~~i~d~~g~~~~~ 82 (121)
.+||+++|++++|||||+. ++.+.. -..+.+...+.||++. . +. . ..+++ +.+++|||+|++.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~-~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~-- 78 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKT-LTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCC-cccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--
Confidence 5899999999999999995 554410 0113456678899863 2 11 1 13444 6799999999875
Q ss_pred HHHHHHhhccCEEEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
.....+++++|++++|||+++++||+++. .|+..+.
T Consensus 79 ~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~ 115 (195)
T cd01873 79 KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIR 115 (195)
T ss_pred hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHH
Confidence 24456789999999999999999999997 5988764
No 121
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.81 E-value=7.1e-19 Score=118.53 Aligned_cols=94 Identities=21% Similarity=0.187 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC-CcccCCCc--eEEEEEEECC--eEEEEEECCCCcchHHHHHHHhh-c
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVG--LNIGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE-E 91 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~-~~~~~t~~--~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~-~ 91 (121)
+||+++|++|+|||||+++|.. +.+. ..+.++.+ .....+.+++ ..+.+||++|++ ......++. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~------~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ 72 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTS------GEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQ 72 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhc------CCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcC
Confidence 5899999999999999999987 5554 56677775 3334555554 679999999998 333445666 8
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+|++++|||++|+++|+.+..|+..+..
T Consensus 73 ad~iilV~d~td~~S~~~~~~~~~~l~~ 100 (221)
T cd04148 73 GDAFVVVYSVTDRSSFERASELRIQLRR 100 (221)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999887654
No 122
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.80 E-value=9.6e-19 Score=111.75 Aligned_cols=96 Identities=16% Similarity=0.228 Sum_probs=81.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+||+++|++|+|||||++++.. ..+...+.++.+... .....++ ..+.+||+||+..+...+..+++.+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ 74 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMY------DEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEG 74 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCE
Confidence 5899999999999999999998 666666677766544 2334444 679999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++|+|++++++|.....|+..+..
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~ 99 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILR 99 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998887654
No 123
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.79 E-value=2.1e-18 Score=109.68 Aligned_cols=95 Identities=20% Similarity=0.272 Sum_probs=79.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
||+++|++|+|||||++++.. ..+...+.++.+... ..+...+ ..+.+||+||++.+...+..+++.+|++
T Consensus 1 ki~i~G~~~~GKTsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~ 74 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVK------GTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGF 74 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHh------CCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEE
Confidence 689999999999999999987 556666677766332 3444553 6789999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHhhcc
Q 033349 96 VFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 96 i~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++|||+++++++.++..|...+.+
T Consensus 75 i~v~d~~~~~s~~~~~~~~~~~~~ 98 (160)
T cd00876 75 ILVYSITDRESFEEIKGYREQILR 98 (160)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999988877653
No 124
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.79 E-value=2.3e-18 Score=112.12 Aligned_cols=96 Identities=22% Similarity=0.238 Sum_probs=81.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE-EEEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
.||+++|++|+|||||++++.. +.+...+.||.+.. .....+++ ..+.+||+||++++...+..++..+++
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~ 75 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE------GHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHG 75 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCE
Confidence 5899999999999999999998 66666677777643 34455555 567999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+++|||+++.++++.+..|+..+++
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~ 100 (180)
T cd04137 76 YILVYSVTSRKSFEVVKVIYDKILD 100 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877754
No 125
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.6e-19 Score=112.24 Aligned_cols=114 Identities=36% Similarity=0.594 Sum_probs=103.0
Q ss_pred ChhhHHHHHhhhccC-ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc
Q 033349 1 MFSLFYGLWKYIFTK-TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 79 (121)
|+..+.++|..+... ++.+++++|..|+|||+++.++-- +.. ....||+|++.+.+.++|.++++||+.|+.
T Consensus 1 m~~g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqv------gev-vttkPtigfnve~v~yKNLk~~vwdLggqt 73 (182)
T KOG0072|consen 1 MGGGFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQV------GEV-VTTKPTIGFNVETVPYKNLKFQVWDLGGQT 73 (182)
T ss_pred CCchHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEccc------Ccc-cccCCCCCcCccccccccccceeeEccCcc
Confidence 788899999998876 899999999999999999988743 222 367799999999999999999999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccCC
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSSE 121 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~~ 121 (121)
.+++.|+-++.+.|++|+|+|.+|+..+..+...+..++.|+
T Consensus 74 SirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~ 115 (182)
T KOG0072|consen 74 SIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEE 115 (182)
T ss_pred cccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccH
Confidence 999999999999999999999999999999999998888764
No 126
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.79 E-value=2.2e-18 Score=110.96 Aligned_cols=95 Identities=26% Similarity=0.415 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
+||+++|++|+|||||++++.. +.+...+.++..... ......+ ..+++||+||++++.......++.+|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~ 74 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTT------GKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDV 74 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHh------CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCE
Confidence 5899999999999999999998 555556666665433 2334444 679999999999887777888899999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHhhc
Q 033349 95 VVFVIDAACPSRFEDSK-TALGKKG 118 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~l~~i~ 118 (121)
+++|||++++++|.++. .|+..+.
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~ 99 (171)
T cd00157 75 FLICFSVDSPSSFENVKTKWIPEIR 99 (171)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHH
Confidence 99999999999998875 4666543
No 127
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.79 E-value=9e-19 Score=116.03 Aligned_cols=98 Identities=21% Similarity=0.320 Sum_probs=89.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
..+|++++|.+|+|||+|+.+|.. +.|...|.||++..+ ..+.+++ ..+.++|++|++++......++++.
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~------~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~ 75 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLT------GRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNG 75 (196)
T ss_pred CceEEEEECCCCCCcchheeeecc------cccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccC
Confidence 468999999999999999999999 999999999999654 5566666 6799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
|++++||+++|+.||+.+..+..+|+.
T Consensus 76 ~gF~lVysitd~~SF~~~~~l~~~I~r 102 (196)
T KOG0395|consen 76 DGFLLVYSITDRSSFEEAKQLREQILR 102 (196)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998843
No 128
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.79 E-value=7.9e-20 Score=119.91 Aligned_cols=99 Identities=23% Similarity=0.385 Sum_probs=88.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEEC-C--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS-N--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+|+++||+.++|||+|+..+.. +.|+..|.||+--++ ..+.++ + +.+.+|||+||++|..++...+..
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~------~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~ 76 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTT------NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQ 76 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEecc------CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCC
Confidence 468999999999999999999998 899999999999665 456674 5 779999999999999988888999
Q ss_pred cCEEEEEEeCCCcccHHHHH-HHHHhhccC
Q 033349 92 AHAVVFVIDAACPSRFEDSK-TALGKKGSS 120 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~-~~l~~i~~~ 120 (121)
+|.+++||++.+|+||+++. +|+.++..+
T Consensus 77 tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~ 106 (198)
T KOG0393|consen 77 TDVFLLCFSVVSPESFENVKSKWIPEIKHH 106 (198)
T ss_pred CCEEEEEEEcCChhhHHHHHhhhhHHHHhh
Confidence 99999999999999999985 799987653
No 129
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.78 E-value=8e-20 Score=115.34 Aligned_cols=97 Identities=21% Similarity=0.351 Sum_probs=82.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
-.+|++++|..=+|||||+-+++. ..|..+..+|+-.. ...+.+.+ .++.+|||+||+++..+-+-+++.
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~E------nkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg 85 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYVE------NKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG 85 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHHH------hhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence 479999999999999999999988 66666655555432 23444444 679999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++++++|||++|++||+.++.|..++.
T Consensus 86 SnGalLVyDITDrdSFqKVKnWV~Elr 112 (218)
T KOG0088|consen 86 SNGALLVYDITDRDSFQKVKNWVLELR 112 (218)
T ss_pred CCceEEEEeccchHHHHHHHHHHHHHH
Confidence 999999999999999999999998865
No 130
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.78 E-value=3.6e-18 Score=114.29 Aligned_cols=98 Identities=32% Similarity=0.462 Sum_probs=81.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC----CeEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+||+++|++|+|||||++++.. ..+...+.+|++......... ...+.+||++|+++++.++..++..
T Consensus 4 ~~~kivv~G~~g~GKTtl~~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~ 77 (219)
T COG1100 4 KEFKIVVLGDGGVGKTTLLNRLVG------DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRG 77 (219)
T ss_pred ceEEEEEEcCCCccHHHHHHHHhc------CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcC
Confidence 348999999999999999999999 888888889888665433332 3669999999999999999999999
Q ss_pred cCEEEEEEeCCCccc-HHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSR-FEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s-~~~~~~~l~~i~~ 119 (121)
++++++|||.++.++ ++....|+..+..
T Consensus 78 ~~~~l~~~d~~~~~~~~~~~~~~~~~l~~ 106 (219)
T COG1100 78 ANGILIVYDSTLRESSDELTEEWLEELRE 106 (219)
T ss_pred CCEEEEEEecccchhhhHHHHHHHHHHHH
Confidence 999999999999544 5555678877654
No 131
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=3.9e-18 Score=106.11 Aligned_cols=96 Identities=28% Similarity=0.408 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+|..++|+-|+|||.|+++|.. ..|-...+.|+|++. ..+++.+ +.+++||+.|+++++.+.+.+++.+
T Consensus 11 ifkyiiigdmgvgkscllhqfte------kkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrga 84 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTE------KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGA 84 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHH------HHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 68999999999999999999998 777778889999885 3455666 7899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 93 HAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
.++++|||++.+.+++.+..|+....
T Consensus 85 agalmvyditrrstynhlsswl~dar 110 (215)
T KOG0097|consen 85 AGALMVYDITRRSTYNHLSSWLTDAR 110 (215)
T ss_pred cceeEEEEehhhhhhhhHHHHHhhhh
Confidence 99999999999999999999998653
No 132
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=6.7e-20 Score=115.75 Aligned_cols=98 Identities=23% Similarity=0.443 Sum_probs=86.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC-----------eEEEEEECCCCcchHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN-----------SKLVFWDLGGQPGLRS 83 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~-----------~~~~i~d~~g~~~~~~ 83 (121)
-+|++.+|++|+|||++++++.. +.|.....+|+|... .++.++. +.+++|||+||+++++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD------~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTD------GKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecC------CcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHH
Confidence 36789999999999999999998 889889999999764 3343331 5799999999999999
Q ss_pred HHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 84 IWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+...+++.+-+++++||+++..||-++..|+.++..|
T Consensus 83 LTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~h 119 (219)
T KOG0081|consen 83 LTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTH 119 (219)
T ss_pred HHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999987543
No 133
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.76 E-value=1e-17 Score=110.02 Aligned_cols=96 Identities=25% Similarity=0.394 Sum_probs=78.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
.|++++|++|+|||||++++.. +.+...+.+|.+... ..+.+++ ..+.+||++|++.+....+.+++++|+
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~ 75 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTL------GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHV 75 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHh------CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCE
Confidence 5899999999999999999987 666666677766543 3455555 568999999998877666677899999
Q ss_pred EEEEEeCCCcccHHHHH-HHHHhhcc
Q 033349 95 VVFVIDAACPSRFEDSK-TALGKKGS 119 (121)
Q Consensus 95 ii~v~d~~~~~s~~~~~-~~l~~i~~ 119 (121)
+++|||++++++|+++. .|+..+..
T Consensus 76 ~llv~~i~~~~s~~~~~~~~~~~i~~ 101 (187)
T cd04129 76 ILIGFAVDTPDSLENVRTKWIEEVRR 101 (187)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 58887653
No 134
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.76 E-value=1.3e-17 Score=111.02 Aligned_cols=94 Identities=27% Similarity=0.391 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC----CeEEEEEECCCCcchHHHHHHHhhcc-C
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEA-H 93 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~-~ 93 (121)
+|+++|++++|||+|++++.. +.+...+.++ ..+...+... +..+.+||+||+.+++..+..+++.+ +
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~------~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~ 74 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTT------GKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAK 74 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhc------CCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCC
Confidence 589999999999999999988 5555444333 3333333332 57799999999999999888999998 9
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAACP-SRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~~~-~s~~~~~~~l~~i~~ 119 (121)
++|+|+|+++. +++.++..|+..++.
T Consensus 75 ~vV~VvD~~~~~~~~~~~~~~l~~il~ 101 (203)
T cd04105 75 GIVFVVDSATFQKNLKDVAEFLYDILT 101 (203)
T ss_pred EEEEEEECccchhHHHHHHHHHHHHHH
Confidence 99999999997 789998888877653
No 135
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.73 E-value=1.4e-18 Score=107.00 Aligned_cols=92 Identities=32% Similarity=0.561 Sum_probs=78.8
Q ss_pred EEEcCCCCCHHHHHHHHHhhccCCCCCCC-CcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPP-DRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 21 ~vvG~~~~GKTsl~~~~~~~~~~~~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
+++|++++|||.|+-+|.. +.|. ....+|+|..+ ..+..++ +.+++|||.||++++++...+++.+|++
T Consensus 1 mllgds~~gktcllir~kd------gafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~al 74 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKD------GAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADAL 74 (192)
T ss_pred CccccCccCceEEEEEecc------CceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhccccee
Confidence 3689999999999988866 5444 34568888775 3455555 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHhhc
Q 033349 96 VFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 96 i~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++||+.++.||++.+.|+.+|-
T Consensus 75 lllydiankasfdn~~~wlsei~ 97 (192)
T KOG0083|consen 75 LLLYDIANKASFDNCQAWLSEIH 97 (192)
T ss_pred eeeeecccchhHHHHHHHHHHHH
Confidence 99999999999999999999874
No 136
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.71 E-value=2.2e-18 Score=110.89 Aligned_cols=99 Identities=21% Similarity=0.417 Sum_probs=88.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE----EEEECCeEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG----RIEVSNSKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..+|++++|..++||||++++++. +.|...+..|+|+... .+...++.+.+||++|++++..+.+.+++.
T Consensus 19 ~aiK~vivGng~VGKssmiqryCk------gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrg 92 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCK------GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRG 92 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhc------cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhcc
Confidence 469999999999999999999999 9999999999998743 233344778999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhccC
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGSS 120 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~~ 120 (121)
+.+-++||+-+|+.||+....|..++-++
T Consensus 93 aqa~vLVFSTTDr~SFea~~~w~~kv~~e 121 (246)
T KOG4252|consen 93 AQASVLVFSTTDRYSFEATLEWYNKVQKE 121 (246)
T ss_pred ccceEEEEecccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999987543
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.68 E-value=1e-15 Score=98.44 Aligned_cols=96 Identities=26% Similarity=0.326 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCe-EEEEEECCCCc----c---hHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQP----G---LRSIWEKYYE 90 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~d~~g~~----~---~~~~~~~~~~ 90 (121)
.|+++|.+|+|||||++++.+.... ......+|.......+.+.+. .+.+|||||.. . +...+...+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~----v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK----IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIE 77 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcc----ccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHH
Confidence 5899999999999999999862111 011112334444445556665 89999999953 1 2222223345
Q ss_pred ccCEEEEEEeCCCc-ccHHHHHHHHHhhc
Q 033349 91 EAHAVVFVIDAACP-SRFEDSKTALGKKG 118 (121)
Q Consensus 91 ~~~~ii~v~d~~~~-~s~~~~~~~l~~i~ 118 (121)
.+|++++|+|++++ ++++.+..|+..+.
T Consensus 78 ~~d~vi~v~D~~~~~~~~~~~~~~~~~l~ 106 (170)
T cd01898 78 RTRLLLHVIDLSGDDDPVEDYKTIRNELE 106 (170)
T ss_pred hCCEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 79999999999999 78988888877654
No 138
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.68 E-value=1.5e-15 Score=95.46 Aligned_cols=95 Identities=25% Similarity=0.298 Sum_probs=75.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEE--EEECC--eEEEEEECCCCcchHHHHHHHhhcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR--IEVSN--SKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~--~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+||+++|.+|+|||||++++.. ..+...+.++.+..... +..++ ..+.+||+||+.++...+...++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 74 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLG------NKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAV 74 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC------CCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhh
Confidence 37999999999999999999988 44555666666665533 56677 7789999999999998888888999
Q ss_pred CEEEEEEeCCCc-ccHHHHH-HHHHhh
Q 033349 93 HAVVFVIDAACP-SRFEDSK-TALGKK 117 (121)
Q Consensus 93 ~~ii~v~d~~~~-~s~~~~~-~~l~~i 117 (121)
+.++.++|+... .++.+.. .|+..+
T Consensus 75 ~~~i~~~d~~~~v~~~~~~~~~~~~~~ 101 (161)
T TIGR00231 75 ESSLRVFDIVILVLDVEEILEKQTKEI 101 (161)
T ss_pred hEEEEEEEEeeeehhhhhHhHHHHHHH
Confidence 999999998877 6666665 555443
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.67 E-value=1e-15 Score=97.69 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=61.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcc--cCCCceEEEEEEEC-CeEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI--VPTVGLNIGRIEVS-NSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~--~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
-|+++|.+++|||||++++++.. . ..+..++ ..|++.....+.+. +..+.+|||||++++.......++.+|++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~--~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE--T-DRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc--c-ccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 58999999999999999998511 0 1222222 23444444455565 67899999999998877666778899999
Q ss_pred EEEEeCCC
Q 033349 96 VFVIDAAC 103 (121)
Q Consensus 96 i~v~d~~~ 103 (121)
++|+|+++
T Consensus 79 i~V~d~~~ 86 (164)
T cd04171 79 LLVVAADE 86 (164)
T ss_pred EEEEECCC
Confidence 99999987
No 140
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.64 E-value=5.4e-15 Score=95.96 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=67.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC-CCCCCcccCCC------ceEE----EEEEE-----CCeEEEEEECCCCcchH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVE-GLPPDRIVPTV------GLNI----GRIEV-----SNSKLVFWDLGGQPGLR 82 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~-~~~~~~~~~t~------~~~~----~~~~~-----~~~~~~i~d~~g~~~~~ 82 (121)
+|+++|++++|||||+++|+....... ..+...+.++. |... ..+.+ .+..+.+|||||++++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 589999999999999999987321110 11222333332 2221 12222 24678999999999999
Q ss_pred HHHHHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 83 SIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
..+..+++.+|++++|+|++++.+++....|.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~ 113 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY 113 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH
Confidence 99999999999999999999877666665543
No 141
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.62 E-value=9.1e-15 Score=97.08 Aligned_cols=94 Identities=24% Similarity=0.318 Sum_probs=66.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcc---------hHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG---------LRSIW 85 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~---------~~~~~ 85 (121)
..++|+++|++|+|||||++++.+. . ....+...+|.......+.+.+ ..+.+||+||... +...+
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~--~--~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 115 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGA--D--VYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL 115 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcc--h--hccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH
Confidence 3589999999999999999999872 1 0111233456665555666666 4899999999621 22222
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
..+..+|++++|+|++++.++.....|.
T Consensus 116 -~~~~~~d~ii~v~D~~~~~~~~~~~~~~ 143 (204)
T cd01878 116 -EEVAEADLLLHVVDASDPDYEEQIETVE 143 (204)
T ss_pred -HHHhcCCeEEEEEECCCCChhhHHHHHH
Confidence 2356899999999999998887765444
No 142
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.62 E-value=1.4e-14 Score=93.10 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=63.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC--cccCCCceEEEEEEECCeEEEEEECCCCcc------h---HHHHHH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG------L---RSIWEK 87 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~------~---~~~~~~ 87 (121)
+|+++|++|+|||||++++.+ ..+.. ....|.+........++..+.+|||||... . ......
T Consensus 2 ~i~~~G~~~~GKssli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 75 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTR------AKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA 75 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhc------CCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH
Confidence 689999999999999999987 32221 122355666556666778999999999731 1 011111
Q ss_pred HhhccCEEEEEEeCCCccc--HHHHHHHHHhhc
Q 033349 88 YYEEAHAVVFVIDAACPSR--FEDSKTALGKKG 118 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s--~~~~~~~l~~i~ 118 (121)
....+|++++|+|++++.+ ++....|+..+.
T Consensus 76 ~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~ 108 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIK 108 (168)
T ss_pred HHhccCcEEEEEeCCcccccchHHHHHHHHHHH
Confidence 1123689999999998765 466666776653
No 143
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.62 E-value=1.5e-14 Score=95.56 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=62.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCC------C--CcccCCCce----EEEEEEECCeEEEEEECCCCcchHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLP------P--DRIVPTVGL----NIGRIEVSNSKLVFWDLGGQPGLRSIW 85 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~------~--~~~~~t~~~----~~~~~~~~~~~~~i~d~~g~~~~~~~~ 85 (121)
-+|+++|.+++|||||+++++...+...... . ....++.|. ....+...+..+.+||+||++++....
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4799999999999999999986211110000 0 001122332 223455667889999999999999999
Q ss_pred HHHhhccCEEEEEEeCCCc
Q 033349 86 EKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~ 104 (121)
..+++.+|++++|+|+++.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~ 101 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEG 101 (194)
T ss_pred HHHHHhcCEEEEEEECCCC
Confidence 9999999999999999874
No 144
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.62 E-value=1.6e-14 Score=105.91 Aligned_cols=97 Identities=23% Similarity=0.246 Sum_probs=69.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC-CCceEEEEEEECCeEEEEEECCCCcchHHH--------H
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP-TVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------W 85 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~ 85 (121)
+..++++++|++|+|||||++++++.. ......+.. |.......+.+++.++.+|||||....... .
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~----~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~ 276 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQD----RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKS 276 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCC----CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHH
Confidence 467999999999999999999998721 111122222 223334567788889999999998544322 2
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
..+++.+|++++|+|++++.+++.. |+..+
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~ 306 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDL 306 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH--HHHHH
Confidence 3567899999999999999887765 66654
No 145
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.61 E-value=2.4e-15 Score=94.42 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=56.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc-----chHHHHHHHhhccC
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-----GLRSIWEKYYEEAH 93 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~-----~~~~~~~~~~~~~~ 93 (121)
||+++|++|+|||||++++.+ ..+ .+.+|.+.. +.. .+||+||+. .+..... .++++|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~------~~~--~~~~t~~~~-----~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad 64 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQG------EEI--LYKKTQAVE-----YND---GAIDTPGEYVENRRLYSALIV-TAADAD 64 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcC------Ccc--ccccceeEE-----EcC---eeecCchhhhhhHHHHHHHHH-HhhcCC
Confidence 899999999999999999987 332 234554432 222 689999972 2333333 478999
Q ss_pred EEEEEEeCCCcccHHHHHHHH
Q 033349 94 AVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l 114 (121)
++++|||++++.++.. ..|+
T Consensus 65 ~vilv~d~~~~~s~~~-~~~~ 84 (142)
T TIGR02528 65 VIALVQSATDPESRFP-PGFA 84 (142)
T ss_pred EEEEEecCCCCCcCCC-hhHH
Confidence 9999999999988755 2444
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.60 E-value=1.8e-14 Score=92.44 Aligned_cols=80 Identities=19% Similarity=0.210 Sum_probs=60.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCccc--CCCceEEEEEEEC---CeEEEEEECCCCcchHHHHHHHhhccC
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV--PTVGLNIGRIEVS---NSKLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~--~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.|+++|++|+|||||++++.. +.+..... .|.......+... +..+.+|||||++.+...+...+..+|
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d 75 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRK------TNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTD 75 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHh------cccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcC
Confidence 389999999999999999987 43333222 2222222334443 578999999999998888888889999
Q ss_pred EEEEEEeCCCc
Q 033349 94 AVVFVIDAACP 104 (121)
Q Consensus 94 ~ii~v~d~~~~ 104 (121)
++++|+|+++.
T Consensus 76 ~il~v~d~~~~ 86 (168)
T cd01887 76 IAILVVAADDG 86 (168)
T ss_pred EEEEEEECCCC
Confidence 99999999874
No 147
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.60 E-value=2.7e-14 Score=101.52 Aligned_cols=98 Identities=24% Similarity=0.331 Sum_probs=73.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE-CCeEEEEEECCCCc-------chHHHHHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQP-------GLRSIWEKY 88 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~~-------~~~~~~~~~ 88 (121)
...|+++|.+++|||||+++++...... .+....|..++...+.+ ++.++.+||+||.- .+...+..+
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~v----a~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrh 233 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKI----ADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKH 233 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCcc----CCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHH
Confidence 3568999999999999999998732221 11223566666666777 44789999999852 234445556
Q ss_pred hhccCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
++.++++++|+|++++++++++..|..++.
T Consensus 234 ie~a~vlI~ViD~s~~~s~e~~~~~~~EL~ 263 (335)
T PRK12299 234 IERTRLLLHLVDIEAVDPVEDYKTIRNELE 263 (335)
T ss_pred hhhcCEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 678999999999999888999988887764
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.59 E-value=3.2e-14 Score=101.72 Aligned_cols=90 Identities=24% Similarity=0.366 Sum_probs=68.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--CCcccCCCceEEEEEEE-CCeEEEEEECCCC-c--------chHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--PDRIVPTVGLNIGRIEV-SNSKLVFWDLGGQ-P--------GLRSI 84 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~--~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g~-~--------~~~~~ 84 (121)
..+|+++|.+|+|||||++++++ ... .+...+|..+....+.+ ++..+.+|||+|. . .+...
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~------~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t 262 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTG------ADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT 262 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC------CceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH
Confidence 48999999999999999999987 221 23445677777777777 4588999999996 2 23222
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHHHH
Q 033349 85 WEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 113 (121)
+ ..+.++|++++|+|++++.++++...|
T Consensus 263 l-e~~~~ADlil~VvD~s~~~~~~~~~~~ 290 (351)
T TIGR03156 263 L-EEVREADLLLHVVDASDPDREEQIEAV 290 (351)
T ss_pred H-HHHHhCCEEEEEEECCCCchHHHHHHH
Confidence 2 246799999999999999887766443
No 149
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.59 E-value=1.3e-15 Score=96.00 Aligned_cols=98 Identities=22% Similarity=0.372 Sum_probs=86.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC--eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN--SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
-.+|+.++|++..|||||+-.+.+ +.+.+++..+.|++. ..+.+.+ +.+.+||++|++++...++-.+..
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~------~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~d 92 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQ------NEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKD 92 (205)
T ss_pred eEEEEEeecccccCceeeehhhhc------chhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecC
Confidence 579999999999999999999988 667678888999885 4566666 678999999999999999999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+-+++|+||++.+++++.++.|+.+-+.
T Consensus 93 svaIlFmFDLt~r~TLnSi~~WY~QAr~ 120 (205)
T KOG1673|consen 93 SVAILFMFDLTRRSTLNSIKEWYRQARG 120 (205)
T ss_pred cEEEEEEEecCchHHHHHHHHHHHHHhc
Confidence 9999999999999999999999988653
No 150
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.59 E-value=1.5e-14 Score=93.35 Aligned_cols=93 Identities=24% Similarity=0.327 Sum_probs=64.7
Q ss_pred EEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC-CeEEEEEECCCCcc-------hHHHHHHHhhccC
Q 033349 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPG-------LRSIWEKYYEEAH 93 (121)
Q Consensus 22 vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~-------~~~~~~~~~~~~~ 93 (121)
++|++|+|||||++++.+... .......+|..+....+.++ +..+.+||+||... ....+...++.+|
T Consensus 1 iiG~~~~GKStll~~l~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d 76 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP----KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRAD 76 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc----cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccC
Confidence 589999999999999987210 01122234455555556677 78899999999632 1112334567899
Q ss_pred EEEEEEeCCCc------ccHHHHHHHHHhhc
Q 033349 94 AVVFVIDAACP------SRFEDSKTALGKKG 118 (121)
Q Consensus 94 ~ii~v~d~~~~------~s~~~~~~~l~~i~ 118 (121)
++++|+|.+++ .++++...|...+.
T Consensus 77 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 107 (176)
T cd01881 77 AILHVVDASEDDDIGGVDPLEDYEILNAELK 107 (176)
T ss_pred EEEEEEeccCCccccccCHHHHHHHHHHHHH
Confidence 99999999998 56877777766654
No 151
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.58 E-value=4.1e-15 Score=97.06 Aligned_cols=94 Identities=30% Similarity=0.421 Sum_probs=66.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE---CCeEEEEEECCCCcchHHHHHH---Hhhc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---SNSKLVFWDLGGQPGLRSIWEK---YYEE 91 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~d~~g~~~~~~~~~~---~~~~ 91 (121)
-.++++|++|+|||+|..++.. +.....+.+ +..+.. ..+ .+..+.++|+|||.+++..... ++..
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~------~~~~~T~tS-~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~ 75 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVN------GKTVPTVTS-MENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSN 75 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHH------SS---B----SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGG
T ss_pred ceEEEEcCCCCCHHHHHHHHhc------CCcCCeecc-ccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhh
Confidence 3589999999999999999998 544444333 333332 223 2367999999999998874444 4789
Q ss_pred cCEEEEEEeCC-CcccHHHHHHHHHhhcc
Q 033349 92 AHAVVFVIDAA-CPSRFEDSKTALGKKGS 119 (121)
Q Consensus 92 ~~~ii~v~d~~-~~~s~~~~~~~l~~i~~ 119 (121)
+.++|||+|.+ ++..+.++++.|+.++.
T Consensus 76 ~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~ 104 (181)
T PF09439_consen 76 AKGIIFVVDSSTDQKELRDVAEYLYDILS 104 (181)
T ss_dssp EEEEEEEEETTTHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCccchhhHHHHHHHHHHHHH
Confidence 99999999987 46678889999888874
No 152
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=8.2e-15 Score=93.20 Aligned_cols=97 Identities=34% Similarity=0.559 Sum_probs=85.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
+.-|++++|..++|||||++.+.. ++ .....||.-+..+...+.+.+++.+|.+|+...+..|+.++-.+|++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKd--Dr-----l~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~i 91 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKD--DR-----LGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAI 91 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHcc--cc-----ccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhcee
Confidence 467999999999999999999876 22 23667888888888999999999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHhhcc
Q 033349 96 VFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 96 i~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
++.+|+.|++.|.+++..++.++.
T Consensus 92 v~lvda~d~er~~es~~eld~ll~ 115 (193)
T KOG0077|consen 92 VYLVDAYDQERFAESKKELDALLS 115 (193)
T ss_pred EeeeehhhHHHhHHHHHHHHHHHh
Confidence 999999999999999888776553
No 153
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.57 E-value=1.8e-14 Score=89.51 Aligned_cols=85 Identities=31% Similarity=0.528 Sum_probs=67.5
Q ss_pred EEcCCCCCHHHHHHHHHhhccCCCCCC-CCcccCCCceEEEEEEEC----CeEEEEEECCCCcchHHHHHHHhhccCEEE
Q 033349 22 ILGIDKAGKTTLLEKLKSVYSNVEGLP-PDRIVPTVGLNIGRIEVS----NSKLVFWDLGGQPGLRSIWEKYYEEAHAVV 96 (121)
Q Consensus 22 vvG~~~~GKTsl~~~~~~~~~~~~~~~-~~~~~~t~~~~~~~~~~~----~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii 96 (121)
++|++|+|||||++++.. ... .....+|. .+....... +..+.+||+||...+.......++.+|+++
T Consensus 1 iiG~~~~GKStl~~~l~~------~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 73 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLG------GEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGII 73 (157)
T ss_pred CCCcCCCcHHHHHHHHHh------CCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEE
Confidence 589999999999999987 333 33444554 444443333 577999999999888877788889999999
Q ss_pred EEEeCCCcccHHHHHHH
Q 033349 97 FVIDAACPSRFEDSKTA 113 (121)
Q Consensus 97 ~v~d~~~~~s~~~~~~~ 113 (121)
+|+|.+++.++..+..|
T Consensus 74 ~v~d~~~~~~~~~~~~~ 90 (157)
T cd00882 74 LVYDVTDRESFENVKEW 90 (157)
T ss_pred EEEECcCHHHHHHHHHH
Confidence 99999999999888876
No 154
>PRK15494 era GTPase Era; Provisional
Probab=99.57 E-value=4.9e-14 Score=100.44 Aligned_cols=92 Identities=21% Similarity=0.338 Sum_probs=62.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc-hH-------HHHH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-LR-------SIWE 86 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-~~-------~~~~ 86 (121)
+...+++++|.+|+|||||++++.+. .. .........|.......+..++.++.+|||||..+ +. ....
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~--k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~ 126 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGE--KL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAW 126 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCC--ce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHH
Confidence 35679999999999999999999872 11 01112333454444456677888999999999742 21 1122
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHH
Q 033349 87 KYYEEAHAVVFVIDAACPSRFEDSK 111 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~~~~ 111 (121)
..+..+|++++|+|..+ ++.+..
T Consensus 127 ~~l~~aDvil~VvD~~~--s~~~~~ 149 (339)
T PRK15494 127 SSLHSADLVLLIIDSLK--SFDDIT 149 (339)
T ss_pred HHhhhCCEEEEEEECCC--CCCHHH
Confidence 34679999999999765 444443
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.56 E-value=1.3e-13 Score=87.16 Aligned_cols=93 Identities=26% Similarity=0.261 Sum_probs=63.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHH--------HHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYY 89 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~ 89 (121)
++|+++|++|+|||||++++...... ........+.......+...+..+.+||+||...... .....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRA---IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceE---eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 58999999999999999999872100 0111112233333445666778899999999654321 223456
Q ss_pred hccCEEEEEEeCCCcccHHHHHHH
Q 033349 90 EEAHAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~~~~~~~ 113 (121)
..+|++++|+|++++.+......+
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~ 102 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEIL 102 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHH
Confidence 799999999999998887776544
No 156
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.56 E-value=9.3e-14 Score=102.25 Aligned_cols=97 Identities=25% Similarity=0.247 Sum_probs=69.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHH--------HH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI--------WE 86 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~--------~~ 86 (121)
+..++++++|.+|+|||||++++++.... ...+....|.......+.+++.++.+|||||.++.... ..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a---~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERA---IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCc---ccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 35689999999999999999999872100 01112223444445667778889999999997644321 23
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 87 KYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
..++.+|++++|+|++++.++++...|.
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~ 317 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILE 317 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHH
Confidence 3568999999999999998887665443
No 157
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.55 E-value=1.4e-13 Score=97.68 Aligned_cols=97 Identities=24% Similarity=0.324 Sum_probs=69.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCc-------chHHHHHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQP-------GLRSIWEKY 88 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~-------~~~~~~~~~ 88 (121)
...|+++|.+++|||||+++++....... +....|..++...+.+.+ ..+.+||+||.. .+...+...
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va----~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrh 232 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIA----DYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKH 232 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCcccc----CCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHH
Confidence 46799999999999999999987322211 112345555666667776 889999999963 233444455
Q ss_pred hhccCEEEEEEeCCCc---ccHHHHHHHHHhh
Q 033349 89 YEEAHAVVFVIDAACP---SRFEDSKTALGKK 117 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~---~s~~~~~~~l~~i 117 (121)
++.++++++|+|+++. ++++++..|..++
T Consensus 233 ierad~ll~VvD~s~~~~~~~~e~l~~l~~EL 264 (329)
T TIGR02729 233 IERTRVLLHLIDISPLDGRDPIEDYEIIRNEL 264 (329)
T ss_pred HHhhCEEEEEEcCccccccCHHHHHHHHHHHH
Confidence 6789999999999986 6677777776654
No 158
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.55 E-value=1.6e-13 Score=93.25 Aligned_cols=93 Identities=27% Similarity=0.281 Sum_probs=65.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchH-------HHHHHHhhc
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------SIWEKYYEE 91 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~ 91 (121)
+++++|++|+|||||++++.+..... .....+|..+....+.+++..+++||+||..+.. ......+++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v----~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV----AAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc----cCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 78999999999999999999732111 1122345555556677888999999999964321 233456789
Q ss_pred cCEEEEEEeCCCcc-cHHHHHHHHH
Q 033349 92 AHAVVFVIDAACPS-RFEDSKTALG 115 (121)
Q Consensus 92 ~~~ii~v~d~~~~~-s~~~~~~~l~ 115 (121)
+|++++|+|+++++ ..+.+.+.+.
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~ 102 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELE 102 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHH
Confidence 99999999998865 3444444443
No 159
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.54 E-value=2.1e-13 Score=100.94 Aligned_cols=91 Identities=23% Similarity=0.178 Sum_probs=63.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc--------hHHHHH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWE 86 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~ 86 (121)
....+|+++|.+|+|||||++++++..... .......|.......+.+.+..+.+|||||.+. +.....
T Consensus 36 ~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~---v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~ 112 (472)
T PRK03003 36 GPLPVVAVVGRPNVGKSTLVNRILGRREAV---VEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAE 112 (472)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCcCccc---ccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHH
Confidence 456789999999999999999998721100 011111122223445666788899999999752 334456
Q ss_pred HHhhccCEEEEEEeCCCcccHH
Q 033349 87 KYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
.+++.+|++++|+|+++..++.
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~ 134 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATAT 134 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHH
Confidence 6788999999999999876643
No 160
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.53 E-value=2.5e-13 Score=88.40 Aligned_cols=90 Identities=23% Similarity=0.217 Sum_probs=63.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCC------------CCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLP------------PDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~------------~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 86 (121)
+|+++|.+|+|||||+++++.......... ......+.......+...+..+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 489999999999999999987211110000 00011222223344555678899999999998888888
Q ss_pred HHhhccCEEEEEEeCCCcccHH
Q 033349 87 KYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
.+++.+|++++|+|++++.+..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~ 102 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ 102 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH
Confidence 8899999999999998865443
No 161
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.53 E-value=3.2e-13 Score=98.95 Aligned_cols=96 Identities=27% Similarity=0.296 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc--------hHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--------LRSIWEKYY 89 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~--------~~~~~~~~~ 89 (121)
.+|+++|.+|+|||||++++.+.... ...+....|.......+.+.+..+.+|||||.+. +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~---~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDA---IVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce---eeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 57999999999999999999872110 0111222344445566778889999999999876 333445667
Q ss_pred hccCEEEEEEeCCCcccH--HHHHHHHHh
Q 033349 90 EEAHAVVFVIDAACPSRF--EDSKTALGK 116 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s~--~~~~~~l~~ 116 (121)
..+|++++|+|..++.+. ..+.+|+.+
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~l~~ 107 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKILRK 107 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999886443 334456543
No 162
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.52 E-value=8.7e-13 Score=80.35 Aligned_cols=83 Identities=23% Similarity=0.320 Sum_probs=57.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc---------hHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKYY 89 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~~ 89 (121)
||+++|.+|+|||||++++++.. . .........|.......+.+++..+.++|+||-.. ........+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~--~-~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK--L-AKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST--S-SEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc--c-ccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 68999999999999999999721 1 11222334455555566778888889999999421 111233334
Q ss_pred hccCEEEEEEeCCCc
Q 033349 90 EEAHAVVFVIDAACP 104 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~ 104 (121)
..+|++++|+|..++
T Consensus 78 ~~~d~ii~vv~~~~~ 92 (116)
T PF01926_consen 78 SKSDLIIYVVDASNP 92 (116)
T ss_dssp CTESEEEEEEETTSH
T ss_pred HHCCEEEEEEECCCC
Confidence 789999999997774
No 163
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.52 E-value=1.6e-13 Score=87.14 Aligned_cols=81 Identities=25% Similarity=0.284 Sum_probs=58.5
Q ss_pred EEcCCCCCHHHHHHHHHhhccCCCCCCCC--cccCCCceEEEEEEECCeEEEEEECCCCcchHH------HHHHHhh--c
Q 033349 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYYE--E 91 (121)
Q Consensus 22 vvG~~~~GKTsl~~~~~~~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~~--~ 91 (121)
++|.+|+|||||++++.+ ..... ....|.......+.+++..+.+|||||+..+.. ....++. .
T Consensus 1 l~G~~~~GKssl~~~~~~------~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTG------ARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhc------CcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCC
Confidence 589999999999999987 22111 122345555566777788899999999865432 3455554 8
Q ss_pred cCEEEEEEeCCCcccHH
Q 033349 92 AHAVVFVIDAACPSRFE 108 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~ 108 (121)
+|++++|+|.+++++..
T Consensus 75 ~d~vi~v~d~~~~~~~~ 91 (158)
T cd01879 75 PDLIVNVVDATNLERNL 91 (158)
T ss_pred CcEEEEEeeCCcchhHH
Confidence 99999999998875543
No 164
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.52 E-value=1.3e-13 Score=93.37 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=58.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcchHH-----HHHHHhhcc
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRS-----IWEKYYEEA 92 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~-----~~~~~~~~~ 92 (121)
||+++|+++|||||+.+.+...+... ++ ....+|..++...+...+ ..+++||.||+..+.. .....++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~--dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPR--DT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GG--GG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCch--hc-cccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 79999999999999999987632221 11 144688888887776554 7999999999875433 356678999
Q ss_pred CEEEEEEeCCCcc
Q 033349 93 HAVVFVIDAACPS 105 (121)
Q Consensus 93 ~~ii~v~d~~~~~ 105 (121)
.++|+|+|+.+.+
T Consensus 78 ~~LIyV~D~qs~~ 90 (232)
T PF04670_consen 78 GVLIYVFDAQSDD 90 (232)
T ss_dssp SEEEEEEETT-ST
T ss_pred CEEEEEEEccccc
Confidence 9999999998443
No 165
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.51 E-value=4.7e-13 Score=92.68 Aligned_cols=87 Identities=22% Similarity=0.207 Sum_probs=56.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcch--------HHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL--------RSIWEKYYE 90 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~--------~~~~~~~~~ 90 (121)
+|+++|.+|+|||||++++++..-. ........|...........+.++.+|||||.... .......++
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~---~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS---ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe---ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 6899999999999999999872110 01111112222212223334577999999996432 112345678
Q ss_pred ccCEEEEEEeCCCcccHH
Q 033349 91 EAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~ 108 (121)
.+|++++|+|+++..+.+
T Consensus 79 ~aDvvl~VvD~~~~~~~~ 96 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG 96 (270)
T ss_pred hCCEEEEEEECCCCCchH
Confidence 999999999999877664
No 166
>PRK04213 GTP-binding protein; Provisional
Probab=99.51 E-value=4.1e-14 Score=93.70 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=55.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCC-----------CcchHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG-----------QPGLRSI 84 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g-----------~~~~~~~ 84 (121)
...+|+++|.+|+|||||++++.+ ..+.....++.......+.+. .+.+||||| ++.++..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~------~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTG------KKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDE 79 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC------CCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHH
Confidence 568999999999999999999987 333333334333333333333 689999999 4566666
Q ss_pred HHHHhh----ccCEEEEEEeCCC
Q 033349 85 WEKYYE----EAHAVVFVIDAAC 103 (121)
Q Consensus 85 ~~~~~~----~~~~ii~v~d~~~ 103 (121)
+..++. .++++++|+|.++
T Consensus 80 ~~~~~~~~~~~~~~vi~v~d~~~ 102 (201)
T PRK04213 80 IVRYIEDNADRILAAVLVVDGKS 102 (201)
T ss_pred HHHHHHhhhhhheEEEEEEeCcc
Confidence 666654 3567788888754
No 167
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.51 E-value=3.3e-13 Score=88.04 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=59.9
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCCCc----------c
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQP----------G 80 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~~----------~ 80 (121)
++....+|+++|++|+|||||++++.+ ..+...+.++.+... ..+..+ ..+.+||+||.. .
T Consensus 14 ~~~~~~~i~ivG~~~~GKStlin~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~ 86 (179)
T TIGR03598 14 PPDDGPEIAFAGRSNVGKSSLINALTN------RKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEK 86 (179)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhC------CCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHH
Confidence 446789999999999999999999987 322223334444321 223333 369999999942 2
Q ss_pred hHHHHHHHhh---ccCEEEEEEeCCCcccHHHH
Q 033349 81 LRSIWEKYYE---EAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 81 ~~~~~~~~~~---~~~~ii~v~d~~~~~s~~~~ 110 (121)
+......+++ .++++++|+|.+++-+..+.
T Consensus 87 ~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~ 119 (179)
T TIGR03598 87 WQKLIEEYLEKRENLKGVVLLMDIRHPLKELDL 119 (179)
T ss_pred HHHHHHHHHHhChhhcEEEEEecCCCCCCHHHH
Confidence 3333444554 36899999999876554443
No 168
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.51 E-value=3.2e-13 Score=87.24 Aligned_cols=98 Identities=21% Similarity=0.358 Sum_probs=77.7
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccC------CCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcchHHHHH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN------VEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWE 86 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~------~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~ 86 (121)
...+.||+|+|+.++||||++++++..... ...+...+...|+...+..+.+++ ..+.++++|||+++...|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 346789999999999999999999873210 011122233457777777888877 8899999999999999999
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHH
Q 033349 87 KYYEEAHAVVFVIDAACPSRFEDSKT 112 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~~~~~ 112 (121)
..++.+.++++++|.+.+..+ ++..
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a~~ 111 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HAEE 111 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HHHH
Confidence 999999999999999999888 4433
No 169
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.50 E-value=5.1e-13 Score=88.05 Aligned_cols=91 Identities=22% Similarity=0.236 Sum_probs=59.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccC--CCCCC-CCcccCCCceEEEEEEEC--------------CeEEEEEECCCCcc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSN--VEGLP-PDRIVPTVGLNIGRIEVS--------------NSKLVFWDLGGQPG 80 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~--~~~~~-~~~~~~t~~~~~~~~~~~--------------~~~~~i~d~~g~~~ 80 (121)
++|+++|++++|||||+++++..... ..... ..+...|.+.....+.+. +..+.+||+||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999862100 00000 001124455444444443 57899999999976
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHH
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
+..........+|++++|+|.++.....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~ 108 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQ 108 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHH
Confidence 5444444456789999999998754433
No 170
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=6.7e-13 Score=98.32 Aligned_cols=93 Identities=28% Similarity=0.275 Sum_probs=64.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC----------cchHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLRSIW 85 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~ 85 (121)
...+|+++|.+++|||||++++++..... .......|.......+.+++..+.+|||||. +.+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~---~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSV---VDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc---ccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHH
Confidence 35899999999999999999998721000 1111122333334556678888999999994 2232222
Q ss_pred -HHHhhccCEEEEEEeCCCcccHHHHH
Q 033349 86 -EKYYEEAHAVVFVIDAACPSRFEDSK 111 (121)
Q Consensus 86 -~~~~~~~~~ii~v~d~~~~~s~~~~~ 111 (121)
..+++.+|++++|+|++++.++++..
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~ 313 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR 313 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH
Confidence 23568999999999999998887763
No 171
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.49 E-value=8.9e-13 Score=89.82 Aligned_cols=88 Identities=23% Similarity=0.216 Sum_probs=65.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC--C------CCCC------cccCCCceEEEEEEECCeEEEEEECCCCcchHHH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVE--G------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~--~------~~~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 84 (121)
+|+++|..|+|||||+++++...+... + .+.+ +...|+......+.+++..+.+||+||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 479999999999999999987422211 0 1111 1112333445667778899999999999999888
Q ss_pred HHHHhhccCEEEEEEeCCCccc
Q 033349 85 WEKYYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s 106 (121)
....++.+|++++|+|.++...
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~ 102 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQ 102 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCC
Confidence 8889999999999999988644
No 172
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.49 E-value=9.1e-13 Score=86.67 Aligned_cols=88 Identities=25% Similarity=0.315 Sum_probs=59.6
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCCC----------cc
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQ----------PG 80 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~----------~~ 80 (121)
+.....+++++|++|+|||||++++++ ..+...+.++.+... .... .+.++.+||+||. +.
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~------~~~~~~~~~~~~~t~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~~~ 92 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTN------RKNLARTSKTPGRTQLINFFE-VNDKLRLVDLPGYGYAKVSKEEKEK 92 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhC------CCCcccccCCCCceeEEEEEe-cCCeEEEeCCCCCCCcCCCchHHHH
Confidence 344678999999999999999999997 443344455555332 1122 2467999999994 34
Q ss_pred hHHHHHHHhhcc---CEEEEEEeCCCcccH
Q 033349 81 LRSIWEKYYEEA---HAVVFVIDAACPSRF 107 (121)
Q Consensus 81 ~~~~~~~~~~~~---~~ii~v~d~~~~~s~ 107 (121)
+......+++.+ +++++|+|.+++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~ 122 (196)
T PRK00454 93 WQKLIEEYLRTRENLKGVVLLIDSRHPLKE 122 (196)
T ss_pred HHHHHHHHHHhCccceEEEEEEecCCCCCH
Confidence 444555555544 678888998776443
No 173
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=5.3e-13 Score=84.44 Aligned_cols=83 Identities=24% Similarity=0.244 Sum_probs=57.8
Q ss_pred EEEcCCCCCHHHHHHHHHhhccCCCCCCCCccc-CCCceEEEEEEECCeEEEEEECCCCcchHH--------HHHHHhhc
Q 033349 21 LILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-PTVGLNIGRIEVSNSKLVFWDLGGQPGLRS--------IWEKYYEE 91 (121)
Q Consensus 21 ~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~--------~~~~~~~~ 91 (121)
+++|.+|+|||||++++...... +..... .|...........+..+.+||+||...... .....++.
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 76 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDA----IVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEE 76 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEE----eecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHh
Confidence 47999999999999999872100 111122 233334456667778899999999876433 34456788
Q ss_pred cCEEEEEEeCCCcccH
Q 033349 92 AHAVVFVIDAACPSRF 107 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~ 107 (121)
+|++++|+|..++.+.
T Consensus 77 ~d~ii~v~d~~~~~~~ 92 (157)
T cd01894 77 ADVILFVVDGREGLTP 92 (157)
T ss_pred CCEEEEEEeccccCCc
Confidence 9999999999876443
No 174
>PTZ00099 rab6; Provisional
Probab=99.48 E-value=2.6e-13 Score=88.59 Aligned_cols=74 Identities=20% Similarity=0.370 Sum_probs=64.7
Q ss_pred CCCCCcccCCCceEEE--EEEECC--eEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhhcc
Q 033349 46 GLPPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKKGS 119 (121)
Q Consensus 46 ~~~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i~~ 119 (121)
+.|.+.+.||+|.... .+.+++ ..+.+|||+|++++...+..+++.+|++++|||++++++|+.+..|+..++.
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~ 80 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILN 80 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4677788999997763 355555 7799999999999999999999999999999999999999999999998764
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.48 E-value=1.7e-12 Score=83.08 Aligned_cols=91 Identities=23% Similarity=0.153 Sum_probs=60.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcch----------H-HHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------R-SIW 85 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----------~-~~~ 85 (121)
.++|+++|++|+|||||++++.+..... .......+.......+..++..+.+||+||.... . ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVI---VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccee---ccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHH
Confidence 5789999999999999999998721110 0111112222223455667778999999996432 1 111
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHH
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
...+..+|++++|+|..++.+....
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~ 103 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL 103 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH
Confidence 2345789999999999998775543
No 176
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.47 E-value=1.3e-12 Score=95.28 Aligned_cols=96 Identities=23% Similarity=0.309 Sum_probs=67.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC-CeEEEEEECCCCc----c---hHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQP----G---LRSIWEKYY 89 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~d~~g~~----~---~~~~~~~~~ 89 (121)
..|+++|.++||||||++++++....+ .+....|..++...+.+. +..+.+||+||.. . +...+...+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kI----a~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi 234 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKI----ANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI 234 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCcc----ccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH
Confidence 479999999999999999999733222 122334666666666666 6889999999952 1 223334445
Q ss_pred hccCEEEEEEeCCCc---ccHHHHHHHHHhh
Q 033349 90 EEAHAVVFVIDAACP---SRFEDSKTALGKK 117 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~---~s~~~~~~~l~~i 117 (121)
+.++++++|+|+++. +.+++...|..++
T Consensus 235 er~~llI~VID~s~~~~~dp~e~~~~i~~EL 265 (424)
T PRK12297 235 ERTRVIVHVIDMSGSEGRDPIEDYEKINKEL 265 (424)
T ss_pred hhCCEEEEEEeCCccccCChHHHHHHHHHHH
Confidence 679999999999864 5666666665554
No 177
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.47 E-value=1.4e-12 Score=82.32 Aligned_cols=97 Identities=26% Similarity=0.443 Sum_probs=73.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEEC-C--eEEEEEECCCCcch-HHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVS-N--SKLVFWDLGGQPGL-RSIWEKYYE 90 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~--~~~~i~d~~g~~~~-~~~~~~~~~ 90 (121)
+..|+++.|..++|||++++++.. .+ .....++.||++-.+ ..++-+ + ..+.+|||.|-+.. ..+-+.+++
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~y--g~--~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q 83 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLY--GN--HVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ 83 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHh--cc--CCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc
Confidence 568999999999999999999987 22 122346678887544 233222 2 57999999997766 456677888
Q ss_pred ccCEEEEEEeCCCcccHHHHH---HHHHh
Q 033349 91 EAHAVVFVIDAACPSRFEDSK---TALGK 116 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~---~~l~~ 116 (121)
-+|++++||+..|++||+.+. +|+++
T Consensus 84 ~aDafVLVYs~~d~eSf~rv~llKk~Idk 112 (198)
T KOG3883|consen 84 FADAFVLVYSPMDPESFQRVELLKKEIDK 112 (198)
T ss_pred cCceEEEEecCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999998774 55554
No 178
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.46 E-value=1.7e-12 Score=94.94 Aligned_cols=95 Identities=27% Similarity=0.312 Sum_probs=65.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC--------cchHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--------PGLRSIWEKYYE 90 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~--------~~~~~~~~~~~~ 90 (121)
+|+++|.+|+|||||++++++.... ...+....|.......+.+++..+.+|||||. +.+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~---~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDA---IVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcc---eecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 5899999999999999999872110 01111222334445667778889999999995 334455666778
Q ss_pred ccCEEEEEEeCCCcccHH--HHHHHHHh
Q 033349 91 EAHAVVFVIDAACPSRFE--DSKTALGK 116 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~--~~~~~l~~ 116 (121)
.+|++++|+|..+..+.. .+..|+.+
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~~i~~~l~~ 105 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDEEIAKWLRK 105 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 999999999998754433 34455543
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.46 E-value=1.4e-12 Score=82.76 Aligned_cols=86 Identities=23% Similarity=0.283 Sum_probs=55.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchH--------HHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR--------SIWEK 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~--------~~~~~ 87 (121)
...+|+++|++|+|||||++++.+. ... ........+...........+..+.+||+||..... .....
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~ 78 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQ--KIS-IVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWS 78 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC--ceE-eccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHH
Confidence 3678999999999999999999872 110 000011111111122333345789999999964322 23345
Q ss_pred HhhccCEEEEEEeCCCc
Q 033349 88 YYEEAHAVVFVIDAACP 104 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~ 104 (121)
.+..+|++++|+|.+++
T Consensus 79 ~~~~~d~i~~v~d~~~~ 95 (168)
T cd04163 79 ALKDVDLVLFVVDASEP 95 (168)
T ss_pred HHHhCCEEEEEEECCCc
Confidence 57889999999999987
No 180
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.46 E-value=3.1e-12 Score=88.55 Aligned_cols=88 Identities=25% Similarity=0.221 Sum_probs=63.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCC--CCC----------CC------cccCCCceEEEEEEECCeEEEEEECCCCc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVE--GLP----------PD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~----------~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~ 79 (121)
-.|+++|.+++|||||+++++.....+. +.. .+ +...++......+.+.+..+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 3699999999999999999976322111 000 00 11123333445777788999999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcc
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~ 105 (121)
++.......++.+|++++|+|.++..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~ 108 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGV 108 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCc
Confidence 88876777789999999999998753
No 181
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.45 E-value=2e-12 Score=95.80 Aligned_cols=84 Identities=23% Similarity=0.339 Sum_probs=62.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc----c---hHHHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----G---LRSIWEKY 88 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~----~---~~~~~~~~ 88 (121)
....|+++|.+++|||||+++++.....+ .+....|..++...+.+.+..+.+||+||.. . +...+..+
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkI----adypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrh 233 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKI----ADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRH 233 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccc----cccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHH
Confidence 35789999999999999999998732221 2233467777777788888899999999942 1 22233445
Q ss_pred hhccCEEEEEEeCCC
Q 033349 89 YEEAHAVVFVIDAAC 103 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~ 103 (121)
++.||++++|+|+++
T Consensus 234 ieradvLv~VVD~s~ 248 (500)
T PRK12296 234 IERCAVLVHVVDCAT 248 (500)
T ss_pred HHhcCEEEEEECCcc
Confidence 678999999999975
No 182
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.45 E-value=2.8e-12 Score=97.23 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CCCCcccC------CCceEE----EEEEE---CC--eEEEEEECCCCcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LPPDRIVP------TVGLNI----GRIEV---SN--SKLVFWDLGGQPG 80 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~-~~~~~~~~------t~~~~~----~~~~~---~~--~~~~i~d~~g~~~ 80 (121)
.-+|+++|+.++|||||+.+++........ .+...+.. +.|..+ ..+.+ ++ ..+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 347999999999999999999874221110 11122211 223322 22333 22 6799999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
+...+..+++.+|++++|+|+++..+.+....|.
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~ 116 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVY 116 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHH
Confidence 9988899999999999999999977666665554
No 183
>PRK11058 GTPase HflX; Provisional
Probab=99.45 E-value=2.2e-12 Score=94.35 Aligned_cols=96 Identities=25% Similarity=0.317 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCe-EEEEEECCCCcc--hHHHH------HHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-KLVFWDLGGQPG--LRSIW------EKY 88 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~i~d~~g~~~--~~~~~------~~~ 88 (121)
.+++++|.+|+|||||++++++. +. ...+....|.......+.+.+. .+.+|||+|..+ ....+ ...
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~--~~--~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~ 273 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEA--RV--YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE 273 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC--ce--eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHH
Confidence 58999999999999999999871 10 0112334566655566777664 789999999632 11122 223
Q ss_pred hhccCEEEEEEeCCCcccHHHHH---HHHHhh
Q 033349 89 YEEAHAVVFVIDAACPSRFEDSK---TALGKK 117 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~~---~~l~~i 117 (121)
++.+|++++|+|++++.+++.+. .|+.++
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el 305 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEI 305 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh
Confidence 57899999999999998777763 455544
No 184
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.45 E-value=2.8e-12 Score=88.71 Aligned_cols=90 Identities=19% Similarity=0.230 Sum_probs=66.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCC--CCCC------------cccCCCceEEEEEEECCeEEEEEECCCCcchHHH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~--~~~~------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 84 (121)
+|+++|.+|+|||||+++++........ .... ....++......+.+++..+.+||+||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 4799999999999999999763222100 0000 1123444445667778889999999999888777
Q ss_pred HHHHhhccCEEEEEEeCCCcccHH
Q 033349 85 WEKYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
....++.+|++++|+|.++.....
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~ 104 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVG 104 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHH
Confidence 888899999999999998865544
No 185
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.45 E-value=1.3e-12 Score=83.52 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=58.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC------cchHHHHHHHh--
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGLRSIWEKYY-- 89 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~------~~~~~~~~~~~-- 89 (121)
++|+++|.|++|||||++++++..... .+....|+......+.+.+..+.++|+||- ..-..+...++
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v----~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~ 76 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKV----GNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLS 76 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEE----EESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcee----cCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhh
Confidence 589999999999999999999833221 122335666666778888999999999992 11234445554
Q ss_pred hccCEEEEEEeCCCcc
Q 033349 90 EEAHAVVFVIDAACPS 105 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~ 105 (121)
...|+++.|+|.++.+
T Consensus 77 ~~~D~ii~VvDa~~l~ 92 (156)
T PF02421_consen 77 EKPDLIIVVVDATNLE 92 (156)
T ss_dssp TSSSEEEEEEEGGGHH
T ss_pred cCCCEEEEECCCCCHH
Confidence 5899999999998743
No 186
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.44 E-value=1.7e-12 Score=86.70 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCC------------CC---------------CCcccCCCceEEEEEEECCeEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG------------LP---------------PDRIVPTVGLNIGRIEVSNSKLV 71 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~------------~~---------------~~~~~~t~~~~~~~~~~~~~~~~ 71 (121)
+|+++|.+++|||||+++++...+.+.. .. ..+...|.......+..++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 5899999999999999999763222110 00 00112233333445666778899
Q ss_pred EEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 72 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+|||||++++.......++.+|++++|+|++++
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 999999988766666677899999999999875
No 187
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.43 E-value=4.2e-12 Score=85.06 Aligned_cols=90 Identities=19% Similarity=0.122 Sum_probs=61.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCC----C-----CCCc--ccCCCceE----EEEEEEC-----CeEEEEEECCCC
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG----L-----PPDR--IVPTVGLN----IGRIEVS-----NSKLVFWDLGGQ 78 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~----~-----~~~~--~~~t~~~~----~~~~~~~-----~~~~~i~d~~g~ 78 (121)
+|+++|+.++|||||+.+++........ . ..+. .+...|.. ...+.+. ...+.+||+||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 5899999999999999999874322110 0 0000 01111111 1222222 267999999999
Q ss_pred cchHHHHHHHhhccCEEEEEEeCCCcccHH
Q 033349 79 PGLRSIWEKYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 79 ~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
.++.......+..+|++++|+|.++..++.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~ 111 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSN 111 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHH
Confidence 999888888889999999999998876654
No 188
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=4.9e-12 Score=91.65 Aligned_cols=97 Identities=24% Similarity=0.341 Sum_probs=68.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcc-------hHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPG-------LRSIWEKYY 89 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~-------~~~~~~~~~ 89 (121)
..|+++|.+++|||||+++++...... ......|..+....+.+.+ ..+.++|+||..+ +...+...+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~v----s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i 235 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKV----ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHL 235 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccc----cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHH
Confidence 479999999999999999998733211 2233355566666666665 5699999999532 223334567
Q ss_pred hccCEEEEEEeCC---CcccHHHHHHHHHhhc
Q 033349 90 EEAHAVVFVIDAA---CPSRFEDSKTALGKKG 118 (121)
Q Consensus 90 ~~~~~ii~v~d~~---~~~s~~~~~~~l~~i~ 118 (121)
+.++++++|+|++ +.+.+++...|+.++.
T Consensus 236 ~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~ 267 (390)
T PRK12298 236 ERCRVLLHLIDIAPIDGSDPVENARIIINELE 267 (390)
T ss_pred HhCCEEEEEeccCcccccChHHHHHHHHHHHH
Confidence 8999999999988 4566777777766654
No 189
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.41 E-value=4.1e-12 Score=92.93 Aligned_cols=91 Identities=23% Similarity=0.157 Sum_probs=62.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHH-----------HH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-----------IW 85 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-----------~~ 85 (121)
.++++++|.+++|||||++++++..... .......|.......+..++..+.+|||||..+... ..
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~---~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVI---VSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeee---cCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4899999999999999999998721000 111112222333345566778899999999643221 11
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHH
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
...++.+|++++|+|++++.+.++.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~ 273 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL 273 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH
Confidence 3457899999999999998776665
No 190
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.40 E-value=3.8e-12 Score=84.78 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCCcccCCCceEEEEEEEC---------------------------C--
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRIVPTVGLNIGRIEVS---------------------------N-- 67 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~---------------------------~-- 67 (121)
+.|+++|+.++|||||+..+.....+. .... +...|+......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~--~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEEL--ERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGE 78 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeE--EcCCceeecccccccccccCcCCCCccccccccccccccccccCCc
Confidence 468999999999999999997631111 0111 1111111111111111 2
Q ss_pred ----eEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 68 ----SKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 68 ----~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
..+.+||+||++.+.......+..+|++++|+|++++
T Consensus 79 ~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~ 119 (203)
T cd01888 79 TKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEP 119 (203)
T ss_pred cccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCC
Confidence 5789999999998887777777899999999999863
No 191
>PRK13351 elongation factor G; Reviewed
Probab=99.40 E-value=6.3e-12 Score=96.82 Aligned_cols=99 Identities=19% Similarity=0.136 Sum_probs=75.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCC-------CCCC-------CcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-------GLPP-------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~-------~~~~-------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
....+|+++|..++|||||+++++...+... +.+. .++..|+......+.+.+..+.+|||||+.+
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d 85 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID 85 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence 4567899999999999999999986322110 0011 1244566666667778889999999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHH
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTA 113 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~ 113 (121)
+.......++.+|++++|+|.++..+.+....|
T Consensus 86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~ 118 (687)
T PRK13351 86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW 118 (687)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH
Confidence 888888999999999999999987666554433
No 192
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.40 E-value=2.6e-12 Score=94.07 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=65.9
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCC-------------CCcccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP-------------PDRIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--------------~~~-------------~~~~~~t~~~~~~~~~~~ 66 (121)
.++.++++++|..++|||||+.+++.....+. +.. ..+...|+......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 46789999999999999999999985322211 100 002233555555667777
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
+..+.+||+||++++.......+..+|++++|+|+++
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEccc
Confidence 8899999999998876544455689999999999987
No 193
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.40 E-value=5.9e-12 Score=95.24 Aligned_cols=82 Identities=22% Similarity=0.257 Sum_probs=62.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEECCe-EEEEEECCCCcchHHHHHHHhhcc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNS-KLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~-~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
+..+++++|+.++|||||++++.+ ..+.....+ |.......+.+++. .+.+|||||++++...+...+..+
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~------~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~a 159 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRK------TKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVT 159 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh------CCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccC
Confidence 557899999999999999999987 333222222 22222234555444 899999999999998888888999
Q ss_pred CEEEEEEeCCC
Q 033349 93 HAVVFVIDAAC 103 (121)
Q Consensus 93 ~~ii~v~d~~~ 103 (121)
|++++|+|+++
T Consensus 160 DiaILVVda~d 170 (587)
T TIGR00487 160 DIVVLVVAADD 170 (587)
T ss_pred CEEEEEEECCC
Confidence 99999999876
No 194
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=6.9e-13 Score=86.13 Aligned_cols=97 Identities=16% Similarity=0.335 Sum_probs=84.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC---C-eEEEEEECCCCcchHHHHHHHhhc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---N-SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~-~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
..++++++|+.|.|||+++.+.+. ++|...+.+|+|......... + +.+..||+.|++.+......++-.
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~lt------geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~ 82 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLT------GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQ 82 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhc------ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEe
Confidence 479999999999999999999998 999999999999987655443 3 789999999999998887777778
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
..+++++||++.+-++.+...|-..+.
T Consensus 83 ~qcAiimFdVtsr~t~~n~~rwhrd~~ 109 (216)
T KOG0096|consen 83 GQCAIIMFDVTSRFTYKNVPRWHRDLV 109 (216)
T ss_pred cceeEEEeeeeehhhhhcchHHHHHHH
Confidence 899999999999989999888876643
No 195
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.39 E-value=8.4e-12 Score=96.12 Aligned_cols=90 Identities=26% Similarity=0.308 Sum_probs=65.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCccc----CCCceEEEEEEE--CCeEEEEEECCCCcchHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV----PTVGLNIGRIEV--SNSKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~----~t~~~~~~~~~~--~~~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
+...|+++|..++|||||+.++.. ..+..... ..++.....+.. .+..+.+|||||++.+...+...+
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~------~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~ 316 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRK------TQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGA 316 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh------ccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHH
Confidence 557899999999999999999987 22222111 122322223333 247899999999999999998899
Q ss_pred hccCEEEEEEeCCCc---ccHHHHH
Q 033349 90 EEAHAVVFVIDAACP---SRFEDSK 111 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~---~s~~~~~ 111 (121)
..+|++++|+|+.+. ++++.+.
T Consensus 317 ~~aDiaILVVDA~dGv~~QT~E~I~ 341 (742)
T CHL00189 317 NVTDIAILIIAADDGVKPQTIEAIN 341 (742)
T ss_pred HHCCEEEEEEECcCCCChhhHHHHH
Confidence 999999999998873 4454443
No 196
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.39 E-value=8.3e-12 Score=82.62 Aligned_cols=99 Identities=13% Similarity=0.003 Sum_probs=62.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc-------hHHHHH----
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG-------LRSIWE---- 86 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~-------~~~~~~---- 86 (121)
++|+++|.+|+|||||++.+++...- .........|.........+.+..+.++||||-.. ......
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~--~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVF--ESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCcc--ccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999872111 11111223455555666677888999999999332 111111
Q ss_pred HHhhccCEEEEEEeCCCc-ccHHHHHHHHHhhc
Q 033349 87 KYYEEAHAVVFVIDAACP-SRFEDSKTALGKKG 118 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~-~s~~~~~~~l~~i~ 118 (121)
......|++++|.++.+. +....+.+++.+++
T Consensus 79 ~~~~g~~~illVi~~~~~t~~d~~~l~~l~~~f 111 (196)
T cd01852 79 LSAPGPHAFLLVVPLGRFTEEEEQAVETLQELF 111 (196)
T ss_pred hcCCCCEEEEEEEECCCcCHHHHHHHHHHHHHh
Confidence 122468999999998762 22344445555543
No 197
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.39 E-value=5.1e-12 Score=95.53 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=62.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE----------------CCeEEEEEECCCCcchH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV----------------SNSKLVFWDLGGQPGLR 82 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~----------------~~~~~~i~d~~g~~~~~ 82 (121)
-|+++|.+++|||||++++.+. ............++|........ +...+.+|||||++.+.
T Consensus 6 iV~IiG~~d~GKTSLln~l~~~--~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 6 IVSVLGHVDHGKTTLLDKIRGS--AVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred EEEEECCCCCCHHHHHHHHhcc--ccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 4899999999999999999872 11111111122334433211110 01238899999999999
Q ss_pred HHHHHHhhccCEEEEEEeCCC---cccHHHHH
Q 033349 83 SIWEKYYEEAHAVVFVIDAAC---PSRFEDSK 111 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~ 111 (121)
..+...++.+|++++|+|+++ +++++.+.
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~ 115 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEALN 115 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH
Confidence 988888999999999999987 55665554
No 198
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=1.4e-12 Score=86.19 Aligned_cols=96 Identities=27% Similarity=0.388 Sum_probs=76.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhh---ccC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYE---EAH 93 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~---~~~ 93 (121)
.-.++++|+++||||+|..++.. +.++.. .+++.++...+.+.+...+++|.|||.+.+.-+..++. .+-
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~------gs~~~T-vtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLIT------GSHRGT-VTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhc------CCccCe-eeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccce
Confidence 35699999999999999999988 655433 35555666667777777999999999999987777776 799
Q ss_pred EEEEEEeCC-CcccHHHHHHHHHhhcc
Q 033349 94 AVVFVIDAA-CPSRFEDSKTALGKKGS 119 (121)
Q Consensus 94 ~ii~v~d~~-~~~s~~~~~~~l~~i~~ 119 (121)
+++||+|.. .+....++.+.+..|+.
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~ 137 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILL 137 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHH
Confidence 999999974 56678888888888764
No 199
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.38 E-value=8.2e-12 Score=96.82 Aligned_cols=83 Identities=22% Similarity=0.265 Sum_probs=63.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhcc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
.+.-.|+++|..++|||||+++|.. ..+...... |.......+.+++..+.||||||++.+...+...++.+
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~------~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~a 361 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRK------TNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVT 361 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh------CCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhC
Confidence 3567899999999999999999976 222211111 22222234566678899999999999998888888999
Q ss_pred CEEEEEEeCCC
Q 033349 93 HAVVFVIDAAC 103 (121)
Q Consensus 93 ~~ii~v~d~~~ 103 (121)
|++++|+|+++
T Consensus 362 DiaILVVdAdd 372 (787)
T PRK05306 362 DIVVLVVAADD 372 (787)
T ss_pred CEEEEEEECCC
Confidence 99999999987
No 200
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.38 E-value=1.1e-11 Score=81.54 Aligned_cols=91 Identities=24% Similarity=0.255 Sum_probs=67.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC------------CC--CcccCCCceEEEEEE--ECCeEEEEEECCCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------PP--DRIVPTVGLNIGRIE--VSNSKLVFWDLGGQ 78 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~------------~~--~~~~~t~~~~~~~~~--~~~~~~~i~d~~g~ 78 (121)
++..+|+++|+.++|||||+.+++...+..... .. .+..-|+......+. ..+..+.++|+||+
T Consensus 1 k~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 1 KNIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGH 80 (188)
T ss_dssp STEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSS
T ss_pred CCEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccc
Confidence 356889999999999999999998643221100 00 112335555555666 66789999999999
Q ss_pred cchHHHHHHHhhccCEEEEEEeCCCcc
Q 033349 79 PGLRSIWEKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 79 ~~~~~~~~~~~~~~~~ii~v~d~~~~~ 105 (121)
..+.......++.+|++++|+|+.+.-
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~ 107 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGI 107 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBS
T ss_pred cceeecccceecccccceeeeeccccc
Confidence 998888888889999999999998753
No 201
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.37 E-value=2e-11 Score=84.61 Aligned_cols=86 Identities=19% Similarity=0.116 Sum_probs=64.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC--CCCC------------CcccCCCceEEEEEEECCeEEEEEECCCCcchHHH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVE--GLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~~------------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 84 (121)
+|+++|.+++|||||+++++...+... +... .+...|+......+.+++.++.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 479999999999999999975332210 0000 11122334445677788899999999999988888
Q ss_pred HHHHhhccCEEEEEEeCCCc
Q 033349 85 WEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~ 104 (121)
+...++.+|++++|+|..+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g 100 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAG 100 (270)
T ss_pred HHHHHHHcCEEEEEEECCCC
Confidence 88899999999999998774
No 202
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.37 E-value=2.3e-11 Score=82.13 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=63.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCC----CCC--------CcccCCCceEEEEEEEC----------CeEEEEEECC
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEG----LPP--------DRIVPTVGLNIGRIEVS----------NSKLVFWDLG 76 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~----~~~--------~~~~~t~~~~~~~~~~~----------~~~~~i~d~~ 76 (121)
.|+++|..++|||||+.+++...+.... ... .+...|+......+.+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 5899999999999999999763321110 000 01112222222223333 5779999999
Q ss_pred CCcchHHHHHHHhhccCEEEEEEeCCCcccHHH
Q 033349 77 GQPGLRSIWEKYYEEAHAVVFVIDAACPSRFED 109 (121)
Q Consensus 77 g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~ 109 (121)
|++++.......++.+|++++|+|+.+....+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t 114 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT 114 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH
Confidence 999999988999999999999999988655543
No 203
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.36 E-value=1.4e-11 Score=95.16 Aligned_cols=91 Identities=22% Similarity=0.245 Sum_probs=63.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcc-cCCCceEEEEEEECCeEEEEEECCCCc----------chHHH-
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRI-VPTVGLNIGRIEVSNSKLVFWDLGGQP----------GLRSI- 84 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~- 84 (121)
..+|+++|.+++|||||++++++... .....+ ..|.......+.+++..+.+|||||.. .+...
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~----~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEER----AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc----cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHH
Confidence 48999999999999999999987210 011122 223333345567788889999999953 12211
Q ss_pred HHHHhhccCEEEEEEeCCCcccHHHHH
Q 033349 85 WEKYYEEAHAVVFVIDAACPSRFEDSK 111 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~~s~~~~~ 111 (121)
....++.+|++++|+|+++..+.++..
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~ 552 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK 552 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH
Confidence 133468899999999999988877664
No 204
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.36 E-value=5.4e-12 Score=81.02 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=49.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc----chHHHHHHHhhccCE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP----GLRSIWEKYYEEAHA 94 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~----~~~~~~~~~~~~~~~ 94 (121)
+|+++|.+++|||||++++.+ . +. ...+|.+. .+... .+||+||.. +........++.+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~------~-~~-~~~~~~~v-----~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQG------N-YT-LARKTQAV-----EFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcC------C-Cc-cCccceEE-----EECCC--CcccCCccccCCHHHHHHHHHHHhcCCE
Confidence 799999999999999999875 1 11 11222222 22222 379999972 222222334689999
Q ss_pred EEEEEeCCCcccH
Q 033349 95 VVFVIDAACPSRF 107 (121)
Q Consensus 95 ii~v~d~~~~~s~ 107 (121)
+++|+|.++.+++
T Consensus 68 il~v~d~~~~~s~ 80 (158)
T PRK15467 68 LIYVHGANDPESR 80 (158)
T ss_pred EEEEEeCCCcccc
Confidence 9999999988765
No 205
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.36 E-value=1.6e-11 Score=87.65 Aligned_cols=70 Identities=23% Similarity=0.406 Sum_probs=60.3
Q ss_pred ccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc----------ccHHHHHHHHHhhccCC
Q 033349 52 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALGKKGSSE 121 (121)
Q Consensus 52 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~l~~i~~~~ 121 (121)
..||.|++...+.+++..+.+||++|+...+..|..++.++++++||+|+++- ..++++...+..+++++
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 34677888888888899999999999999999999999999999999999973 46888888888887753
No 206
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.35 E-value=2e-11 Score=92.67 Aligned_cols=98 Identities=15% Similarity=0.121 Sum_probs=67.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCC-----CCCCC------cccCCCceEEEEEEEC-----CeEEEEEECCCCcc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVE-----GLPPD------RIVPTVGLNIGRIEVS-----NSKLVFWDLGGQPG 80 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~-----~~~~~------~~~~t~~~~~~~~~~~-----~~~~~i~d~~g~~~ 80 (121)
.-+++++|+.++|||||+.+++...+... ..+.+ +...|+......+.+. +..+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 44799999999999999999987332211 11111 1112222222233332 37799999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
+...+..+++.+|++++|+|+++....+....|.
T Consensus 87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~ 120 (600)
T PRK05433 87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVY 120 (600)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH
Confidence 9988899999999999999999876555554443
No 207
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.35 E-value=5.9e-12 Score=92.25 Aligned_cols=93 Identities=17% Similarity=0.155 Sum_probs=66.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC--C---------CC--cccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL--P---------PD--RIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--------------~~--~---------~~--~~~~t~~~~~~~~~~~ 66 (121)
.+..++++++|..++|||||+.+++...+... +. + .. +...|+......+..+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 46789999999999999999999975322110 00 0 00 1122333444556666
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCccc
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~s 106 (121)
+..+.+||+||++++.......+..+|++++|+|+++.++
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~ 123 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEF 123 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCc
Confidence 7899999999998876655556789999999999988743
No 208
>PRK00089 era GTPase Era; Reviewed
Probab=99.35 E-value=1.8e-11 Score=85.53 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=54.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEE-EEECCeEEEEEECCCCcch--------HHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-IEVSNSKLVFWDLGGQPGL--------RSIWE 86 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~d~~g~~~~--------~~~~~ 86 (121)
+.-.|+++|++|+|||||++++++..-.. ......|....... ...++.++.+|||||.... .....
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~----vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~ 79 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISI----VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW 79 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceee----cCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence 34569999999999999999998721110 01111222222222 2234578999999996432 22334
Q ss_pred HHhhccCEEEEEEeCCC
Q 033349 87 KYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~ 103 (121)
..+..+|++++|+|+++
T Consensus 80 ~~~~~~D~il~vvd~~~ 96 (292)
T PRK00089 80 SSLKDVDLVLFVVDADE 96 (292)
T ss_pred HHHhcCCEEEEEEeCCC
Confidence 45678999999999988
No 209
>PRK10218 GTP-binding protein; Provisional
Probab=99.35 E-value=2.3e-11 Score=92.32 Aligned_cols=89 Identities=19% Similarity=0.236 Sum_probs=65.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC--------CCcccCCCceE----EEEEEECCeEEEEEECCCCcchHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP--------PDRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGLRS 83 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~--------~~~~~~t~~~~----~~~~~~~~~~~~i~d~~g~~~~~~ 83 (121)
...+|+++|+.++|||||+.+++...+...... ....+.+.|.. ...+.+++..+.+||+||+..+..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 356799999999999999999986322111000 00112334443 335566778999999999999999
Q ss_pred HHHHHhhccCEEEEEEeCCCc
Q 033349 84 IWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.+..+++.+|++++|+|+.+.
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G 104 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDG 104 (607)
T ss_pred HHHHHHHhCCEEEEEEecccC
Confidence 999999999999999999874
No 210
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.35 E-value=9e-12 Score=94.30 Aligned_cols=90 Identities=23% Similarity=0.223 Sum_probs=66.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
+.|+++|..++|||||++++++.. . ..+..++.. |+......+..++..+.+||+||++++.......+..+|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~--~-d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIA--A-DRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc--C-cCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 358999999999999999998511 1 122223333 33334455677778899999999998887777778899999
Q ss_pred EEEEeCCC---cccHHHH
Q 033349 96 VFVIDAAC---PSRFEDS 110 (121)
Q Consensus 96 i~v~d~~~---~~s~~~~ 110 (121)
++|+|+++ +++++.+
T Consensus 78 ILVVDa~~G~~~qT~ehl 95 (581)
T TIGR00475 78 LLVVDADEGVMTQTGEHL 95 (581)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 99999987 4555554
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.35 E-value=2.1e-11 Score=92.41 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCC--CC----------CcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGL--PP----------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWE 86 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~--~~----------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~ 86 (121)
+|+++|+.++|||||+.+++...+..... .. .+...|+......+.+++..+.+|||||+..+.....
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 68999999999999999998632221100 00 0112344444456778889999999999999998888
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
..++.+|++++|+|+.+. .......|+..+
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a 112 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKA 112 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHH
Confidence 999999999999999763 233344444443
No 212
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.34 E-value=3e-11 Score=81.01 Aligned_cols=100 Identities=17% Similarity=0.098 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc-------chHHHHHH---
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP-------GLRSIWEK--- 87 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~-------~~~~~~~~--- 87 (121)
++|+++|.+|+||||+++.+++ .............|.........+.+..+.++||||-. .....+..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg--~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILG--KEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT--SS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc--ccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 5899999999999999999987 22111111123346666666778899999999999921 11122222
Q ss_pred -HhhccCEEEEEEeCCCcc-cHHHHHHHHHhhcc
Q 033349 88 -YYEEAHAVVFVIDAACPS-RFEDSKTALGKKGS 119 (121)
Q Consensus 88 -~~~~~~~ii~v~d~~~~~-s~~~~~~~l~~i~~ 119 (121)
.....|++++|++...-. .-..+-+++.+++.
T Consensus 79 ~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG 112 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFG 112 (212)
T ss_dssp HTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHC
T ss_pred hccCCCeEEEEEEecCcchHHHHHHHHHHHHHcc
Confidence 224689999999987321 12333345555543
No 213
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.34 E-value=2.2e-11 Score=86.19 Aligned_cols=68 Identities=26% Similarity=0.481 Sum_probs=59.1
Q ss_pred cCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc----------ccHHHHHHHHHhhccC
Q 033349 53 VPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALGKKGSS 120 (121)
Q Consensus 53 ~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~l~~i~~~ 120 (121)
.||.|+....+.+++..+.+||++|+...+..|..++.++++++||+|+++- ..++++...+..++++
T Consensus 146 ~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~ 223 (317)
T cd00066 146 VKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNS 223 (317)
T ss_pred cccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 4677777778888889999999999999999999999999999999999874 5688888888887765
No 214
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.34 E-value=9e-12 Score=92.34 Aligned_cols=99 Identities=15% Similarity=0.129 Sum_probs=77.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCCCcchHHHHHHHhhcc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEA 92 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~ 92 (121)
...+||+++|+.|+|||||+-.+.. .++.+..++...... ..++-..++..++|++....-+..+...++.+
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~------eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA 80 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLE------EEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA 80 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHh------hhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence 4689999999999999999999998 666655554443221 22333346799999987776677777888999
Q ss_pred CEEEEEEeCCCcccHHHHH-HHHHhhcc
Q 033349 93 HAVVFVIDAACPSRFEDSK-TALGKKGS 119 (121)
Q Consensus 93 ~~ii~v~d~~~~~s~~~~~-~~l~~i~~ 119 (121)
|++++||+++++++++.+. +||..+..
T Consensus 81 ~vi~lvyavd~~~T~D~ist~WLPlir~ 108 (625)
T KOG1707|consen 81 DVICLVYAVDDESTVDRISTKWLPLIRQ 108 (625)
T ss_pred CEEEEEEecCChHHhhhhhhhhhhhhhc
Confidence 9999999999999999996 79988754
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.31 E-value=2e-11 Score=92.45 Aligned_cols=94 Identities=26% Similarity=0.353 Sum_probs=63.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE---------C-------CeEEEEEECCCCc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---------S-------NSKLVFWDLGGQP 79 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---------~-------~~~~~i~d~~g~~ 79 (121)
+.-.|+++|..++|||||++++.+. ............++|........ . -..+.+|||||++
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~--~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGT--AVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc--ccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3456999999999999999999762 11111111122234432211110 0 0126899999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCC---cccHHHHH
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSK 111 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~ 111 (121)
.+...+...+..+|++++|+|+++ +++++.+.
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~ 117 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN 117 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH
Confidence 999888888889999999999987 66666654
No 216
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.31 E-value=5.4e-11 Score=92.01 Aligned_cols=82 Identities=26% Similarity=0.266 Sum_probs=58.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE----EEEEEECCeEEEEEECCCCcc--------hHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN----IGRIEVSNSKLVFWDLGGQPG--------LRS 83 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~i~d~~g~~~--------~~~ 83 (121)
...+|+++|.+++|||||++++++ ... ..+.++.|.. .....+.+..+.+|||||.+. +..
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~------~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~ 346 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILG------RRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIAS 346 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhC------CCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHH
Confidence 347899999999999999999987 211 1122233322 234556678899999999652 334
Q ss_pred HHHHHhhccCEEEEEEeCCCc
Q 033349 84 IWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~~~ 104 (121)
....+++.+|++++|+|.++.
T Consensus 347 ~~~~~~~~aD~iL~VvDa~~~ 367 (712)
T PRK09518 347 QAQIAVSLADAVVFVVDGQVG 367 (712)
T ss_pred HHHHHHHhCCEEEEEEECCCC
Confidence 445667899999999999864
No 217
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.31 E-value=6.1e-11 Score=83.92 Aligned_cols=84 Identities=21% Similarity=0.332 Sum_probs=54.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEE-----------------EEEC---CeEEEEEECCCC-
Q 033349 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGR-----------------IEVS---NSKLVFWDLGGQ- 78 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-----------------~~~~---~~~~~i~d~~g~- 78 (121)
|+++|.+++|||||++++++..............|++|..... ...+ ..++++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 5799999999999999999832221111112334555533211 0112 267999999996
Q ss_pred ---cchHHH---HHHHhhccCEEEEEEeCCC
Q 033349 79 ---PGLRSI---WEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 79 ---~~~~~~---~~~~~~~~~~ii~v~d~~~ 103 (121)
++...+ +...+++||++++|+|+++
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 333333 3345899999999999974
No 218
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.31 E-value=5e-11 Score=87.45 Aligned_cols=91 Identities=23% Similarity=0.180 Sum_probs=61.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCccc-CCCceEEEEEEECCeEEEEEECCCCcch----------HH-
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-PTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RS- 83 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~- 83 (121)
..++|+++|.+++|||||++++++.-. ....... .|.......+..++..+.+|||||..+. ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~----~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEER----VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCc----eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 469999999999999999999986210 0111111 1222223445567788999999995321 11
Q ss_pred HHHHHhhccCEEEEEEeCCCcccHHHH
Q 033349 84 IWEKYYEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
.....++.+|++++|+|++++.+.++.
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~ 274 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDL 274 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHH
Confidence 112356899999999999998776654
No 219
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.31 E-value=5.2e-11 Score=78.98 Aligned_cols=88 Identities=19% Similarity=0.156 Sum_probs=62.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCC----C------C--CcccCCCceEEEEEEECCeEEEEEECCCCcchHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----P------P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSI 84 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~----~------~--~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~ 84 (121)
.++|+++|..++|||||+.+++......... . . .+...|+......++.++.++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 5789999999999999999998632111000 0 0 01122333333445556688999999999888776
Q ss_pred HHHHhhccCEEEEEEeCCCc
Q 033349 85 WEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 85 ~~~~~~~~~~ii~v~d~~~~ 104 (121)
....+..+|++++|+|....
T Consensus 82 ~~~~~~~~D~~ilVvda~~g 101 (195)
T cd01884 82 MITGAAQMDGAILVVSATDG 101 (195)
T ss_pred HHHHhhhCCEEEEEEECCCC
Confidence 77777899999999998764
No 220
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.31 E-value=5e-11 Score=83.43 Aligned_cols=100 Identities=18% Similarity=0.238 Sum_probs=72.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC--cc------hHHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ--PG------LRSIWEK 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~--~~------~~~~~~~ 87 (121)
....++|-|.||||||||++++++...+.. .....|.+.++.++..+...++++||||- .. +....-.
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA----~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~ 242 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVA----PYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAIL 242 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccC----CCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHH
Confidence 457799999999999999999998555542 23446888888999888899999999992 11 1222222
Q ss_pred Hhh-ccCEEEEEEeCCC--cccHHHHHHHHHhhcc
Q 033349 88 YYE-EAHAVVFVIDAAC--PSRFEDSKTALGKKGS 119 (121)
Q Consensus 88 ~~~-~~~~ii~v~d~~~--~~s~~~~~~~l~~i~~ 119 (121)
.++ -.++++|++|.+. -.+++.-..++.+|..
T Consensus 243 AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~ 277 (346)
T COG1084 243 ALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKE 277 (346)
T ss_pred HHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHH
Confidence 233 4678888999876 4677777777777643
No 221
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.31 E-value=4e-11 Score=87.09 Aligned_cols=86 Identities=21% Similarity=0.313 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEE-----------------EEC---CeEEEEEECC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRI-----------------EVS---NSKLVFWDLG 76 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~-----------------~~~---~~~~~i~d~~ 76 (121)
+++|+++|.+++|||||++++++..............|+.|...... ..+ ..++++||+|
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 36899999999999999999997322211111112234444322100 011 2568999999
Q ss_pred CC----cchH---HHHHHHhhccCEEEEEEeCC
Q 033349 77 GQ----PGLR---SIWEKYYEEAHAVVFVIDAA 102 (121)
Q Consensus 77 g~----~~~~---~~~~~~~~~~~~ii~v~d~~ 102 (121)
|- .+.. ..+...++++|++++|+|+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 93 2222 23344478999999999997
No 222
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.30 E-value=3.8e-11 Score=75.29 Aligned_cols=87 Identities=23% Similarity=0.225 Sum_probs=58.4
Q ss_pred EEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC-CeEEEEEECCCCcchH-------HHHHHHhhccC
Q 033349 22 ILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS-NSKLVFWDLGGQPGLR-------SIWEKYYEEAH 93 (121)
Q Consensus 22 vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~i~d~~g~~~~~-------~~~~~~~~~~~ 93 (121)
++|++|+|||||++++.+..... .......|........... +..+.+||+||..... ......++.+|
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAI---VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccc---cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCC
Confidence 58999999999999998721111 1112222333333344444 5789999999965432 34455778999
Q ss_pred EEEEEEeCCCcccHHHHH
Q 033349 94 AVVFVIDAACPSRFEDSK 111 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~ 111 (121)
++++|+|..++.+.....
T Consensus 78 ~il~v~~~~~~~~~~~~~ 95 (163)
T cd00880 78 LILFVVDADLRADEEEEK 95 (163)
T ss_pred EEEEEEeCCCCCCHHHHH
Confidence 999999999987766654
No 223
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.28 E-value=1.8e-11 Score=85.61 Aligned_cols=96 Identities=23% Similarity=0.244 Sum_probs=70.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC------cch-HHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGL-RSIWEKYY 89 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~------~~~-~~~~~~~~ 89 (121)
--++++||+|++|||||++++++..++.. +....|..+....+.+++.++++.|+||- .+- ........
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~seva----~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKSEVA----DYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCcccc----ccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 36899999999999999999998554432 23335666666788999999999999971 111 12334456
Q ss_pred hccCEEEEEEeCCCccc-HHHHHHHHHh
Q 033349 90 EEAHAVVFVIDAACPSR-FEDSKTALGK 116 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~s-~~~~~~~l~~ 116 (121)
++||.+++|.|+..+.+ .+.+.+.|++
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~ 166 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELED 166 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHh
Confidence 89999999999986655 5555555554
No 224
>COG1159 Era GTPase [General function prediction only]
Probab=99.28 E-value=2.8e-11 Score=83.73 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=57.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc--------chHHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP--------GLRSIWEK 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~--------~~~~~~~~ 87 (121)
+.--++++|.|++|||||++++.+..-.+....++.+. ..-..-++.++.++.++||||-. .+......
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR---~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTR---NRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhh---hheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 34568999999999999999999843222111111111 11122344557899999999932 23344455
Q ss_pred HhhccCEEEEEEeCCCc
Q 033349 88 YYEEAHAVVFVIDAACP 104 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~ 104 (121)
.+..+|+++||+|..++
T Consensus 82 sl~dvDlilfvvd~~~~ 98 (298)
T COG1159 82 ALKDVDLILFVVDADEG 98 (298)
T ss_pred HhccCcEEEEEEecccc
Confidence 56899999999998874
No 225
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.28 E-value=6.6e-11 Score=75.27 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=56.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCCCcc----------hHHHHH
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQPG----------LRSIWE 86 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~~~----------~~~~~~ 86 (121)
.|+++|++|+|||||++.+.+ +.+.....++.+... ..+..+ ..+.+||+||... +.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~------~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 73 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTN------RKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIE 73 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhc------CCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHH
Confidence 479999999999999999995 223333344444322 222223 3799999999432 333444
Q ss_pred HHhh---ccCEEEEEEeCCCcc--cHHHHHHHHHh
Q 033349 87 KYYE---EAHAVVFVIDAACPS--RFEDSKTALGK 116 (121)
Q Consensus 87 ~~~~---~~~~ii~v~d~~~~~--s~~~~~~~l~~ 116 (121)
.++. .++++++++|..++. ....+..|+..
T Consensus 74 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~ 108 (170)
T cd01876 74 EYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE 108 (170)
T ss_pred HHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH
Confidence 4443 467889999987653 23344566654
No 226
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.27 E-value=8.6e-11 Score=91.33 Aligned_cols=87 Identities=24% Similarity=0.342 Sum_probs=59.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHH----------HH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS----------IW 85 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~----------~~ 85 (121)
..++|+++|.+|+|||||++++++.... ..+....|+......+..++.++.+||+||...+.. ..
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~----vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~ 77 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR----VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIA 77 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc----cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHH
Confidence 3578999999999999999999872211 111222344434445666678899999999764421 22
Q ss_pred HHHh--hccCEEEEEEeCCCccc
Q 033349 86 EKYY--EEAHAVVFVIDAACPSR 106 (121)
Q Consensus 86 ~~~~--~~~~~ii~v~d~~~~~s 106 (121)
..++ +.+|++++|+|.++.++
T Consensus 78 ~~~l~~~~aD~vI~VvDat~ler 100 (772)
T PRK09554 78 CHYILSGDADLLINVVDASNLER 100 (772)
T ss_pred HHHHhccCCCEEEEEecCCcchh
Confidence 3333 47999999999988654
No 227
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.27 E-value=1.8e-10 Score=79.01 Aligned_cols=86 Identities=17% Similarity=0.163 Sum_probs=54.5
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchH----------HH
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR----------SI 84 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~----------~~ 84 (121)
...++|+++|.+|+|||||++++.+. ... ........|..........++..+.+|||||-.... ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~--~~~-~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE--RKA-ATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC--CCc-ccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 35799999999999999999999872 110 011111234444444556677889999999944221 11
Q ss_pred HHHHhh--ccCEEEEEEeCCC
Q 033349 85 WEKYYE--EAHAVVFVIDAAC 103 (121)
Q Consensus 85 ~~~~~~--~~~~ii~v~d~~~ 103 (121)
...++. ..|++++|..+..
T Consensus 106 I~~~l~~~~idvIL~V~rlD~ 126 (249)
T cd01853 106 IKRYLKKKTPDVVLYVDRLDM 126 (249)
T ss_pred HHHHHhccCCCEEEEEEcCCC
Confidence 223333 4677888766543
No 228
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.26 E-value=9.6e-11 Score=85.24 Aligned_cols=83 Identities=28% Similarity=0.385 Sum_probs=62.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh----ccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchH--------
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV----YSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR-------- 82 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~----~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~-------- 82 (121)
+..+|++++|.|++|||||++++++. .++++|+ |-.+-...+.++|+++.+.||+|-.+..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GT-------TRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGI 287 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGT-------TRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGI 287 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCC-------ccceEEEEEEECCEEEEEEecCCcccCccHHHHHHH
Confidence 46799999999999999999999872 2223332 3333456889999999999999944221
Q ss_pred HHHHHHhhccCEEEEEEeCCCc
Q 033349 83 SIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
..-...++.||.+++|+|.+++
T Consensus 288 eRs~~~i~~ADlvL~v~D~~~~ 309 (454)
T COG0486 288 ERAKKAIEEADLVLFVLDASQP 309 (454)
T ss_pred HHHHHHHHhCCEEEEEEeCCCC
Confidence 1223446899999999999986
No 229
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.26 E-value=1.1e-10 Score=87.52 Aligned_cols=90 Identities=22% Similarity=0.200 Sum_probs=64.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCC----------CC------cccCCCceEEEEEEECCeEEEEEECCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLP----------PD------RIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~----------~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g 77 (121)
...+|+++|..++|||||+.+++.....+. +.. .+ +...|+......+.+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 456899999999999999999975222110 100 00 011223333456777889999999999
Q ss_pred CcchHHHHHHHhhccCEEEEEEeCCCcc
Q 033349 78 QPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 78 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 105 (121)
+..+.......++.+|++++|+|.++..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv 116 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGV 116 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCC
Confidence 9988887777889999999999998753
No 230
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.25 E-value=1e-10 Score=78.72 Aligned_cols=86 Identities=20% Similarity=0.258 Sum_probs=61.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC--------------CC-------CC------CcccCCCceEEEEEEECCeEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVE--------------GL-------PP------DRIVPTVGLNIGRIEVSNSKLV 71 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~--------------~~-------~~------~~~~~t~~~~~~~~~~~~~~~~ 71 (121)
.|+++|..++|||||+.+++...+... +. .. .+...|.......+.+.+..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 379999999999999999975322110 00 00 0111233333456677788999
Q ss_pred EEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 72 FWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 72 i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+||+||+..+.......++.+|++++|+|+++.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~ 113 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKG 113 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCC
Confidence 999999987776666667889999999999874
No 231
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.24 E-value=3.1e-14 Score=92.24 Aligned_cols=96 Identities=24% Similarity=0.390 Sum_probs=83.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECC---eEEEEEECCCCcchHHHHHHHhhc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSN---SKLVFWDLGGQPGLRSIWEKYYEE 91 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~---~~~~i~d~~g~~~~~~~~~~~~~~ 91 (121)
-+|+.|+|.-++|||++++++.. ..|...|..|+|... ..+.+++ +.+++||..||+++..+...+++.
T Consensus 25 L~k~lVig~~~vgkts~i~ryv~------~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyke 98 (229)
T KOG4423|consen 25 LFKVLVIGDLGVGKTSSIKRYVH------QNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKE 98 (229)
T ss_pred hhhhheeeeccccchhHHHHHHH------HHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecC
Confidence 37899999999999999999987 666778889999764 4555555 578999999999999998999999
Q ss_pred cCEEEEEEeCCCcccHHHHHHHHHhhc
Q 033349 92 AHAVVFVIDAACPSRFEDSKTALGKKG 118 (121)
Q Consensus 92 ~~~ii~v~d~~~~~s~~~~~~~l~~i~ 118 (121)
+++..+|+|++...+|+....|..+.-
T Consensus 99 a~~~~iVfdvt~s~tfe~~skwkqdld 125 (229)
T KOG4423|consen 99 AHGAFIVFDVTRSLTFEPVSKWKQDLD 125 (229)
T ss_pred CcceEEEEEccccccccHHHHHHHhcc
Confidence 999999999999999999999998753
No 232
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.24 E-value=5.8e-10 Score=78.33 Aligned_cols=84 Identities=11% Similarity=0.103 Sum_probs=52.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHH-------HHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS-------IWEKY 88 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~ 88 (121)
..++|+++|.+|+||||+++++++..... .......+...........+..+.++||||-..... ....+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~---vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIAT---VSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc---ccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 67999999999999999999998721100 001111122222233445788999999999553321 12222
Q ss_pred h--hccCEEEEEEeCC
Q 033349 89 Y--EEAHAVVFVIDAA 102 (121)
Q Consensus 89 ~--~~~~~ii~v~d~~ 102 (121)
+ ...|++++|.++.
T Consensus 114 l~~~g~DvVLyV~rLD 129 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLD 129 (313)
T ss_pred hhcCCCCEEEEEeccC
Confidence 2 1588999996544
No 233
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.24 E-value=6.8e-11 Score=86.24 Aligned_cols=88 Identities=19% Similarity=0.174 Sum_probs=57.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-------------------EE-EEE------CCe
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-------------------GR-IEV------SNS 68 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-------------------~~-~~~------~~~ 68 (121)
++.++|+++|..++|||||++++.....+.... ..+..-|+.... .. +.. .+.
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~-e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSE-ELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHh-HHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 578999999999999999999997521110000 000001111100 00 000 135
Q ss_pred EEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC
Q 033349 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 69 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
.+.+||+||++++...+......+|++++|+|+++
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANE 115 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCC
Confidence 79999999999988877777788999999999985
No 234
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.24 E-value=7.5e-11 Score=82.04 Aligned_cols=87 Identities=24% Similarity=0.321 Sum_probs=57.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCc------ch------H
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQP------GL------R 82 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~------~~------~ 82 (121)
.+.++++|+|+|++|||||.+++.+. .. .....+...|.--....++-+..++.++||||-- ++ .
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~--kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQ--KV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCC--cc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 35689999999999999999999872 11 1122233223222334555566899999999921 11 1
Q ss_pred HHHHHHhhccCEEEEEEeCCCc
Q 033349 83 SIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+.....+.++|.+++|+|+++.
T Consensus 147 q~~~~a~q~AD~vvVv~Das~t 168 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASAT 168 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCC
Confidence 1223345789999999999963
No 235
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.23 E-value=2.3e-10 Score=88.27 Aligned_cols=93 Identities=18% Similarity=0.081 Sum_probs=68.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCC------C------cccCCCceEEEEEEECCeEEEEEECCCCcch
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPP------D------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~~------~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
...+|+++|..++|||||+++++....... +... + +...|+......+.+++..+.+|||||+.++
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~ 88 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF 88 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence 456899999999999999999975322210 1110 0 1122333445677788899999999999988
Q ss_pred HHHHHHHhhccCEEEEEEeCCCcccHH
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACPSRFE 108 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~~s~~ 108 (121)
.......++.+|++++|+|..+....+
T Consensus 89 ~~~~~~~l~~~D~~ilVvda~~g~~~~ 115 (689)
T TIGR00484 89 TVEVERSLRVLDGAVAVLDAVGGVQPQ 115 (689)
T ss_pred hHHHHHHHHHhCEEEEEEeCCCCCChh
Confidence 777888899999999999998764444
No 236
>PTZ00258 GTP-binding protein; Provisional
Probab=99.23 E-value=3.2e-10 Score=82.02 Aligned_cols=84 Identities=20% Similarity=0.284 Sum_probs=58.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-----------------eEEEEEECCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG 77 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g 77 (121)
...++++++|.|++|||||++++++..... .+....|+.++...+.+.+ .++.++|+||
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v----~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPA----ENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccc----cCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 456899999999999999999997632111 1223345555555555442 3589999999
Q ss_pred Cc-------chHHHHHHHhhccCEEEEEEeCC
Q 033349 78 QP-------GLRSIWEKYYEEAHAVVFVIDAA 102 (121)
Q Consensus 78 ~~-------~~~~~~~~~~~~~~~ii~v~d~~ 102 (121)
-. .+...+...++++|++++|+|..
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 22 23334455678999999999974
No 237
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.22 E-value=3.1e-10 Score=85.10 Aligned_cols=89 Identities=19% Similarity=0.178 Sum_probs=63.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCC----------CC--c----ccCCCceEEEEEEECCeEEEEEECCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLP----------PD--R----IVPTVGLNIGRIEVSNSKLVFWDLGG 77 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~----------~~--~----~~~t~~~~~~~~~~~~~~~~i~d~~g 77 (121)
+..+|+++|.+++|||||+.+++...+.+. +.. .+ . ...|+......+.+.+..+.+|||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 457899999999999999999864221110 000 00 0 11122223345667789999999999
Q ss_pred CcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 78 QPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 78 ~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+..+.......++.+|++++|+|.++.
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~g 116 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKG 116 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCC
Confidence 998887777788999999999999874
No 238
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.22 E-value=1.6e-10 Score=83.92 Aligned_cols=83 Identities=27% Similarity=0.290 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc---------hHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG---------LRSIWEKY 88 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~---------~~~~~~~~ 88 (121)
..|+++|-|+||||||.+++++....+. .+....|-...+....+.+..+.++||+|-+. ........
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV---~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV---SDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe---ecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 4699999999999999999987321111 11222333444667888888899999999432 23344455
Q ss_pred hhccCEEEEEEeCCC
Q 033349 89 YEEAHAVVFVIDAAC 103 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~ 103 (121)
+..||+++||+|...
T Consensus 81 i~eADvilfvVD~~~ 95 (444)
T COG1160 81 IEEADVILFVVDGRE 95 (444)
T ss_pred HHhCCEEEEEEeCCC
Confidence 679999999999876
No 239
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.20 E-value=1.1e-10 Score=77.33 Aligned_cols=78 Identities=15% Similarity=0.275 Sum_probs=46.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCce---E--EEEEEEC-CeEEEEEECCCCcch----HHHH-
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL---N--IGRIEVS-NSKLVFWDLGGQPGL----RSIW- 85 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~---~--~~~~~~~-~~~~~i~d~~g~~~~----~~~~- 85 (121)
++||+++|++|+|||||++++++ ........++.+. . ...+... ...+.+||+||.... ....
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g------~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~ 74 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRG------VGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLE 74 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhc------cCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHH
Confidence 37899999999999999999987 2221111122221 0 1111111 246899999996432 1111
Q ss_pred HHHhhccCEEEEEEe
Q 033349 86 EKYYEEAHAVVFVID 100 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d 100 (121)
...+..+|+++++.+
T Consensus 75 ~~~~~~~d~~l~v~~ 89 (197)
T cd04104 75 EMKFSEYDFFIIISS 89 (197)
T ss_pred HhCccCcCEEEEEeC
Confidence 222467888888743
No 240
>PRK12736 elongation factor Tu; Reviewed
Probab=99.20 E-value=3.1e-10 Score=82.50 Aligned_cols=91 Identities=15% Similarity=0.121 Sum_probs=61.9
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CCCC---------C--cccCCCceEEEEEEECCeEEEEEECCCCcch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLPP---------D--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~-~~~~---------~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
.++.++|+++|..++|||||+.++++...+.. +.+. . +...|+......+..++..+.++|+||++++
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 56789999999999999999999986321110 0000 0 1122333322333334578999999999887
Q ss_pred HHHHHHHhhccCEEEEEEeCCCc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.......+..+|++++|+|..+.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g 111 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDG 111 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 66555556789999999998763
No 241
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.19 E-value=2.8e-10 Score=82.76 Aligned_cols=90 Identities=19% Similarity=0.171 Sum_probs=61.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CCC---------C--CcccCCCceEEEEEEECCeEEEEEECCCCcch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLP---------P--DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~-~~~---------~--~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
.++.++|+++|..++|||||+.+++....... ... . .+...|+......+..++..+.+||+||+++|
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 46789999999999999999999974211100 000 0 01222333333334444578999999999988
Q ss_pred HHHHHHHhhccCEEEEEEeCCC
Q 033349 82 RSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
..........+|++++|+|+.+
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 7655555678899999999987
No 242
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.19 E-value=1.9e-10 Score=80.26 Aligned_cols=97 Identities=23% Similarity=0.378 Sum_probs=69.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCC-------CcchHHHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGG-------QPGLRSIWEK 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g-------~~~~~~~~~~ 87 (121)
....+.+||.|++|||||++++..+.+.+.... ..|+.+++..+.+++ .++.+-|.|| ..-+...+..
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKpkVa~Ya----FTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr 270 (366)
T KOG1489|consen 195 SIADVGLVGFPNAGKSTLLNALSRAKPKVAHYA----FTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR 270 (366)
T ss_pred eecccceecCCCCcHHHHHHHhhccCCcccccc----eeeeccccceeeccccceeEeccCccccccccccCcccHHHHH
Confidence 345688999999999999999998655543222 234444444566666 4599999998 2234456677
Q ss_pred HhhccCEEEEEEeCCCc---ccHHHHHHHHHh
Q 033349 88 YYEEAHAVVFVIDAACP---SRFEDSKTALGK 116 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~---~s~~~~~~~l~~ 116 (121)
+++.|+.++||+|++.+ +-++.++.+..+
T Consensus 271 HiER~~~l~fVvD~s~~~~~~p~~~~~lL~~E 302 (366)
T KOG1489|consen 271 HIERCKGLLFVVDLSGKQLRNPWQQLQLLIEE 302 (366)
T ss_pred HHHhhceEEEEEECCCcccCCHHHHHHHHHHH
Confidence 77999999999999988 667766655444
No 243
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.19 E-value=1.1e-10 Score=85.29 Aligned_cols=91 Identities=21% Similarity=0.245 Sum_probs=57.4
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE---------------------C-----
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV---------------------S----- 66 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~----- 66 (121)
..++.++|+++|+.++|||||+.++.....+... -..+...|+........+ .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~-~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHS-EELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCH-hHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 3567899999999999999999999652111000 000111222211100000 0
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
...+.+||+||++++..........+|++++|+|++++
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~ 121 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEP 121 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 25789999999988766555555678999999999854
No 244
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.19 E-value=8.4e-11 Score=80.67 Aligned_cols=88 Identities=24% Similarity=0.417 Sum_probs=62.9
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE-EEEEEECCeEEEEEECCCCc-------chHHHH
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN-IGRIEVSNSKLVFWDLGGQP-------GLRSIW 85 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~i~d~~g~~-------~~~~~~ 85 (121)
.+++++++++|..|+|||||++++.. ++. .....+..+.... ....++.+..+.+||+||-+ ++++..
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~--~~~--~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~ 111 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQ--GEV--KEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLY 111 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHh--ccC--ceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHH
Confidence 56889999999999999999999985 111 1111222222222 22344556789999999943 478888
Q ss_pred HHHhhccCEEEEEEeCCCcc
Q 033349 86 EKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~ 105 (121)
..++...|.++++.+..|+.
T Consensus 112 ~d~l~~~DLvL~l~~~~dra 131 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRA 131 (296)
T ss_pred HHHhhhccEEEEeccCCCcc
Confidence 88999999999999988863
No 245
>PRK12735 elongation factor Tu; Reviewed
Probab=99.19 E-value=3.1e-10 Score=82.56 Aligned_cols=91 Identities=22% Similarity=0.199 Sum_probs=61.6
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC-CCC---------CC--cccCCCceEEEEEEECCeEEEEEECCCCcch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE-GLP---------PD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~-~~~---------~~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
.++.++|+++|..++|||||+.+++....... ... .. +..-|+......+..++..+.++|+||++++
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 46789999999999999999999986211110 000 00 1111222222334345578999999999877
Q ss_pred HHHHHHHhhccCEEEEEEeCCCc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.......+..+|++++|+|+.+.
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g 111 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCC
Confidence 66556667889999999998763
No 246
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.19 E-value=2.1e-10 Score=79.63 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=54.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCe-----------------EEEEEECCCCc---
Q 033349 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS-----------------KLVFWDLGGQP--- 79 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~i~d~~g~~--- 79 (121)
++++|.+++|||||++++++.... ..+....|+.++...+.+.+. .+.++|+||-.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~----~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a 76 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE----AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 76 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc----cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCC
Confidence 579999999999999999883221 112234565666555555442 49999999921
Q ss_pred ----chHHHHHHHhhccCEEEEEEeCC
Q 033349 80 ----GLRSIWEKYYEEAHAVVFVIDAA 102 (121)
Q Consensus 80 ----~~~~~~~~~~~~~~~ii~v~d~~ 102 (121)
.....+...++++|++++|+|..
T Consensus 77 ~~~~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 77 SKGEGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred chhhHHHHHHHHHHHhCCEEEEEEeCc
Confidence 23334455568899999999975
No 247
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.19 E-value=2e-10 Score=72.31 Aligned_cols=72 Identities=26% Similarity=0.317 Sum_probs=49.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC----cchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----PGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~----~~~~~~~~~~~~~~~ 93 (121)
-|+++||+.|+|||||++++.+ ... .+..|.. +.+.+ .++||||. ..+...+...-.+||
T Consensus 2 krimliG~~g~GKTTL~q~L~~------~~~--~~~KTq~-----i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad 65 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNG------EEI--RYKKTQA-----IEYYD---NTIDTPGEYIENPRFYHALIVTAQDAD 65 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcC------CCC--CcCccce-----eEecc---cEEECChhheeCHHHHHHHHHHHhhCC
Confidence 4899999999999999999986 221 2333333 22333 35999992 334444444457999
Q ss_pred EEEEEEeCCCcc
Q 033349 94 AVVFVIDAACPS 105 (121)
Q Consensus 94 ~ii~v~d~~~~~ 105 (121)
.++++.|.+++.
T Consensus 66 ~V~ll~dat~~~ 77 (143)
T PF10662_consen 66 VVLLLQDATEPR 77 (143)
T ss_pred EEEEEecCCCCC
Confidence 999999998864
No 248
>CHL00071 tufA elongation factor Tu
Probab=99.18 E-value=6.1e-10 Score=81.36 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=62.8
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC----------Cc--ccCCCceEEEEEEECCeEEEEEECCCCcch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP----------DR--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~----------~~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
+++.++|+++|..++|||||+++++.......+... .+ ...|+......+..++.++.++|+||+.++
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 467899999999999999999999874221100000 01 111222222334445678999999999888
Q ss_pred HHHHHHHhhccCEEEEEEeCCCc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.......+..+|++++|+|..+.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g 111 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADG 111 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCC
Confidence 77666777899999999998764
No 249
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.18 E-value=2.5e-10 Score=84.74 Aligned_cols=91 Identities=18% Similarity=0.173 Sum_probs=64.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCCC---------------CcccCCCceEEEEEE
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPP---------------DRIVPTVGLNIGRIE 64 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--------------~~~~---------------~~~~~t~~~~~~~~~ 64 (121)
.++.++|+++|..++|||||+.+++...+.+. +... .+...|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 46789999999999999999999976432211 1100 011123333344555
Q ss_pred ECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 65 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.++.++.++||||++++.......+..+|++++|+|+.+.
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G 143 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKG 143 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 6678899999999998866555557899999999998753
No 250
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.17 E-value=4.6e-10 Score=80.45 Aligned_cols=81 Identities=25% Similarity=0.397 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-----------------eEEEEEECCCCc-
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP- 79 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~- 79 (121)
++++++|.|++|||||++++++..... .+....|+.++...+.+.+ .++.++|+||-.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v----~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~ 78 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEA----ANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVK 78 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCee----cccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCC
Confidence 689999999999999999998732111 1223345555554444443 258999999922
Q ss_pred ------chHHHHHHHhhccCEEEEEEeCC
Q 033349 80 ------GLRSIWEKYYEEAHAVVFVIDAA 102 (121)
Q Consensus 80 ------~~~~~~~~~~~~~~~ii~v~d~~ 102 (121)
.+...+...++++|++++|+|..
T Consensus 79 ~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 79 GASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred CCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 22334455568999999999985
No 251
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.16 E-value=4.2e-10 Score=82.14 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=61.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCC----C-----------CcccCCCceEEEEEEECCe
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLP----P-----------DRIVPTVGLNIGRIEVSNS 68 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~--------------~~~----~-----------~~~~~t~~~~~~~~~~~~~ 68 (121)
++|+++|..++|||||+.+++...+... +.. . .+...|+......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 5899999999999999999975332211 110 0 0111234444455666678
Q ss_pred EEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 69 KLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 69 ~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
++.++|+||++++.......+..+|++++|+|..+.
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G 116 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKG 116 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 899999999998876556677899999999998754
No 252
>PLN03126 Elongation factor Tu; Provisional
Probab=99.16 E-value=6.7e-10 Score=82.45 Aligned_cols=91 Identities=19% Similarity=0.178 Sum_probs=63.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC----------c--ccCCCceEEEEEEECCeEEEEEECCCCcch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD----------R--IVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~----------~--~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
.++.++|+++|..++|||||+.+++.....+.+.... + ..-|+......+..++..+.++|+||+++|
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f 157 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY 157 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence 4578999999999999999999998632221111111 1 111222222344556688999999999988
Q ss_pred HHHHHHHhhccCEEEEEEeCCCc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.......+..+|++++|+|..+.
T Consensus 158 ~~~~~~g~~~aD~ailVVda~~G 180 (478)
T PLN03126 158 VKNMITGAAQMDGAILVVSGADG 180 (478)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 77666667889999999998764
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.15 E-value=6.6e-10 Score=85.07 Aligned_cols=97 Identities=16% Similarity=0.116 Sum_probs=66.8
Q ss_pred HHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCCCC---------------cccCCCce
Q 033349 8 LWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPPD---------------RIVPTVGL 58 (121)
Q Consensus 8 ~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--------------~~~~~---------------~~~~t~~~ 58 (121)
.......++.++|+++|.+++|||||+.+++.....+. +..++ +..-|+..
T Consensus 15 ~~~~~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~ 94 (632)
T PRK05506 15 YLAQHERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDV 94 (632)
T ss_pred HHhhccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCcee
Confidence 34444556789999999999999999999987432221 11000 01123333
Q ss_pred EEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 59 NIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 59 ~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
....+..++.++.++|+||++++.......+..+|++++|+|..+.
T Consensus 95 ~~~~~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g 140 (632)
T PRK05506 95 AYRYFATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKG 140 (632)
T ss_pred eeeEEccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 3445556677899999999988765555567899999999998654
No 254
>PRK12739 elongation factor G; Reviewed
Probab=99.14 E-value=1.1e-09 Score=84.54 Aligned_cols=92 Identities=17% Similarity=0.082 Sum_probs=68.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCC------------CcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~~------------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
....+|+++|..++|||||+++++...+... +... .+..-|+......+.+++..+.++||||+..
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 3567899999999999999999976322210 1111 1222344444566777889999999999988
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCccc
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~s 106 (121)
+.......++.+|++++|+|..+...
T Consensus 86 f~~e~~~al~~~D~~ilVvDa~~g~~ 111 (691)
T PRK12739 86 FTIEVERSLRVLDGAVAVFDAVSGVE 111 (691)
T ss_pred HHHHHHHHHHHhCeEEEEEeCCCCCC
Confidence 87788888899999999999887543
No 255
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.14 E-value=5e-10 Score=77.94 Aligned_cols=61 Identities=25% Similarity=0.360 Sum_probs=39.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCC----CCCcccCCCceEEE--EEEECC--eEEEEEECCC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----PPDRIVPTVGLNIG--RIEVSN--SKLVFWDLGG 77 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~----~~~~~~~t~~~~~~--~~~~~~--~~~~i~d~~g 77 (121)
.++|+++|.+|+|||||++++.+..-..... ......+|.+.... .+..++ ..+.+|||||
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpG 72 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPG 72 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCC
Confidence 6899999999999999999998721100000 01123455554433 344455 5799999999
No 256
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.12 E-value=5.4e-10 Score=86.63 Aligned_cols=89 Identities=15% Similarity=0.012 Sum_probs=62.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCC---------CCCC---cccCCCceEEE----EEEECCeEEEEEECCCCc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEG---------LPPD---RIVPTVGLNIG----RIEVSNSKLVFWDLGGQP 79 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~---------~~~~---~~~~t~~~~~~----~~~~~~~~~~i~d~~g~~ 79 (121)
...+|+++|+.++|||||+.+++...+.+.. .+.. +...|+..... .+...+..+.+|||||+.
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 4578999999999999999999763211100 1111 12234443321 133456889999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCc
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
++.......++.+|++++|+|..+.
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g 122 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEG 122 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCC
Confidence 8887778888999999999998773
No 257
>PRK00049 elongation factor Tu; Reviewed
Probab=99.12 E-value=1.1e-09 Score=79.73 Aligned_cols=92 Identities=21% Similarity=0.167 Sum_probs=63.2
Q ss_pred ccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCC-CC---------CC--cccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 13 FTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG-LP---------PD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 13 ~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~-~~---------~~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
..++.++|+++|..++|||||+.+++....+..+ .. .. +..-|+......+..++.++.++|+||+.+
T Consensus 8 ~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHH
Confidence 3567899999999999999999999863211100 00 00 111222222333444567899999999988
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCc
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+.......+..+|++++|+|..+.
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g 111 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADG 111 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCC
Confidence 776666667899999999998764
No 258
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.10 E-value=1.2e-09 Score=83.39 Aligned_cols=89 Identities=20% Similarity=0.153 Sum_probs=61.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCc--ccCCCceEEEEEEE-CCeEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDR--IVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~--~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
-|+++|..++|||||++++++.. . ..+..+ ...|+......+.. ++..+.+||+||++++.......+..+|++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~--~-dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVN--A-DRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC--C-ccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 37899999999999999998621 1 111112 23444443333433 346789999999998876656667899999
Q ss_pred EEEEeCCC---cccHHHH
Q 033349 96 VFVIDAAC---PSRFEDS 110 (121)
Q Consensus 96 i~v~d~~~---~~s~~~~ 110 (121)
++|+|+.+ +.+.+.+
T Consensus 79 lLVVda~eg~~~qT~ehl 96 (614)
T PRK10512 79 LLVVACDDGVMAQTREHL 96 (614)
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 99999877 4444443
No 259
>PLN03127 Elongation factor Tu; Provisional
Probab=99.08 E-value=3.4e-09 Score=78.25 Aligned_cols=91 Identities=18% Similarity=0.101 Sum_probs=62.7
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC------------CCCcccCCCceEEEEEEECCeEEEEEECCCCcch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL------------PPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
.++.++|+++|..++|||||+.++.+...+.... ...+...|+......++.++.++.++|+||+.++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 5678999999999999999999997421110000 0001222444434445555678999999999887
Q ss_pred HHHHHHHhhccCEEEEEEeCCCc
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.......+..+|++++|+|..+.
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g 160 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDG 160 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCC
Confidence 66555556789999999998764
No 260
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.08 E-value=1.1e-09 Score=83.34 Aligned_cols=77 Identities=29% Similarity=0.364 Sum_probs=52.8
Q ss_pred cCCCCCHHHHHHHHHhhccCCCCCCCCcccC--CCceEEEEEEECCeEEEEEECCCCcchHH------HHHHHh--hccC
Q 033349 24 GIDKAGKTTLLEKLKSVYSNVEGLPPDRIVP--TVGLNIGRIEVSNSKLVFWDLGGQPGLRS------IWEKYY--EEAH 93 (121)
Q Consensus 24 G~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~i~d~~g~~~~~~------~~~~~~--~~~~ 93 (121)
|.+|+|||||++++++ ........| |+......+.+++.++++||+||+.++.. ....++ +.+|
T Consensus 1 G~pNvGKSSL~N~Ltg------~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG------ANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhC------CCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCC
Confidence 8999999999999987 222111222 33333345667788899999999876532 233333 3789
Q ss_pred EEEEEEeCCCccc
Q 033349 94 AVVFVIDAACPSR 106 (121)
Q Consensus 94 ~ii~v~d~~~~~s 106 (121)
++++|+|.++.+.
T Consensus 75 vvI~VvDat~ler 87 (591)
T TIGR00437 75 LVVNVVDASNLER 87 (591)
T ss_pred EEEEEecCCcchh
Confidence 9999999987543
No 261
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.06 E-value=1.3e-09 Score=80.44 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=65.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC----------------CCC-----C------CcccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----------------GLP-----P------DRIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~----------------~~~-----~------~~~~~t~~~~~~~~~~~ 66 (121)
.+..++++++|..++|||||+.+++...+... +.+ . .+...|+......+..+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~ 83 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence 46789999999999999999999976322111 000 0 01112333334455666
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+..+.++|+||+.+|.......+..+|++++|+|..+.
T Consensus 84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G 121 (446)
T PTZ00141 84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAG 121 (446)
T ss_pred CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCC
Confidence 78899999999998887777777899999999998763
No 262
>PRK12740 elongation factor G; Reviewed
Probab=99.04 E-value=3.3e-09 Score=81.73 Aligned_cols=88 Identities=19% Similarity=0.127 Sum_probs=65.5
Q ss_pred EcCCCCCHHHHHHHHHhhccCCCC--------CCCC------cccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHH
Q 033349 23 LGIDKAGKTTLLEKLKSVYSNVEG--------LPPD------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 23 vG~~~~GKTsl~~~~~~~~~~~~~--------~~~~------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 88 (121)
+|..++|||||+.+++...+.+.. ...+ +...|++.....+.+.+..+.+||+||+..+.......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 689999999999999664322110 0001 23345555566788888999999999999887777888
Q ss_pred hhccCEEEEEEeCCCcccHHHH
Q 033349 89 YEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
++.+|++++|+|.++.......
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~ 102 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTE 102 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHH
Confidence 8999999999999887665544
No 263
>PRK00007 elongation factor G; Reviewed
Probab=99.04 E-value=5.4e-09 Score=80.85 Aligned_cols=91 Identities=18% Similarity=0.051 Sum_probs=65.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCC------------CcccCCCceEEEEEEECCeEEEEEECCCCcc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPP------------DRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~~------------~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~ 80 (121)
....+|+++|..++|||||+++++...+... +... .+..-|+......+.+++..+.++||||+..
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 3456899999999999999999975322210 1011 0112233333456777889999999999988
Q ss_pred hHHHHHHHhhccCEEEEEEeCCCcc
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~~~~ 105 (121)
+.......++.+|++++|+|....-
T Consensus 88 f~~ev~~al~~~D~~vlVvda~~g~ 112 (693)
T PRK00007 88 FTIEVERSLRVLDGAVAVFDAVGGV 112 (693)
T ss_pred HHHHHHHHHHHcCEEEEEEECCCCc
Confidence 7766777788999999999987643
No 264
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.5e-09 Score=77.65 Aligned_cols=86 Identities=21% Similarity=0.331 Sum_probs=60.1
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc----eEEEEEEECCeEEEEEECCCCcc-----hH--
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG----LNIGRIEVSNSKLVFWDLGGQPG-----LR-- 82 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~~~~i~d~~g~~~-----~~-- 82 (121)
.++.++|+++|+||+|||||++++.+ .+. .-+.|.-| .-...++++|.++.+.||+|-.+ ..
T Consensus 265 lq~gl~iaIvGrPNvGKSSLlNaL~~--~dr-----sIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~ 337 (531)
T KOG1191|consen 265 LQSGLQIAIVGRPNVGKSSLLNALSR--EDR-----SIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEAL 337 (531)
T ss_pred hhcCCeEEEEcCCCCCHHHHHHHHhc--CCc-----eEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHH
Confidence 35679999999999999999999987 221 12222222 22356778999999999999433 11
Q ss_pred --HHHHHHhhccCEEEEEEeC--CCccc
Q 033349 83 --SIWEKYYEEAHAVVFVIDA--ACPSR 106 (121)
Q Consensus 83 --~~~~~~~~~~~~ii~v~d~--~~~~s 106 (121)
...+..++.+|++++|+|. ++-++
T Consensus 338 gI~rA~k~~~~advi~~vvda~~~~t~s 365 (531)
T KOG1191|consen 338 GIERARKRIERADVILLVVDAEESDTES 365 (531)
T ss_pred hHHHHHHHHhhcCEEEEEeccccccccc
Confidence 2334456889999999998 44333
No 265
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.04 E-value=1.7e-09 Score=79.81 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=64.5
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC----------------C-----CC------cccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----------------P-----PD------RIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~----------------~-----~~------~~~~t~~~~~~~~~~~ 66 (121)
.++.++++++|..++|||||+.+++...+..... + .+ +..-|+......+..+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3578999999999999999999987532211000 0 00 1112333333445555
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
+..+.++|+|||++|.......+..+|++++|+|+.+
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEccc
Confidence 6889999999999998877888899999999999986
No 266
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.03 E-value=7.9e-09 Score=78.70 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=53.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcch----------HHHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL----------RSIWE 86 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~----------~~~~~ 86 (121)
.++|+++|.+|+||||+++.+++. .... .......|...........+..+.++||||-... ...+.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGe--kvf~-vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGE--VKFS-TDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcc--cccc-ccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHH
Confidence 478999999999999999999872 1100 0111123444333344557788999999994321 11223
Q ss_pred HHhh--ccCEEEEEEeCCC
Q 033349 87 KYYE--EAHAVVFVIDAAC 103 (121)
Q Consensus 87 ~~~~--~~~~ii~v~d~~~ 103 (121)
.++. ..|++++|.++..
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~ 213 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDM 213 (763)
T ss_pred HHHhcCCCCEEEEEEeCCC
Confidence 3333 4789999988754
No 267
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.02 E-value=1e-08 Score=67.62 Aligned_cols=87 Identities=28% Similarity=0.371 Sum_probs=57.5
Q ss_pred hhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECCeEEEEEECCC----------C
Q 033349 11 YIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGG----------Q 78 (121)
Q Consensus 11 ~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~d~~g----------~ 78 (121)
.++......|+++|-+++|||||++++++ ......+..|-|.. +..+.+++. +.++|.|| .
T Consensus 18 ~~P~~~~~EIaF~GRSNVGKSSlIN~l~~------~k~LArtSktPGrTq~iNff~~~~~-~~lVDlPGYGyAkv~k~~~ 90 (200)
T COG0218 18 QYPEDDLPEIAFAGRSNVGKSSLINALTN------QKNLARTSKTPGRTQLINFFEVDDE-LRLVDLPGYGYAKVPKEVK 90 (200)
T ss_pred hCCCCCCcEEEEEccCcccHHHHHHHHhC------CcceeecCCCCCccceeEEEEecCc-EEEEeCCCcccccCCHHHH
Confidence 34555678999999999999999999998 33223444444433 234444443 88999999 2
Q ss_pred cchHHHHHHHhh---ccCEEEEEEeCCCc
Q 033349 79 PGLRSIWEKYYE---EAHAVVFVIDAACP 104 (121)
Q Consensus 79 ~~~~~~~~~~~~---~~~~ii~v~d~~~~ 104 (121)
+.....+..|++ +..+++.++|+.-+
T Consensus 91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~ 119 (200)
T COG0218 91 EKWKKLIEEYLEKRANLKGVVLLIDARHP 119 (200)
T ss_pred HHHHHHHHHHHhhchhheEEEEEEECCCC
Confidence 334445555554 35677788887553
No 268
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.01 E-value=9.4e-10 Score=67.04 Aligned_cols=34 Identities=21% Similarity=0.101 Sum_probs=26.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCccc-CCCc
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-PTVG 57 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~-~t~~ 57 (121)
+|++++|+.|+|||+|+.++.. ..+...+. +|++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~------~~~~~~~~~~t~~ 35 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQ------FPFDYVPTVFTIG 35 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhc------CCccccCceehhh
Confidence 5899999999999999999977 55554444 5555
No 269
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=4.5e-09 Score=74.96 Aligned_cols=84 Identities=23% Similarity=0.391 Sum_probs=60.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC------------------eEEEEEECCC-
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------------------SKLVFWDLGG- 77 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------------------~~~~i~d~~g- 77 (121)
.+++.++|.|++|||||.++++.+-.+. -+....|+.++...+.+.+ ..+.++|++|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~----aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGL 77 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEI----ANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGL 77 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccc----cCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEeccc
Confidence 4789999999999999999998833222 2334456666544333321 4589999988
Q ss_pred ------CcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 78 ------QPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 78 ------~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.+.+...+...++++|+++.|+|+.+.
T Consensus 78 V~GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d 110 (372)
T COG0012 78 VKGASKGEGLGNKFLDNIREVDAIIHVVRCFGD 110 (372)
T ss_pred CCCcccCCCcchHHHHhhhhcCeEEEEEEecCC
Confidence 345566777888999999999998743
No 270
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.99 E-value=6.8e-09 Score=70.27 Aligned_cols=86 Identities=26% Similarity=0.281 Sum_probs=54.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh-ccCCCCCC------------CCcccC----CCceE-----------------EEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV-YSNVEGLP------------PDRIVP----TVGLN-----------------IGRIE 64 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~-~~~~~~~~------------~~~~~~----t~~~~-----------------~~~~~ 64 (121)
|++++|+.++|||||+.++... +....+.. .....+ ..|+. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 6899999999999999999851 11100000 000000 11111 12334
Q ss_pred ECCeEEEEEECCCCcchHHHHHHHhh--ccCEEEEEEeCCCc
Q 033349 65 VSNSKLVFWDLGGQPGLRSIWEKYYE--EAHAVVFVIDAACP 104 (121)
Q Consensus 65 ~~~~~~~i~d~~g~~~~~~~~~~~~~--~~~~ii~v~d~~~~ 104 (121)
..+..+.++|+||++++.......+. .+|++++|+|....
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g 122 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAG 122 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCC
Confidence 44577999999999988665444443 68999999998764
No 271
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.98 E-value=4.6e-09 Score=76.43 Aligned_cols=91 Identities=23% Similarity=0.180 Sum_probs=62.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC----------cchH-HHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ----------PGLR-SIW 85 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~----------~~~~-~~~ 85 (121)
.+||+++|-|++|||||++++++.-..+. .+.-..|...-...+++++..+.++||+|- +.|. ...
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv---~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIV---SDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEe---cCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 59999999999999999999987211111 011122333334577888999999999992 2222 233
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHH
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
...+..+|.+++|.|.+++-+-++.
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~ 279 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL 279 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH
Confidence 4556889999999999987554443
No 272
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.97 E-value=8.3e-09 Score=72.83 Aligned_cols=84 Identities=26% Similarity=0.441 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEE-CCeEEEEEECCC-----C--cchHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEV-SNSKLVFWDLGG-----Q--PGLRSIWEKYY 89 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~d~~g-----~--~~~~~~~~~~~ 89 (121)
.-+.+||.|++|||||++.++.+.+.+....-....|++|+ +.. .+..+.+-|.|| + .-+...+..++
T Consensus 160 ADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGv----V~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHI 235 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGV----VRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHI 235 (369)
T ss_pred cccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccE----EEecCCCcEEEecCcccccccccCCCccHHHHHHH
Confidence 34678999999999999999986666543333344455553 333 446799999998 1 13445667778
Q ss_pred hccCEEEEEEeCCCcc
Q 033349 90 EEAHAVVFVIDAACPS 105 (121)
Q Consensus 90 ~~~~~ii~v~d~~~~~ 105 (121)
+.|.+++.|+|++..+
T Consensus 236 ERt~vL~hviD~s~~~ 251 (369)
T COG0536 236 ERTRVLLHVIDLSPID 251 (369)
T ss_pred HhhheeEEEEecCccc
Confidence 9999999999998644
No 273
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.96 E-value=5.2e-09 Score=75.29 Aligned_cols=84 Identities=17% Similarity=0.317 Sum_probs=45.0
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC-cccCCCceEEEEEEECC-eEEEEEECCCCcchHHHHHHH----
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD-RIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKY---- 88 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~-~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~---- 88 (121)
+..++|+|+|.+|+|||||++++.+.-++..+.-.. ..+.|... ..+.... -++.+||+||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~--~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~ 110 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEP--TPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV 110 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS---EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCC--eeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence 367999999999999999999997732322111111 11222222 2333333 358999999954322222223
Q ss_pred -hhccCEEEEEEe
Q 033349 89 -YEEAHAVVFVID 100 (121)
Q Consensus 89 -~~~~~~ii~v~d 100 (121)
+...|.++++.+
T Consensus 111 ~~~~yD~fiii~s 123 (376)
T PF05049_consen 111 KFYRYDFFIIISS 123 (376)
T ss_dssp TGGG-SEEEEEES
T ss_pred cccccCEEEEEeC
Confidence 457898888775
No 274
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.93 E-value=1.6e-08 Score=72.70 Aligned_cols=83 Identities=20% Similarity=0.291 Sum_probs=58.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-----------------eEEEEEECCCCc-
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGGQP- 79 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g~~- 79 (121)
+++.++|.|++|||||.+.+++... +...+....|+.++...+.+.+ ..+.+.|.||-.
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~---~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~ 79 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLG---NEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG 79 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCc---cccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc
Confidence 7899999999999999999988332 0111223345565555555443 358999999832
Q ss_pred ------chHHHHHHHhhccCEEEEEEeCCC
Q 033349 80 ------GLRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 80 ------~~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
.....+...++.+|+++.|+|..+
T Consensus 80 gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 80 GASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred chhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 244466677899999999999854
No 275
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.92 E-value=2e-08 Score=76.12 Aligned_cols=87 Identities=22% Similarity=0.287 Sum_probs=61.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC------cchHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ------PGLRSIWEKYY 89 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~------~~~~~~~~~~~ 89 (121)
.+.+++++|.||+|||||.+++++.... -.+-...|++-....+..++..+++.|+||- ..=+.+.+.++
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~----VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~l 77 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQK----VGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFL 77 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCce----ecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHH
Confidence 3567999999999999999999983211 1122334555556677778888999999992 11134445555
Q ss_pred h--ccCEEEEEEeCCCccc
Q 033349 90 E--EAHAVVFVIDAACPSR 106 (121)
Q Consensus 90 ~--~~~~ii~v~d~~~~~s 106 (121)
. +.|+++-|+|.++-++
T Consensus 78 l~~~~D~ivnVvDAtnLeR 96 (653)
T COG0370 78 LEGKPDLIVNVVDATNLER 96 (653)
T ss_pred hcCCCCEEEEEcccchHHH
Confidence 3 5799999999998544
No 276
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.92 E-value=1.8e-08 Score=78.39 Aligned_cols=89 Identities=16% Similarity=0.047 Sum_probs=60.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCC------CC------cccCCCceEEEEEEE----CCeEEEEEECCCCc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLP------PD------RIVPTVGLNIGRIEV----SNSKLVFWDLGGQP 79 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~------~~------~~~~t~~~~~~~~~~----~~~~~~i~d~~g~~ 79 (121)
+.-+|+++|+.++|||||+.+++...+...... .+ +..-|+......+.+ .+..+.++||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 345699999999999999999976332211100 00 001122222222322 35779999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCc
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
++.......++.+|++++|+|..+.
T Consensus 99 df~~~~~~~l~~~D~avlVvda~~g 123 (731)
T PRK07560 99 DFGGDVTRAMRAVDGAIVVVDAVEG 123 (731)
T ss_pred ChHHHHHHHHHhcCEEEEEEECCCC
Confidence 9888888888999999999998764
No 277
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.89 E-value=3.1e-08 Score=70.64 Aligned_cols=70 Identities=24% Similarity=0.432 Sum_probs=57.7
Q ss_pred ccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcc----------cHHHHHHHHHhhccCC
Q 033349 52 IVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS----------RFEDSKTALGKKGSSE 121 (121)
Q Consensus 52 ~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~----------s~~~~~~~l~~i~~~~ 121 (121)
..+|.|+....+.+++.++.++|++||..-+.-|..++.++++++||+++++-+ ...+...++..|++++
T Consensus 179 R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~ 258 (354)
T KOG0082|consen 179 RVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNK 258 (354)
T ss_pred ccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCc
Confidence 457888888899999999999999999888889999999999999999987632 3555567777777653
No 278
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.88 E-value=4e-08 Score=77.53 Aligned_cols=91 Identities=13% Similarity=0.041 Sum_probs=61.8
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCC------C------cccCCCceEEEEEEE----------------C
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPP------D------RIVPTVGLNIGRIEV----------------S 66 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~------~------~~~~t~~~~~~~~~~----------------~ 66 (121)
....+|+++|..++|||||+.+++...+.+..... + +...|+......+.+ +
T Consensus 17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 17 HNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred cCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 34567999999999999999999864322111000 0 011122222222333 2
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCcc
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACPS 105 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 105 (121)
+..+.++|+||+..+.......++.+|++++|+|+.+.-
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv 135 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGV 135 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCC
Confidence 467899999999999888888889999999999988753
No 279
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.86 E-value=6.2e-08 Score=62.23 Aligned_cols=47 Identities=28% Similarity=0.284 Sum_probs=34.4
Q ss_pred EEEEEECCCCc----chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHH
Q 033349 69 KLVFWDLGGQP----GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALG 115 (121)
Q Consensus 69 ~~~i~d~~g~~----~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~ 115 (121)
.+.++|+||-. .....+..++..+|++++|.+.++..+-.+...+..
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~ 152 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQ 152 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHH
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHH
Confidence 48999999943 233677888899999999999988655444444433
No 280
>PTZ00416 elongation factor 2; Provisional
Probab=98.84 E-value=5.1e-08 Score=76.87 Aligned_cols=89 Identities=15% Similarity=0.053 Sum_probs=60.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC----CCCC--C------cccCCCceEEEEEEEC----------CeEEEEE
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE----GLPP--D------RIVPTVGLNIGRIEVS----------NSKLVFW 73 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~----~~~~--~------~~~~t~~~~~~~~~~~----------~~~~~i~ 73 (121)
...+|+++|..++|||||+.+++...+... +... + +...|+......+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 455899999999999999999986322211 0000 0 0111222111223333 4568999
Q ss_pred ECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 74 DLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 74 d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
||||+.++.......++.+|++++|+|..+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g 128 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEG 128 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCC
Confidence 9999998888778888999999999998774
No 281
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.83 E-value=2.4e-08 Score=70.56 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=64.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-----------------eEEEEEECCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-----------------SKLVFWDLGG 77 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~d~~g 77 (121)
..++++.+||.+++|||||.+.+++. .. ...+....|+.++...+.+.+ ..++++|++|
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~--~a--~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKS--KA--GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcC--CC--CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 35789999999999999999999882 22 123344567887766655542 3599999988
Q ss_pred -------CcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 78 -------QPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 78 -------~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.+.+...+...++++|+++-|+++.+.
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d 127 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFED 127 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEecCc
Confidence 335566778888999999999987654
No 282
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.83 E-value=1.2e-07 Score=64.24 Aligned_cols=81 Identities=23% Similarity=0.307 Sum_probs=53.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
.....|+++|.+|+|||||++.+...... .......|. .......+..+.++|+||.- ... ....+.+|.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~------~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDv 106 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTK------QNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADL 106 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhccc------Ccccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCE
Confidence 35678999999999999999998862111 111122221 11223356789999999863 333 334588999
Q ss_pred EEEEEeCCCcc
Q 033349 95 VVFVIDAACPS 105 (121)
Q Consensus 95 ii~v~d~~~~~ 105 (121)
+++++|.+...
T Consensus 107 VllviDa~~~~ 117 (225)
T cd01882 107 VLLLIDASFGF 117 (225)
T ss_pred EEEEEecCcCC
Confidence 99999987643
No 283
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.82 E-value=5.2e-08 Score=72.23 Aligned_cols=93 Identities=27% Similarity=0.412 Sum_probs=69.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC------eEEEEEECCCCcchHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
..-.|+|+|..++|||||+.+|.+ . +...++.+..+..+.+.+ ..+.+|-+.|...+..+++..+
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~------~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~l 94 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQG------I---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFAL 94 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhc------c---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccC
Confidence 567899999999999999999864 1 234466777766655543 4689999998777777776665
Q ss_pred hc----cCEEEEEEeCCCccc-HHHHHHHHHhh
Q 033349 90 EE----AHAVVFVIDAACPSR-FEDSKTALGKK 117 (121)
Q Consensus 90 ~~----~~~ii~v~d~~~~~s-~~~~~~~l~~i 117 (121)
.. --.+|+|.|.+.|.. ++.+.+|+.-+
T Consensus 95 t~~~l~~t~vvIvlDlS~PW~~~esL~~W~~vl 127 (472)
T PF05783_consen 95 TPENLPNTLVVIVLDLSKPWNIMESLEKWLSVL 127 (472)
T ss_pred CcccccceEEEEEecCCChHHHHHHHHHHHHHH
Confidence 43 246788999999977 56777887654
No 284
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.79 E-value=8.4e-09 Score=69.50 Aligned_cols=101 Identities=18% Similarity=0.333 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcchHH-----HHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRS-----IWEKYYE 90 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~-----~~~~~~~ 90 (121)
.-|++++|.+|+|||++=..+..+.. ..-.....+|+.++..++.+-| ..+.+||.+|++.+-. .-...++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~---a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~ 80 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI---ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFR 80 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh---hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhe
Confidence 45899999999999999666543110 0011244567788777776665 7899999999984422 3345578
Q ss_pred ccCEEEEEEeCCCcc---cHHHHHHHHHhhccC
Q 033349 91 EAHAVVFVIDAACPS---RFEDSKTALGKKGSS 120 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~---s~~~~~~~l~~i~~~ 120 (121)
+.+++++|||+..++ .++..+..|+.++.+
T Consensus 81 nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~ 113 (295)
T KOG3886|consen 81 NVQVLIYVFDVESREMEKDFHYYQKCLEALLQN 113 (295)
T ss_pred eheeeeeeeeccchhhhhhHHHHHHHHHHHHhc
Confidence 999999999997753 355555555555543
No 285
>COG2262 HflX GTPases [General function prediction only]
Probab=98.76 E-value=9.2e-08 Score=68.99 Aligned_cols=90 Identities=28% Similarity=0.392 Sum_probs=66.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCC---------cchHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ---------PGLRSIW 85 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~---------~~~~~~~ 85 (121)
....|.++|-.++|||||++++++. .....+....|..+....+.+.+ ..+.+-||-|- +.+++.+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~----~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTL 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGA----DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTL 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhcc----CeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHH
Confidence 3467999999999999999999861 12334567788888888888874 78899999981 1233333
Q ss_pred HHHhhccCEEEEEEeCCCcccHHHH
Q 033349 86 EKYYEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 86 ~~~~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
... ..+|.++.|+|.+||...+.+
T Consensus 267 EE~-~~aDlllhVVDaSdp~~~~~~ 290 (411)
T COG2262 267 EEV-KEADLLLHVVDASDPEILEKL 290 (411)
T ss_pred HHh-hcCCEEEEEeecCChhHHHHH
Confidence 322 589999999999999554444
No 286
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.75 E-value=2.7e-08 Score=68.00 Aligned_cols=93 Identities=24% Similarity=0.280 Sum_probs=63.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCccc-CCCceEEEEEEECCeEEEEEECCCC------c--chHHHHHH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIV-PTVGLNIGRIEVSNSKLVFWDLGGQ------P--GLRSIWEK 87 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~~~~i~d~~g~------~--~~~~~~~~ 87 (121)
.-+++++|.|++|||||+..++..+++.. .|+ .|...-...+.+++..+++.|+||- . +-++.+..
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA-----~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav 136 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAA-----SYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV 136 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhh-----ceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE
Confidence 37899999999999999999988655543 333 2333334567788899999999982 1 22333222
Q ss_pred HhhccCEEEEEEeCCCcccHH-HHHHHHH
Q 033349 88 YYEEAHAVVFVIDAACPSRFE-DSKTALG 115 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s~~-~~~~~l~ 115 (121)
.+.+|.+++|.|.+..+.-. -+.+.++
T Consensus 137 -ArtaDlilMvLDatk~e~qr~~le~ELe 164 (364)
T KOG1486|consen 137 -ARTADLILMVLDATKSEDQREILEKELE 164 (364)
T ss_pred -eecccEEEEEecCCcchhHHHHHHHHHH
Confidence 36899999999998765433 2334444
No 287
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=4.9e-08 Score=70.46 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=60.4
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC----------------C---------C--CcccCCCceEEEEEEEC
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL----------------P---------P--DRIVPTVGLNIGRIEVS 66 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~----------------~---------~--~~~~~t~~~~~~~~~~~ 66 (121)
.++.++++++|+..+|||||+-+++...+..... | . .+..-|+......++-+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 4678999999999999999999986532222110 0 0 01112233333344444
Q ss_pred CeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 67 NSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 67 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
-..+.++|+||+..+-.---.-...+|++|+|+|+.+.
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~ 121 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDG 121 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCC
Confidence 46799999999876654333334789999999999876
No 288
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.73 E-value=5.8e-08 Score=61.09 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=34.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc--eEEEEEEECCeEEEEEECCCC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG--LNIGRIEVSNSKLVFWDLGGQ 78 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~i~d~~g~ 78 (121)
-+++++|.+|+|||||++++.. .... ....+.| .....+.+++ .+.+|||||-
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~------~~~~-~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVG------KKKV-SVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhC------CCce-eeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 3899999999999999999987 2111 1112222 1223344443 5899999994
No 289
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.69 E-value=1.7e-07 Score=59.88 Aligned_cols=54 Identities=20% Similarity=0.345 Sum_probs=34.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECCeEEEEEECCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLVFWDLGG 77 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~d~~g 77 (121)
..++++++|.+|+|||||++++.... .....++-|.... .+.. +..+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~-------~~~~~~~~g~T~~~~~~~~-~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKK-------VCKVAPIPGETKVWQYITL-MKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCC-------ceeeCCCCCeeEeEEEEEc-CCCEEEEECcC
Confidence 46789999999999999999998611 1122222222221 2222 23478999998
No 290
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.65 E-value=3.1e-07 Score=64.94 Aligned_cols=95 Identities=20% Similarity=0.278 Sum_probs=68.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC------eEEEEEECCCCcchHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN------SKLVFWDLGGQPGLRSIWEKYY 89 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~i~d~~g~~~~~~~~~~~~ 89 (121)
+.-.++|+|+.++|||||+.++-+ .+ .+.+--|..+..+.+.+ .++.+|-+.|.-.+..++...+
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg------~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al 121 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQG------SE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL 121 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhc------cc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence 457899999999999999999866 11 23333344444444433 5689999999887777777776
Q ss_pred hcc----CEEEEEEeCCCccc-HHHHHHHHHhhcc
Q 033349 90 EEA----HAVVFVIDAACPSR-FEDSKTALGKKGS 119 (121)
Q Consensus 90 ~~~----~~ii~v~d~~~~~s-~~~~~~~l~~i~~ 119 (121)
... -.+|++.|+++|.. ++.+++|..-+.+
T Consensus 122 ~ats~aetlviltasms~Pw~~lesLqkWa~Vl~e 156 (473)
T KOG3905|consen 122 PATSLAETLVILTASMSNPWTLLESLQKWASVLRE 156 (473)
T ss_pred cccCccceEEEEEEecCCcHHHHHHHHHHHHHHHH
Confidence 542 35677899999955 7888899876544
No 291
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.64 E-value=3.5e-07 Score=58.32 Aligned_cols=55 Identities=25% Similarity=0.402 Sum_probs=38.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE-EEEECCeEEEEEECCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG-RIEVSNSKLVFWDLGG 77 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~i~d~~g 77 (121)
...+++++|.+++||||+++++.. .. ...+.++.|.... .....+..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~------~~-~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKG------RH-SASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC------CC-ccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 467899999999999999999985 21 2244455554432 1111234689999998
No 292
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=5.1e-07 Score=69.80 Aligned_cols=96 Identities=18% Similarity=0.077 Sum_probs=70.2
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCC--CCCC------------cccCCCceEEEEEEECC-eEEEEEECCCCc
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG--LPPD------------RIVPTVGLNIGRIEVSN-SKLVFWDLGGQP 79 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~--~~~~------------~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~ 79 (121)
...-+|.++|+..+|||||..+++-..+.+.. ...+ +..-|+......+.+++ ..++++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 34567999999999999999999775443321 1110 11123333344677775 899999999999
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCcccHHHH
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
.+.......++-+|++++|+|..+....+..
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTE 118 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTE 118 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHH
Confidence 9999999999999999999998875444433
No 293
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.61 E-value=7.2e-08 Score=71.87 Aligned_cols=98 Identities=23% Similarity=0.375 Sum_probs=72.2
Q ss_pred HhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC--eEEEEEECCCCcchHHHHH
Q 033349 9 WKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN--SKLVFWDLGGQPGLRSIWE 86 (121)
Q Consensus 9 ~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~d~~g~~~~~~~~~ 86 (121)
|..+++.+++|+.|+|..++|||+|+++++. +.+.....|.-|.....+...+ .-+.+.|.+|... .
T Consensus 22 wtlsrsipelk~givg~~~sgktalvhr~lt------gty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----a 90 (749)
T KOG0705|consen 22 WTLSRSIPELKLGIVGTSQSGKTALVHRYLT------GTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----A 90 (749)
T ss_pred eeeecccchhheeeeecccCCceeeeeeecc------ceeccccCCcCccceeeEEeeccceEeeeecccCCch-----h
Confidence 3345667899999999999999999999988 7777665555444444444444 4466777766321 3
Q ss_pred HHhhccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 87 KYYEEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 87 ~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
.+..++|++||||.+.|..+|+.+..+..++
T Consensus 91 Qft~wvdavIfvf~~~d~~s~q~v~~l~~~l 121 (749)
T KOG0705|consen 91 QFCQWVDAVVFVFSVEDEQSFQAVQALAHEM 121 (749)
T ss_pred hhhhhccceEEEEEeccccCHHHHHHHHhhc
Confidence 5568899999999999999999887665544
No 294
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.61 E-value=2.3e-07 Score=60.43 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=35.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGG 77 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g 77 (121)
..++++++|.+++|||||++++.+.... ...+.-|... ..+.+ +..+.++|+||
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~-------~~~~~pg~T~~~~~~~~-~~~~~l~DtPG 171 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRAC-------NVGATPGVTKSMQEVHL-DKKVKLLDSPG 171 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccc-------eecCCCCeEcceEEEEe-CCCEEEEECcC
Confidence 3589999999999999999999872111 1122222221 22223 34689999998
No 295
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.58 E-value=1.3e-06 Score=59.23 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=54.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEEC---CeEEEEEECCCCcch------HHHHH
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGL------RSIWE 86 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~------~~~~~ 86 (121)
...-|.|+|++++|||+|++++.+..... .........|.|+-.....+. +..+.++||+|-... .....
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f-~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGF-DVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCe-EecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 44568899999999999999998831011 111223456677665444442 478999999994321 22222
Q ss_pred HHhhc--cCEEEEEEeCCCc
Q 033349 87 KYYEE--AHAVVFVIDAACP 104 (121)
Q Consensus 87 ~~~~~--~~~ii~v~d~~~~ 104 (121)
..+.. ++.+++..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 33333 8888887766543
No 296
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.57 E-value=3e-07 Score=59.62 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=36.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECCeEEEEEECCCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSNSKLVFWDLGGQ 78 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~d~~g~ 78 (121)
..++++++|.+++|||||++++.. ..+. ...+..+.. ...+.++ ..+.++||||-
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~------~~~~-~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRG------KKVA-KVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC------CCce-eecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 457999999999999999999987 2221 112222221 2223333 45899999983
No 297
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.57 E-value=3.9e-07 Score=68.26 Aligned_cols=94 Identities=20% Similarity=0.330 Sum_probs=62.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceE--EEEEEECC--eEEEEEECCCCcchHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLN--IGRIEVSN--SKLVFWDLGGQPGLRSIWEKYYE 90 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~i~d~~g~~~~~~~~~~~~~ 90 (121)
++.+++.++|+.++|||.+++.|++ +.+.+.+..+.... +..+...+ ..+.+-|.+-. ......... .
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~sflg------r~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~ 494 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQSFLG------RSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-A 494 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHHHHhc------cccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-c
Confidence 3579999999999999999999998 44433333333322 23333444 34666666543 221111222 6
Q ss_pred ccCEEEEEEeCCCcccHHHHHHHHHh
Q 033349 91 EAHAVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 91 ~~~~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
.||+++++||.++|.+|+.....+..
T Consensus 495 ~cDv~~~~YDsS~p~sf~~~a~v~~~ 520 (625)
T KOG1707|consen 495 ACDVACLVYDSSNPRSFEYLAEVYNK 520 (625)
T ss_pred eeeeEEEecccCCchHHHHHHHHHHH
Confidence 89999999999999999988766554
No 298
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.55 E-value=5e-07 Score=59.45 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...+++++|.+|+|||||++.+..
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~ 149 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLK 149 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999987
No 299
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.53 E-value=2.9e-07 Score=64.34 Aligned_cols=61 Identities=23% Similarity=0.303 Sum_probs=34.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-C---CCcccCCCceEEEE--EEECC--eEEEEEECCC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-P---PDRIVPTVGLNIGR--IEVSN--SKLVFWDLGG 77 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~-~---~~~~~~t~~~~~~~--~~~~~--~~~~i~d~~g 77 (121)
.++|+|+|.+|+|||||++.|++........ . ......+....... +.-++ ..+.++||||
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpG 72 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPG 72 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCC
Confidence 5899999999999999999998731111100 0 00112233333322 33333 5799999999
No 300
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.47 E-value=9e-07 Score=62.02 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=36.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE--EEEEECCeEEEEEECCCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI--GRIEVSNSKLVFWDLGGQ 78 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~d~~g~ 78 (121)
..++++++|.+++|||||++++.+. ... ...+.-|... ..+.+ +..+.++||||-
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~------~~~-~~~~~~g~T~~~~~~~~-~~~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGK------KIA-KTGNRPGVTKAQQWIKL-GKGLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC------Ccc-ccCCCCCeEEEEEEEEe-CCcEEEEECCCc
Confidence 5689999999999999999999872 110 1122223222 22333 345889999993
No 301
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.43 E-value=9.9e-07 Score=61.48 Aligned_cols=57 Identities=28% Similarity=0.346 Sum_probs=36.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~ 78 (121)
..++++++|.+|+|||||++++.+.... ........|... ..+.+. ..+.++||||-
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~---~~~~~~g~T~~~--~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVA---KVGNRPGVTKGQ--QWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcc---ccCCCCCeecce--EEEEeC-CCEEEEECCCc
Confidence 4689999999999999999999862111 111111122222 233332 35899999995
No 302
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.42 E-value=1.5e-06 Score=59.58 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=38.2
Q ss_pred HHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC----cccCCCceEEEEEEECCeEEEEEECCC
Q 033349 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD----RIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (121)
Q Consensus 5 ~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~i~d~~g 77 (121)
+..+++.+.. ...+++|.+|+|||||++++........+..+. -...|.......+ .+ ..++||||
T Consensus 111 i~eLf~~l~~---~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~--~~liDtPG 180 (245)
T TIGR00157 111 LKELIEALQN---RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG--GLIADTPG 180 (245)
T ss_pred HHHHHhhhcC---CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC--cEEEeCCC
Confidence 3445555543 368999999999999999998732111111111 1113334333333 33 37999999
No 303
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.39 E-value=2.9e-06 Score=63.04 Aligned_cols=93 Identities=17% Similarity=0.148 Sum_probs=58.7
Q ss_pred hccCceeEEEEEcCCCCCHHHHHHHHHhhccC-CCCCCCCcccCCCceEEE-------------------------EEE-
Q 033349 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSN-VEGLPPDRIVPTVGLNIG-------------------------RIE- 64 (121)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~-~~~~~~~~~~~t~~~~~~-------------------------~~~- 64 (121)
...+..+.|.++|.-..|||||+.++++.... ...+...-.....|+... .+.
T Consensus 29 ~~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (460)
T PTZ00327 29 ISRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPG 108 (460)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccc
Confidence 34567899999999999999999999862110 000000000001111100 000
Q ss_pred -----ECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 65 -----VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 65 -----~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.....+.++|+||++.+.......+..+|++++|+|+.+.
T Consensus 109 ~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g 153 (460)
T PTZ00327 109 CGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANES 153 (460)
T ss_pred ccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 0013689999999998876666666899999999999863
No 304
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.36 E-value=2.1e-06 Score=54.81 Aligned_cols=57 Identities=18% Similarity=0.254 Sum_probs=36.3
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG 77 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g 77 (121)
....+++++|.+++|||||++.+....... .......|..... +.. +..+.++||||
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~---~~~~~~~t~~~~~--~~~-~~~~~liDtPG 154 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLK---VGNVPGTTTSQQE--VKL-DNKIKLLDTPG 154 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHcccccc---ccCCCCcccceEE--EEe-cCCEEEEECCC
Confidence 356889999999999999999998722111 1111122333222 222 24589999998
No 305
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.9e-06 Score=63.12 Aligned_cols=89 Identities=24% Similarity=0.332 Sum_probs=61.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCC-CCCCCcccCCCceEEEEEEEC---CeEEEEEECCCCcchHHHHHHHhhccCE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVE-GLPPDRIVPTVGLNIGRIEVS---NSKLVFWDLGGQPGLRSIWEKYYEEAHA 94 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~---~~~~~i~d~~g~~~~~~~~~~~~~~~~~ 94 (121)
=++++|.---|||||+-.+.. +... ++.- - -|...--..+..+ ...+.|+|||||+.+..+...-.+-+|.
T Consensus 7 vVtimGHVDHGKTtLLD~IR~--t~Va~~EaG-G--ITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI 81 (509)
T COG0532 7 VVTIMGHVDHGKTTLLDKIRK--TNVAAGEAG-G--ITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI 81 (509)
T ss_pred EEEEeCcccCCccchhhhHhc--CccccccCC-c--eeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence 378999999999999999976 2210 1000 0 1111111233332 3579999999999999888888888999
Q ss_pred EEEEEeCCC---cccHHHHHH
Q 033349 95 VVFVIDAAC---PSRFEDSKT 112 (121)
Q Consensus 95 ii~v~d~~~---~~s~~~~~~ 112 (121)
+++|+++.| |++.+.+.+
T Consensus 82 aILVVa~dDGv~pQTiEAI~h 102 (509)
T COG0532 82 AILVVAADDGVMPQTIEAINH 102 (509)
T ss_pred EEEEEEccCCcchhHHHHHHH
Confidence 999999987 566665543
No 306
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.35 E-value=3.4e-06 Score=59.71 Aligned_cols=84 Identities=23% Similarity=0.372 Sum_probs=59.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCC---------cchHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQ---------PGLRSIWEK 87 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~---------~~~~~~~~~ 87 (121)
--|.++|-.++|||||+++++... -...+....|..+..+...... ..+-+-||-|- ..+...+..
T Consensus 179 pviavVGYTNaGKsTLikaLT~Aa----l~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 179 PVIAVVGYTNAGKSTLIKALTKAA----LYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred ceEEEEeecCccHHHHHHHHHhhh----cCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 348899999999999999998621 2334556677777766666654 56778888881 122223222
Q ss_pred HhhccCEEEEEEeCCCccc
Q 033349 88 YYEEAHAVVFVIDAACPSR 106 (121)
Q Consensus 88 ~~~~~~~ii~v~d~~~~~s 106 (121)
...+|.++-|.|++.|+.
T Consensus 255 -VaeadlllHvvDiShP~a 272 (410)
T KOG0410|consen 255 -VAEADLLLHVVDISHPNA 272 (410)
T ss_pred -HhhcceEEEEeecCCccH
Confidence 358999999999999854
No 307
>PRK12288 GTPase RsgA; Reviewed
Probab=98.31 E-value=3.2e-06 Score=60.79 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=24.4
Q ss_pred HHHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 5 FYGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 5 ~~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+..+++.+..+ -++++|.+|+|||||++++..
T Consensus 196 ideL~~~L~~k---i~~~vG~sgVGKSTLiN~Ll~ 227 (347)
T PRK12288 196 LEELEAALTGR---ISIFVGQSGVGKSSLINALLP 227 (347)
T ss_pred HHHHHHHHhhC---CEEEECCCCCCHHHHHHHhcc
Confidence 34455555433 378999999999999999986
No 308
>PRK12289 GTPase RsgA; Reviewed
Probab=98.30 E-value=2.8e-06 Score=61.13 Aligned_cols=31 Identities=23% Similarity=0.371 Sum_probs=23.7
Q ss_pred HHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..+++.+..+ .++++|.+|+|||||++.+..
T Consensus 164 ~eL~~~L~~k---i~v~iG~SgVGKSSLIN~L~~ 194 (352)
T PRK12289 164 EALLEQLRNK---ITVVAGPSGVGKSSLINRLIP 194 (352)
T ss_pred HHHhhhhccc---eEEEEeCCCCCHHHHHHHHcC
Confidence 3445554432 379999999999999999986
No 309
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=3.2e-06 Score=60.23 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=36.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEE--EEEECCeEEEEEECCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIG--RIEVSNSKLVFWDLGG 77 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~d~~g 77 (121)
+...++.++|-+++|||||++++.+... ..+.+.-|.... .+... ..+.++||||
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-------~~~s~~PG~Tk~~q~i~~~-~~i~LlDtPG 186 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-------AKTSNRPGTTKGIQWIKLD-DGIYLLDTPG 186 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccc-------eeeCCCCceecceEEEEcC-CCeEEecCCC
Confidence 3568899999999999999999987322 122222243322 22222 3489999999
No 310
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.29 E-value=1e-06 Score=56.72 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++++|++|||||||++.+..
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~ 57 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLP 57 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5689999999999999999987
No 311
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.28 E-value=2.2e-06 Score=52.82 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCC----CcchHHHHHHHhhccC
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGG----QPGLRSIWEKYYEEAH 93 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g----~~~~~~~~~~~~~~~~ 93 (121)
.|+++||..|+|||||++.+.+ ... .+..|.. +++++ --.+|+|| +..+...+.....++|
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G------~~~--lykKTQA-----ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dad 66 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYG------NDT--LYKKTQA-----VEFND--KGDIDTPGEYFEHPRWYHALITTLQDAD 66 (148)
T ss_pred ceeEEecccccCchhHHHHhhc------chh--hhcccce-----eeccC--ccccCCchhhhhhhHHHHHHHHHhhccc
Confidence 4799999999999999999877 211 2223333 23322 12568888 3444444555567888
Q ss_pred EEEEEEeCCCcc
Q 033349 94 AVVFVIDAACPS 105 (121)
Q Consensus 94 ~ii~v~d~~~~~ 105 (121)
.+++|-..++++
T Consensus 67 vi~~v~~and~~ 78 (148)
T COG4917 67 VIIYVHAANDPE 78 (148)
T ss_pred eeeeeecccCcc
Confidence 888888777763
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.27 E-value=2e-05 Score=53.95 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-+++++|+.|+||||+++.+.+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g 48 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVG 48 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhC
Confidence 344799999999999999999987
No 313
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.26 E-value=1.6e-06 Score=59.24 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.5
Q ss_pred EEcCCCCCHHHHHHHHHhh
Q 033349 22 ILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 22 vvG~~~~GKTsl~~~~~~~ 40 (121)
|+|++||||||+++.+.+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~ 19 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEW 19 (238)
T ss_dssp -EESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHH
Confidence 6899999999999999763
No 314
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.26 E-value=1.7e-05 Score=58.24 Aligned_cols=70 Identities=17% Similarity=0.306 Sum_probs=44.6
Q ss_pred HHhhhccC--ceeEEEEEcCCCCCHHHHHHHHHhh---------------ccCCCCCCCCcccCCCceEE---EEEEE--
Q 033349 8 LWKYIFTK--TEFHVLILGIDKAGKTTLLEKLKSV---------------YSNVEGLPPDRIVPTVGLNI---GRIEV-- 65 (121)
Q Consensus 8 ~~~~~~~~--~~~~i~vvG~~~~GKTsl~~~~~~~---------------~~~~~~~~~~~~~~t~~~~~---~~~~~-- 65 (121)
+|.....+ -.+.|.++|+.++|||||+++|... .+++++....++..|..+.. ..+.+
T Consensus 6 iykDIa~RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~ 85 (492)
T TIGR02836 6 IYKDIAERTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI 85 (492)
T ss_pred HHHHHHHHhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec
Confidence 44444433 4689999999999999999999874 11233333444444444443 22333
Q ss_pred C-C--eEEEEEECCC
Q 033349 66 S-N--SKLVFWDLGG 77 (121)
Q Consensus 66 ~-~--~~~~i~d~~g 77 (121)
. + .++.++|++|
T Consensus 86 ~~~~~~~VrlIDcvG 100 (492)
T TIGR02836 86 NEGTKFKVRLVDCVG 100 (492)
T ss_pred cCCCcccEEEEECCC
Confidence 2 2 5799999998
No 315
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.25 E-value=3.4e-06 Score=62.18 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=63.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC------------cccCCCceE----EEEEEECCeEEEEEECCCCcch
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD------------RIVPTVGLN----IGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~------------~~~~t~~~~----~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
-+|++|-.-.=|||||+.++++.. +.|.. ..+..-|.. -..+.+++..+.++|||||-.+
T Consensus 6 RNIAIIAHVDHGKTTLVD~LLkQS----Gtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 6 RNIAIIAHVDHGKTTLVDALLKQS----GTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred ceeEEEEEecCCcchHHHHHHhhc----cccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 458899988999999999998732 22221 112222322 2457788899999999999999
Q ss_pred HHHHHHHhhccCEEEEEEeCCC
Q 033349 82 RSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
.......+.-+|++++++|..+
T Consensus 82 GGEVERvl~MVDgvlLlVDA~E 103 (603)
T COG1217 82 GGEVERVLSMVDGVLLLVDASE 103 (603)
T ss_pred cchhhhhhhhcceEEEEEEccc
Confidence 9988999999999999999876
No 316
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.22 E-value=1.6e-05 Score=60.98 Aligned_cols=96 Identities=20% Similarity=0.137 Sum_probs=64.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCC---CCCCCcccCC------CceEE----EEEEECC-----eEEEEEECCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVE---GLPPDRIVPT------VGLNI----GRIEVSN-----SKLVFWDLGG 77 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~---~~~~~~~~~t------~~~~~----~~~~~~~-----~~~~i~d~~g 77 (121)
....+.++|+-+.|||+|+..+....+.-. ....-.|.-+ -|..+ ..+-..+ .-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 567799999999999999999876322110 0000011111 11111 1122222 4589999999
Q ss_pred CcchHHHHHHHhhccCEEEEEEeCCCcccHHHHH
Q 033349 78 QPGLRSIWEKYYEEAHAVVFVIDAACPSRFEDSK 111 (121)
Q Consensus 78 ~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~ 111 (121)
|..+.......++.+|++++|+|+.+...++...
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr 240 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER 240 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHH
Confidence 9999888888889999999999999887766543
No 317
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.22 E-value=6.6e-06 Score=58.89 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=42.6
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCC---CCC-CcccCCCceEEEEEEEC--C--eEEEEEECCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEG---LPP-DRIVPTVGLNIGRIEVS--N--SKLVFWDLGG 77 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~---~~~-~~~~~t~~~~~~~~~~~--~--~~~~i~d~~g 77 (121)
.-.+.|+++|++|+|||||++.++...-.... ... ....+++........+. + ..+.++||||
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpG 91 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPG 91 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCC
Confidence 35789999999999999999999884211111 011 11446666665554443 3 6799999999
No 318
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=6.8e-06 Score=58.99 Aligned_cols=60 Identities=25% Similarity=0.463 Sum_probs=39.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCC-----CCCcccCCCceEEEEEEEC--C--eEEEEEECCC
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGL-----PPDRIVPTVGLNIGRIEVS--N--SKLVFWDLGG 77 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~-----~~~~~~~t~~~~~~~~~~~--~--~~~~i~d~~g 77 (121)
-.+.++++|++|.|||||++.+... +..+. .......|+.+......+. + .+++++||||
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~--~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPG 88 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLT--DLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPG 88 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhh--hccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCC
Confidence 4599999999999999999998762 11111 1112223555554444443 3 5789999999
No 319
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.20 E-value=1.1e-05 Score=51.83 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=22.7
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+..+||.+.|+|||||||++.++..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4578999999999999999999876
No 320
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.16 E-value=1.5e-05 Score=54.51 Aligned_cols=61 Identities=25% Similarity=0.315 Sum_probs=38.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCC-CCC-CCC-cccCCCceEE--EEEEECC--eEEEEEECCC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNV-EGL-PPD-RIVPTVGLNI--GRIEVSN--SKLVFWDLGG 77 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~-~~~-~~~-~~~~t~~~~~--~~~~~~~--~~~~i~d~~g 77 (121)
.++|+|+|.+|.|||||++.+...+-.. .+. ... .+..|..... +.+.-++ .++.++||||
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPG 113 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPG 113 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCC
Confidence 5899999999999999999987632111 111 111 2233444432 2344445 4689999999
No 321
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.15 E-value=7.2e-06 Score=55.98 Aligned_cols=21 Identities=43% Similarity=0.586 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+.+
T Consensus 31 fvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 378999999999999999987
No 322
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=6e-06 Score=60.46 Aligned_cols=88 Identities=24% Similarity=0.215 Sum_probs=60.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccC------CCCCCCCc------------ccCCCceEEEEEEECCeEEEEEECCCC
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSN------VEGLPPDR------------IVPTVGLNIGRIEVSNSKLVFWDLGGQ 78 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~------~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~i~d~~g~ 78 (121)
.-.++||-.|.+|||||..+++-.-+- ..+..... ..-++-.....+.+++..+++.|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 345789999999999999998642111 00111111 111111223467778899999999999
Q ss_pred cchHHHHHHHhhccCEEEEEEeCCCc
Q 033349 79 PGLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 79 ~~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
+.+....=..|..+|.+++|.|....
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKG 117 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKG 117 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccC
Confidence 99988777777899999999998764
No 323
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.2e-05 Score=60.23 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=63.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCC-----CCCC------cccCCCceEEEEEEECC---eEEEEEECCCCcchH
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPPD------RIVPTVGLNIGRIEVSN---SKLVFWDLGGQPGLR 82 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~-----~~~~------~~~~t~~~~~~~~~~~~---~~~~i~d~~g~~~~~ 82 (121)
.-++.||-.-.=|||||.-+++...+.+.. ++-+ +..-|+-.....+.+++ +-++++|||||..+.
T Consensus 60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs 139 (650)
T KOG0462|consen 60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS 139 (650)
T ss_pred ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence 345888888899999999999875432111 1111 12223333344555555 789999999999999
Q ss_pred HHHHHHhhccCEEEEEEeCCCc
Q 033349 83 SIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 83 ~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
......+.-|+|+++|+|.++.
T Consensus 140 ~EVsRslaac~G~lLvVDA~qG 161 (650)
T KOG0462|consen 140 GEVSRSLAACDGALLVVDASQG 161 (650)
T ss_pred ceehehhhhcCceEEEEEcCcC
Confidence 8888888999999999999874
No 324
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.13 E-value=3.5e-06 Score=58.06 Aligned_cols=87 Identities=24% Similarity=0.306 Sum_probs=59.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE-EEEEECCeEEEEEECCCC--------cchHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI-GRIEVSNSKLVFWDLGGQ--------PGLRSIWEKY 88 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~i~d~~g~--------~~~~~~~~~~ 88 (121)
-++.++|.|++||||++..+.+..++.. .++-|.-..+ ....+++-.+++.|+||- .+-++++..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~va-----syefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviav- 133 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVA-----AYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAV- 133 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccc-----cccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEE-
Confidence 4899999999999999999987433322 2222222222 344567778999999982 122333333
Q ss_pred hhccCEEEEEEeCCCcccHHHH
Q 033349 89 YEEAHAVVFVIDAACPSRFEDS 110 (121)
Q Consensus 89 ~~~~~~ii~v~d~~~~~s~~~~ 110 (121)
.+.|+.+++|.|+..|-+-..+
T Consensus 134 artcnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 134 ARTCNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred eecccEEEEEeeccCcccHHHH
Confidence 3789999999999998765554
No 325
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.11 E-value=4e-05 Score=50.19 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-.++++|++|+|||||++.+.+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G 47 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAG 47 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHc
Confidence 445789999999999999999987
No 326
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.10 E-value=1.1e-05 Score=58.33 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..++.++|.+|+|||||++++..
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~ 176 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLK 176 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999987
No 327
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.08 E-value=1.7e-05 Score=55.63 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..++++|++|+|||||++.+..
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~ 183 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLP 183 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999987
No 328
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.4e-05 Score=58.78 Aligned_cols=90 Identities=28% Similarity=0.368 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCC-CCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNV-EGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 97 (121)
=+-++|.-.=|||||+-.|.+ +.. .++.-.-+ .-+|.-...+. .|..++|.|||||..+..+...--+-+|.+++
T Consensus 155 VVTiMGHVDHGKTTLLD~lRk--s~VAA~E~GGIT-QhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVL 230 (683)
T KOG1145|consen 155 VVTIMGHVDHGKTTLLDALRK--SSVAAGEAGGIT-QHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIVVL 230 (683)
T ss_pred eEEEeecccCChhhHHHHHhh--CceehhhcCCcc-ceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEEEE
Confidence 367899999999999999987 221 11111110 11221112222 56889999999999999998888888999999
Q ss_pred EEeCCC---cccHHHHHH
Q 033349 98 VIDAAC---PSRFEDSKT 112 (121)
Q Consensus 98 v~d~~~---~~s~~~~~~ 112 (121)
|+...| |++.+.+++
T Consensus 231 VVAadDGVmpQT~EaIkh 248 (683)
T KOG1145|consen 231 VVAADDGVMPQTLEAIKH 248 (683)
T ss_pred EEEccCCccHhHHHHHHH
Confidence 998877 455555543
No 329
>PRK13768 GTPase; Provisional
Probab=98.06 E-value=3.9e-05 Score=52.91 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+-+++.|++|+||||++..+..
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 4688999999999999888765
No 330
>PRK00098 GTPase RsgA; Reviewed
Probab=98.03 E-value=2.6e-05 Score=54.98 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...++++|.+|+|||||++.+..
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~ 186 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAP 186 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999986
No 331
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=6.4e-06 Score=56.29 Aligned_cols=84 Identities=25% Similarity=0.362 Sum_probs=54.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchH---HHHHHHhhccCE
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLR---SIWEKYYEEAHA 94 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~---~~~~~~~~~~~~ 94 (121)
-+|+++|...+||||+.+.....++.+..- -.++|.......+.-.-+++++||.|||-.+- -.....++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTl---flESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETL---FLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCcee---EeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 459999999999999998877644332111 12233222222221112679999999986432 134556788999
Q ss_pred EEEEEeCCCc
Q 033349 95 VVFVIDAACP 104 (121)
Q Consensus 95 ii~v~d~~~~ 104 (121)
+++|.|..+.
T Consensus 105 LifvIDaQdd 114 (347)
T KOG3887|consen 105 LIFVIDAQDD 114 (347)
T ss_pred EEEEEechHH
Confidence 9999998764
No 332
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.01 E-value=4.3e-05 Score=54.80 Aligned_cols=89 Identities=21% Similarity=0.184 Sum_probs=54.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccC-----CCCCCCCcccCCCceEEEEEEEC---------CeEEEEEECCCCc
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSN-----VEGLPPDRIVPTVGLNIGRIEVS---------NSKLVFWDLGGQP 79 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~-----~~~~~~~~~~~t~~~~~~~~~~~---------~~~~~i~d~~g~~ 79 (121)
++.++++.++|.-.+|||||.+++....+. .+.+. +..-|...-.+.+.+. ..++.++|.||+.
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~--eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHa 81 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQST--ERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHA 81 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCccc--ccceeEeecceeeecccccccCccccceeEEEeCCCcH
Confidence 345799999999999999999999763222 11111 1111222111222221 1467999999997
Q ss_pred chHHHHHHHhhccCEEEEEEeCCCc
Q 033349 80 GLRSIWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 80 ~~~~~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.+-..+----+-.|..++|+|+...
T Consensus 82 sLIRtiiggaqiiDlm~lviDv~kG 106 (522)
T KOG0461|consen 82 SLIRTIIGGAQIIDLMILVIDVQKG 106 (522)
T ss_pred HHHHHHHhhhheeeeeeEEEehhcc
Confidence 5443333333567888999998753
No 333
>PRK13796 GTPase YqeH; Provisional
Probab=97.99 E-value=3.3e-05 Score=55.95 Aligned_cols=23 Identities=26% Similarity=0.585 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..++.++|.+|+|||||++++..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~ 182 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIK 182 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHh
Confidence 45799999999999999999986
No 334
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=56.05 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.+++|.+|+|||||++++..
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p 186 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLP 186 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCc
Confidence 568999999999999999965
No 335
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.00022 Score=51.68 Aligned_cols=95 Identities=19% Similarity=0.238 Sum_probs=59.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCC---cccCCCc-eEEE--------------EEE----EC--------
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPD---RIVPTVG-LNIG--------------RIE----VS-------- 66 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~---~~~~t~~-~~~~--------------~~~----~~-------- 66 (121)
.=.|+++|.=+.||||+++.++. +.++. -.+||.. +... .+. +.
T Consensus 58 KPmill~GqyStGKTtfi~yLle------~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~a 131 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLE------QDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNA 131 (532)
T ss_pred CceEEEEeccccchhHHHHHHHh------CCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHH
Confidence 34689999999999999999988 33321 1122222 1110 010 00
Q ss_pred -----------C---eEEEEEECCCCc-----------chHHHHHHHhhccCEEEEEEeCCCcccHHHHHHHHHhh
Q 033349 67 -----------N---SKLVFWDLGGQP-----------GLRSIWEKYYEEAHAVVFVIDAACPSRFEDSKTALGKK 117 (121)
Q Consensus 67 -----------~---~~~~i~d~~g~~-----------~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l~~i 117 (121)
+ .++.++|+||.- .+...++++...||.|+++||...-+-=.+.+..+..+
T Consensus 132 flnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aL 207 (532)
T KOG1954|consen 132 FLNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDAL 207 (532)
T ss_pred HHHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHh
Confidence 0 248999999921 34568899999999999999976543333333334333
No 336
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.93 E-value=2.3e-05 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|||||||++++..
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34579999999999999999976
No 337
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.93 E-value=6e-05 Score=60.87 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=35.3
Q ss_pred EEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC---cccHHHHH
Q 033349 70 LVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC---PSRFEDSK 111 (121)
Q Consensus 70 ~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~---~~s~~~~~ 111 (121)
+.+|||||++.+.......+..+|++++|+|+++ +++++.+.
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~ 572 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN 572 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH
Confidence 8999999999998877777788999999999986 55565554
No 338
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=4.9e-05 Score=57.28 Aligned_cols=92 Identities=21% Similarity=0.233 Sum_probs=56.5
Q ss_pred hccCceeEEEEEcCCCCCHHHHHHHHHhhccCCC--------------CCCCCcc---------cCCCceE----EEEEE
Q 033349 12 IFTKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE--------------GLPPDRI---------VPTVGLN----IGRIE 64 (121)
Q Consensus 12 ~~~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~--------------~~~~~~~---------~~t~~~~----~~~~~ 64 (121)
..++..+.++++|.-.+|||||..+++.-.+++. +...-.| +..-|+. ...++
T Consensus 172 ~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fe 251 (603)
T KOG0458|consen 172 SDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFE 251 (603)
T ss_pred cCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEe
Confidence 3455789999999999999999998765211110 1111010 1111111 12233
Q ss_pred ECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC
Q 033349 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 65 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
-+...+.+.|.||+..+..---.-...+|++++|+|++-
T Consensus 252 s~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~ 290 (603)
T KOG0458|consen 252 SKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDAST 290 (603)
T ss_pred cCceeEEEecCCCccccchhhhccccccceEEEEEECCc
Confidence 233679999999987665433333468999999999764
No 339
>PRK08118 topology modulation protein; Reviewed
Probab=97.87 E-value=1.5e-05 Score=51.62 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.||+|+|++|||||||.+.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999873
No 340
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.86 E-value=1.6e-05 Score=48.33 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.|+|.|++||||||+++.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 341
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.84 E-value=1.7e-05 Score=51.96 Aligned_cols=22 Identities=50% Similarity=0.706 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+|+|+|+||+||||+++++..
T Consensus 1 ~riiilG~pGaGK~T~A~~La~ 22 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAK 22 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 342
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=0.00019 Score=50.53 Aligned_cols=89 Identities=20% Similarity=0.202 Sum_probs=59.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhccCCC----CCC------CC--cccCCCceEEEEEEECCeEEEEEECCCCcch
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVYSNVE----GLP------PD--RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGL 81 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~----~~~------~~--~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~ 81 (121)
.++.++|..+|.-.=|||||..+++....... ..+ +. ..--|+......++-.+..+..+|.|||..|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY 88 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence 56789999999999999999999876422110 000 00 1112333333344445688999999999877
Q ss_pred HH-HHHHHhhccCEEEEEEeCCC
Q 033349 82 RS-IWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 82 ~~-~~~~~~~~~~~ii~v~d~~~ 103 (121)
-+ ++... ...|++|+|+..+|
T Consensus 89 vKNMItgA-aqmDgAILVVsA~d 110 (394)
T COG0050 89 VKNMITGA-AQMDGAILVVAATD 110 (394)
T ss_pred HHHHhhhH-HhcCccEEEEEcCC
Confidence 54 43333 57899999999887
No 343
>PRK07261 topology modulation protein; Provisional
Probab=97.80 E-value=2.3e-05 Score=50.97 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+|+|+|++|+|||||++.+..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~ 22 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQ 22 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3799999999999999999876
No 344
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.80 E-value=6.2e-05 Score=55.87 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=63.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCC-----CCC------CcccCCCceEEEEEEEC--C---eEEEEEECCCCcch
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEG-----LPP------DRIVPTVGLNIGRIEVS--N---SKLVFWDLGGQPGL 81 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~-----~~~------~~~~~t~~~~~~~~~~~--~---~~~~i~d~~g~~~~ 81 (121)
-+++++..-.=|||||.-+++...+.... +.. .+..-|+-.+.....+. + +.++++|||||..+
T Consensus 10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF 89 (603)
T COG0481 10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 89 (603)
T ss_pred cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence 44778888888999999999774322110 111 11222333332233332 2 67999999999988
Q ss_pred HHHHHHHhhccCEEEEEEeCCCcccHHHHHHHH
Q 033349 82 RSIWEKYYEEAHAVVFVIDAACPSRFEDSKTAL 114 (121)
Q Consensus 82 ~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~l 114 (121)
.-..-..+..|.|+++|+|.++.-.-+.+...+
T Consensus 90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~Y 122 (603)
T COG0481 90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVY 122 (603)
T ss_pred EEEehhhHhhCCCcEEEEECccchHHHHHHHHH
Confidence 776677778999999999999865545444433
No 345
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.00016 Score=54.99 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=43.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
+++=++|+||+|.|||||++.+..++..- ....-.|+ +..+.-+...+++...|. .+.+++.. .+.+|.+
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~tk~------ti~~i~GP-iTvvsgK~RRiTflEcp~--Dl~~miDv-aKIaDLV 137 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRFTKQ------TIDEIRGP-ITVVSGKTRRITFLECPS--DLHQMIDV-AKIADLV 137 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHHHHh------hhhccCCc-eEEeecceeEEEEEeChH--HHHHHHhH-HHhhhee
Confidence 46778899999999999999987743321 11111111 111222235577777662 22333222 2556777
Q ss_pred EEEEeCC
Q 033349 96 VFVIDAA 102 (121)
Q Consensus 96 i~v~d~~ 102 (121)
++.+|.+
T Consensus 138 lLlIdgn 144 (1077)
T COG5192 138 LLLIDGN 144 (1077)
T ss_pred EEEeccc
Confidence 6666654
No 346
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.79 E-value=7.8e-05 Score=48.63 Aligned_cols=53 Identities=25% Similarity=0.238 Sum_probs=34.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKY 88 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~ 88 (121)
=.+++.||+|+|||+|++.++. --+||.| .+.++|..+.- .+.+.|+......
T Consensus 30 e~iaitGPSG~GKStllk~va~-----------Lisp~~G----~l~f~Ge~vs~---~~pea~Rq~VsY~ 82 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVAS-----------LISPTSG----TLLFEGEDVST---LKPEAYRQQVSYC 82 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHh-----------ccCCCCc----eEEEcCccccc---cChHHHHHHHHHH
Confidence 3579999999999999999987 3345555 44555543332 3345555444333
No 347
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.77 E-value=6.1e-05 Score=51.07 Aligned_cols=22 Identities=41% Similarity=0.492 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=-++++|++|||||||++.+.+
T Consensus 32 e~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 32 EFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3478999999999999999876
No 348
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.76 E-value=0.00071 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
...+.|.+.|++|+|||||+..+..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999998755
No 349
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.75 E-value=0.00039 Score=46.28 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-++++|++|+||||.+-++..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHH
Confidence 3589999999999999988865
No 350
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.73 E-value=0.00044 Score=48.06 Aligned_cols=89 Identities=13% Similarity=0.062 Sum_probs=49.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcchHHHHHHHhhccCEE
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAHAV 95 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~~~~~~~i 95 (121)
.=-+++.|++|+||||+++.+....... ....-+++- ..++.+.+ .++.+ +......+.......++.---+
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~-----~~~iitiEd-p~E~~~~~~~q~~v-~~~~~~~~~~~l~~~lR~~PD~ 152 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTP-----EKNIITVED-PVEYQIPGINQVQV-NEKAGLTFARGLRAILRQDPDI 152 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCC-----CCeEEEECC-CceecCCCceEEEe-CCcCCcCHHHHHHHHhccCCCE
Confidence 3358999999999999999987622110 011111110 01122233 22332 2222335667777777765666
Q ss_pred EEEEeCCCcccHHHHHH
Q 033349 96 VFVIDAACPSRFEDSKT 112 (121)
Q Consensus 96 i~v~d~~~~~s~~~~~~ 112 (121)
+++-.+.+++++..+.+
T Consensus 153 i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 153 IMVGEIRDAETAEIAVQ 169 (264)
T ss_pred EEeccCCCHHHHHHHHH
Confidence 77777888877665543
No 351
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.73 E-value=0.00043 Score=43.67 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G 48 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAG 48 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 34578999999999999999987
No 352
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.71 E-value=0.00021 Score=46.04 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G 48 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSG 48 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34678999999999999999987
No 353
>PRK06217 hypothetical protein; Validated
Probab=97.70 E-value=4.1e-05 Score=50.17 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+|+|+|.+||||||+.+++..
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 354
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.70 E-value=6e-05 Score=52.02 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=++++|++||||||+++.+.+
T Consensus 29 f~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 29 FLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 368999999999999998876
No 355
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00018 Score=56.04 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=57.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhh-ccCCCCCCCCcccCCCceEEE------------------EEEECCeEEEEEECCCCcc
Q 033349 20 VLILGIDKAGKTTLLEKLKSV-YSNVEGLPPDRIVPTVGLNIG------------------RIEVSNSKLVFWDLGGQPG 80 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~-~~~~~~~~~~~~~~t~~~~~~------------------~~~~~~~~~~i~d~~g~~~ 80 (121)
|||+|.-.+|||-|+-.+... ..+ +.... ....+|.++- .+.+ --+.++||||++.
T Consensus 478 cCilGHVDTGKTKlld~ir~tNVqe--geagg-itqqIgAt~fp~~ni~e~tk~~~~~~K~~~kv--Pg~lvIdtpghEs 552 (1064)
T KOG1144|consen 478 CCILGHVDTGKTKLLDKIRGTNVQE--GEAGG-ITQQIGATYFPAENIREKTKELKKDAKKRLKV--PGLLVIDTPGHES 552 (1064)
T ss_pred EEEeecccccchHHHHHhhcccccc--ccccc-eeeeccccccchHHHHHHHHHHHhhhhhhcCC--CeeEEecCCCchh
Confidence 899999999999999998761 111 10000 0011111110 0111 1378999999999
Q ss_pred hHHHHHHHhhccCEEEEEEeCC---CcccHHHHH
Q 033349 81 LRSIWEKYYEEAHAVVFVIDAA---CPSRFEDSK 111 (121)
Q Consensus 81 ~~~~~~~~~~~~~~ii~v~d~~---~~~s~~~~~ 111 (121)
|..+.......||.+|+|+|+- +|.+++.+.
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi~ 586 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN 586 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHHH
Confidence 9998888888999999999984 466666553
No 356
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.69 E-value=0.0002 Score=49.65 Aligned_cols=49 Identities=24% Similarity=0.577 Sum_probs=39.4
Q ss_pred CCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCC
Q 033349 55 TVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAAC 103 (121)
Q Consensus 55 t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~ 103 (121)
|.|.....+.++-++++.+|++||..-+..|-..+....+++||...+.
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSs 237 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSS 237 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccc
Confidence 3444445566666789999999999889999999999999999997653
No 357
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.69 E-value=6.5e-05 Score=53.76 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
++++||+|+|||||++.+.+
T Consensus 32 ~vllGPSGcGKSTlLr~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999999987
No 358
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=97.69 E-value=8.6e-05 Score=55.40 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=59.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcc--h--HHHHH----H
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPG--L--RSIWE----K 87 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~--~--~~~~~----~ 87 (121)
..-.++++|.+++|||||++.++..-.+.. .....|.+.-..++.++-..+++.||||-.. . +..+. .
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradvevq----pYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADDEVQ----PYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CcCeEEEecCCCCCcHhhcccccccccccC----CcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 456799999999999999999877332221 1222344444455555557799999999221 1 11111 1
Q ss_pred Hh-hccCEEEEEEeCCC--cccHHHHHHHHHhh
Q 033349 88 YY-EEAHAVVFVIDAAC--PSRFEDSKTALGKK 117 (121)
Q Consensus 88 ~~-~~~~~ii~v~d~~~--~~s~~~~~~~l~~i 117 (121)
.+ +--.+|+++-|++. ..|+++--+++..|
T Consensus 243 ALAHLraaVLYfmDLSe~CGySva~QvkLfhsI 275 (620)
T KOG1490|consen 243 ALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSI 275 (620)
T ss_pred HHHHhhhhheeeeechhhhCCCHHHHHHHHHHh
Confidence 12 22346777889876 36666665555544
No 359
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.68 E-value=0.00081 Score=39.77 Aligned_cols=81 Identities=17% Similarity=0.230 Sum_probs=50.9
Q ss_pred EEEEc-CCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECC-eEEEEEECCCCcchHHHHHHHhhccCEEEE
Q 033349 20 VLILG-IDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSN-SKLVFWDLGGQPGLRSIWEKYYEEAHAVVF 97 (121)
Q Consensus 20 i~vvG-~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~ 97 (121)
+++.| ..|+||||+...+....... +.....+..+. ..+.++|+|+.... .....+..+|.+++
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~------------~~~vl~~d~d~~~d~viiD~p~~~~~--~~~~~l~~ad~viv 67 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR------------GKRVLLIDLDPQYDYIIIDTPPSLGL--LTRNALAAADLVLI 67 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC------------CCcEEEEeCCCCCCEEEEeCcCCCCH--HHHHHHHHCCEEEE
Confidence 45665 56999999998887633221 11111111111 56899999986532 23367788999999
Q ss_pred EEeCCCcccHHHHHHHHH
Q 033349 98 VIDAACPSRFEDSKTALG 115 (121)
Q Consensus 98 v~d~~~~~s~~~~~~~l~ 115 (121)
+.+. +..+++.+..++.
T Consensus 68 ~~~~-~~~s~~~~~~~~~ 84 (104)
T cd02042 68 PVQP-SPLDLDGLEKLLE 84 (104)
T ss_pred eccC-CHHHHHHHHHHHH
Confidence 8875 4556777766654
No 360
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.67 E-value=0.0011 Score=49.04 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-|+++|++|+||||++..+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46789999999999999998864
No 361
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.67 E-value=4.3e-05 Score=47.66 Aligned_cols=20 Identities=30% Similarity=0.579 Sum_probs=18.4
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
|+++|++||||||+++.+..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999975
No 362
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.67 E-value=8.8e-05 Score=55.97 Aligned_cols=24 Identities=42% Similarity=0.458 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-+++++|++|+|||||++.+.+
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999987
No 363
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.65 E-value=9.5e-05 Score=53.22 Aligned_cols=20 Identities=45% Similarity=0.624 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
++++||+||||||+++.+.+
T Consensus 34 ~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 67999999999999999987
No 364
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.64 E-value=0.00012 Score=52.58 Aligned_cols=89 Identities=17% Similarity=0.163 Sum_probs=57.7
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhhc-----------cCCC------CCCC------------CcccCCCceEEEEEE
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSVY-----------SNVE------GLPP------------DRIVPTVGLNIGRIE 64 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~~-----------~~~~------~~~~------------~~~~~t~~~~~~~~~ 64 (121)
+++.++++-.|.-.-|||||+-+++.-. ...+ +... .+..-|+.+.+..+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 4678999999999999999999986510 0000 0000 122223333344443
Q ss_pred ECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCC
Q 033349 65 VSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAA 102 (121)
Q Consensus 65 ~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~ 102 (121)
-+..++.+.|||||+.|..--..--..||++|+++|..
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR 120 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDAR 120 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecc
Confidence 34478999999999988654333446799999999964
No 365
>PRK06547 hypothetical protein; Provisional
Probab=97.63 E-value=0.00012 Score=47.64 Aligned_cols=35 Identities=29% Similarity=0.183 Sum_probs=28.6
Q ss_pred HHHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 6 YGLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 6 ~~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+.+...+.......|+|.|++||||||+.+.+...
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555666778888999999999999999999763
No 366
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.63 E-value=3.8e-05 Score=49.27 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=17.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
||+|.|.+++|||||++.+...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999763
No 367
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.63 E-value=0.00013 Score=48.93 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~G 52 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGG 52 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 368
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.62 E-value=0.00013 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILG 51 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 369
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.61 E-value=7e-05 Score=58.44 Aligned_cols=31 Identities=35% Similarity=0.431 Sum_probs=26.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG 57 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~ 57 (121)
..=+++++|.+|||||||++.+.+ -+.|+.|
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~g-----------ly~p~~G 528 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLG-----------LYKPQQG 528 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc-----------CCCCCCc
Confidence 445799999999999999999998 5666666
No 370
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.60 E-value=8.1e-05 Score=50.69 Aligned_cols=22 Identities=45% Similarity=0.563 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 31 E~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 31 EMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred cEEEEECCCCCcHHHHHHHHhc
Confidence 4589999999999999999976
No 371
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.59 E-value=0.0001 Score=57.29 Aligned_cols=24 Identities=38% Similarity=0.421 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456789999999999999999998
No 372
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.58 E-value=8.9e-05 Score=41.02 Aligned_cols=20 Identities=35% Similarity=0.498 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
|++.|++|+||||+.+.+..
T Consensus 2 i~i~G~~gsGKst~~~~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68899999999999999987
No 373
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.58 E-value=0.00022 Score=50.32 Aligned_cols=61 Identities=25% Similarity=0.506 Sum_probs=40.1
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEE---EEEEECC-eEEEEEECCC
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNI---GRIEVSN-SKLVFWDLGG 77 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~---~~~~~~~-~~~~i~d~~g 77 (121)
+.++.+.|+|-||+|||||++.+.+.+-.+. ....+.+..|+.. ..+.+.. -.+.+.||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~--k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKK--KAARVGAEPGVTRRVSERIRISHRPPVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhc--cceeccCCCCceeeehhheEeccCCceEEecCCC
Confidence 4689999999999999999999877544332 2222333333322 2233433 4589999999
No 374
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.58 E-value=0.00018 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G 49 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYK 49 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999987
No 375
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.58 E-value=0.00019 Score=47.80 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G 49 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNG 49 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999987
No 376
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.58 E-value=0.0001 Score=49.26 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=23.1
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+++..-|+++|++|+|||||++.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 345677999999999999999999763
No 377
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.58 E-value=0.00017 Score=47.42 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G 40 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNG 40 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999987
No 378
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=0.00018 Score=48.78 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVG 48 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999987
No 379
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.57 E-value=0.00019 Score=47.76 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAG 48 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 44689999999999999999987
No 380
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.56 E-value=0.00012 Score=55.86 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~g 391 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTR 391 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345789999999999999999998
No 381
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.56 E-value=0.0002 Score=48.45 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=.++++|++|+|||||++.+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G 53 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCING 53 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999987
No 382
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=0.00019 Score=48.64 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~G 57 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGG 57 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999987
No 383
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.56 E-value=0.0002 Score=48.12 Aligned_cols=24 Identities=42% Similarity=0.495 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=.++++|++|+|||||++.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMG 48 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999987
No 384
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.55 E-value=0.00018 Score=48.22 Aligned_cols=23 Identities=39% Similarity=0.368 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999987
No 385
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.55 E-value=8.8e-05 Score=45.38 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
|++.|++|+|||++++.+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHh
Confidence 68999999999999999988
No 386
>PRK03839 putative kinase; Provisional
Probab=97.55 E-value=8.6e-05 Score=48.39 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+|+++|.+|+||||+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999763
No 387
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.55 E-value=0.0018 Score=45.24 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...-++++|++|+||||.+..+...
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK 95 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3466888899999999998888653
No 388
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=0.00021 Score=47.76 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G 48 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999987
No 389
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.55 E-value=6.7e-05 Score=52.93 Aligned_cols=38 Identities=34% Similarity=0.408 Sum_probs=27.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEE
Q 033349 19 HVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLV 71 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 71 (121)
-+.++|.+|+|||||++.+.. -..||.| .+.++|..+.
T Consensus 34 I~GIIG~SGAGKSTLiR~iN~-----------Le~PtsG----~v~v~G~di~ 71 (339)
T COG1135 34 IFGIIGYSGAGKSTLLRLINL-----------LERPTSG----SVFVDGQDLT 71 (339)
T ss_pred EEEEEcCCCCcHHHHHHHHhc-----------cCCCCCc----eEEEcCEecc
Confidence 478999999999999999876 3346655 4556664443
No 390
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.54 E-value=0.00023 Score=47.83 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G 53 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGG 53 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34688999999999999999987
No 391
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.54 E-value=0.00016 Score=49.98 Aligned_cols=23 Identities=39% Similarity=0.432 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-=++++||.|+|||||++.+.+.
T Consensus 29 ~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 29 EITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 34689999999999999999873
No 392
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=0.00015 Score=51.51 Aligned_cols=34 Identities=38% Similarity=0.605 Sum_probs=26.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCe
Q 033349 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS 68 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 68 (121)
++++|.+|||||||++.+.+ -.+||-| .+.+++.
T Consensus 57 fViMGLSGSGKSTLvR~~Nr-----------Liept~G----~ilv~g~ 90 (386)
T COG4175 57 FVIMGLSGSGKSTLVRLLNR-----------LIEPTRG----EILVDGK 90 (386)
T ss_pred EEEEecCCCCHHHHHHHHhc-----------cCCCCCc----eEEECCc
Confidence 68899999999999999876 5567766 4455554
No 393
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.53 E-value=0.00023 Score=47.66 Aligned_cols=23 Identities=39% Similarity=0.345 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAG 53 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999987
No 394
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.53 E-value=0.0003 Score=51.36 Aligned_cols=69 Identities=25% Similarity=0.398 Sum_probs=54.8
Q ss_pred ccCCCceEEEEEEE-CCeEEEEEECCCCcchHHHHHHHhhccCEEEEEEeCCCc----------ccHHHHHHHHHhhccC
Q 033349 52 IVPTVGLNIGRIEV-SNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVIDAACP----------SRFEDSKTALGKKGSS 120 (121)
Q Consensus 52 ~~~t~~~~~~~~~~-~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~~~----------~s~~~~~~~l~~i~~~ 120 (121)
..+|.|+....+.+ .+..+.++|++|+..-+..|..++.++++++||+++++- ..+.+....+..++++
T Consensus 219 r~~T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~ 298 (389)
T PF00503_consen 219 RVKTTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNN 298 (389)
T ss_dssp ----SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTS
T ss_pred cCCCCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhC
Confidence 34678888888888 889999999999998899999999999999999997632 3477777777777665
No 395
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.53 E-value=0.00023 Score=48.09 Aligned_cols=23 Identities=35% Similarity=0.281 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVG 48 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 396
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.53 E-value=0.00021 Score=48.61 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G 50 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINR 50 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 397
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.53 E-value=0.00024 Score=47.49 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~G 50 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYG 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999999987
No 398
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.53 E-value=8.3e-05 Score=48.83 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.++++|++|+|||||++.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
No 399
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.53 E-value=0.00023 Score=47.50 Aligned_cols=23 Identities=35% Similarity=0.446 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34679999999999999999987
No 400
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.53 E-value=0.00023 Score=47.93 Aligned_cols=23 Identities=22% Similarity=0.278 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILG 53 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999999987
No 401
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.52 E-value=9.6e-05 Score=46.36 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q 033349 20 VLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~ 40 (121)
++++|++|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999873
No 402
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.52 E-value=0.00027 Score=46.07 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|+.|+|||||++.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 44678999999999999999987
No 403
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.52 E-value=0.00024 Score=46.43 Aligned_cols=23 Identities=35% Similarity=0.257 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFG 48 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999999987
No 404
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=0.00011 Score=44.73 Aligned_cols=22 Identities=41% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++++|++|+|||++++.+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~ 24 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAR 24 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999987
No 405
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.52 E-value=0.00063 Score=42.57 Aligned_cols=24 Identities=42% Similarity=0.324 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.--+++.|+.|+|||||++.+...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345889999999999999999884
No 406
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.00018 Score=49.12 Aligned_cols=31 Identities=39% Similarity=0.454 Sum_probs=26.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCce
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGL 58 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~ 58 (121)
.=++.++|..|+|||||++.+.+ .+.||.|.
T Consensus 53 Ge~vGiiG~NGaGKSTLlkliaG-----------i~~Pt~G~ 83 (249)
T COG1134 53 GERVGIIGHNGAGKSTLLKLIAG-----------IYKPTSGK 83 (249)
T ss_pred CCEEEEECCCCCcHHHHHHHHhC-----------ccCCCCce
Confidence 45789999999999999999998 66777773
No 407
>PRK10908 cell division protein FtsE; Provisional
Probab=97.51 E-value=0.00026 Score=47.59 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=.++++|++|+|||||++.+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICG 50 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999987
No 408
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.51 E-value=9.8e-05 Score=48.01 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.++|+|++||||||+++.+...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998763
No 409
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00077 Score=46.11 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.+.++|++|+|||||.+.+.+
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 34579999999999999999987
No 410
>PRK14530 adenylate kinase; Provisional
Probab=97.51 E-value=0.0001 Score=49.43 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+|+|+|++||||||+.+.+...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 411
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.51 E-value=9.1e-05 Score=45.94 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++|+|+.|+|||||++.+.+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g 33 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAG 33 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEEccCCCccccceeeecc
Confidence 34689999999999999999987
No 412
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00013 Score=49.16 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=-.+|+|+.|+|||||++.+++
T Consensus 28 ev~ailGPNGAGKSTlLk~LsG 49 (259)
T COG4559 28 EVLAILGPNGAGKSTLLKALSG 49 (259)
T ss_pred cEEEEECCCCccHHHHHHHhhC
Confidence 3568999999999999999998
No 413
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.50 E-value=0.00011 Score=57.43 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~g 527 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAG 527 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456889999999999999999987
No 414
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.50 E-value=0.001 Score=47.96 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
....|+|.|+.|+|||||++.++..
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~ 185 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISA 185 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcc
Confidence 5678999999999999999999873
No 415
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.50 E-value=0.00024 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAG 48 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999988
No 416
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.50 E-value=0.00027 Score=48.00 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTR 49 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34678999999999999999987
No 417
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.50 E-value=0.00024 Score=47.13 Aligned_cols=24 Identities=33% Similarity=0.367 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=.++++|++|+|||||++.+.+
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G 49 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAG 49 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999987
No 418
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.50 E-value=0.00015 Score=55.47 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~g 389 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMG 389 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999987
No 419
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.50 E-value=0.00017 Score=55.08 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-+++++|++|+|||||++.+.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g 398 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLG 398 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456789999999999999999987
No 420
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.49 E-value=0.0003 Score=46.51 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=.++++|+.|+|||||++.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G 48 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAG 48 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999987
No 421
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.49 E-value=0.00014 Score=48.49 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 15 KTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 15 ~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+...|+|.|++|||||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999774
No 422
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.49 E-value=0.00011 Score=57.27 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~g 522 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVG 522 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999987
No 423
>PRK02496 adk adenylate kinase; Provisional
Probab=97.49 E-value=0.00012 Score=47.81 Aligned_cols=22 Identities=32% Similarity=0.323 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.+++++|++|+||||+++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~ 23 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAE 23 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999876
No 424
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.49 E-value=0.0003 Score=45.88 Aligned_cols=24 Identities=46% Similarity=0.491 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-.++++|++|+|||||++.+.+
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G 47 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAG 47 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345688999999999999999987
No 425
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.49 E-value=0.00027 Score=47.44 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~G 52 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAG 52 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999987
No 426
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.49 E-value=0.00037 Score=48.16 Aligned_cols=91 Identities=18% Similarity=0.072 Sum_probs=62.0
Q ss_pred EEEEcCCCC--CHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCe----EEEEEECCCCcchHHHHHHHhhccC
Q 033349 20 VLILGIDKA--GKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNS----KLVFWDLGGQPGLRSIWEKYYEEAH 93 (121)
Q Consensus 20 i~vvG~~~~--GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~i~d~~g~~~~~~~~~~~~~~~~ 93 (121)
.+|+|-+|+ ||-++++++.. ..+.++..+.-....+.+++++. .+.+.-.+-.+++.-..........
T Consensus 7 ~lv~g~sgvfsg~~~ll~rl~s------~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~pl~ 80 (418)
T KOG4273|consen 7 ALVTGCSGVFSGDQLLLHRLGS------EDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAEPLQ 80 (418)
T ss_pred EEEecccccccchHHHHHHhcc------hhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCccccccee
Confidence 578899999 99999999987 67777776666666677777651 1222222222222111122224567
Q ss_pred EEEEEEeCCCcccHHHHHHHHHh
Q 033349 94 AVVFVIDAACPSRFEDSKTALGK 116 (121)
Q Consensus 94 ~ii~v~d~~~~~s~~~~~~~l~~ 116 (121)
++++|||.+....+..+..|+..
T Consensus 81 a~vmvfdlse~s~l~alqdwl~h 103 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQDWLPH 103 (418)
T ss_pred eEEEEEeccchhhhHHHHhhccc
Confidence 88999999999999999999873
No 427
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.49 E-value=0.00027 Score=48.69 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++|+|++|+|||||++.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAG 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45689999999999999999987
No 428
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.49 E-value=0.00026 Score=43.42 Aligned_cols=34 Identities=24% Similarity=0.264 Sum_probs=25.9
Q ss_pred HHHhhhccCceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 7 GLWKYIFTKTEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 7 ~~~~~~~~~~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+...+.....-.+++.|++|+|||++++.+...
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3344444445567999999999999999999873
No 429
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.49 E-value=0.00027 Score=47.35 Aligned_cols=23 Identities=43% Similarity=0.488 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G 59 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAG 59 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 34688999999999999999987
No 430
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.00024 Score=47.50 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=-++++|++|+|||||++.+.+
T Consensus 32 e~vv~lGpSGcGKTTLLnl~AG 53 (259)
T COG4525 32 ELVVVLGPSGCGKTTLLNLIAG 53 (259)
T ss_pred CEEEEEcCCCccHHHHHHHHhc
Confidence 3478999999999999999987
No 431
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.48 E-value=0.00011 Score=44.69 Aligned_cols=21 Identities=38% Similarity=0.495 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q 033349 20 VLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~ 40 (121)
|+|.|.+||||||+++.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999774
No 432
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00025 Score=48.18 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNG 49 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 433
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.48 E-value=0.00025 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISG 48 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcC
Confidence 34589999999999999999987
No 434
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.48 E-value=0.0029 Score=40.85 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q 033349 20 VLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+++.|++|+||||++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999998887653
No 435
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.48 E-value=8e-05 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=22.2
Q ss_pred cCceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 14 TKTEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 14 ~~~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+....-|+|+|++|+|||||++.+..
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 34567789999999999999999975
No 436
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.48 E-value=0.00074 Score=48.27 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
...|++.|++|+||||+++.++..
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~ 167 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAE 167 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999873
No 437
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00026 Score=47.16 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILG 48 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34578999999999999999987
No 438
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.48 E-value=0.00013 Score=50.01 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..++++|+|++|||||+|+..++.
T Consensus 12 ~~fr~viIG~sGSGKT~li~~lL~ 35 (241)
T PF04665_consen 12 DPFRMVIIGKSGSGKTTLIKSLLY 35 (241)
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999988876
No 439
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.47 E-value=0.00093 Score=42.54 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|+.|+|||||++.+.+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g 47 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAG 47 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35678999999999999999987
No 440
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.47 E-value=0.00031 Score=46.89 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G 48 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAG 48 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999987
No 441
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.47 E-value=0.0011 Score=48.33 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.--++++|++|+||||++..+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999999875
No 442
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00032 Score=47.33 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.2
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 033349 20 VLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~ 39 (121)
-+++||+|+|||||++.+.+
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 48999999999999999875
No 443
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00027 Score=48.12 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (239)
T cd03296 29 ELVALLGPSGSGKTTLLRLIAG 50 (239)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999987
No 444
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.46 E-value=0.00031 Score=47.19 Aligned_cols=23 Identities=35% Similarity=0.361 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTT 48 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34579999999999999999987
No 445
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.46 E-value=0.00035 Score=46.44 Aligned_cols=23 Identities=43% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G 49 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAG 49 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34679999999999999999987
No 446
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.46 E-value=0.00014 Score=49.49 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..++|+|+|++||||||+.+.+...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999773
No 447
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.46 E-value=0.00016 Score=39.21 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=18.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++.|+.|+||||++.++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999998865
No 448
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.46 E-value=0.00015 Score=48.37 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+++++++|+.|+|||||++++.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999998774
No 449
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.00016 Score=54.35 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=22.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=|++++|.+|+||||+++.+.+
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~ 386 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAG 386 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999997
No 450
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.45 E-value=0.00012 Score=47.56 Aligned_cols=21 Identities=33% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++|+|||||++.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999999987
No 451
>PRK14532 adenylate kinase; Provisional
Probab=97.45 E-value=0.00014 Score=47.72 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+|+++|++||||||+.+++...
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~ 23 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEE 23 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999763
No 452
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.45 E-value=0.00041 Score=44.98 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4579999999999999999987
No 453
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00032 Score=47.74 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=.++++|++|+|||||++.+.+
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G 51 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVG 51 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999987
No 454
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.45 E-value=0.00013 Score=43.99 Aligned_cols=21 Identities=43% Similarity=0.406 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLK 38 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~ 38 (121)
--++++|++|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 457999999999999999975
No 455
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.45 E-value=0.0003 Score=47.51 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=.++++|++|+|||||++.+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G 48 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMG 48 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 445789999999999999999987
No 456
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00035 Score=46.61 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-.++++|+.|+|||||++.+.+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~l~g 46 (211)
T cd03298 23 QGEITAIVGPSGSGKSTLLNLIAG 46 (211)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345689999999999999999987
No 457
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.45 E-value=0.00034 Score=47.73 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~G 51 (241)
T PRK14250 30 AIYTIVGPSGAGKSTLIKLINR 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3589999999999999999987
No 458
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.44 E-value=0.00032 Score=46.54 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=18.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-+.++|++|+|||||++.+..
T Consensus 30 f~fl~GpSGAGKSTllkLi~~ 50 (223)
T COG2884 30 FVFLTGPSGAGKSTLLKLIYG 50 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 357889999999999999987
No 459
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.44 E-value=0.00019 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G 46 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGL 46 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999987
No 460
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.44 E-value=0.00041 Score=45.01 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G 48 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILG 48 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999999987
No 461
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.44 E-value=0.0002 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-+++++|++|+|||||++.+.+
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~g 383 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQR 383 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446789999999999999999987
No 462
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00032 Score=48.71 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSG 49 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcC
Confidence 34689999999999999999987
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.43 E-value=0.00014 Score=45.85 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.|+|+|++++|||||++.+++.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999773
No 464
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.43 E-value=0.00022 Score=54.46 Aligned_cols=24 Identities=38% Similarity=0.479 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-+++++|++|+|||||++.+.+
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445889999999999999999987
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.43 E-value=0.00014 Score=47.41 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 033349 19 HVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-++++|++||||||+++.+..
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999874
No 466
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.43 E-value=0.00027 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=-++++|++|+|||||++.+.+
T Consensus 19 Gei~~l~G~sGsGKSTLLr~L~G 41 (363)
T TIGR01186 19 GEIFVIMGLSGSGKSTTVRMLNR 41 (363)
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 34579999999999999999987
No 467
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00018 Score=47.98 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+. .++++|++|+|||||++.+.+
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~G 47 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILAT 47 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhC
Confidence 35 789999999999999999987
No 468
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00034 Score=49.01 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=.++++|++|+|||||++.+++
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~L~G 55 (286)
T PRK13646 32 QGKYYAIVGQTGSGKSTLIQNINA 55 (286)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345689999999999999999987
No 469
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.43 E-value=0.00034 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~G 58 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAG 58 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999999987
No 470
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.43 E-value=0.00014 Score=48.03 Aligned_cols=21 Identities=33% Similarity=0.377 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhh
Q 033349 20 VLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~ 40 (121)
|+|.|++|||||||++.+...
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999774
No 471
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00036 Score=46.68 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++|+|++|+|||||++.+.+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G 45 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAG 45 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhC
Confidence 4679999999999999999987
No 472
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.42 E-value=0.00021 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+++
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~g 388 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLR 388 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 445789999999999999999998
No 473
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.42 E-value=0.00038 Score=48.20 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~G 59 (265)
T TIGR02769 37 GETVGLLGRSGCGKSTLARLLLG 59 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34688999999999999999987
No 474
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.41 E-value=0.00019 Score=56.15 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~g 529 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQN 529 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456789999999999999999988
No 475
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.41 E-value=0.0004 Score=47.34 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999987
No 476
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.41 E-value=0.00036 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G 48 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNR 48 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999987
No 477
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=9.1e-05 Score=54.40 Aligned_cols=87 Identities=21% Similarity=0.176 Sum_probs=61.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhhccCCC--CCCCC------------cccCCCceEEEEEEECCeEEEEEECCCCcchHH
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSVYSNVE--GLPPD------------RIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRS 83 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~~~~~~--~~~~~------------~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~ 83 (121)
-+|.++..-.+||||...+++...+-.. +...+ +..-|+-.....+.+++..+.++||||+..++-
T Consensus 38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l 117 (753)
T KOG0464|consen 38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL 117 (753)
T ss_pred hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence 4589999999999999999865321110 11111 111122222235667789999999999999988
Q ss_pred HHHHHhhccCEEEEEEeCCCc
Q 033349 84 IWEKYYEEAHAVVFVIDAACP 104 (121)
Q Consensus 84 ~~~~~~~~~~~ii~v~d~~~~ 104 (121)
.....++-.||++.|+|.+-.
T Consensus 118 everclrvldgavav~dasag 138 (753)
T KOG0464|consen 118 EVERCLRVLDGAVAVFDASAG 138 (753)
T ss_pred EHHHHHHHhcCeEEEEeccCC
Confidence 888888999999999997653
No 478
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.41 E-value=0.0004 Score=50.87 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=51.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCceEEEEEEECCeEEEEEECCCCcchHHHHHHHhhccCEEEEEE
Q 033349 20 VLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVGLNIGRIEVSNSKLVFWDLGGQPGLRSIWEKYYEEAHAVVFVI 99 (121)
Q Consensus 20 i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 99 (121)
+.++|..|||||||+..+++ -+.|..| .+.++|. .+|-..-++|++.+...+.+.+.+==.+
T Consensus 352 vFliG~NGsGKST~~~LLtG-----------L~~PqsG----~I~ldg~---pV~~e~ledYR~LfSavFsDyhLF~~ll 413 (546)
T COG4615 352 VFLIGGNGSGKSTLAMLLTG-----------LYQPQSG----EILLDGK---PVSAEQLEDYRKLFSAVFSDYHLFDQLL 413 (546)
T ss_pred EEEECCCCCcHHHHHHHHhc-----------ccCCCCC----ceeECCc---cCCCCCHHHHHHHHHHHhhhHhhhHhhh
Confidence 57889999999999999998 4445444 4455553 2233344677777766655543332233
Q ss_pred eCCCcccHHHHHHHHHhh
Q 033349 100 DAACPSRFEDSKTALGKK 117 (121)
Q Consensus 100 d~~~~~s~~~~~~~l~~i 117 (121)
...+..+.+.+..|++++
T Consensus 414 ~~e~~as~q~i~~~LqrL 431 (546)
T COG4615 414 GPEGKASPQLIEKWLQRL 431 (546)
T ss_pred CCccCCChHHHHHHHHHH
Confidence 344446778888888764
No 479
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.41 E-value=0.00041 Score=47.45 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G 51 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINL 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999987
No 480
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.00038 Score=47.11 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPR 50 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 34589999999999999999987
No 481
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.41 E-value=0.00015 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..--|+++|++|+|||||++.+...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456899999999999999999874
No 482
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.41 E-value=0.0004 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
-.++++|++|+|||||++.+.+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G 49 (242)
T cd03295 28 EFLVLIGPSGSGKTTTMKMINR 49 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 3578999999999999999987
No 483
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00036 Score=48.51 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMG 55 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34679999999999999999987
No 484
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00029 Score=53.24 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
..-+++++|++|+|||||++.+.+
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G 369 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLG 369 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999987
No 485
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.40 E-value=0.00037 Score=47.84 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTG 53 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 44689999999999999999987
No 486
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.40 E-value=0.0011 Score=47.24 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
....+++.|++|+|||||++.++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~ 170 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIIN 170 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999987
No 487
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.40 E-value=0.00034 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.-.++++|++|+|||||++.+.+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G 48 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILG 48 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 44679999999999999999987
No 488
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.40 E-value=0.00035 Score=49.28 Aligned_cols=23 Identities=35% Similarity=0.326 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|+.|+|||||++.+.+
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~G 41 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTT 41 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 34578999999999999999987
No 489
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.39 E-value=0.00024 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.398 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.=+++++|++|+|||||++.+.+
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~g 513 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLG 513 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999987
No 490
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.39 E-value=0.00019 Score=46.64 Aligned_cols=22 Identities=45% Similarity=0.626 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhh
Q 033349 19 HVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 19 ~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
+|.+.|++|+||||++++++..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 491
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.0019 Score=48.17 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.-+|+||||.|+|||||+..+++.
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcC
Confidence 368999999999999999999873
No 492
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=97.39 E-value=0.00041 Score=47.02 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~G 33 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISG 33 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34689999999999999999987
No 493
>PRK13949 shikimate kinase; Provisional
Probab=97.39 E-value=0.00019 Score=46.58 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
-+|+|+|++|+||||+.+.+...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998763
No 494
>PRK08233 hypothetical protein; Provisional
Probab=97.39 E-value=0.00022 Score=46.21 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
..-|++.|.+|||||||+.++...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 355788899999999999999863
No 495
>PRK14531 adenylate kinase; Provisional
Probab=97.39 E-value=0.00019 Score=47.00 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKSV 40 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~~ 40 (121)
.+|+++|+|||||||+.+.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999763
No 496
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.38 E-value=0.00043 Score=48.00 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
.=.++++|++|+|||||++.+.+
T Consensus 39 Ge~~~i~G~NGsGKSTLl~~l~G 61 (267)
T PRK15112 39 GQTLAIIGENGSGKSTLAKMLAG 61 (267)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 34688999999999999999987
No 497
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.38 E-value=0.00026 Score=53.45 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 033349 16 TEFHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 16 ~~~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
+.-+++++|++|+|||||++.+.+
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g 370 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLG 370 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999987
No 498
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.38 E-value=0.00023 Score=55.04 Aligned_cols=30 Identities=30% Similarity=0.320 Sum_probs=25.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhhccCCCCCCCCcccCCCc
Q 033349 17 EFHVLILGIDKAGKTTLLEKLKSVYSNVEGLPPDRIVPTVG 57 (121)
Q Consensus 17 ~~~i~vvG~~~~GKTsl~~~~~~~~~~~~~~~~~~~~~t~~ 57 (121)
.-.+++|||+|+||||+++.+.+ -|.|+-|
T Consensus 494 Ge~vALVGPSGsGKSTiasLL~r-----------fY~PtsG 523 (716)
T KOG0058|consen 494 GEVVALVGPSGSGKSTIASLLLR-----------FYDPTSG 523 (716)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH-----------hcCCCCC
Confidence 34689999999999999999988 6677777
No 499
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.38 E-value=0.00044 Score=48.00 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++|+|++|+|||||++.+.+
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G 55 (269)
T PRK11831 34 KITAIMGPSGIGKTTLLRLIGG 55 (269)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999987
No 500
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.38 E-value=0.00042 Score=48.28 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 033349 18 FHVLILGIDKAGKTTLLEKLKS 39 (121)
Q Consensus 18 ~~i~vvG~~~~GKTsl~~~~~~ 39 (121)
=.++++|++|+|||||++.+.+
T Consensus 34 e~~~l~G~nGsGKSTLl~~i~G 55 (280)
T PRK13649 34 SYTAFIGHTGSGKSTIMQLLNG 55 (280)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4579999999999999999987
Done!